Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 247 of 433
Found at i:76987684 original size:20 final size:20
Alignment explanation
Indices: 76987656--76987776 Score: 63
Period size: 20 Copynumber: 6.0 Consensus size: 20
76987646 TTGTACGGGA
* *
76987656 TTTGCACTTGGGTGCCTCTG
1 TTTGCACTTCGATGCCTCTG
*
76987676 TTTGTACTTCGATGCCTCTG
1 TTTGCACTTCGATGCCTCTG
* * * *
76987696 TATACACTTCGGTG-CTCCTA
1 TTTGCACTTCGATGCCT-CTG
* * *
76987716 TTTGTACATTTG-TGCCCCTG
1 TTTGCAC-TTCGATGCCTCTG
76987736 TTTGCACTTC-ATG-CTCTTG
1 TTTGCACTTCGATGCCTC-TG
76987755 TTATGCATCTAT-GATGCCTCTG
1 TT-TGCA-CT-TCGATGCCTCTG
76987777 GTGTGGTGTA
Statistics
Matches: 74, Mismatches: 17, Indels: 18
0.68 0.16 0.17
Matches are distributed among these distances:
18 2 0.03
19 10 0.14
20 47 0.64
21 6 0.08
22 6 0.08
23 3 0.04
ACGTcount: A:0.12, C:0.26, G:0.20, T:0.42
Consensus pattern (20 bp):
TTTGCACTTCGATGCCTCTG
Found at i:76987744 original size:40 final size:40
Alignment explanation
Indices: 76987656--76987745 Score: 94
Period size: 40 Copynumber: 2.2 Consensus size: 40
76987646 TTGTACGGGA
* * *
76987656 TTTGCACTTGGGTGCCTCTGTTTGTACTTCGATGCCTCTG
1 TTTGCACTTCGGTGCCTCTATTTGTACTTCGATGCCCCTG
* * *
76987696 TATACACTTCGGTG-CTCCTATTTGTACATTTG-TGCCCCTG
1 TTTGCACTTCGGTGCCT-CTATTTGTAC-TTCGATGCCCCTG
76987736 TTTGCACTTC
1 TTTGCACTTC
76987746 ATGCTCTTGT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
39 2 0.05
40 35 0.88
41 3 0.08
ACGTcount: A:0.11, C:0.27, G:0.20, T:0.42
Consensus pattern (40 bp):
TTTGCACTTCGGTGCCTCTATTTGTACTTCGATGCCCCTG
Found at i:76988728 original size:24 final size:24
Alignment explanation
Indices: 76988701--76988754 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
76988691 TAAAACAAAC
*
76988701 CATTACTAGCCATTCTAATGGCTA
1 CATTACTAGCCATTCTAATAGCTA
76988725 CATTACTAGCCATTCTAATAGCTA
1 CATTACTAGCCATTCTAATAGCTA
*
76988749 GATTAC
1 CATTAC
76988755 AAGCATCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.33
Consensus pattern (24 bp):
CATTACTAGCCATTCTAATAGCTA
Found at i:76992475 original size:27 final size:28
Alignment explanation
Indices: 76992445--76992514 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
76992435 ATAGTGAATC
*
76992445 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
76992472 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
76992500 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76992515 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:76992586 original size:42 final size:42
Alignment explanation
Indices: 76992522--76992628 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
76992512 GCTGTACAAT
* *
76992522 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
76992564 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
76992606 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
76992629 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:76993883 original size:11 final size:10
Alignment explanation
Indices: 76993863--76993892 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
76993853 CATCCACACA
76993863 CTTTTTTTTT
1 CTTTTTTTTT
76993873 CTTTTTCTTTT
1 CTTTTT-TTTT
76993884 CTTTTTTTT
1 CTTTTTTTT
76993893 GTCAACATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:76994724 original size:39 final size:40
Alignment explanation
Indices: 76994629--76994831 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
76994619 TCGAATGATG
* *
76994629 TCCGGGCTAAGTCCCGAAGGC-TTTG-GCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
76994668 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
76994707 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
76994747 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * * **
76994787 ACCGGGCTATGTCTCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
76994827 TCCGG
1 TCCGG
76994832 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
39 55 0.39
40 84 0.60
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:76994765 original size:79 final size:80
Alignment explanation
Indices: 76994629--76994810 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
76994619 TCGAATGATG
* *
76994629 TCCGGGCTAAGTCCCGAAGGC-TTTGGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
76994693 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
76994707 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGG-GCTAAGTGACTAAATCCGGACTAAGATC-CGAAGGCA
76994769 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGTTACTATA
* * *
76994787 ACCGGGCTATGTCTCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
76994811 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 11 0.12
79 64 0.72
80 14 0.16
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:76994834 original size:79 final size:78
Alignment explanation
Indices: 76994630--76994845 Score: 210
Period size: 79 Copynumber: 2.7 Consensus size: 78
76994620 CGAATGATGT
* * * *
76994630 CCGGGCTAAGTCCCGAAGGCTTTGG--CTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTGGAAC-GAGTTACTATATCCGG-TTAAGATCCGAAGGCATTT
*
76994693 GTGCGAGTTACTAATT
63 GTGCGAGTTACTAATA
** *
76994709 CCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCATTTG
1 CCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTATATCC-GGTTAAGATC-CGAAGGCATTTG
76994773 TGCGAGTTACT-ATAA
64 TGCGAGTTACTAAT-A
* * *
76994788 CCGGGCTATGTCTCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAA-ATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTATATCCGGTTAAGA-TCCGAAGG
76994846 TACGTGATTC
Statistics
Matches: 116, Mismatches: 12, Indels: 18
0.79 0.08 0.12
Matches are distributed among these distances:
78 17 0.15
79 71 0.61
80 28 0.24
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTATATCCGGTTAAGATCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:77001079 original size:40 final size:40
Alignment explanation
Indices: 77001020--77001161 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
77001010 AAATTGAATG
* * *
77001020 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
77001060 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
77001100 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
77001140 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
77001162 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:77001162 original size:40 final size:39
Alignment explanation
Indices: 77001059--77001187 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
77001049 TGCTGGAAAT
* * *
77001059 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
77001099 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
77001139 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
77001179 TATATCCGG
1 TATATCCGG
77001188 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:77009120 original size:40 final size:40
Alignment explanation
Indices: 77009035--77009185 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
77009025 AATTGAATGA
* * * **
77009035 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTT
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
77009075 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
77009116 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
77009155 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
77009186 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 77 0.85
41 5 0.05
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:77009199 original size:40 final size:40
Alignment explanation
Indices: 77009075--77009201 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
77009065 CTGGAAATTT
* * * * *
77009075 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
77009115 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
77009155 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
77009195 TATCCGG
1 TATCCGG
77009202 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:77010854 original size:35 final size:35
Alignment explanation
Indices: 77010815--77010886 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
77010805 CATCTCCGGA
* *
77010815 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* *
77010850 GCTTGGAAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
77010885 GC
1 GC
77010887 GACCCTAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:77016035 original size:35 final size:35
Alignment explanation
Indices: 77015996--77016067 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
77015986 CATCTCCGGA
*
77015996 GCTTGGCAAATATGGAAA-GTAATCTTCAAAGATAT
1 GCTTGGCAAATAT-GAAAGGGAATCTTCAAAGATAT
*
77016031 GCTTGGCAAATATGAAAGGGGATCTTCAAAGATAT
1 GCTTGGCAAATATGAAAGGGAATCTTCAAAGATAT
77016066 GC
1 GC
77016068 GATCCTAGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 4 0.12
35 30 0.88
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGAAAGGGAATCTTCAAAGATAT
Found at i:77016156 original size:23 final size:24
Alignment explanation
Indices: 77016130--77016181 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
77016120 ATTTGATATC
77016130 TTGATAG-ATTTAGATCT-TAGCCA
1 TTGATAGTATTTAGATCTGTA-CCA
*
77016153 TTGAT-GTATTTCGATCTGTACCA
1 TTGATAGTATTTAGATCTGTACCA
77016176 TTGATA
1 TTGATA
77016182 TTGGGAAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 1 0.04
23 22 0.88
24 2 0.08
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.42
Consensus pattern (24 bp):
TTGATAGTATTTAGATCTGTACCA
Found at i:77017478 original size:29 final size:29
Alignment explanation
Indices: 77017418--77017479 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
77017408 AATTTATAAT
* *
77017418 AAAGCTTTCCAACCATCCTTCAAAAGGAA
1 AAAGCTTTCCAACAATCCTTCAAAAAGAA
* *
77017447 AAAGCTTTCCAATGAATTCTTCAAAAAGAA
1 AAAGCTTTCCAA-CAATCCTTCAAAAAGAA
77017477 AAA
1 AAA
77017480 CAAGAAAAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.47, C:0.21, G:0.10, T:0.23
Consensus pattern (29 bp):
AAAGCTTTCCAACAATCCTTCAAAAAGAA
Found at i:77026948 original size:2 final size:2
Alignment explanation
Indices: 77026941--77026970 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
77026931 CTAAAAATTG
77026941 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77026971 CTTATAAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77030045 original size:23 final size:23
Alignment explanation
Indices: 77029997--77030047 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
77029987 AATACATTAG
**
77029997 GTAAATTTTCATAAAAATCAGTT
1 GTAAATTTTCATAAAAATCACCT
*
77030020 GTAAATTTTGC-TAAAAATCCCCT
1 GTAAATTTT-CATAAAAATCACCT
77030043 GTAAA
1 GTAAA
77030048 GCTTTGGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (23 bp):
GTAAATTTTCATAAAAATCACCT
Found at i:77030383 original size:16 final size:17
Alignment explanation
Indices: 77030357--77030392 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
77030347 TATGTTCTCA
*
77030357 AAAACGTTTGTTTGCGT
1 AAAACGTTTGTTTCCGT
77030374 AAAACG-TTGTTTCCGT
1 AAAACGTTTGTTTCCGT
77030390 AAA
1 AAA
77030393 TTGTTTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (17 bp):
AAAACGTTTGTTTCCGT
Found at i:77034428 original size:27 final size:27
Alignment explanation
Indices: 77034390--77034444 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
77034380 CTTCGCTTAA
77034390 TTATGACAAATGTACTCTTATGGAGGG
1 TTATGACAAATGTACTCTTATGGAGGG
77034417 TTATGACAAATGTACTCTTATGGAGGG
1 TTATGACAAATGTACTCTTATGGAGGG
77034444 T
1 T
77034445 CTATTCCTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (27 bp):
TTATGACAAATGTACTCTTATGGAGGG
Found at i:77035801 original size:32 final size:32
Alignment explanation
Indices: 77035765--77035828 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
77035755 AATTGTATAC
77035765 AACAAAGCTTTTTCTCATAATATGGAATTTAA
1 AACAAAGCTTTTTCTCATAATATGGAATTTAA
77035797 AACAAAGCTTTTTCTCATAATATGGAATTTAA
1 AACAAAGCTTTTTCTCATAATATGGAATTTAA
77035829 CTTCTTTAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (32 bp):
AACAAAGCTTTTTCTCATAATATGGAATTTAA
Found at i:77050632 original size:40 final size:40
Alignment explanation
Indices: 77050577--77050744 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
77050567 TGAATGATAC
* *
77050577 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
77050617 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
77050657 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
77050697 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
77050737 CC-GGCTAA
1 CCGGGCTAA
77050745 ATTCGAAGAG
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:77064198 original size:40 final size:40
Alignment explanation
Indices: 77064096--77064262 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
77064086 AAATTGAATG
* * * * *
77064096 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
77064136 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
77064176 ATATCCGGGCTAAGACCCGAAGGC--TTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
77064215 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
77064255 ATATCCGG
1 ATATCCGG
77064263 TTATATTCCG
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
38 2 0.02
39 32 0.30
40 70 0.66
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:77068398 original size:78 final size:81
Alignment explanation
Indices: 77068264--77068444 Score: 237
Period size: 78 Copynumber: 2.3 Consensus size: 81
77068254 CGAATGATGT
* *
77068264 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
77068328 GTGCGAGTTACTA-AT
66 GTGCGAGTTACTATAA
* * * **
77068343 TCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
77068405 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
77068422 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
77068445 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.58
79 24 0.27
80 12 0.14
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:77068410 original size:40 final size:40
Alignment explanation
Indices: 77068263--77068446 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
77068253 TCGAATGATG
* * *
77068263 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
77068303 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
77068342 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77068381 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77068422 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77068447 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 23 0.18
39 21 0.17
40 72 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77071808 original size:124 final size:124
Alignment explanation
Indices: 77071586--77071810 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
77071576 GAATTATGTG
* * * * * *
77071586 AAATGAAATATGGATGTGTAATGATTATCGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATCGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
77071651 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGACCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
77071710 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATCGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
77071775 GCTAAGACCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGACCCGAAGACGATTA-TGCTAGAAATTATAT
77071811 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 3 0.03
124 84 0.97
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATCGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGACCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:77071853 original size:40 final size:41
Alignment explanation
Indices: 77071808--77071918 Score: 142
Period size: 40 Copynumber: 2.8 Consensus size: 41
77071798 CTGGAAATTA
* *
77071808 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-CGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTC-G-TAC
*
77071849 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCGTAC
77071888 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGC
77071919 ACGGGTTATA
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
39 5 0.08
40 58 0.91
41 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.21
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCGTAC
Found at i:77079552 original size:40 final size:39
Alignment explanation
Indices: 77079508--77079689 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
77079498 GTTCAAAACA
* * ** * *
77079508 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
77079548 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
77079588 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
77079627 CCTTCGGGCTTAGTCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
77079666 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
77079690 CTCGAACATT
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.69
40 40 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:77079619 original size:39 final size:39
Alignment explanation
Indices: 77079538--77079689 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
77079528 TATGGTAACC
* * * *
77079538 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
77079578 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
77079617 CGCACAATTGCCTTCGGGCTTAGTCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
77079656 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
77079690 CTCGAACATT
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:77081736 original size:32 final size:32
Alignment explanation
Indices: 77081694--77081794 Score: 96
Period size: 32 Copynumber: 3.2 Consensus size: 32
77081684 ATGTGGCTCT
*
77081694 AAGCCTTCAGTAGCGGTATTATAATTGGCACA
1 AAGCCATCAGTAGCGGTATTATAATTGGCACA
* * **
77081726 AAGCCATCAGTAACTGTATTATGTTTGGCACA
1 AAGCCATCAGTAGCGGTATTATAATTGGCACA
* * * *
77081758 TAGCCATCAG-CGACGGTAATATAATCGGCACA
1 AAGCCATCAGTAG-CGGTATTATAATTGGCACA
*
77081790 CAGCC
1 AAGCC
77081795 TTGGGTAAAT
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (32 bp):
AAGCCATCAGTAGCGGTATTATAATTGGCACA
Found at i:77081911 original size:22 final size:22
Alignment explanation
Indices: 77081863--77081927 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
77081853 GTAAATACGT
*
77081863 TTGGCACAAAGCCATAGTCAGG
1 TTGGCACAGAGCCATAGTCAGG
* ** *
77081885 ATGGCACAGAGCCATTTTTAGG
1 TTGGCACAGAGCCATAGTCAGG
* *
77081907 TTGGCATAGAGCCATAATCAG
1 TTGGCACAGAGCCATAGTCAG
77081928 ATTACGCGGC
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (22 bp):
TTGGCACAGAGCCATAGTCAGG
Found at i:77082336 original size:27 final size:27
Alignment explanation
Indices: 77082306--77082357 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
77082296 ACAGTCATTT
*
77082306 TACCCTACAAGGGTATTTCAGTAATCC
1 TACCCTACAAGGGTATCTCAGTAATCC
* *
77082333 TACCCTACAGGGGTATCTCGGTAAT
1 TACCCTACAAGGGTATCTCAGTAAT
77082358 TTTGCAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (27 bp):
TACCCTACAAGGGTATCTCAGTAATCC
Found at i:77082372 original size:27 final size:26
Alignment explanation
Indices: 77082342--77082601 Score: 229
Period size: 27 Copynumber: 9.7 Consensus size: 26
77082332 CTACCCTACA
* *
77082342 GGGGTATCTCGGTAATTTTGCAAACTG
1 GGGGTATTTCGGTAATTTTACAAA-TG
* *
77082369 GGGGTATTTCAGTAATTTCACAAATCG
1 GGGGTATTTCGGTAATTTTACAAAT-G
* *
77082396 GGAGTATTTTGGTAATTTTACAAATTG
1 GGGGTATTTCGGTAATTTTACAAA-TG
* *
77082423 GGGGTATTTTGATAA-TTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAAT-G
*
77082449 GGGGTATTTCAGTAATTTTACAAATTG
1 GGGGTATTTCGGTAATTTTACAAA-TG
*
77082476 GAGGTATTTCGGTAATTTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAAT-G
* * *
77082503 AGGGTATTTCGATAGTTTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAAT-G
* * * *
77082530 AGGGTA-TTCTAGTAATTTCACAAATTC
1 GGGGTATTTC-GGTAATTTTACAAA-TG
*
77082557 GGGGTATTTTC-GTAATTTTACAAATTA
1 GGGGTA-TTTCGGTAATTTTACAAA-TG
*
77082584 GGGGTATTTCGGTGATTT
1 GGGGTATTTCGGTAATTT
77082602 AGAAATTGGA
Statistics
Matches: 194, Mismatches: 28, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.01
26 30 0.15
27 157 0.81
28 3 0.02
29 3 0.02
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (26 bp):
GGGGTATTTCGGTAATTTTACAAATG
Found at i:77082410 original size:54 final size:53
Alignment explanation
Indices: 77082342--77082593 Score: 287
Period size: 54 Copynumber: 4.7 Consensus size: 53
77082332 CTACCCTACA
* * *
77082342 GGGGTATCTCGGTAATTTTGCAAACTGGGGGTATTTCAGTAATTTCACAAATC
1 GGGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAATC
* *
77082395 GGGAGTATTTTGGTAATTTTACAAATTGGGGGTATTT-TGATAATTT-ACAAATC
1 GGG-GTATTTCGGTAATTTTACAAATTGGGGGTATTTCAG-TAATTTCACAAATC
* * * *
77082448 GGGGGTATTTCAGTAATTTTACAAATTGGAGGTATTTCGGTAATTTTACAAATC
1 -GGGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAATC
* * * *
77082502 GAGGGTATTTCGATAGTTTTACAAATCGAGGGTA-TTCTAGTAATTTCACAAATTC
1 G-GGGTATTTCGGTAATTTTACAAATTGGGGGTATTTC-AGTAATTTCACAAA-TC
*
77082557 GGGGTATTTTC-GTAATTTTACAAATTAGGGGTATTTC
1 GGGGTA-TTTCGGTAATTTTACAAATTGGGGGTATTTC
77082594 GGTGATTTAG
Statistics
Matches: 167, Mismatches: 22, Indels: 18
0.81 0.11 0.09
Matches are distributed among these distances:
53 51 0.31
54 106 0.63
55 10 0.06
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (53 bp):
GGGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAATC
Found at i:77082472 original size:80 final size:81
Alignment explanation
Indices: 77082368--77082607 Score: 310
Period size: 80 Copynumber: 3.0 Consensus size: 81
77082358 TTTGCAAACT
*
77082368 GGGGGTATTTCAGTAATTTCACAAATCGGGAGTATTTTGGTAATTTTACAAATTGGGGGTATTTT
1 GGGGGTATTTCAGTAATTTCACAAATCGGGAGTATTTTGGTAATTTTACAAATTGGGGGTATTTC
77082433 GATA-ATTTACAAATC
66 GATAGATTTACAAATC
* * * * *
77082448 GGGGGTATTTCAGTAATTTTACAAAT-TGGAGGTATTTCGGTAATTTTACAAATCGAGGGTATTT
1 GGGGGTATTTCAGTAATTTCACAAATCGGGA-GTATTTTGGTAATTTTACAAATTGGGGGTATTT
*
77082512 CGATAGTTTTACAAATC
65 CGATAGATTTACAAATC
* * *
77082529 GAGGGTA-TTCTAGTAATTTCACAAATTCGGG-GTATTTTCGTAATTTTACAAATTAGGGGTATT
1 GGGGGTATTTC-AGTAATTTCACAAA-TCGGGAGTATTTTGGTAATTTTACAAATTGGGGGTATT
* *
77082592 TCGGT-GATTTAGAAAT
64 TCGATAGATTTACAAAT
77082608 TGGAAGTCTT
Statistics
Matches: 137, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.02
80 71 0.52
81 60 0.44
82 1 0.01
83 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (81 bp):
GGGGGTATTTCAGTAATTTCACAAATCGGGAGTATTTTGGTAATTTTACAAATTGGGGGTATTTC
GATAGATTTACAAATC
Found at i:77086179 original size:238 final size:238
Alignment explanation
Indices: 77085761--77086235 Score: 824
Period size: 238 Copynumber: 2.0 Consensus size: 238
77085751 AGCAGCTTAT
* * *
77085761 AGAGCAAAAAATAATAGACTCAAGGAAGGGGAAGAGAAATCTGCCTTGGGTTTTGCATCAAATTT
1 AGAGCAAAAAATAACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTACATCAAATTT
* * *
77085826 CAGTATTAAAATGAAAGTTGGAGTAGTGAAAGCTTTCTGCAATTCTGCCTTTATTTTCTGATTTG
66 CAGTATTAAAATAAAAGTTAGAGTAGTGAAAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTG
*
77085891 AACTTTGTGATTCGTAAACTTGAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGTCCAA
131 AACTTTGTGATTCGTAAACTTGAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGCCCAA
77085956 TCCATGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAAC
196 TCCATGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAAC
*
77085999 AGAGCAAAAAATCACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTACATCAAATTT
1 AGAGCAAAAAATAACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTACATCAAATTT
* * *
77086064 TAGTATTAAAATAAAAGTTAGAGTTGTGAGAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTG
66 CAGTATTAAAATAAAAGTTAGAGTAGTGAAAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTG
* *
77086129 AACTTTGTGATTTGTAAACTTGAATGATGATGTTGAATGGTTTTATTTTGGATTTGAATGCCCAA
131 AACTTTGTGATTCGTAAACTTGAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGCCCAA
*
77086194 TCCATGAGCTAAATCTCATTAGGTTGGAATTATTTGGGTGAA
196 TCCATGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAA
77086236 TTTTTACTAT
Statistics
Matches: 223, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
238 223 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (238 bp):
AGAGCAAAAAATAACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTACATCAAATTT
CAGTATTAAAATAAAAGTTAGAGTAGTGAAAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTG
AACTTTGTGATTCGTAAACTTGAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGCCCAA
TCCATGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAAC
Found at i:77092233 original size:41 final size:41
Alignment explanation
Indices: 77092176--77092269 Score: 161
Period size: 41 Copynumber: 2.3 Consensus size: 41
77092166 TGACTTGGGT
*
77092176 CACACGACCAGTCACACACCCATGTGCCAGCCCGTGTGCTA
1 CACACGACCAGTCACACACCCATGTGCCAGCCCGTGTGCCA
*
77092217 CACACGACCAGTCACACGCCCATGTGCCAGCCCGTGTGCCA
1 CACACGACCAGTCACACACCCATGTGCCAGCCCGTGTGCCA
*
77092258 CACATGACCAGT
1 CACACGACCAGT
77092270 AGACATACCC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.24, C:0.41, G:0.20, T:0.14
Consensus pattern (41 bp):
CACACGACCAGTCACACACCCATGTGCCAGCCCGTGTGCCA
Found at i:77095553 original size:40 final size:40
Alignment explanation
Indices: 77095509--77095734 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
77095499 TTTGATGTGT
* *
77095509 GTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
1 GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
* * * *
77095549 GTATCCAGGTTTAAAGACCCACAGGCTAT-ATGCTGGAATT
1 GTATCCGGGTTTAAAGACCCGCAGGCT-TCGTGCTGGAATG
*
77095589 GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGTTGGAATG
1 GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
* * * *
77095629 GAATCCGGGTTTAAAGACCCGCAGGCTAT-ATGATGGAATT
1 GTATCCGGGTTTAAAGACCCGCAGGCT-TCGTGCTGGAATG
77095669 GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
1 GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
* *
77095709 GAATCCGGG-TTAAAGACCCGTAGGCT
1 GTATCCGGGTTTAAAGACCCGCAGGCT
77095735 CATGTTAGAA
Statistics
Matches: 161, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 18 0.11
40 141 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
Found at i:77095641 original size:80 final size:80
Alignment explanation
Indices: 77095508--77095727 Score: 370
Period size: 80 Copynumber: 2.8 Consensus size: 80
77095498 ATTTGATGTG
* * * *
77095508 TGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATGGTATCCAGGTTTAAAGACCCACAG
1 TGTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGGTTTAAAGACCCACAG
*
77095573 GCTATATGCTGGAAT
66 GCTATATGATGGAAT
* *
77095588 TGTATCCGGGTTTAAAGACCCGCAGGCTTCGTGTTGGAATGGAATCCGGGTTTAAAGACCCGCAG
1 TGTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGGTTTAAAGACCCACAG
77095653 GCTATATGATGGAAT
66 GCTATATGATGGAAT
77095668 TGTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGG-TTAAAGACCC
1 TGTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGGTTTAAAGACCC
77095728 GTAGGCTCAT
Statistics
Matches: 132, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
79 10 0.08
80 122 0.92
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGGTTTAAAGACCCACAG
GCTATATGATGGAAT
Found at i:77106293 original size:43 final size:43
Alignment explanation
Indices: 77106245--77106347 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 43
77106235 ATCACATATT
* * *
77106245 AATGCCATTGTCCCAGACA-GTGTCTTATACGAAATCA-TATAAC
1 AATGCCAATGTCCCAGACATG-GTCTTACACGAAATCACAAT-AC
* * * *
77106288 GATGCCAATATCTCAGACATGGTCTTACACGTAATCACAATAC
1 AATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATAC
77106331 AATGCCAATGTCCCAGA
1 AATGCCAATGTCCCAGA
77106348 TAAGGTTTTA
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
43 45 0.94
44 3 0.06
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
AATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATAC
Found at i:77114101 original size:13 final size:13
Alignment explanation
Indices: 77114083--77114107 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77114073 CCCTTGAAAA
77114083 AATTAAAATTTGT
1 AATTAAAATTTGT
77114096 AATTAAAATTTG
1 AATTAAAATTTG
77114108 AAATGACAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
AATTAAAATTTGT
Found at i:77119371 original size:40 final size:40
Alignment explanation
Indices: 77119312--77119455 Score: 148
Period size: 40 Copynumber: 3.6 Consensus size: 40
77119302 CATTTGAATG
* * *
77119312 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TT
* *
77119352 ATGTCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTT
* ** * ***
77119392 ATATCCGGGCTAAGA-CCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTT
*
77119431 AAATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
77119456 ATGGTGCAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 32 0.36
40 55 0.62
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTT
Found at i:77119461 original size:40 final size:40
Alignment explanation
Indices: 77119355--77119501 Score: 199
Period size: 39 Copynumber: 3.7 Consensus size: 40
77119345 AGTGATTATG
* * * *** *
77119355 TCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATA
1 TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
77119395 TCCGGGCTAAGA-CCGAAGGCAATGGTGCAAGTTACCAAA
1 TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
77119434 TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
1 TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
* *
77119474 T-CGGGTTAAGACCCGAAGGCAATTGTGC
1 TCCGGGCTAAGACCCGAAGGCAATGGTGC
77119502 TTGTGGTTGT
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 57 0.59
40 40 0.41
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
Found at i:77119490 original size:79 final size:79
Alignment explanation
Indices: 77119355--77119501 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 79
77119345 AGTGATTATG
* * *** *
77119355 TCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCGAAGGCAATGG
1 TCCGGGCTAAGACCCGAAGGCAATCGTGCAAGTTACCAAATCCGGGCTAAGACCGAAGGCAATGG
77119420 TGCAAGTTACCAAA
66 TGCAAGTTACCAAA
* * *
77119434 TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAAT-CGGGTTAAGACCCGAAGGCAATT
1 TCCGGGCTAAGACCCGAAGGCAATCGTGCAAGTTACCAAATCCGGGCTAAGA-CCGAAGGCAATG
77119498 GTGC
65 GTGC
77119502 TTGTGGTTGT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 9 0.16
79 49 0.84
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19
Consensus pattern (79 bp):
TCCGGGCTAAGACCCGAAGGCAATCGTGCAAGTTACCAAATCCGGGCTAAGACCGAAGGCAATGG
TGCAAGTTACCAAA
Found at i:77127471 original size:40 final size:40
Alignment explanation
Indices: 77127388--77127536 Score: 208
Period size: 40 Copynumber: 3.7 Consensus size: 40
77127378 AGTGATTATG
* * * *** *
77127388 TCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATA
1 TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
*
77127428 TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGGTACCAAA
1 TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
77127468 TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
1 TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
* *
77127508 TCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TCCGGGCTAAGACCCGAAGGCAATGGTGC
77127537 TTGTGGTTGT
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.28, C:0.24, G:0.30, T:0.18
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
Found at i:77127551 original size:40 final size:40
Alignment explanation
Indices: 77127345--77127552 Score: 179
Period size: 40 Copynumber: 5.2 Consensus size: 40
77127335 CATTTGAATG
* * * *
77127345 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTT
* * *
77127385 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTT
* * *
77127425 ATATCCGGGCTAAGACCCGAAGGCAATGGTGC-A-AGGTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGT--T
* * * ****
77127465 AAATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTT
* * *
77127505 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTT
*
77127545 GTATCCGG
1 ATATCCGG
77127553 TTAAATCCCG
Statistics
Matches: 135, Mismatches: 27, Indels: 12
0.78 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 3 0.02
40 127 0.94
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTT
Found at i:77127551 original size:80 final size:79
Alignment explanation
Indices: 77127347--77127552 Score: 198
Period size: 80 Copynumber: 2.6 Consensus size: 79
77127337 TTTGAATGAT
* * * * * *
77127347 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATGTCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCT-GTGGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *** *
77127412 CGTGCGAGTTGTTAT
65 CGTGCAAGTTACCAA
* ** * *
77127427 ATCCGGGCTAAGACCCGAAGGCAATGGTGC-AAGGTACCAAATCCGGGCTAAGACCCGAAGGCAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTGTGGT--TATATCCGGGCTAAGACCCGAAGGCAA
*
77127491 TGGTGCAAGTTACCAA
64 TCGTGCAAGTTACCAA
* *
77127507 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTATCCGG
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC-TGTGGTTATATCCGG
77127553 TTAAATCCCG
Statistics
Matches: 98, Mismatches: 24, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
78 2 0.02
80 93 0.95
82 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (79 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTGTGGTTATATCCGGGCTAAGACCCGAAGGCAATC
GTGCAAGTTACCAA
Found at i:77131081 original size:21 final size:21
Alignment explanation
Indices: 77131057--77131098 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
77131047 TCATTTAAAT
77131057 CCTCAAAATTTTCATATAATC
1 CCTCAAAATTTTCATATAATC
77131078 CCTCAAAATTTTCATATAATC
1 CCTCAAAATTTTCATATAATC
77131099 ATGAACCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (21 bp):
CCTCAAAATTTTCATATAATC
Found at i:77134830 original size:13 final size:13
Alignment explanation
Indices: 77134809--77134839 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
77134799 GACTTAGAGG
*
77134809 CGTGCGACTCAAC
1 CGTGTGACTCAAC
77134822 CGTGTGACTCAAC
1 CGTGTGACTCAAC
77134835 CGTGT
1 CGTGT
77134840 CAGGCACACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.32, G:0.26, T:0.23
Consensus pattern (13 bp):
CGTGTGACTCAAC
Found at i:77136219 original size:44 final size:44
Alignment explanation
Indices: 77136154--77136327 Score: 184
Period size: 43 Copynumber: 4.1 Consensus size: 44
77136144 CATAGGATTT
* * *
77136154 TCGATA-TTGATTT-CATGTAAGACGACGTCTGGGACGTTAGCA
1 TCGATATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
*
77136196 TCGAT-TTTGTATTTACGTGTAAGACCACGTTTGGGACGTTGGCA
1 TCGATATTTG-ATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
*
77136240 TCG-TATTTGATTT-TGTGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATTTGATTTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCA
* * * *
77136282 TCGATATTTGA-TTACATGTAAAACCACGTCTGAGACGTTTGCA
1 TCGATATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
77136325 TCG
1 TCG
77136328 TACGAGCTTT
Statistics
Matches: 111, Mismatches: 11, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
41 1 0.01
42 37 0.33
43 40 0.36
44 33 0.30
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (44 bp):
TCGATATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:77136326 original size:43 final size:43
Alignment explanation
Indices: 77136154--77136327 Score: 178
Period size: 42 Copynumber: 4.1 Consensus size: 43
77136144 CATAGGATTT
* * *
77136154 TCGATA-TTGATTTCATGTAAGACGACGTCTGGGACGTTAGCA
1 TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
* *
77136196 TCGAT-TTTGTATTTACGTGTAAGACCACGTTTGGGACGTTGGCA
1 TCGATATTTG-A-TTACATGTAAGACCACGTCTGGGACGTTGGCA
***
77136240 TCG-TATTTGATTTTGTGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATTTGATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCA
* * *
77136282 TCGATATTTGATTACATGTAAAACCACGTCTGAGACGTTTGCA
1 TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
77136325 TCG
1 TCG
77136328 TACGAGCTTT
Statistics
Matches: 109, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 37 0.34
43 36 0.33
44 35 0.32
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
Found at i:77141888 original size:40 final size:40
Alignment explanation
Indices: 77141833--77141915 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
77141823 CAATATTTTC
77141833 CATTGATTGAATTCGCATACAATAATAGTTTTCAATCGAG
1 CATTGATTGAATTCGCATACAATAATAGTTTTCAATCGAG
77141873 CATTGATTGAATTCGCATACAATAATAGTTTTCAATCGAG
1 CATTGATTGAATTCGCATACAATAATAGTTTTCAATCGAG
77141913 CAT
1 CAT
77141916 CAAAATGGCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (40 bp):
CATTGATTGAATTCGCATACAATAATAGTTTTCAATCGAG
Found at i:77143951 original size:43 final size:42
Alignment explanation
Indices: 77143796--77143952 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 42
77143786 TCTGATTTCG
* *
77143796 TGTAAGACCACGTCTAGGACGTTGGCATCAATTTGGTATTTACG
1 TGTAAGACCACGTCTAGGACGTTGGCATCAATTT-TTA-TTACA
* ** * *
77143840 TGTAAAACCATATCTGGGACGTTGGCATC-ATTTTTGATTTCA
1 TGTAAGACCACGTCTAGGACGTTGGCATCAATTTTT-ATTACA
* *
77143882 TGTAAGACC-CTGTTTGGGACAG-TGGCATCAATATTTTATTACA
1 TGTAAGACCAC-GTCTAGGAC-GTTGGCATCAAT-TTTTATTACA
*
77143925 TGTAAGACCACGTCTAGAACGTTGGCAT
1 TGTAAGACCACGTCTAGGACGTTGGCAT
77143953 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 15, Indels: 15
0.75 0.12 0.12
Matches are distributed among these distances:
42 27 0.30
43 34 0.37
44 30 0.33
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCAATTTTTATTACA
Found at i:77153816 original size:29 final size:29
Alignment explanation
Indices: 77153783--77153855 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
77153773 GTGACGAGAT
77153783 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
77153812 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
77153841 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
77153856 AAGCTCGGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77161917 original size:28 final size:29
Alignment explanation
Indices: 77161834--77161915 Score: 130
Period size: 28 Copynumber: 2.9 Consensus size: 29
77161824 GGTGACGAGA
77161834 TTGGCACTAAGTGTGCGTGCTGGAAATAT
1 TTGGCACTAAGTGTGCGTGCTGGAAATAT
*
77161863 ATGGCACT-AGTGTGCGTGCTGGAAATAT
1 TTGGCACTAAGTGTGCGTGCTGGAAATAT
**
77161891 TTGGCACTAAGTGTGCAAGCTGGAA
1 TTGGCACTAAGTGTGCGTGCTGGAA
77161916 TACGGCACTG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 27 0.56
29 21 0.44
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
TTGGCACTAAGTGTGCGTGCTGGAAATAT
Found at i:77168874 original size:40 final size:40
Alignment explanation
Indices: 77168766--77169015 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
77168756 CGGGATTTAA
* * * * *
77168766 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77168806 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77168846 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77168886 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77168926 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77168966 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77169006 CCGGATATAT
1 CCGGATATAT
77169016 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77170954 original size:22 final size:21
Alignment explanation
Indices: 77170913--77170956 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
77170903 GAATGTGCAT
77170913 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
77170935 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
77170957 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:77178425 original size:40 final size:40
Alignment explanation
Indices: 77178368--77178552 Score: 275
Period size: 40 Copynumber: 4.6 Consensus size: 40
77178358 TGGATGATAA
* *
77178368 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
77178408 CTGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAT
77178448 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
77178488 TCGGGCTAAGACCCGACGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
77178528 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
77178553 AGCAAGTAGT
Statistics
Matches: 131, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 128 0.98
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77178509 original size:80 final size:80
Alignment explanation
Indices: 77178364--77178552 Score: 310
Period size: 80 Copynumber: 2.4 Consensus size: 80
77178354 TATTTGGATG
*
77178364 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCTCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCTGGGCTAAGCTCCGAAGGCA
77178429 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
77178444 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC-GGGCTAAGAC-CCGACGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-ATTCTGGGCTAAG-CTCCGAAGG
77178507 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
77178524 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
77178553 AGCAAGTAGT
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
80 97 0.95
81 5 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCTGGGCTAAGCTCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:77178567 original size:80 final size:80
Alignment explanation
Indices: 77178364--77178575 Score: 299
Period size: 80 Copynumber: 2.7 Consensus size: 80
77178354 TATTTGGATG
*
77178364 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCTGGGCTAAGCTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATATTC-GGGCTAAGCTCCGAAGG
77178427 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* * *
77178444 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATTCGGGCTAAGAC-CCGACGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATTCGGGCTAAG-CTCCGAAGG
77178507 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* *
77178524 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATTCGGGCTAA
77178576 ATCCCGAAGA
Statistics
Matches: 120, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
79 8 0.07
80 106 0.88
81 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATTCGGGCTAAGCTCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:77178851 original size:22 final size:21
Alignment explanation
Indices: 77178810--77178853 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
77178800 GAATGTGCAT
77178810 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
77178832 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
77178854 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:77179819 original size:40 final size:40
Alignment explanation
Indices: 77179763--77179987 Score: 337
Period size: 40 Copynumber: 5.6 Consensus size: 40
77179753 TGGATGATAA
* *
77179763 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
77179803 CCGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAT
* *
77179843 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
77179883 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
77179923 CCGGGCTAAGACTCGACGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
77179963 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
77179988 AGCAAGTAGT
Statistics
Matches: 168, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 165 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77179976 original size:120 final size:120
Alignment explanation
Indices: 77179763--77179994 Score: 378
Period size: 120 Copynumber: 1.9 Consensus size: 120
77179753 TGGATGATAA
*
77179763 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTG
* *
77179828 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAC
66 TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATAC
* *
77179883 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGACT-CGACGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAG-CTCCGAAGGCATT
*
77179946 TGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT
64 TGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT
77179995 AGTTATATTC
Statistics
Matches: 104, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
119 2 0.02
120 100 0.96
121 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTG
TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATAC
Found at i:77182471 original size:49 final size:49
Alignment explanation
Indices: 77182319--77182475 Score: 190
Period size: 49 Copynumber: 3.2 Consensus size: 49
77182309 GAGGTCACGT
*
77182319 GGCTACTACATGTACCGGAT-TATTGGTCGCATGTGTAGTACTAAGTGCA
1 GGCTACTACGTGTACCGGATAT-TTGGTCGCATGTGTAGTACTAAGTGCA
* * * * * *
77182368 GGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCA
1 GGCTACTACGTGTACCGGAT-A-TTTGGTCGCATGTGTAGTACTAAGTGCA
* * *
77182419 GGCTACTACGTGTGCTGGATATTTGGTCGCATGTGTAGTACTAAGTGTA
1 GGCTACTACGTGTACCGGATATTTGGTCGCATGTGTAGTACTAAGTGCA
77182468 GGCTACTA
1 GGCTACTA
77182476 TGCGTACCAG
Statistics
Matches: 89, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
49 48 0.54
50 1 0.01
51 39 0.44
52 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (49 bp):
GGCTACTACGTGTACCGGATATTTGGTCGCATGTGTAGTACTAAGTGCA
Found at i:77183728 original size:24 final size:24
Alignment explanation
Indices: 77183681--77183798 Score: 172
Period size: 23 Copynumber: 5.0 Consensus size: 24
77183671 GCTTTATCAT
*
77183681 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
77183706 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
77183730 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77183753 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77183776 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
77183799 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
23 47 0.53
24 27 0.31
25 14 0.16
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77183870 original size:9 final size:9
Alignment explanation
Indices: 77183856--77183930 Score: 78
Period size: 9 Copynumber: 7.9 Consensus size: 9
77183846 ATCTCGTGTG
77183856 CATATCATA
1 CATATCATA
*
77183865 CATATCATGG
1 CATATCAT-A
77183875 CATATCATA
1 CATATCATA
* *
77183884 CATGTCATTG
1 CATATCA-TA
77183894 CATATCATA
1 CATATCATA
*
77183903 CATATCATGTG
1 CATATCA--TA
77183914 CATATCATA
1 CATATCATA
77183923 CATATCAT
1 CATATCAT
77183931 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
9 31 0.57
10 15 0.28
11 8 0.15
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:77183879 original size:19 final size:19
Alignment explanation
Indices: 77183855--77183931 Score: 127
Period size: 19 Copynumber: 4.0 Consensus size: 19
77183845 CATCTCGTGT
77183855 GCATATCATACATATCATG
1 GCATATCATACATATCATG
* *
77183874 GCATATCATACATGTCATT
1 GCATATCATACATATCATG
77183893 GCATATCATACATATCATG
1 GCATATCATACATATCATG
77183912 TGCATATCATACATATCATG
1 -GCATATCATACATATCATG
77183932 TTTATCAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 34 0.64
20 19 0.36
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (19 bp):
GCATATCATACATATCATG
Found at i:77183883 original size:5 final size:5
Alignment explanation
Indices: 77183856--77183930 Score: 61
Period size: 5 Copynumber: 15.6 Consensus size: 5
77183846 ATCTCGTGTG
** *
77183856 CATAT CATA- CATAT CATGG CATAT CATA- CATGT CAT-T GCATAT CATA-
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT -CATAT CATAT
*
77183903 CATAT CATGT GCATAT CATA- CATAT CAT
1 CATAT CATAT -CATAT CATAT CATAT CAT
77183931 GTTTATCAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
4 16 0.29
5 35 0.62
6 5 0.09
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (5 bp):
CATAT
Found at i:77183997 original size:25 final size:25
Alignment explanation
Indices: 77183969--77184016 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77183959 ATGTATAAAC
* * *
77183969 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77183994 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
77184017 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77191824 original size:23 final size:23
Alignment explanation
Indices: 77191794--77191842 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
77191784 CCTAGCCTCT
77191794 TTTAATAACTGGGACATAAGCCC
1 TTTAATAACTGGGACATAAGCCC
*
77191817 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGACATAAGCCC
77191840 TTT
1 TTT
77191843 TGCACTTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (23 bp):
TTTAATAACTGGGACATAAGCCC
Found at i:77191913 original size:9 final size:9
Alignment explanation
Indices: 77191899--77191976 Score: 75
Period size: 9 Copynumber: 8.1 Consensus size: 9
77191889 ACATCTCGTG
77191899 TACATATCA
1 TACATATCA
77191908 TACATATCA
1 TACATATCA
*
77191917 TGGCATATCA
1 T-ACATATCA
*
77191927 TACATGTCA
1 TACATATCA
*
77191936 TGTGCATATCA
1 --TACATATCA
77191947 TACATATCA
1 TACATATCA
*
77191956 TGTGCATATCA
1 --TACATATCA
77191967 TACATATCA
1 TACATATCA
77191976 T
1 T
77191977 GTTTATCAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
9 33 0.59
10 8 0.14
11 15 0.27
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
TACATATCA
Found at i:77191928 original size:5 final size:5
Alignment explanation
Indices: 77191901--77191976 Score: 61
Period size: 5 Copynumber: 15.6 Consensus size: 5
77191891 ATCTCGTGTA
** * *
77191901 CATAT CATA- CATAT CATGG CATAT CATA- CATGT CATGT GCATAT CATA-
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT -CATAT CATAT
*
77191949 CATAT CATGT GCATAT CATA- CATAT CAT
1 CATAT CATAT -CATAT CATAT CATAT CAT
77191977 GTTTATCAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
4 15 0.26
5 34 0.60
6 8 0.14
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (5 bp):
CATAT
Found at i:77191944 original size:20 final size:20
Alignment explanation
Indices: 77191901--77191978 Score: 140
Period size: 20 Copynumber: 4.0 Consensus size: 20
77191891 ATCTCGTGTA
77191901 CATATCATACATATCATG-G
1 CATATCATACATATCATGTG
*
77191920 CATATCATACATGTCATGTG
1 CATATCATACATATCATGTG
77191940 CATATCATACATATCATGTG
1 CATATCATACATATCATGTG
77191960 CATATCATACATATCATGT
1 CATATCATACATATCATGT
77191979 TTATCAAAAT
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
19 17 0.30
20 39 0.70
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
CATATCATACATATCATGTG
Found at i:77191963 original size:11 final size:11
Alignment explanation
Indices: 77191910--77191967 Score: 54
Period size: 11 Copynumber: 5.7 Consensus size: 11
77191900 ACATATCATA
77191910 CATATCATG-G
1 CATATCATGTG
*
77191920 CATATCA--TA
1 CATATCATGTG
*
77191929 CATGTCATGTG
1 CATATCATGTG
*
77191940 CATATCA--TA
1 CATATCATGTG
77191949 CATATCATGTG
1 CATATCATGTG
77191960 CATATCAT
1 CATATCAT
77191968 ACATATCATG
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
9 14 0.38
10 7 0.19
11 16 0.43
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (11 bp):
CATATCATGTG
Found at i:77192043 original size:25 final size:25
Alignment explanation
Indices: 77192015--77192062 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
77192005 ATGTATAAAC
* *
77192015 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
77192040 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
77192063 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:77205109 original size:28 final size:27
Alignment explanation
Indices: 77205059--77205122 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
77205049 GCATCTGATA
* *
77205059 CTGATTCTG-TATTGGGCTTAGGCCCAC
1 CTGATTCTGTTAATGGGCTAAGG-CCAC
77205086 CTGATTCTGTTAATGGGCTAAGGCCAC
1 CTGATTCTGTTAATGGGCTAAGGCCAC
*
77205113 CTTA-TCTGTT
1 CTGATTCTGTT
77205123 TCTTTGTTGG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.18
27 16 0.48
28 11 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGATTCTGTTAATGGGCTAAGGCCAC
Found at i:77207860 original size:53 final size:53
Alignment explanation
Indices: 77207780--77207884 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 53
77207770 GGGTGTGTCA
*
77207780 TTTGTCTAGATAGATATGTAGCAATCGAGCTTTGAGAAACTCAAGTTTGTTCG
1 TTTGTCTAGATAGATAGGTAGCAATCGAGCTTTGAGAAACTCAAGTTTGTTCG
*
77207833 TTTGTCTAGATGGATAGGTAGCAATCGAGCTTTGAGAAACTCAAGTTTGTTC
1 TTTGTCTAGATAGATAGGTAGCAATCGAGCTTTGAGAAACTCAAGTTTGTTC
77207885 TGACTCAAGC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (53 bp):
TTTGTCTAGATAGATAGGTAGCAATCGAGCTTTGAGAAACTCAAGTTTGTTCG
Found at i:77208460 original size:12 final size:12
Alignment explanation
Indices: 77208443--77208479 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
77208433 AGTGGCAACA
77208443 GATCAAATTTTG
1 GATCAAATTTTG
77208455 GATCAAA-TTT-
1 GATCAAATTTTG
77208465 GATCAAATTTTG
1 GATCAAATTTTG
77208477 GAT
1 GAT
77208480 TAAACAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 7 0.30
11 6 0.26
12 10 0.43
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (12 bp):
GATCAAATTTTG
Found at i:77217621 original size:21 final size:21
Alignment explanation
Indices: 77217591--77217650 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
77217581 GCTTTTTCAA
77217591 TCTCAATCTCATTTTTCTTTC
1 TCTCAATCTCATTTTTCTTTC
* *
77217612 TCTCACTCTCTTTTTTCTTT-
1 TCTCAATCTCATTTTTCTTTC
*
77217632 T-TCAATTTC-TTTTTCTTTC
1 TCTCAATCTCATTTTTCTTTC
77217651 ATTTTTTCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
18 9 0.26
19 6 0.18
20 1 0.03
21 18 0.53
ACGTcount: A:0.10, C:0.27, G:0.00, T:0.63
Consensus pattern (21 bp):
TCTCAATCTCATTTTTCTTTC
Found at i:77219987 original size:27 final size:29
Alignment explanation
Indices: 77219943--77220005 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 29
77219933 AAACATATTA
77219943 AAAAT-ATGTAATAGACTAAGACACA-TT
1 AAAATCATGTAATAGACTAAGACACATTT
* * *
77219970 AAAATCATGTACTA-ACTATGACATATTT
1 AAAATCATGTAATAGACTAAGACACATTT
77219998 AAAA-CATG
1 AAAATCATG
77220006 CATTAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 18 0.58
28 13 0.42
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.29
Consensus pattern (29 bp):
AAAATCATGTAATAGACTAAGACACATTT
Found at i:77227014 original size:33 final size:35
Alignment explanation
Indices: 77226958--77227027 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
77226948 AATTCTACAG
* *
77226958 TTTTTAATTATGTCTTGATCATTAAGTG-TTTGCAT
1 TTTTTAATTATGACATGA-CATTAAGTGTTTTGCAT
*
77226993 TTTTTAATTATGACATG-CATTATGTGTTTTGCAT
1 TTTTTAATTATGACATGACATTAAGTGTTTTGCAT
77227027 T
1 T
77227028 AAATAAAGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 8 0.26
34 8 0.26
35 15 0.48
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.54
Consensus pattern (35 bp):
TTTTTAATTATGACATGACATTAAGTGTTTTGCAT
Found at i:77227153 original size:50 final size:49
Alignment explanation
Indices: 77227024--77227154 Score: 149
Period size: 50 Copynumber: 2.6 Consensus size: 49
77227014 ATGTGTTTTG
* *
77227024 CATTAAATAAAGTCATGCATTATA-TAACTCATGTTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTA-AGTAACTCAAGTTAGTTAAGTTTGCAT
* * * * *
77227073 CA-TAAATTATGACATGCTTTATGTAAAACTCAAGTTAGTTAAAGTTTTCAT
1 CATTAAATTAAGTCATGCATTAAGT--AACTCAAGTTAGTT-AAGTTTGCAT
77227124 CATTAAATTAAGTCATGCATTAAGTAACTCA
1 CATTAAATTAAGTCATGCATTAAGTAACTCA
77227155 TCTGTTCATT
Statistics
Matches: 66, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
48 16 0.24
49 2 0.03
50 19 0.29
51 11 0.17
52 18 0.27
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.37
Consensus pattern (49 bp):
CATTAAATTAAGTCATGCATTAAGTAACTCAAGTTAGTTAAGTTTGCAT
Found at i:77230992 original size:33 final size:33
Alignment explanation
Indices: 77230944--77231006 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
77230934 ATAGGCCCAC
* *
77230944 ACTGTTACTGCATAGGGCTTAGGCCCAGACTGT
1 ACTGTTACTGAATAGGGCTCAGGCCCAGACTGT
* *
77230977 ACTGTTATTGAATAGGGCTCAGGCCTAGAC
1 ACTGTTACTGAATAGGGCTCAGGCCCAGAC
77231007 CGTTACTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (33 bp):
ACTGTTACTGAATAGGGCTCAGGCCCAGACTGT
Found at i:77235789 original size:518 final size:515
Alignment explanation
Indices: 77234898--77235829 Score: 1169
Period size: 518 Copynumber: 1.8 Consensus size: 515
77234888 CCATTTAAAA
** * *
77234898 ATTTCCAGACAAGCTGGTTACTGCATCACTGTCGCCTTAAAAATCATATCTTGAGTTTCAAAACT
1 ATTTCCAGACAAGCTGGAAACTGCATCACTGTCGCCTTAAAAAGCATATCTCGAGTTTCAAAACT
* * * *
77234963 CAAAAATCAGTTTCGTAATTTTTCCCCGAAACTAGACTCATATGTCCATCTACAGATTTTTTTTA
66 CAAAAATCAGTTCCGTAAATTTTCCCCGAAACTAGACTCATATATCCATCTACAGATTTTTTCTA
** * * *
77235028 GAATTTTTGGTCGAGCCAATTAGTACAGTTTATTAGTTAAAGTCTCCCCTATTCCAAGGTTCGAC
131 GAATTTTTGGTCGAGCCAATTAGTACAGTTTATTAGTTAAAGTCAACCATATTACAAGGGTCGAC
* * *
77235093 TACACTGACCTTTATGCATTACGAATTGGATATCTTCCGGTACAGGTCTTCAATACTGATGCTGT
196 TACACTGACCTTTACGCATTACGAATTGAATATCTTCCGGTACAGGGCTTCAATACTGATGCTGT
* * * * *
77235158 TTGTTTCTTTAGAAACTAGACTCAAATAGGAATCTATACATATATGGCATGACTCCTAATCATCT
261 TTGTTCCTATAGAAACTAGACTCAAATAGGAATCTACACATACAAGGCATGACTCCTAATCATCT
* * * * * * *
77235223 CTGGTTAATTTACAATGAATTTCCAAAGTCGGAACAGGGGATCCAGAAATAGTTCTGGTCCTGTT
326 CTGGATAATTTACAATAAATTTCCAAAGTCGCAACAGGGGACCCAGAAACAGTTCTGGCCCTGTC
*
77235288 TTACGAGAACTTTAATATCTCTTAACATATAACTCATATTGTAACACCCCGAACCCGAGACCGTC
391 TCACGAGAACTTTAATATCTCTTAACATATAACTCATATTGTAACACCCCGAACCCGAGACCGTC
77235353 GCCGGTGTCGGACGCGAGGGGTTAACGAGCCAAATCCACATATTGACCGACCAATTTGAC
456 GCCGGTGTCGGACGCGAGGGGTTAACGAGCCAAATCCACATATTGACCGACCAATTTGAC
* *
77235413 ATTTCCAGACAAGCTGGAAATCTGCGTCACTGTCGCCTTAAAAAAGCATATCTCGAGTTTCACAA
1 ATTTCCAGACAAGCTGGAAA-CTGCATCACTGTCGCCTT-AAAAAGCATATCTCGAGTTTCAAAA
** * * ** * * *
77235478 CTCGGAAA-CTGATTCCGTAAATTTTCCCTGAATTTAGACTCATGTATCCATC-CCTGGATTTAT
64 CTCAAAAATCAG-TTCCGTAAATTTTCCCCGAAACTAGACTCATATATCCATCTAC-AGATTT-T
* * * *
77235541 TTCTAGAATTTTTGGTCGGGCCAATTGGTACAGTTTATTAGTTAAAGTCAACCATGTTACAGGGG
126 TTCTAGAATTTTTGGTCGAGCCAATTAGTACAGTTTATTAGTTAAAGTCAACCATATTACAAGGG
* * * * * *
77235606 TCGACTGCTCTGACCTTTGCGCGTTAC-AACTTGAATATC-TCTCTGTACAGGGCTTTAATACTG
191 TCGACTACACTGACCTTTACGCATTACGAA-TTGAATATCTTC-CGGTACAGGGCTTCAATACTG
* * * * *
77235669 GTGCTGTTTGTTCCTA-ATGAAAGTAGACTCAAA-ATGGAATCTGCACATACAAGGTATGACTTC
254 ATGCTGTTTGTTCCTATA-GAAACTAGACTCAAATA-GGAATCTACACATACAAGGCATGACTCC
* *** *
77235732 TAATTC-TTTCTGGATAATTTATGGTAAATATT-CAAAGTCGCAACAGGGGACCCAGAAACCGTT
317 TAA-TCATCTCTGGATAATTTACAATAAAT-TTCCAAAGTCGCAACAGGGGACCCAGAAACAGTT
77235795 CTGGCCCTGTCTCACGAGAACTTTAATATCTCTTA
380 CTGGCCCTGTCTCACGAGAACTTTAATATCTCTTA
77235830 GTATACTGTT
Statistics
Matches: 346, Mismatches: 60, Indels: 19
0.81 0.14 0.04
Matches are distributed among these distances:
515 18 0.05
516 20 0.06
517 72 0.21
518 232 0.67
519 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (515 bp):
ATTTCCAGACAAGCTGGAAACTGCATCACTGTCGCCTTAAAAAGCATATCTCGAGTTTCAAAACT
CAAAAATCAGTTCCGTAAATTTTCCCCGAAACTAGACTCATATATCCATCTACAGATTTTTTCTA
GAATTTTTGGTCGAGCCAATTAGTACAGTTTATTAGTTAAAGTCAACCATATTACAAGGGTCGAC
TACACTGACCTTTACGCATTACGAATTGAATATCTTCCGGTACAGGGCTTCAATACTGATGCTGT
TTGTTCCTATAGAAACTAGACTCAAATAGGAATCTACACATACAAGGCATGACTCCTAATCATCT
CTGGATAATTTACAATAAATTTCCAAAGTCGCAACAGGGGACCCAGAAACAGTTCTGGCCCTGTC
TCACGAGAACTTTAATATCTCTTAACATATAACTCATATTGTAACACCCCGAACCCGAGACCGTC
GCCGGTGTCGGACGCGAGGGGTTAACGAGCCAAATCCACATATTGACCGACCAATTTGAC
Found at i:77236841 original size:80 final size:79
Alignment explanation
Indices: 77236705--77236949 Score: 300
Period size: 80 Copynumber: 3.1 Consensus size: 79
77236695 CGGAATACAA
*
77236705 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATG
1 CCGGATATAA-CACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATG
77236770 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
* * *
77236785 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACGACTTGCCCGAATG
1 CCGGATATAAC-ACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATG
77236850 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
* * * * * ** * *
77236865 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATTACTAGCA-TAAT
1 CCGGATATA-ACACTTGCACGAA-TGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
*
77236928 --CTTCGGGACTTAGC
64 GCCTTCGGGTCTTAGC
77236942 CCGGATAT
1 CCGGATAT
77236950 CATTCAATTA
Statistics
Matches: 146, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
77 20 0.14
79 6 0.04
80 119 0.82
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGC
CTTCGGGTCTTAGC
Found at i:77236923 original size:40 final size:40
Alignment explanation
Indices: 77236705--77236910 Score: 299
Period size: 40 Copynumber: 5.2 Consensus size: 40
77236695 CGGAATACAA
* * *
77236705 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
77236745 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
77236785 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* *
77236825 CCGGATTTAACGACTTGCCCGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
77236865 CCGGATGTAGTC-ACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATTTA-ACAACTTGCACGAA-TGCCTTCGGGTCTTAGC
77236905 CCGGAT
1 CCGGAT
77236911 ATAATTACTA
Statistics
Matches: 154, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 151 0.98
41 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:77236945 original size:37 final size:39
Alignment explanation
Indices: 77236705--77236949 Score: 205
Period size: 40 Copynumber: 6.2 Consensus size: 39
77236695 CGGAATACAA
* *
77236705 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCAC-AATTCCTTCGGGTCTTAGC
* * *
77236745 CCGGATTTAA-CAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCAC-AATTCCTTCGGGTCTTAGC
* * *
77236785 CCGGATTTAA-CAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCAC-AATTCCTTCGGGTCTTAGC
* * * *
77236825 CCGGATTTAA-CGACTTGCCCGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCAC-AATTCCTTCGGGTCTTAGC
* * *
77236865 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATT-CCTTCGGGTCTTAGC
* * *
77236905 CCGGATATAATTACTAGCATAA-T-CTTCGGGACTTAGC
1 CCGGATATAATCACTAGCACAATTCCTTCGGGTCTTAGC
77236942 CCGGATAT
1 CCGGATAT
77236950 CATTCAATTA
Statistics
Matches: 186, Mismatches: 15, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
37 20 0.11
39 6 0.03
40 159 0.85
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAATTCCTTCGGGTCTTAGC
Found at i:77242247 original size:25 final size:25
Alignment explanation
Indices: 77242213--77242262 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
77242203 GCTCCCGAAT
77242213 GCCATTTGCCACAACGCAGACACTC
1 GCCATTTGCCACAACGCAGACACTC
77242238 GCCATTTGCCACAACGCAGACACTC
1 GCCATTTGCCACAACGCAGACACTC
77242263 CGCTCTCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.40, G:0.16, T:0.16
Consensus pattern (25 bp):
GCCATTTGCCACAACGCAGACACTC
Found at i:77244935 original size:39 final size:39
Alignment explanation
Indices: 77244824--77244961 Score: 153
Period size: 39 Copynumber: 3.6 Consensus size: 39
77244814 CACAATGCCG
*
77244824 ATGCCTTCGGGTCTTAGCCCGGATTAA-CACTTGCACGA
1 ATGCCTTCGGGTCTTAGCCCGGATTAATCACTAGCACGA
*
77244862 ATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCAC-A
1 ATGCCTTCGGGTCTTAGCCCGGAT-TAATCACTAGCACGA
* * *
77244901 ATTGCCTTC-GGTCTTAACCCGGATATAATTACTAGCA-TA
1 A-TGCCTTCGGGTCTTAGCCCGGAT-TAATCACTAGCACGA
*
77244940 AT--CTTCGGGACTTAGCCCGGAT
1 ATGCCTTCGGGTCTTAGCCCGGAT
77244962 ATCATTCAAT
Statistics
Matches: 87, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
36 4 0.05
37 13 0.15
38 25 0.29
39 30 0.34
40 15 0.17
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.28
Consensus pattern (39 bp):
ATGCCTTCGGGTCTTAGCCCGGATTAATCACTAGCACGA
Found at i:77247055 original size:35 final size:35
Alignment explanation
Indices: 77247016--77247086 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
77247006 AATACTTGAT
77247016 TGAAAACTATTGTTGTAAGCGAATTCAATCAAAGG
1 TGAAAACTATTGTTGTAAGCGAATTCAATCAAAGG
77247051 TGAAAACTATTGTTGTAAGCGAATTCAATCAAAGG
1 TGAAAACTATTGTTGTAAGCGAATTCAATCAAAGG
77247086 T
1 T
77247087 AAATATCATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (35 bp):
TGAAAACTATTGTTGTAAGCGAATTCAATCAAAGG
Found at i:77252614 original size:40 final size:39
Alignment explanation
Indices: 77252566--77252736 Score: 229
Period size: 39 Copynumber: 4.3 Consensus size: 39
77252556 ACGACTAGCT
*
77252566 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TAGTAACTCGCA
* *
77252606 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
*
77252646 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
*
77252685 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
77252724 CGAACGCCTTCGG
1 CAAATGCCTTCGG
77252737 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 73 0.60
40 45 0.37
41 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
Found at i:77252680 original size:39 final size:40
Alignment explanation
Indices: 77252566--77252789 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
77252556 ACGACTAGCT
*
77252566 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAA-CCCGGATT-TAGTAACTCGCA
* *
77252606 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
77252646 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
77252685 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * * * **
77252724 CGAACGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
77252765 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
77252790 CATCATTCAA
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 71 0.44
40 75 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:77255471 original size:28 final size:28
Alignment explanation
Indices: 77255431--77255517 Score: 120
Period size: 28 Copynumber: 3.1 Consensus size: 28
77255421 GCAATCAAAT
* *
77255431 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGAACTTAGTGTACGAAATATTGAGA
*
77255459 ATGGAACTTAGTGTACGAAATTTTGAGA
1 ATGGAACTTAGTGTACGAAATATTGAGA
* * *
77255487 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGAACTTAGTGTACGAAATATTGAGA
77255515 ATG
1 ATG
77255518 ACACTTCGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (28 bp):
ATGGAACTTAGTGTACGAAATATTGAGA
Found at i:77255522 original size:28 final size:28
Alignment explanation
Indices: 77255440--77255537 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
77255430 TATGGTACTC
77255440 AGTGTACGAAATATTGAGAATGGA-ACTT
1 AGTGTACGAAATATTGAGAAT-GACACTT
* *
77255468 AGTGTACGAAATTTTGAGAATGGCACTT
1 AGTGTACGAAATATTGAGAATGACACTT
* *
77255496 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
* * *
77255524 CGTGTGCAAAATAT
1 AGTGTACGAAATAT
77255538 CGAACGATTC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
27 1 0.02
28 59 0.98
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.30
Consensus pattern (28 bp):
AGTGTACGAAATATTGAGAATGACACTT
Found at i:77255680 original size:16 final size:16
Alignment explanation
Indices: 77255659--77255695 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
77255649 TGATATTCGG
77255659 GCTTTGAGCCTAGCAA
1 GCTTTGAGCCTAGCAA
77255675 GCTTTGAGCCTAGCAA
1 GCTTTGAGCCTAGCAA
77255691 GCTTT
1 GCTTT
77255696 AAGCTGGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (16 bp):
GCTTTGAGCCTAGCAA
Found at i:77255766 original size:43 final size:42
Alignment explanation
Indices: 77255712--77255793 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 42
77255702 GTGAATAATA
** * *
77255712 TTATCGCGCTTCGGGCCTAGCAGGCTATAATGTCGGTGAAATG
1 TTATCGCGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAAATG
*
77255755 TTATCGGGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAA
1 TTATCGCGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAA
77255794 TGAGTTCAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
42 11 0.32
43 23 0.68
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.24
Consensus pattern (42 bp):
TTATCGCGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAAATG
Found at i:77255872 original size:39 final size:40
Alignment explanation
Indices: 77255771--77255873 Score: 100
Period size: 39 Copynumber: 2.6 Consensus size: 40
77255761 GGCTTCAAGC
* * *
77255771 CTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAAGT
1 CTAGCAGGCTAAATGCCGGTG-ATGAATTCAGACTTAAAAT
*** * * **
77255812 CTAGCAGGCTTCGTGCTGGTGATGAATT-GGGTTTAAAAT
1 CTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAAT
77255851 CTAGCAGGCTAAATGCCGGTGAT
1 CTAGCAGGCTAAATGCCGGTGAT
77255874 TTGATAAAAG
Statistics
Matches: 48, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
39 26 0.54
40 6 0.12
41 16 0.33
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (40 bp):
CTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAAT
Found at i:77258927 original size:2 final size:2
Alignment explanation
Indices: 77258920--77258958 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
77258910 TTCAGCCTAT
77258920 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
77258959 TAGCTGATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:77259295 original size:66 final size:67
Alignment explanation
Indices: 77259166--77259295 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
77259156 GGGATGTATC
*
77259166 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
77259231 AGGACA
62 AGGACA
* *
77259237 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
77259296 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:77267265 original size:23 final size:25
Alignment explanation
Indices: 77267225--77267316 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
77267215 GTTCTATCCC
77267225 ACAGCTC-ATGTGAGCATACCGATTT
1 ACAGCTCGA-GTGAGCATACCGATTT
* *
77267250 ACAGCTC-A-TGAGCATACCAATCT
1 ACAGCTCGAGTGAGCATACCGATTT
*
77267273 ACAGCTCGAGTGAGCATACCGATTC
1 ACAGCTCGAGTGAGCATACCGATTT
77267298 ACAGCTCGTA-TGAGCATAC
1 ACAGCTCG-AGTGAGCATAC
77267317 ATGTAGAGGA
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
23 20 0.34
24 1 0.02
25 37 0.63
26 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (25 bp):
ACAGCTCGAGTGAGCATACCGATTT
Found at i:77272420 original size:37 final size:36
Alignment explanation
Indices: 77272371--77272447 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
77272361 TTTGATACAT
77272371 ATTTTCTTATTTGATTTCTTA-CTTTTCATTTATTTA
1 ATTTTCTTATTTGATTTCTTACCTTTT-ATTTATTTA
* *
77272407 ATTTTCCTTATTTGATTTCTTACCTTTTGTTTGTTTA
1 ATTTT-CTTATTTGATTTCTTACCTTTTATTTATTTA
77272444 ATTT
1 ATTT
77272448 CTTTTATGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
36 5 0.14
37 27 0.73
38 5 0.14
ACGTcount: A:0.17, C:0.12, G:0.05, T:0.66
Consensus pattern (36 bp):
ATTTTCTTATTTGATTTCTTACCTTTTATTTATTTA
Found at i:77274447 original size:39 final size:39
Alignment explanation
Indices: 77274393--77274471 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
77274383 AATTAATGAG
77274393 ACAAGAATTTACAATTCCAAACAAATTTCCATTTAAGTA
1 ACAAGAATTTACAATTCCAAACAAATTTCCATTTAAGTA
77274432 ACAAGAATTTACAATTCCAAACAAATTTCCATTTAAGTA
1 ACAAGAATTTACAATTCCAAACAAATTTCCATTTAAGTA
77274471 A
1 A
77274472 TCATTATCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.30
Consensus pattern (39 bp):
ACAAGAATTTACAATTCCAAACAAATTTCCATTTAAGTA
Found at i:77281652 original size:14 final size:15
Alignment explanation
Indices: 77281628--77281659 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
77281618 ATATTTTGTG
77281628 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
77281643 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
77281657 TTT
1 TTT
77281660 TTCGTGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:77282878 original size:43 final size:43
Alignment explanation
Indices: 77282828--77282913 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
77282818 TATGTGATTC
**
77282828 CGATATGTGTTTACAAGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATGTGACTACAAGTAAGACCAC-GTCTGGGAC-GTTGGCAT
*
77282871 CGATATGTGACTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGACTACAAGTAAGACCACGTCTGGGACGTTGGCAT
77282914 TGTACGATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (43 bp):
CGATATGTGACTACAAGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:77284549 original size:27 final size:25
Alignment explanation
Indices: 77284504--77284578 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
77284494 TTGCTCCTTT
**
77284504 TATATAT-ATTTGGCTATATATATA
1 TATATATAATTTGTTTATATATATA
** *
77284528 TATGCA-AATTTGTTCTGTATATATA
1 TATATATAATTTGTT-TATATATATA
77284553 TATATATAATTTGTTTATATATATA
1 TATATATAATTTGTTTATATATATA
77284578 T
1 T
77284579 TGGATTATGT
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
24 9 0.22
25 23 0.57
26 8 0.20
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.52
Consensus pattern (25 bp):
TATATATAATTTGTTTATATATATA
Found at i:77299646 original size:26 final size:26
Alignment explanation
Indices: 77299609--77299714 Score: 158
Period size: 26 Copynumber: 4.1 Consensus size: 26
77299599 GTACAAATTA
*
77299609 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGATTAGGTAAATGTTCCATG
* *
77299635 ATAATAGATTAGGTAAATATTCCATG
1 ATAATGGATTAGGTAAATGTTCCATG
*
77299661 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGATTAGGTAAATGTTCCATG
* *
77299687 ATAATGGTTTCGGTAAATGTTCCATG
1 ATAATGGATTAGGTAAATGTTCCATG
77299713 AT
1 AT
77299715 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
ATAATGGATTAGGTAAATGTTCCATG
Found at i:77299671 original size:52 final size:52
Alignment explanation
Indices: 77299609--77299714 Score: 176
Period size: 52 Copynumber: 2.0 Consensus size: 52
77299599 GTACAAATTA
77299609 ATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCATG
* * * *
77299661 ATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTCGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCATG
77299713 AT
1 AT
77299715 GGGCATTTCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (52 bp):
ATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCATG
Found at i:77302713 original size:51 final size:51
Alignment explanation
Indices: 77302651--77302753 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
77302641 ACTTAGTGAG
* * *
77302651 AAAACATATTCATTGGTAAATATAGCTCATTTCTCTAACTTTATCATTTCT
1 AAAACACATTCATTAGTAAATATAGCTCATTTCTCTAACTTCATCATTTCT
* * *
77302702 AAAACACATTCATTAGTAAATGTAGCTCATTTCTGTAACTTCATTATTTCT
1 AAAACACATTCATTAGTAAATATAGCTCATTTCTCTAACTTCATCATTTCT
77302753 A
1 A
77302754 TTCATTTGGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.42
Consensus pattern (51 bp):
AAAACACATTCATTAGTAAATATAGCTCATTTCTCTAACTTCATCATTTCT
Found at i:77312235 original size:33 final size:33
Alignment explanation
Indices: 77312193--77312260 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
77312183 TGAAAATGCC
77312193 TAGTTATGTACTTCATCACCAATCTTTGTATCA
1 TAGTTATGTACTTCATCACCAATCTTTGTATCA
77312226 TAGTTATGTACTTCATCACCAATCTTTGTATCA
1 TAGTTATGTACTTCATCACCAATCTTTGTATCA
77312259 TA
1 TA
77312261 CTTGCTCAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (33 bp):
TAGTTATGTACTTCATCACCAATCTTTGTATCA
Found at i:77318433 original size:19 final size:19
Alignment explanation
Indices: 77318398--77318446 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
77318388 TTGGACCGTT
77318398 ATGGGCCATGTTGGGCCAAA
1 ATGGGCCATGTTGGGCC-AA
*
77318418 ATGGGCCATG-TGGGCCTA
1 ATGGGCCATGTTGGGCCAA
77318436 ATGGGCTCATG
1 ATGGGC-CATG
77318447 GGCTCCACGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 7 0.26
19 10 0.37
20 10 0.37
ACGTcount: A:0.20, C:0.20, G:0.37, T:0.22
Consensus pattern (19 bp):
ATGGGCCATGTTGGGCCAA
Found at i:77318890 original size:27 final size:26
Alignment explanation
Indices: 77318850--77318923 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
77318840 ATGGAGGAAG
77318850 TACTGTACTGGTGGCTATGCCACAAT
1 TACTGTACTGGTGGCTATGCCACAAT
* *
77318876 TACTGATACTGGTGGCTTTGCCACACT
1 TACTG-TACTGGTGGCTATGCCACAAT
* *
77318903 TACTGTTTCTGGTAGCTATGC
1 TACTG-TACTGGTGGCTATGC
77318924 TGCATTATTA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 5 0.12
27 36 0.88
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
TACTGTACTGGTGGCTATGCCACAAT
Found at i:77324351 original size:27 final size:28
Alignment explanation
Indices: 77324293--77324351 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
77324283 TTCTACTATA
* **
77324293 CAGGGGTATTACGGTAATTTTACCCTAT
1 CAGGGGCATTACGGTAATTTTACCAAAT
*
77324321 -AGGGGCATTATGGTAATTTTA-CAAAT
1 CAGGGGCATTACGGTAATTTTACCAAAT
77324347 CAGGG
1 CAGGG
77324352 TCCTAACGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (28 bp):
CAGGGGCATTACGGTAATTTTACCAAAT
Found at i:77333303 original size:17 final size:17
Alignment explanation
Indices: 77333281--77333322 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
77333271 AGTCTGCATG
77333281 GGGCCCACGAGCCTATT
1 GGGCCCACGAGCCTATT
77333298 GGGCCCACGAGCCTATT
1 GGGCCCACGAGCCTATT
77333315 GGGCCCAC
1 GGGCCCAC
77333323 ACAACCCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.17, C:0.38, G:0.31, T:0.14
Consensus pattern (17 bp):
GGGCCCACGAGCCTATT
Found at i:77347308 original size:24 final size:25
Alignment explanation
Indices: 77347281--77347330 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
77347271 TGGTGTTTTT
*
77347281 TATTTTTATGT-AATTTTTTAAAAA
1 TATTTTTATGTAAAATTTTTAAAAA
* *
77347305 TATTTTTCTTTAAAATTTTTAAAAA
1 TATTTTTATGTAAAATTTTTAAAAA
77347330 T
1 T
77347331 TGAAGTGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (25 bp):
TATTTTTATGTAAAATTTTTAAAAA
Found at i:77349613 original size:19 final size:18
Alignment explanation
Indices: 77349589--77349650 Score: 63
Period size: 20 Copynumber: 3.3 Consensus size: 18
77349579 ATTATAGCCT
77349589 TTTTTATATTTTTTAATAC
1 TTTTTATATTTTTT-ATAC
77349608 TTTTTATATATATATTTATA-
1 TTTTTATAT-T-T-TTTATAC
* *
77349628 TTTTTATATGTTATATAC
1 TTTTTATATTTTTTATAC
77349646 TTTTT
1 TTTTT
77349651 TAAAAATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
17 5 0.14
18 6 0.16
19 9 0.24
20 10 0.27
21 4 0.11
22 3 0.08
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (18 bp):
TTTTTATATTTTTTATAC
Found at i:77349652 original size:19 final size:18
Alignment explanation
Indices: 77349587--77349652 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 18
77349577 ATATTATAGC
*
77349587 CTTTTTTATATTTTTTAATA
1 CTTTTTTATA-TTTAT-ATA
* *
77349607 CTTTTTATATATATATTTA
1 CTTTTT-TATATTTATATA
77349626 -TATTTTTATATGTTATATA
1 CT-TTTTTATAT-TTATATA
77349645 CTTTTTTA
1 CTTTTTTA
77349653 AAAATAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
18 6 0.16
19 17 0.46
20 10 0.27
21 4 0.11
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.67
Consensus pattern (18 bp):
CTTTTTTATATTTATATA
Found at i:77350704 original size:35 final size:35
Alignment explanation
Indices: 77350630--77350711 Score: 96
Period size: 35 Copynumber: 2.3 Consensus size: 35
77350620 AACTTTTAAT
* * *
77350630 TAAA-AAATTAATTTATTCTTGAATCTAAAGTAAA
1 TAAATAAATTAATTTATTCTTAAATCAAAAATAAA
*
77350664 TAAATAAATTAATTTATTTTTAAAT-AAAAATAAA
1 TAAATAAATTAATTTATTCTTAAATCAAAAATAAA
77350698 TAAAATACAATTAA
1 T-AAATA-AATTAA
77350712 ACTCACACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
34 12 0.29
35 23 0.56
36 6 0.15
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (35 bp):
TAAATAAATTAATTTATTCTTAAATCAAAAATAAA
Found at i:77351322 original size:32 final size:29
Alignment explanation
Indices: 77351250--77351326 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 29
77351240 TTGTTTTAAA
77351250 ATATTTAA-TTGGTATTTAAATTTTTTTT
1 ATATTTAAGTTGGTATTTAAATTTTTTTT
* *
77351278 ATGTTT-AGTTGGTATTTGAATTTCTATTTT
1 ATATTTAAGTTGGTATTTAAATTT-T-TTTT
77351308 ATCATTTAAGTTGGTATTT
1 AT-ATTTAAGTTGGTATTT
77351327 TTCCACTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 1 0.02
28 19 0.46
29 1 0.02
30 6 0.15
31 3 0.07
32 11 0.27
ACGTcount: A:0.25, C:0.03, G:0.13, T:0.60
Consensus pattern (29 bp):
ATATTTAAGTTGGTATTTAAATTTTTTTT
Found at i:77353918 original size:115 final size:113
Alignment explanation
Indices: 77353752--77353963 Score: 273
Period size: 115 Copynumber: 1.9 Consensus size: 113
77353742 AAGATTTTTT
* * * * *
77353752 TTGGGTGTTGGCCAGTAGATGGTCGGCACTAGCTACTTTTTTTGTGCCCCAATGCAATTTTTTTC
1 TTGGGTGCTGGCCAGTAGATGGCCGGCACCAGCTACTTTTTTTCTGCCCCAATG-AAATTTTTT-
* *
77353817 TTGCTTTGGTACACTGATGGCCGACACCAGAGATTTATAAAAAAAAAAAA
64 TGGCTTTGGTACACTGATGGCCGACACCAAAGATTTATAAAAAAAAAAAA
* * * *
77353867 TTGGGTGCTGGCTAGTAGATGGCCTGCACCAGGTA-TTTTTTTCCTGTCCCAATGAAATTTTTTT
1 TTGGGTGCTGGCCAGTAGATGGCCGGCACCAGCTACTTTTTTT-CTGCCCCAATGAAATTTTTTT
* *
77353931 GGCTTTGGTACACTGATGGGCGGCACCAAAGAT
65 GGCTTTGGTACACTGATGGCCGACACCAAAGAT
77353964 GTAAAATTTT
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
113 30 0.36
114 15 0.18
115 38 0.46
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (113 bp):
TTGGGTGCTGGCCAGTAGATGGCCGGCACCAGCTACTTTTTTTCTGCCCCAATGAAATTTTTTTG
GCTTTGGTACACTGATGGCCGACACCAAAGATTTATAAAAAAAAAAAA
Done.