Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 248 of 433
Found at i:77354240 original size:11 final size:11
Alignment explanation
Indices: 77354224--77354248 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
77354214 TCTATTTGAG
77354224 TTTTTGTTTGC
1 TTTTTGTTTGC
77354235 TTTTTGTTTGC
1 TTTTTGTTTGC
77354246 TTT
1 TTT
77354249 ATTAGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.16, T:0.76
Consensus pattern (11 bp):
TTTTTGTTTGC
Found at i:77355535 original size:18 final size:18
Alignment explanation
Indices: 77355512--77355547 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
77355502 TCGATTCAAG
77355512 TATAAAGTGTCACATCGA
1 TATAAAGTGTCACATCGA
*
77355530 TATAAAGTGTCATATCGA
1 TATAAAGTGTCACATCGA
77355548 AAGGCATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (18 bp):
TATAAAGTGTCACATCGA
Found at i:77363028 original size:40 final size:40
Alignment explanation
Indices: 77362982--77363058 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
77362972 TTAATTGATC
*
77362982 CAGGATCAGCCCATTCATACATTTGCATGAAATTGATATT
1 CAGGATCAACCCATTCATACATTTGCATGAAATTGATATT
77363022 CAGGATCAACCCATTCATACATTTGCATGAAATTGAT
1 CAGGATCAACCCATTCATACATTTGCATGAAATTGAT
77363059 GTCTAGCATG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (40 bp):
CAGGATCAACCCATTCATACATTTGCATGAAATTGATATT
Found at i:77366963 original size:46 final size:46
Alignment explanation
Indices: 77366810--77366967 Score: 199
Period size: 46 Copynumber: 3.4 Consensus size: 46
77366800 CAGGAGGTAA
* * * *
77366810 GAACCTAAACCTGTATTCTCTAGTTTGCAACATATGTAGGAGCTAG
1 GAACCTAAATCTGTATTCTCAAGTCTGCAACATATGTAGGAGCTGG
* * *
77366856 GAACCTAAACCTGTATTCTCAAGTCTACAACATATGCAGGAGCTGG
1 GAACCTAAATCTGTATTCTCAAGTCTGCAACATATGTAGGAGCTGG
* * *
77366902 GAACCTAAATCTGTATTCTCCAGTCTGCAACATATATAGGAACTGG
1 GAACCTAAATCTGTATTCTCAAGTCTGCAACATATGTAGGAGCTGG
* * *
77366948 GAACTTGAATATGTATTCTC
1 GAACCTAAATCTGTATTCTC
77366968 TAATCCTTAA
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 98 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (46 bp):
GAACCTAAATCTGTATTCTCAAGTCTGCAACATATGTAGGAGCTGG
Found at i:77366963 original size:92 final size:92
Alignment explanation
Indices: 77366809--77366997 Score: 229
Period size: 92 Copynumber: 2.1 Consensus size: 92
77366799 ACAGGAGGTA
* * * * *
77366809 AGAACCTAAACCTGTATTCTCTAGTTTGCAACATATGTAGGAGCTAGGAACCTAAACCTGTATTC
1 AGAACCTAAACCTGTATTCTCCAGTCTGCAACATATATAGGAACTAGGAACCTAAACATGTATTC
*
77366874 TC-AAGT-CTACAACATATGCAGGAGCTG
66 TCTAA-TCCT-CAACATATGCAAGAGCTG
* * * * * *
77366901 GGAACCTAAATCTGTATTCTCCAGTCTGCAACATATATAGGAACTGGGAACTTGAATATGTATTC
1 AGAACCTAAACCTGTATTCTCCAGTCTGCAACATATATAGGAACTAGGAACCTAAACATGTATTC
*
77366966 TCTAATCCTTAACATATGCAAGAGCTG
66 TCTAATCCTCAACATATGCAAGAGCTG
77366993 AGAAC
1 AGAAC
77366998 TTGGGCAAGA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
92 77 0.95
93 4 0.05
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (92 bp):
AGAACCTAAACCTGTATTCTCCAGTCTGCAACATATATAGGAACTAGGAACCTAAACATGTATTC
TCTAATCCTCAACATATGCAAGAGCTG
Found at i:77369212 original size:27 final size:27
Alignment explanation
Indices: 77369182--77369246 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
77369172 TAAATAGGGT
*
77369182 TGTAATGGAATAAGATTGTAATAGGAC
1 TGTAATGGAATAAGACTGTAATAGGAC
* *
77369209 TGTAATGAAATGAGACTGTAATAGGAC
1 TGTAATGGAATAAGACTGTAATAGGAC
*
77369236 TGCAATGGAAT
1 TGTAATGGAAT
77369247 GGAATAAGAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.40, C:0.06, G:0.26, T:0.28
Consensus pattern (27 bp):
TGTAATGGAATAAGACTGTAATAGGAC
Found at i:77376578 original size:20 final size:20
Alignment explanation
Indices: 77376544--77376594 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
77376534 AGGCTGAGAA
*
77376544 ATTATTTTTAT-TGTTTTAAT
1 ATTA-TTTTATGTGTTATAAT
*
77376564 ATTATTTTATGTGTTATAGT
1 ATTATTTTATGTGTTATAAT
*
77376584 ATGATTTTATG
1 ATTATTTTATG
77376595 AGTGCATGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.63
Consensus pattern (20 bp):
ATTATTTTATGTGTTATAAT
Found at i:77379101 original size:44 final size:41
Alignment explanation
Indices: 77378988--77379108 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 41
77378978 GTAATTTGGT
* * * *
77378988 ATCGAAGCCTCTGTTCCAGACAGGGTCTTACACGAAATTAG
1 ATCGAAGCCTATGTTCCAGACACGGTCTTACACGAAATCAA
* * * *
77379029 ATACGATGCCAATTTTCCAGACATGGTCTTACACGTAACTATCAA
1 AT-CGAAGCCTATGTTCCAGACACGGTCTTACACG-AA--ATCAA
*
77379074 ATCGAAGCCTGTGTTCCAGACACGGTCTTACACGA
1 ATCGAAGCCTATGTTCCAGACACGGTCTTACACGA
77379109 TATCTCAAAT
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
41 2 0.03
42 27 0.42
43 3 0.05
44 27 0.42
45 5 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (41 bp):
ATCGAAGCCTATGTTCCAGACACGGTCTTACACGAAATCAA
Found at i:77384889 original size:26 final size:26
Alignment explanation
Indices: 77384859--77384909 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
77384849 AACAATGATA
77384859 GCTTTTCATTCTTCAACAAAATCATT
1 GCTTTTCATTCTTCAACAAAATCATT
77384885 GCTTTTCATTCTTCAACAAAATCAT
1 GCTTTTCATTCTTCAACAAAATCAT
77384910 ATAAATTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.04, T:0.41
Consensus pattern (26 bp):
GCTTTTCATTCTTCAACAAAATCATT
Found at i:77386891 original size:20 final size:20
Alignment explanation
Indices: 77386868--77386907 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
77386858 TTAATTACGT
*
77386868 TAATTATTTATTATT-TAAAA
1 TAATTAATTA-TATTATAAAA
77386888 TAATTAATTATATTATAAAA
1 TAATTAATTATATTATAAAA
77386908 ATACATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTAATTATATTATAAAA
Found at i:77389700 original size:20 final size:21
Alignment explanation
Indices: 77389675--77389769 Score: 101
Period size: 20 Copynumber: 4.7 Consensus size: 21
77389665 TTCTAAATAA
77389675 GTGCTCTTGATAGCACTA-CG
1 GTGCTCTTGATAGCACTATCG
77389695 GTGCTCTTGATAGCA-TATTC-
1 GTGCTCTTGATAGCACTA-TCG
* * **
77389715 ATGCTCCTGATAGCAC-ATTT
1 GTGCTCTTGATAGCACTATCG
*
77389735 GTGCTCTTGTTAGCACTA-CG
1 GTGCTCTTGATAGCACTATCG
77389755 GTGCTCTTGATAGCA
1 GTGCTCTTGATAGCA
77389770 TATTCATGTT
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
19 3 0.05
20 56 0.92
21 2 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (21 bp):
GTGCTCTTGATAGCACTATCG
Found at i:77392333 original size:40 final size:40
Alignment explanation
Indices: 77392284--77392486 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
77392274 CAGAATTTAA
* * *
77392284 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
77392324 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77392364 CCGGATATAGTAACTCGCACGAATGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77392404 CCGGATATAATAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77392443 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
77392483 CCGG
1 CCGG
77392487 TTATCATCCG
Statistics
Matches: 145, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.23
40 110 0.76
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77394645 original size:43 final size:43
Alignment explanation
Indices: 77394586--77394668 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
77394576 ACCTATGTGA
* * *
77394586 CATCCGAGCTCGTTGAGAGGTCTGGGTTCATTATGGATGCGAG
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGCGAG
77394629 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGC
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGC
77394669 ATACATGTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (43 bp):
CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGCGAG
Found at i:77397268 original size:28 final size:28
Alignment explanation
Indices: 77397236--77397319 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
77397226 TATAGTACTC
* *
77397236 AGTGTACGAAAGATTGAGAATGGCACTT
1 AGTGTACGAAATATTGAGAATGACACTT
77397264 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
* *
77397292 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
77397320 CGTATGCAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (28 bp):
AGTGTACGAAATATTGAGAATGACACTT
Found at i:77397333 original size:28 final size:28
Alignment explanation
Indices: 77397236--77397336 Score: 130
Period size: 28 Copynumber: 3.6 Consensus size: 28
77397226 TATAGTACTC
* * *
77397236 AGTGTACGAAAGATTGAGAATGGCACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
77397264 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
77397292 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
* * *
77397320 CGTATGCAAAATATTGA
1 AGTGTGCGAAATATTGA
77397337 ATGATTCAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.28
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:77397654 original size:40 final size:41
Alignment explanation
Indices: 77397506--77397653 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 41
77397496 CGGGCTTTGG
* *
77397506 GCCTAGCAGGCTATAATGCCGGTGAAAT-TATATCGGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGCTTAAA
* * * * *
77397549 GCCTAGCAGGCGAAATGCTGGTGAATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
* *** *
77397590 GTCTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
*
77397630 ACCTAGCAGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
77397654 TTTGATAAAA
Statistics
Matches: 81, Mismatches: 22, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
40 31 0.38
41 28 0.35
42 10 0.12
43 12 0.15
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
Found at i:77400579 original size:26 final size:25
Alignment explanation
Indices: 77400533--77400581 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
77400523 AATGTATTGT
77400533 ATTTATTATTATTATAGATCTTATC
1 ATTTATTATTATTATAGATCTTATC
*
77400558 ATTTA-TATATATATATATATCTTA
1 ATTTATTAT-TAT-TATAGATCTTA
77400582 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 8 0.38
26 10 0.48
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (25 bp):
ATTTATTATTATTATAGATCTTATC
Found at i:77400815 original size:11 final size:11
Alignment explanation
Indices: 77400761--77400820 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
77400751 ATGTTTAATA
77400761 TTATATAT-TT
1 TTATATATATT
*
77400771 TTCATATATGTT
1 TT-ATATATATT
* *
77400783 ATATATAAGTCTT
1 TTATAT-A-TATT
77400796 TTAATATATATT
1 TT-ATATATATT
77400808 TTATATATATT
1 TTATATATATT
77400819 TT
1 TT
77400821 TTAATGTTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 2 0.05
11 21 0.51
12 9 0.22
13 5 0.12
14 4 0.10
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (11 bp):
TTATATATATT
Found at i:77400822 original size:25 final size:25
Alignment explanation
Indices: 77400762--77400825 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
77400752 TGTTTAATAT
* *
77400762 TATATA-TTTTTCATATATGTTATA
1 TATATATTTTTTAATATATATTATA
* *
77400786 TATA-AGTCTTTTAATATATATTTTA
1 TATATA-TTTTTTAATATATATTATA
77400811 TATATATTTTTTAAT
1 TATATATTTTTTAAT
77400826 GTTACTAGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.03
24 4 0.12
25 26 0.81
26 1 0.03
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (25 bp):
TATATATTTTTTAATATATATTATA
Found at i:77400878 original size:21 final size:23
Alignment explanation
Indices: 77400854--77400895 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
77400844 ATGTATACCT
77400854 CTAATA-TTATA-TTATATATTC
1 CTAATACTTATATTTATATATTC
*
77400875 CTAATACTTGTATTTATATAT
1 CTAATACTTATATTTATATAT
77400896 ATATGCATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 4 0.22
23 8 0.44
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (23 bp):
CTAATACTTATATTTATATATTC
Found at i:77404845 original size:12 final size:12
Alignment explanation
Indices: 77404828--77404863 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
77404818 AACATTTTGA
77404828 CATTCATACATT
1 CATTCATACATT
*
77404840 CATTCATGCATT
1 CATTCATACATT
*
77404852 CATCCATACATT
1 CATTCATACATT
77404864 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.39
Consensus pattern (12 bp):
CATTCATACATT
Found at i:77411557 original size:40 final size:40
Alignment explanation
Indices: 77411449--77411698 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
77411439 CGGGATTTAA
* * * * *
77411449 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77411489 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77411529 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77411569 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77411609 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77411649 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77411689 CCGGATATAT
1 CCGGATATAT
77411699 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77426574 original size:24 final size:24
Alignment explanation
Indices: 77426542--77426628 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
77426532 AATCTCAAAT
77426542 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
77426566 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
77426590 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
77426614 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
77426629 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:77426594 original size:48 final size:48
Alignment explanation
Indices: 77426542--77426650 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
77426532 AATCTCAAAT
** *
77426542 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
77426590 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
77426638 GCACTATGTGTGC
1 GCACTATGTGTGC
77426651 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:77426641 original size:24 final size:24
Alignment explanation
Indices: 77426542--77426650 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
77426532 AATCTCAAAT
*
77426542 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
77426566 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
77426590 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
77426614 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
77426638 GCACTATGTGTGC
1 GCACTATGTGTGC
77426651 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:77430396 original size:16 final size:17
Alignment explanation
Indices: 77430375--77430417 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
77430365 AAATTGAAAT
77430375 TATTATTTTTAGAAT-A
1 TATTATTTTTAGAATAA
* *
77430391 TATTATTCTTATAATAA
1 TATTATTTTTAGAATAA
77430408 TGATTATTTT
1 T-ATTATTTT
77430418 ATATTTTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 13 0.59
17 2 0.09
18 7 0.32
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (17 bp):
TATTATTTTTAGAATAA
Found at i:77434126 original size:2 final size:2
Alignment explanation
Indices: 77434119--77434156 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
77434109 GCTTCGCCAC
77434119 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77434157 CTGTTCTGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77435199 original size:107 final size:107
Alignment explanation
Indices: 77435046--77435255 Score: 343
Period size: 107 Copynumber: 2.0 Consensus size: 107
77435036 TGTGTGATTA
*
77435046 AATGATTATTTTGCCCTTATGTGGTAAAGTGACTATTTTGCCCTTATGTAGTAAAATGACTA-CT
1 AATGATTATTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTAGTAAAATGACTATCT
77435110 TGCCCTTATATGGT-AGAATGACTATTTTGCCCTTATGTGGTAG
66 TGCCCTTATATGGTAAG-ATGACTATTTTGCCC-TATGTGGTAG
* * *
77435153 AATGATTATTTTGCCCTTATGTGGTAAAATGATTATTTTGCCCTTATGTGGTAAAATGACTATTT
1 AATGATTATTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTAGTAAAATGACTATCT
*
77435218 TGCCCTTATATGGTAAGATGACTATTTTGGCCTATGTG
66 TGCCCTTATATGGTAAGATGACTATTTTGCCCTATGTG
77435256 ATGTATGTTT
Statistics
Matches: 96, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
107 65 0.68
108 29 0.30
109 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (107 bp):
AATGATTATTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTAGTAAAATGACTATCT
TGCCCTTATATGGTAAGATGACTATTTTGCCCTATGTGGTAG
Found at i:77435245 original size:27 final size:27
Alignment explanation
Indices: 77435006--77435255 Score: 310
Period size: 27 Copynumber: 9.4 Consensus size: 27
77434996 TACCTAGACC
*
77435006 CCCTT-TGTGGTAAAATGACTGTATTT-
1 CCCTTATGTGGTAAAATGACTAT-TTTG
* * * * *
77435032 CCCCTGTGTGATTAAATGATTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
*
77435059 CCCTTATGTGGTAAAGTGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* *
77435086 CCCTTATGTAGTAAAATGACTA-CTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* *
77435112 CCCTTATATGGTAGAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* *
77435139 CCCTTATGTGGTAGAATGATTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
*
77435166 CCCTTATGTGGTAAAATGATTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
77435193 CCCTTATGTGGTAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* *
77435220 CCCTTATATGGTAAGATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
*
77435247 GCC-TATGTG
1 CCCTTATGTG
77435256 ATGTATGTTT
Statistics
Matches: 195, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 34 0.17
27 161 0.83
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACTATTTTG
Found at i:77437422 original size:6 final size:6
Alignment explanation
Indices: 77437392--77437522 Score: 101
Period size: 6 Copynumber: 21.3 Consensus size: 6
77437382 AAGAAACATT
* * *
77437392 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAGGTG
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * *
77437442 AT-AGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAAA ATCAGA ATCA-A
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
77437489 TATCAGGTA AT-AGA ATCAGA ATCAGA ATCAGA AT
1 -ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA AT
77437523 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 12, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
5 8 0.08
6 81 0.81
7 5 0.05
8 5 0.05
9 1 0.01
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:77437450 original size:25 final size:25
Alignment explanation
Indices: 77437419--77437519 Score: 105
Period size: 25 Copynumber: 3.8 Consensus size: 25
77437409 AATGAGAATC
77437419 AGAATCAGAATCAGAATCAGGTGAT
1 AGAATCAGAATCAGAATCAGGTGAT
*
77437444 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATC------AGGTGAT
* *
77437475 AAAATCAGAATCA-ATATCAGGTAAT
1 AGAATCAGAATCAGA-ATCAGGTGAT
77437500 AGAATCAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
77437520 AATGTGAATG
Statistics
Matches: 63, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
25 40 0.63
26 1 0.02
30 1 0.02
31 21 0.33
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAT
Found at i:77437451 original size:31 final size:31
Alignment explanation
Indices: 77437413--77437522 Score: 142
Period size: 31 Copynumber: 3.7 Consensus size: 31
77437403 AATCAAAATG
77437413 AGAATCAGAATCAGAATCAGAATCAGGTGAT
1 AGAATCAGAATCAGAATCAGAATCAGGTGAT
* *
77437444 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTGAT
* *
77437475 AAAATCAGAATC--AAT----ATCAGGTAAT
1 AGAATCAGAATCAGAATCAGAATCAGGTGAT
77437500 AGAATCAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGAAT
77437523 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
25 18 0.27
27 3 0.05
29 3 0.05
31 42 0.64
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTGAT
Found at i:77438271 original size:80 final size:81
Alignment explanation
Indices: 77438138--77438296 Score: 239
Period size: 80 Copynumber: 2.0 Consensus size: 81
77438128 GGGCAAAATG
* *
77438138 GTAATTTTACCCCACAAGGGTATGTCAGTAATTCTACCCTACAGAGGTATTTCAGT-AGTCTACC
1 GTAATTCTACCCCACAAGGGTATGTCAATAATTCTACCCTACAGAGGTATTTCAGTAAGTCTACC
77438202 CTACAAGGGTATTTCA
66 CTACAAGGGTATTTCA
* * * * *
77438218 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
1 GTAATTCTACCCCACAAGGGTATGTCAATAATTCTACCCTACAGAGGTATTTCAGTAAGTCTACC
*
77438283 TTACAAGGGTATTT
66 CTACAAGGGTATTT
77438297 TAATAATTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 50 0.71
81 20 0.29
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (81 bp):
GTAATTCTACCCCACAAGGGTATGTCAATAATTCTACCCTACAGAGGTATTTCAGTAAGTCTACC
CTACAAGGGTATTTCA
Found at i:77438304 original size:27 final size:27
Alignment explanation
Indices: 77438138--77438296 Score: 223
Period size: 27 Copynumber: 5.9 Consensus size: 27
77438128 GGGCAAAATG
* * *
77438138 GTAATTTTACCCCACAAGGGTATGTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
77438165 GTAATTCTACCCTAC-AGAGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCA
*
77438192 GT-AGTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
77438218 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
77438245 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
77438272 GTAATTCTACCTTACAAGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
77438297 TAATAATTTT
Statistics
Matches: 119, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
26 24 0.20
27 95 0.80
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:77440313 original size:6 final size:6
Alignment explanation
Indices: 77440295--77440406 Score: 63
Period size: 6 Copynumber: 18.3 Consensus size: 6
77440285 AACAAACATT
* *
77440295 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCATA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * * * *
77440344 CTCAGA ATCAGA ATTAG- GTGACAGA AT-AGA ATCTGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
77440393 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
77440407 GTGAATGCAA
Statistics
Matches: 80, Mismatches: 14, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
5 10 0.12
6 58 0.73
7 9 0.11
8 3 0.04
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:77440374 original size:24 final size:25
Alignment explanation
Indices: 77440328--77440406 Score: 83
Period size: 24 Copynumber: 3.2 Consensus size: 25
77440318 AATCAGGTGA
*
77440328 CAGAATCA--TAATCAGACTCAGAAT
1 CAGAATCAGGTAA-CAGAATCAGAAT
* *
77440352 CAGAATTAGGTGACAGAAT-AGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
* *
77440376 CTGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
77440401 CAGAAT
1 CAGAAT
77440407 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
24 27 0.63
25 14 0.33
26 2 0.05
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (25 bp):
CAGAATCAGGTAACAGAATCAGAAT
Found at i:77440403 original size:19 final size:19
Alignment explanation
Indices: 77440309--77440376 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
77440299 GAACTAGAAT
77440309 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
* *
77440328 CAGAATCATAATCAGACT--
1 CAGAATCAGAATCAG-GTGA
*
77440346 CAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGGTGA
77440365 CAGAAT-AGAATC
1 CAGAATCAGAATC
77440377 TGTATCAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
17 1 0.03
18 18 0.45
19 20 0.50
20 1 0.03
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:77441022 original size:27 final size:27
Alignment explanation
Indices: 77440979--77441110 Score: 178
Period size: 27 Copynumber: 5.0 Consensus size: 27
77440969 AGGGCAAAAT
* * *
77440979 GGTAATT-TACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
77441005 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
77441032 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
77441059 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
77441086 AGT-ATTCTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
77441111 TAATAATTTT
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 28 0.30
27 65 0.70
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:77441118 original size:53 final size:54
Alignment explanation
Indices: 77441007--77441118 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 54
77440997 GGTATCTCGG
* **
77441007 TAATTCTACCCTACAAGGGTATTTTGATATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTAGATATTTCTACCCTACAAGGGTATTTCAA
* *
77441061 TAATTCTACCCTACAGGGGTATTTCAG-TA-TTCTACCCTACAAGGGTATTTTAA
1 TAATTCTACCCTACAAGGGTATTT-AGATATTTCTACCCTACAAGGGTATTTCAA
77441114 TAATT
1 TAATT
77441119 TTGTAAATCG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
53 26 0.50
54 25 0.48
55 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTAGATATTTCTACCCTACAAGGGTATTTCAA
Found at i:77441144 original size:27 final size:27
Alignment explanation
Indices: 77441114--77441188 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 27
77441104 GGTATTTTAA
77441114 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAATGG
* * ***
77441141 TAATTCTGTAAATTGAGGGTACTTTGG
1 TAATTTTGTAAATCGAGGGTAAAATGG
** *
77441168 TAATTTTACAAGTCGAGGGTA
1 TAATTTTGTAAATCGAGGGTA
77441189 TTTTAGTAAT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (27 bp):
TAATTTTGTAAATCGAGGGTAAAATGG
Found at i:77443173 original size:6 final size:6
Alignment explanation
Indices: 77443131--77443243 Score: 81
Period size: 6 Copynumber: 18.3 Consensus size: 6
77443121 AAGAAACATT
* *
77443131 ATCAGA A-CTAGA ATCAAA ATCAGA ATCA-A GTGACAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * * *
77443180 ATCAGA ATTAGA ATTAG- GTGACAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
77443230 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
77443244 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 10, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
5 6 0.07
6 68 0.79
7 8 0.09
8 4 0.05
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:77443173 original size:37 final size:37
Alignment explanation
Indices: 77443131--77443220 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 37
77443121 AAGAAACATT
77443131 ATCAGAA-CTAGAATCAAAATCAGAATCAAGTGACAGA
1 ATCAGAATC-AGAATCAAAATCAGAATCAAGTGACAGA
* * * *
77443168 ATCAGAATCAGAATCAGAATTAGAATTAGGTGACAGA
1 ATCAGAATCAGAATCAAAATCAGAATCAAGTGACAGA
*
77443205 ATCAGAATCAGTATCA
1 ATCAGAATCAGAATCA
77443221 GGTAACAGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 46 0.98
38 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (37 bp):
ATCAGAATCAGAATCAAAATCAGAATCAAGTGACAGA
Found at i:77443204 original size:25 final size:25
Alignment explanation
Indices: 77443176--77443243 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
77443166 GAATCAGAAT
* * *
77443176 CAGAATCAGAATTAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
77443201 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
77443226 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
77443244 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.21
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:77443236 original size:31 final size:30
Alignment explanation
Indices: 77443140--77443243 Score: 95
Period size: 31 Copynumber: 3.4 Consensus size: 30
77443130 TATCAGAACT
* *
77443140 AGAATCAAAATCAGAATCAAGTGACAGAATC
1 AGAATCAGAATCAGAATC-AGTAACAGAATC
* * *
77443171 AGAATCAGAATCAGAATTAG-AATTAG-GTGAC
1 AGAATCAGAATCAGAATCAGTAA-CAGAAT--C
*
77443202 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCA-GTAACAGAATC
77443233 AGAATCAGAAT
1 AGAATCAGAAT
77443244 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
29 2 0.03
30 4 0.07
31 46 0.79
32 3 0.05
33 3 0.05
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGTAACAGAATC
Found at i:77443977 original size:26 final size:27
Alignment explanation
Indices: 77443839--77443978 Score: 201
Period size: 27 Copynumber: 5.2 Consensus size: 27
77443829 GGGCAAAATG
* * * *
77443839 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
**
77443866 GTAATTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
77443893 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
77443920 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
77443947 GTAATTCTACCCTAC-AGGATATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
77443973 ATAATT
1 GTAATT
77443979 TTGTAAATCG
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
26 15 0.14
27 90 0.86
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:77446045 original size:25 final size:25
Alignment explanation
Indices: 77446011--77446065 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
77446001 CTCATATGAG
* * *
77446011 CTTATCGATTTGTATCTCGTTAGAC
1 CTTACCGATTTGCAGCTCGTTAGAC
*
77446036 CTTACCGATTTGCAGCTCGTTAGAG
1 CTTACCGATTTGCAGCTCGTTAGAC
77446061 CTTAC
1 CTTAC
77446066 TAGTTTCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (25 bp):
CTTACCGATTTGCAGCTCGTTAGAC
Found at i:77454264 original size:46 final size:46
Alignment explanation
Indices: 77454124--77454333 Score: 191
Period size: 46 Copynumber: 4.6 Consensus size: 46
77454114 GTGTGCTAGG
** * * *
77454124 GTAAGACATGTCT-GGACAT-GCATCAACCAC-ATTATGAGAGCTAGT
1 GTAAGACATGTCTGGGACATGGCATCGGCCTCGA-GATGA-AGCCAGT
* * * *
77454169 GTAAGACTATGTCTGGGACATGGCATCAGCATTGAGATGAGAGCTAGT
1 GTAAGAC-ATGTCTGGGACATGGCATCGGCCTCGAGATGA-AGCCAGT
*
77454217 GTAAGACATGCCTGGGACAT-GCATCGGCCTCGAGATGTAAGCCAGT
1 GTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATG-AAGCCAGT
* * *
77454263 GTAAGACATGTTTGGGACAT-GCAGCGG-CTACGAGATG-CGCCAGT
1 GTAAGACATGTCTGGGACATGGCATCGGCCT-CGAGATGAAGCCAGT
77454307 GTAAGACCATGTCTGGGACATGGCATC
1 GTAAGA-CATGTCTGGGACATGGCATC
77454334 TGTAACAGCC
Statistics
Matches: 141, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
44 12 0.09
45 22 0.16
46 61 0.43
47 19 0.13
48 26 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGAAGCCAGT
Found at i:77455573 original size:43 final size:43
Alignment explanation
Indices: 77455488--77455611 Score: 171
Period size: 43 Copynumber: 2.9 Consensus size: 43
77455478 TTGAATTTGA
* *
77455488 GGCACTAAGTGTTCGATA-AATGAAATAG-CTACGGCTAATTAATT
1 GGCACTAAGTGTGCGATACAAT--TATAGCCT-CGGCTAATTAATT
*
77455532 GGCACTAAGTGTGCGATACAATTATAGCCTTGGCTAATTAATT
1 GGCACTAAGTGTGCGATACAATTATAGCCTCGGCTAATTAATT
*
77455575 GGTACTAAGTGTGCGATACAATTATAGCCTCGGCTAA
1 GGCACTAAGTGTGCGATACAATTATAGCCTCGGCTAA
77455612 GTGTGCGATA
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
43 51 0.70
44 19 0.26
45 3 0.04
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (43 bp):
GGCACTAAGTGTGCGATACAATTATAGCCTCGGCTAATTAATT
Found at i:77455612 original size:29 final size:29
Alignment explanation
Indices: 77455579--77455640 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
77455569 TTAATTGGTA
77455579 CTAAGTGTGCGATACAATTATAGCCTCGG
1 CTAAGTGTGCGATACAATTATAGCCTCGG
*
77455608 CTAAGTGTGCGATACAATTTTAGCCTCGG
1 CTAAGTGTGCGATACAATTATAGCCTCGG
77455637 CTAA
1 CTAA
77455641 TTAATTGGCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (29 bp):
CTAAGTGTGCGATACAATTATAGCCTCGG
Found at i:77455654 original size:72 final size:72
Alignment explanation
Indices: 77455536--77455683 Score: 260
Period size: 72 Copynumber: 2.1 Consensus size: 72
77455526 TTAATTGGCA
* * *
77455536 CTAAGTGTGCGATACAATTATAGCCTTGGCTAATTAATTGGTACTAAGTGTGCGATACAATTATA
1 CTAAGTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTAAGTGTGCAATACAATTATA
77455601 GCCTCGG
66 GCCTCGG
*
77455608 CTAAGTGTGCGATACAATTTTAGCCTCGGCTAATTAATTGGCACTAAGTGTGCAATACAATTATA
1 CTAAGTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTAAGTGTGCAATACAATTATA
77455673 GCCTCGG
66 GCCTCGG
77455680 CTAA
1 CTAA
77455684 TTAATTGGCA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (72 bp):
CTAAGTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTAAGTGTGCAATACAATTATA
GCCTCGG
Found at i:77455657 original size:43 final size:43
Alignment explanation
Indices: 77455608--77455748 Score: 201
Period size: 43 Copynumber: 3.3 Consensus size: 43
77455598 ATAGCCTCGG
*
77455608 CTAAGTGTGCGATACAATTTTAGCCTCGGCTAATTAATTGGCA
1 CTAAGTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCA
*
77455651 CTAAGTGTGCAATACAATTATAGCCTCGGCTAATTAATTGGCA
1 CTAAGTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCA
* * * ** *
77455694 CTAATTGTGTGATACAATTATAGCTTTAGCTAATTAATCGGCA
1 CTAAGTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCA
*
77455737 CTACGTGTGCGA
1 CTAAGTGTGCGA
77455749 GTTCGTTGAA
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (43 bp):
CTAAGTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCA
Found at i:77455726 original size:115 final size:115
Alignment explanation
Indices: 77455519--77455726 Score: 344
Period size: 115 Copynumber: 1.8 Consensus size: 115
77455509 GAAATAGCTA
* * *
77455519 CGGCTAATTAATTGGCACTAAGTGTGCGATACAATTATAGCCTTGGCTAATTAATTGGTACTAAG
1 CGGCTAATTAATTGGCACTAAGTGTGCAATACAATTATAGCCTCGGCTAATTAATTGGCACTAAG
*
77455584 TGTGCGATACAATTATAGCCTCGGCTAAGTGTGCGATACAATTTTAGCCT
66 TGTGCGATACAATTATAGCCTCAGCTAAGTGTGCGATACAATTTTAGCCT
*
77455634 CGGCTAATTAATTGGCACTAAGTGTGCAATACAATTATAGCCTCGGCTAATTAATTGGCACTAAT
1 CGGCTAATTAATTGGCACTAAGTGTGCAATACAATTATAGCCTCGGCTAATTAATTGGCACTAAG
* * *
77455699 TGTGTGATACAATTATAGCTTTAGCTAA
66 TGTGCGATACAATTATAGCCTCAGCTAA
77455727 TTAATCGGCA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
115 85 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (115 bp):
CGGCTAATTAATTGGCACTAAGTGTGCAATACAATTATAGCCTCGGCTAATTAATTGGCACTAAG
TGTGCGATACAATTATAGCCTCAGCTAAGTGTGCGATACAATTTTAGCCT
Found at i:77462718 original size:11 final size:11
Alignment explanation
Indices: 77462702--77462757 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77462692 CATGGTATGT
77462702 ATGATATGCAC
1 ATGATATGCAC
*
77462713 ATGATATG--T
1 ATGATATGCAC
*
77462722 ATGCTATGCAC
1 ATGATATGCAC
*
77462733 ATGATATG--T
1 ATGATATGCAC
77462742 ATGATATGCAC
1 ATGATATGCAC
77462753 ATGAT
1 ATGAT
77462758 GTATTCACAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:77462720 original size:20 final size:20
Alignment explanation
Indices: 77462691--77462757 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
77462681 ATTTTAGTAA
*
77462691 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
77462711 ACATGATATGTATGCTATGC
1 ACATGATATGTATGATATGC
77462731 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
77462751 ACATGAT
1 ACATGAT
77462758 GTATTCACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:77462875 original size:46 final size:47
Alignment explanation
Indices: 77462808--77462903 Score: 167
Period size: 47 Copynumber: 2.1 Consensus size: 47
77462798 AGGAAGTGCA
*
77462808 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATT
*
77462854 AAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATT
77462901 AAA
1 AAA
77462904 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 23 0.49
47 24 0.51
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATT
Found at i:77462886 original size:24 final size:24
Alignment explanation
Indices: 77462807--77462924 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
77462797 AAGGAAGTGC
77462807 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
77462831 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
77462854 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
77462877 AAAAGAGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
77462901 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77462925 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 46 0.53
24 30 0.35
25 10 0.12
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:77463156 original size:31 final size:31
Alignment explanation
Indices: 77463118--77463181 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
77463108 CGTTTACAGT
77463118 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* **
77463149 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
77463180 AA
1 AA
77463182 TATGAAAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:77468413 original size:27 final size:28
Alignment explanation
Indices: 77468357--77468426 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
77468347 AAACTTGTAC
77468357 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
77468385 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
77468412 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77468427 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:77468437 original size:27 final size:27
Alignment explanation
Indices: 77468357--77468438 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
77468347 AAACTTGTAC
* *
77468357 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
77468385 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
77468412 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
77468439 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:77472871 original size:39 final size:39
Alignment explanation
Indices: 77472740--77472930 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
77472730 GGATATAACG
* ** **
77472740 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
77472780 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
77472820 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
77472858 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
77472898 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
77472931 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:77472875 original size:78 final size:80
Alignment explanation
Indices: 77472780--77472930 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
77472770 GGTTATAGCG
* * * *
77472780 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
77472842 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
77472858 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
77472923 AGCCCGGA
66 AGCCCGGA
77472931 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:77484042 original size:79 final size:80
Alignment explanation
Indices: 77483877--77484124 Score: 367
Period size: 79 Copynumber: 3.1 Consensus size: 80
77483867 CGGGATTTAA
* * * * * * * * * * *
77483877 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGT-GACTTGCACAAAG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACGAAT
77483941 GCCTTCGGGTCTTAGC
65 GCCTTCGGGTCTTAGC
77483957 CC-GATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCC-GATATATCAACTCGCACGAATG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATG
77484020 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGC
77484035 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATG
77484100 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGC
77484115 CCGGATATAT
1 CCGGATATAT
77484125 TTCCAATGTT
Statistics
Matches: 154, Mismatches: 11, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
77 1 0.01
78 31 0.20
79 73 0.47
80 49 0.32
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATG
CCTTCGGGTCTTAGC
Found at i:77484053 original size:40 final size:40
Alignment explanation
Indices: 77483877--77484124 Score: 367
Period size: 40 Copynumber: 6.2 Consensus size: 40
77483867 CGGGATTTAA
* * * * *
77483877 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77483917 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77483957 CC-GATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77483996 CC-GATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77484035 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77484075 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77484115 CCGGATATAT
1 CCGGATATAT
77484125 TTCCAATGTT
Statistics
Matches: 190, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 70 0.37
40 119 0.63
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77488039 original size:1 final size:1
Alignment explanation
Indices: 77488033--77488058 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
77488023 AAGGGCATCT
77488033 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
77488059 GGAGGAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:77489125 original size:71 final size:71
Alignment explanation
Indices: 77489004--77489137 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
77488994 GTTTTCCAAG
* * *
77489004 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
77489069 GTTTCA
66 GTTTCA
* * *
77489075 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
77489138 TTGCTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:77489285 original size:71 final size:71
Alignment explanation
Indices: 77489164--77489297 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
77489154 GTTTTCCAAG
* * *
77489164 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
77489229 GTTTCA
66 GTTTCA
* * *
77489235 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
77489298 CTGCCTTTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:77489406 original size:161 final size:160
Alignment explanation
Indices: 77488913--77489781 Score: 1578
Period size: 160 Copynumber: 5.4 Consensus size: 160
77488903 TTGTTTTTTC
*
77488913 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
77488978 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
77489043 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
77489073 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
77489138 TTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
77489203 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
77489233 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
77489298 CTGCCTTTTTAATTCATGTTTTCCAAGAAAAACAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 CTG-CTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
77489363 AGACACGTTGAGGTAATTTCAATTTATGTTT
130 AGACACGTTGAGGTAATTTCAATTTATGTTT
*
77489394 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGTTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
77489459 CTGCCTTTTTAATTCATGTTTTCCAAGAAAAACAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 CTG-CTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
77489524 AGACACGTTGAGGTAATTTCAATTTATGTTT
130 AGACACGTTGAGGTAATTTCAATTTATGTTT
*
77489555 CAAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
77489620 TTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
*
77489685 GACACGTTAAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
* * * * *
77489715 CAAAAATCAACTCATATTGTGAGAAGTGAGTTGAACCT-TGCGGCACGCTAAGGTATTTTCAAAT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG-GGCACGCTGAGGTATTTTCAATT
77489779 TCT
65 TCT
77489782 ATTTTCAAAA
Statistics
Matches: 689, Mismatches: 18, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
159 1 0.00
160 372 0.54
161 316 0.46
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (160 bp):
CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTAATTTCAATTTATGTTT
Found at i:77489454 original size:71 final size:70
Alignment explanation
Indices: 77489325--77489458 Score: 196
Period size: 71 Copynumber: 1.9 Consensus size: 70
77489315 GTTTTCCAAG
* * *
77489325 AAAAACAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAAACAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
77489390 GTTTC
66 GTTTC
* * * *
77489395 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGTTATTTTCAATTT
1 AAAAA-CAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
77489459 CTGCCTTTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
70 5 0.09
71 51 0.91
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (70 bp):
AAAAACAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTC
Found at i:77489572 original size:71 final size:70
Alignment explanation
Indices: 77489486--77489619 Score: 196
Period size: 71 Copynumber: 1.9 Consensus size: 70
77489476 GTTTTCCAAG
* * * *
77489486 AAAAACAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAAACAACTCATATTGCGAGAAGTAAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
77489551 GTTTC
66 GTTTC
* * *
77489556 AAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAAA-CAACTCATATTGCGAGAAGTAAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
77489620 TTGCTTTTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
70 5 0.09
71 51 0.91
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29
Consensus pattern (70 bp):
AAAAACAACTCATATTGCGAGAAGTAAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTC
Found at i:77489767 original size:71 final size:72
Alignment explanation
Indices: 77489646--77489825 Score: 220
Period size: 71 Copynumber: 2.5 Consensus size: 72
77489636 GTTTTCCAAG
* * *
77489646 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTAAGGTAATTTC-AATT-T
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGACACGCTAAGGTAATTTCAAATTCT
77489709 ATGTTTCA
66 AT-TTTCA
* * * ** * *
77489717 AAAATCAACTCATATTGTGAGAAGTGAGTTGAACCTTGCGGCACGCTAAGGTATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGACACGCTAAGGTAATTTCAAATTCT
77489782 ATTTTCA
66 ATTTTCA
* * *
77489789 AAAGTTAATTCATATTGCGAGAGGTGAGTTGAGCCTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
77489826 TAATTTTCGT
Statistics
Matches: 91, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
71 48 0.53
72 40 0.44
73 3 0.03
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (72 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGACACGCTAAGGTAATTTCAAATTCT
ATTTTCA
Found at i:77489877 original size:68 final size:67
Alignment explanation
Indices: 77489770--77489900 Score: 187
Period size: 68 Copynumber: 1.9 Consensus size: 67
77489760 CGCTAAGGTA
* *
77489770 TTTTCAAATTCTATTTTCAAAAGTTAATTCATATTGCGAGAGGTGAGTTGAGCC-TTTAATTTTC
1 TTTTCAAATTCTATTTTCAAAAGTTAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTTC
77489834 GT
66 GT
77489836 TTTTCGAAA-TCTACTTTTCAAATTA-TTAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAAT
1 TTTTC-AAATTCTA-TTTTCAAA--AGTTAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAAT
77489899 TT
62 TT
77489901 CTACGTCTCA
Statistics
Matches: 58, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
66 9 0.16
67 11 0.19
68 29 0.50
69 9 0.16
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (67 bp):
TTTTCAAATTCTATTTTCAAAAGTTAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTTC
GT
Found at i:77491122 original size:14 final size:14
Alignment explanation
Indices: 77491103--77491130 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77491093 GCCCTCTCTC
77491103 CTCCCCTCTCCTTT
1 CTCCCCTCTCCTTT
77491117 CTCCCCTCTCCTTT
1 CTCCCCTCTCCTTT
77491131 TCTCTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (14 bp):
CTCCCCTCTCCTTT
Found at i:77491642 original size:26 final size:25
Alignment explanation
Indices: 77491596--77491644 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
77491586 AATGTATTGT
77491596 ATTTATTATTATTATAGATCTTATC
1 ATTTATTATTATTATAGATCTTATC
*
77491621 ATTTA-TATATATATATATATCTTA
1 ATTTATTAT-TAT-TATAGATCTTA
77491645 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 8 0.38
26 10 0.48
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (25 bp):
ATTTATTATTATTATAGATCTTATC
Found at i:77491878 original size:11 final size:11
Alignment explanation
Indices: 77491824--77491883 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
77491814 ATGTTTAATA
77491824 TTATATAT-TT
1 TTATATATATT
*
77491834 TTCATATATGTT
1 TT-ATATATATT
* *
77491846 ATATATAAGTCTT
1 TTATAT-A-TATT
77491859 TTAATATATATT
1 TT-ATATATATT
77491871 TTATATATATT
1 TTATATATATT
77491882 TT
1 TT
77491884 TAATGTTACT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 2 0.05
11 21 0.51
12 9 0.22
13 5 0.12
14 4 0.10
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (11 bp):
TTATATATATT
Found at i:77491940 original size:21 final size:23
Alignment explanation
Indices: 77491916--77491957 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
77491906 ATGTATACCT
77491916 CTAATA-TTATA-TTATATATTC
1 CTAATACTTATATTTATATATTC
*
77491937 CTAATACTTGTATTTATATAT
1 CTAATACTTATATTTATATAT
77491958 ATATGCATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 4 0.22
23 8 0.44
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (23 bp):
CTAATACTTATATTTATATATTC
Found at i:77494079 original size:20 final size:20
Alignment explanation
Indices: 77494054--77494124 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
77494044 TGCCTAGTTA
77494054 TGCACTTTGGTGCCTCTGTT
1 TGCACTTTGGTGCCTCTGTT
* *
77494074 TTCACTTTGGTGCCTCTGTA
1 TGCACTTTGGTGCCTCTGTT
* * *
77494094 TGCACTTCGGTGTCTATGTT
1 TGCACTTTGGTGCCTCTGTT
*
77494114 TGCACATTGGT
1 TGCACTTTGGT
77494125 ATCTTTGATT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.10, C:0.23, G:0.24, T:0.44
Consensus pattern (20 bp):
TGCACTTTGGTGCCTCTGTT
Found at i:77496786 original size:26 final size:25
Alignment explanation
Indices: 77496718--77496790 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 25
77496708 TTTTATCTCA
* * *
77496718 ATTTTACCCCCAGTAAAAGTTTGACT
1 ATTTTA-CCCCAGTAAAATTTTAACG
77496744 ATTTTA-CCCAGGATAAAATTTTAACG
1 ATTTTACCCCA-G-TAAAATTTTAACG
77496770 ATTTTACCCCTAGTAAAATTT
1 ATTTTACCCC-AGTAAAATTT
77496791 CGAGAAAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
24 4 0.10
25 1 0.03
26 30 0.75
27 4 0.10
28 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.37
Consensus pattern (25 bp):
ATTTTACCCCAGTAAAATTTTAACG
Found at i:77503820 original size:28 final size:29
Alignment explanation
Indices: 77503722--77503820 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
77503712 TCACAAATTG
* *
77503722 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
77503751 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
77503779 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
77503807 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77503821 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:77505355 original size:48 final size:48
Alignment explanation
Indices: 77505300--77505439 Score: 183
Period size: 48 Copynumber: 2.9 Consensus size: 48
77505290 TTAGGGGTTA
*
77505300 CATTGAGTTAGCTTCGGGCCATGATATTGGCACTCT-GGGTGCGAGATT
1 CATTGAGTTGGCTTCGGGCCATGATATTGGCACT-TAGGGTGCGAGATT
* * * * * *
77505348 CATTGAGTTGGCTTCAGGCCATGATATTTGAAATTCGGGTGTGAGATT
1 CATTGAGTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGATT
* *
77505396 CACTGAGTTGGCTTCGGGGCATGATATTGGCACTTAGGGTGCGA
1 CATTGAGTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGA
77505440 AACTTCCGAG
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 1 0.01
48 76 0.99
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.31
Consensus pattern (48 bp):
CATTGAGTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGATT
Found at i:77530619 original size:43 final size:43
Alignment explanation
Indices: 77530566--77530677 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 43
77530556 ACCGAGATGT
* *
77530566 GATTACATGTAAGACCATGTCTGGGACATTGACATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACAGTGACATCGAT-ATGC
* ** * * *
77530609 GATTTCATGTAAGACCCCGTTTGGGACAGTGGCATCGATATGT
1 GATTACATGTAAGACCATGTCTGGGACAGTGACATCGATATGC
* *
77530652 GATAACATGTAAGACCATATCTGGGA
1 GATTACATGTAAGACCATGTCTGGGA
77530678 TATGGCATTG
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 2 0.04
43 52 0.96
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACAGTGACATCGATATGC
Found at i:77536210 original size:43 final size:43
Alignment explanation
Indices: 77536162--77536313 Score: 277
Period size: 43 Copynumber: 3.5 Consensus size: 43
77536152 CCGGCATTAC
77536162 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
**
77536205 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGATACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
77536248 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
77536291 GCCTGCTAGGCACGAAGGCCCGA
1 GCCTGCTAGGCACGAAGGCCCGA
77536314 GTATAATACC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.30, C:0.34, G:0.26, T:0.10
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:77536359 original size:38 final size:38
Alignment explanation
Indices: 77536316--77536430 Score: 140
Period size: 38 Copynumber: 3.0 Consensus size: 38
77536306 AGGCCCGAGT
* * *
77536316 ATAATACCAGCACTAGGCCTGCGGGATTTATCCCGGAC
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAC
* *
77536354 ATAATACCAGCACGAAGCCTGTGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAC
** *
77536392 ATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
1 ATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGGA
77536431 TACACATCAA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
38 55 0.83
39 5 0.08
40 6 0.09
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAC
Found at i:77544157 original size:12 final size:12
Alignment explanation
Indices: 77544140--77544164 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
77544130 TGACATCTTG
77544140 TATGATATTCGA
1 TATGATATTCGA
77544152 TATGATATTCGA
1 TATGATATTCGA
77544164 T
1 T
77544165 GCATCTCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TATGATATTCGA
Found at i:77544478 original size:29 final size:29
Alignment explanation
Indices: 77544419--77544517 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
77544409 ACAGTAAGTC
*
77544419 CGCACACTTAGTACT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
77544447 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
77544476 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
77544504 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77544518 CAATCTCATT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 33 0.49
29 34 0.50
30 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:77547057 original size:78 final size:80
Alignment explanation
Indices: 77546962--77547112 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 80
77546952 GGTTATAGCG
* * * *
77546962 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
77547024 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** * *
77547040 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCTTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
77547105 AGCCCGGA
66 AGCCCGGA
77547113 CATCATTCGA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.55
79 14 0.23
80 11 0.18
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:77547112 original size:40 final size:39
Alignment explanation
Indices: 77546931--77547112 Score: 156
Period size: 40 Copynumber: 4.6 Consensus size: 39
77546921 GACTCGCTCA
* ** *
77546931 AATGCCTTCGGGA-TGAAGCCCGG-TTATAGCGACTCGCAC
1 AATGCCTTCGGGACT-TAGCCCGGATT-TAGTAACTTGCAC
* *
77546970 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCAC
* *
77547010 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCAC
* * * *
77547048 GAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCAC
* *
77547089 AAAGCTTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
77547113 CATCATTCGA
Statistics
Matches: 116, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
38 24 0.21
39 21 0.18
40 61 0.53
41 10 0.09
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCAC
Found at i:77548796 original size:17 final size:18
Alignment explanation
Indices: 77548759--77548796 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
77548749 CTTTTTTTTT
77548759 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
77548778 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
77548795 TT
1 TT
77548797 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:77555396 original size:29 final size:29
Alignment explanation
Indices: 77555335--77555434 Score: 161
Period size: 28 Copynumber: 3.5 Consensus size: 29
77555325 TACAGTAAGT
*
77555335 TCGCACACTTAGTACT-TA-ATATTCAAAC
1 TCGCACACTTAGTGCTATACA-ATTCAAAC
77555363 TCGCACACTTAGTGCTATACAATTCAAAC
1 TCGCACACTTAGTGCTATACAATTCAAAC
77555392 TCGCACACTTAGTGCTATACAATT-AAAC
1 TCGCACACTTAGTGCTATACAATTCAAAC
77555420 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
77555435 CAATCTCATT
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (29 bp):
TCGCACACTTAGTGCTATACAATTCAAAC
Found at i:77564477 original size:16 final size:15
Alignment explanation
Indices: 77564445--77564483 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
77564435 TGATAATAAC
77564445 TAATATATAATTATAT
1 TAAT-TATAATTATAT
*
77564461 TTATTATAATGTATAT
1 TAATTATAAT-TATAT
77564477 TAATTAT
1 TAATTAT
77564484 TATCAACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TAATTATAATTATAT
Found at i:77570074 original size:40 final size:39
Alignment explanation
Indices: 77570030--77570177 Score: 163
Period size: 40 Copynumber: 3.7 Consensus size: 39
77570020 ATAACCACAA
* * *** *
77570030 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTC
77570070 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
77570110 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
77570150 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCA-CAATGCCTTCGGGTCTTAGCCCGG
77570178 GTATCATTCA
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
40 92 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:77578436 original size:48 final size:46
Alignment explanation
Indices: 77578383--77578570 Score: 140
Period size: 43 Copynumber: 4.2 Consensus size: 46
77578373 CATATAGTAA
* *
77578383 GATGCCAATGCCATATCCCAGATATGGTCTTATATGGGATCACATATC
1 GATGCCAATG--ATATCCCAAATATGGTCTTACATGGGATCACATATC
* ** * *
77578431 GATGCC-A--ATAGCCCAGCTATGGTCTTACATGATG-TCTCATATC
1 GATGCCAATGATATCCCAAATATGGTCTTACATG-GGATCACATATC
* * **** *
77578474 GATGCC-ATG---TCTCAAACATGGTCTTACACAAAATCACATATT
1 GATGCCAATGATATCCCAAATATGGTCTTACATGGGATCACATATC
77578516 GATGCCAATGCCATATCCCAAATATGGTCTTACATGGGATCACATATC
1 GATGCCAATG--ATATCCCAAATATGGTCTTACATGGGATCACATATC
*
77578564 GAGGCCA
1 GATGCCA
77578571 TACTCAGATA
Statistics
Matches: 106, Mismatches: 24, Indels: 20
0.71 0.16 0.13
Matches are distributed among these distances:
42 27 0.25
43 39 0.37
44 1 0.01
47 1 0.01
48 38 0.36
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (46 bp):
GATGCCAATGATATCCCAAATATGGTCTTACATGGGATCACATATC
Found at i:77578452 original size:43 final size:43
Alignment explanation
Indices: 77578390--77578588 Score: 124
Period size: 42 Copynumber: 4.6 Consensus size: 43
77578380 TAAGATGCCA
* *
77578390 ATGCC-ATATCCCAGATATGGTCTTATATG-GGATCACATATCG
1 ATGCCAATAGCCCAGATATGGTCTTACATGAGG-TCACATATCG
* * *
77578432 ATGCCAATAGCCCAGCTATGGTCTTACATGATGTCTCATATCG
1 ATGCCAATAGCCCAGATATGGTCTTACATGAGGTCACATATCG
* * * ** ** *
77578475 ATGCC-AT-GTCTCAAACATGGTCTTACACAAAATCACATATTG
1 ATGCCAATAG-CCCAGATATGGTCTTACATGAGGTCACATATCG
* *
77578517 ATGCCAATGCCATATCCCAAATATGGTCTTACATG-GGATCACATATCG
1 ATGCC-A----ATAGCCCAGATATGGTCTTACATGAGG-TCACATATCG
* *
77578565 AGGCC-ATA-CTCAGATATGGTCTTA
1 ATGCCAATAGCCCAGATATGGTCTTA
77578589 ACGAAACCAC
Statistics
Matches: 120, Mismatches: 26, Indels: 23
0.71 0.15 0.14
Matches are distributed among these distances:
41 15 0.12
42 38 0.32
43 35 0.29
44 1 0.01
48 31 0.26
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGCCAATAGCCCAGATATGGTCTTACATGAGGTCACATATCG
Found at i:77580654 original size:36 final size:35
Alignment explanation
Indices: 77580606--77580708 Score: 98
Period size: 36 Copynumber: 2.9 Consensus size: 35
77580596 CTGTTATAAG
* *
77580606 GGAGGTTCGCTAGATTGCTTACATGGCATGACCCAA
1 GGAGGTCCGCTAGATT-CTTACATGGCATGACCAAA
* * * *
77580642 TGAGGTCTGCTAGATTTTCTACATGGCATAACCAAA
1 GGAGGTCCGCTAGATTCT-TACATGGCATGACCAAA
* * *
77580678 GGAGGTCCACTAGATTACCTACATAGCATGA
1 GGAGGTCCGCTAGATT-CTTACATGGCATGA
77580709 TTTAGGGAGG
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
35 1 0.02
36 51 0.98
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (35 bp):
GGAGGTCCGCTAGATTCTTACATGGCATGACCAAA
Found at i:77582659 original size:40 final size:40
Alignment explanation
Indices: 77582615--77582690 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
77582605 ACTTTTTGCT
77582615 TATTAATTATAAACTTATTTAGTAACGAAGTCATTCTGCC
1 TATTAATTATAAACTTATTTAGTAACGAAGTCATTCTGCC
77582655 TATTAATTATAAACTTATTTAGTAACGAAGTCATTC
1 TATTAATTATAAACTTATTTAGTAACGAAGTCATTC
77582691 CACTATAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (40 bp):
TATTAATTATAAACTTATTTAGTAACGAAGTCATTCTGCC
Found at i:77587240 original size:13 final size:12
Alignment explanation
Indices: 77587198--77587240 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
77587188 AAACTCTTTT
*
77587198 TCTTTTTCATTC
1 TCTTTTTCAATC
*
77587210 TCTTTTTTAATC
1 TCTTTTTCAATC
77587222 TCTTTTTCAATC
1 TCTTTTTCAATC
*
77587234 TCATTTT
1 TCTTTTT
77587241 GTTTCCTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.14, C:0.21, G:0.00, T:0.65
Consensus pattern (12 bp):
TCTTTTTCAATC
Found at i:77587354 original size:13 final size:13
Alignment explanation
Indices: 77587338--77587390 Score: 52
Period size: 13 Copynumber: 3.7 Consensus size: 13
77587328 CTTGCCTCTC
77587338 TTTTCTTTTGATCTTT
1 TTTTCTTTT-ATC--T
77587354 TTTTGCTTTTCATCT
1 TTTT-CTTTT-ATCT
*
77587369 TTTTCTTTTATCG
1 TTTTCTTTTATCT
77587382 TTTTCTTTT
1 TTTTCTTTT
77587391 TACAAGAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
13 12 0.35
14 5 0.15
15 5 0.15
16 4 0.12
17 8 0.24
ACGTcount: A:0.06, C:0.15, G:0.06, T:0.74
Consensus pattern (13 bp):
TTTTCTTTTATCT
Found at i:77587368 original size:17 final size:16
Alignment explanation
Indices: 77587338--77587372 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
77587328 CTTGCCTCTC
*
77587338 TTTTCTTTTGATCTTT
1 TTTTCTTTTCATCTTT
77587354 TTTTGCTTTTCATCTTT
1 TTTT-CTTTTCATCTTT
77587371 TT
1 TT
77587373 CTTTTATCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.06, C:0.14, G:0.06, T:0.74
Consensus pattern (16 bp):
TTTTCTTTTCATCTTT
Found at i:77588240 original size:17 final size:17
Alignment explanation
Indices: 77588218--77588266 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
77588208 CACACAACTC
77588218 TTTTTTTTTAACTTAGA
1 TTTTTTTTTAACTTAGA
* *
77588235 TTTTTTTTTAAATTCGA
1 TTTTTTTTTAACTTAGA
*
77588252 CTTTTTTTTATACTT
1 TTTTTTTTTA-ACTT
77588267 CTCTTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 24 0.89
18 3 0.11
ACGTcount: A:0.20, C:0.08, G:0.04, T:0.67
Consensus pattern (17 bp):
TTTTTTTTTAACTTAGA
Found at i:77588256 original size:18 final size:18
Alignment explanation
Indices: 77588217--77588260 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
77588207 TCACACAACT
*
77588217 CTTTTTTTTTAACTTAGA
1 CTTTTTTTTTAAATTAGA
*
77588235 -TTTTTTTTTAAATTCGA
1 CTTTTTTTTTAAATTAGA
77588252 CTTTTTTTT
1 CTTTTTTTT
77588261 ATACTTCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.18, C:0.09, G:0.05, T:0.68
Consensus pattern (18 bp):
CTTTTTTTTTAAATTAGA
Found at i:77588274 original size:18 final size:17
Alignment explanation
Indices: 77588215--77588278 Score: 58
Period size: 17 Copynumber: 3.7 Consensus size: 17
77588205 TTTCACACAA
77588215 CTCTTTTTTTTTAACTT
1 CTCTTTTTTTTTAACTT
*** *
77588232 AGATTTTTTTTTAAATT
1 CTCTTTTTTTTTAACTT
*
77588249 CGAC-TTTTTTTTATACTT
1 C-TCTTTTTTTTTA-ACTT
77588267 CTCTTTTTTTTT
1 CTCTTTTTTTTT
77588279 TCAATTACAA
Statistics
Matches: 35, Mismatches: 9, Indels: 5
0.71 0.18 0.10
Matches are distributed among these distances:
17 23 0.66
18 12 0.34
ACGTcount: A:0.16, C:0.12, G:0.03, T:0.69
Consensus pattern (17 bp):
CTCTTTTTTTTTAACTT
Found at i:77599175 original size:47 final size:45
Alignment explanation
Indices: 77599029--77599346 Score: 232
Period size: 47 Copynumber: 6.8 Consensus size: 45
77599019 ATTTCTTGTG
** * * *
77599029 TGCCAGTGTAAGACATGTCTGGGACATGCATTAGAC-ACATTATGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGA-GATGA
* *
77599074 GTGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCAC-AGAGACGA
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTAGAGATGA
*
77599122 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGA
1 -TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGA-GATGA
* * * *
77599169 TAGCCAGTGTAAGATATGTTTGGGACACGCATCGG-CTAAGAGTTG-
1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-AGAGATGA
* * * * *
77599214 TGCTAGTGTAAGACATGTCTGGGACATGCATCAGCGCGTATATACGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATC-G-GCCTAGAGATGA
* * * *
77599261 -GAACTAGTATAAGACCATGTCTGGGACATGGCATCAGCCTCGATGATGA
1 TG--CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTAGA-GATGA
*
77599310 TAGCCAATGTAAGACTATGTCTGGGACATGGCATCGG
1 T-GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGG
77599347 TAACTTATCC
Statistics
Matches: 218, Mismatches: 35, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
44 27 0.12
45 3 0.01
46 33 0.15
47 65 0.30
48 36 0.17
49 48 0.22
50 5 0.02
51 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGATGA
Found at i:77600001 original size:13 final size:13
Alignment explanation
Indices: 77599983--77600007 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77599973 TCCTTTTGTC
77599983 CACATGGGCATGA
1 CACATGGGCATGA
77599996 CACATGGGCATG
1 CACATGGGCATG
77600008 TGTCTAGGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.32, T:0.16
Consensus pattern (13 bp):
CACATGGGCATGA
Found at i:77606662 original size:49 final size:47
Alignment explanation
Indices: 77606485--77606664 Score: 200
Period size: 49 Copynumber: 3.7 Consensus size: 47
77606475 TTTTTTGTGT
* **
77606485 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGATAATGATA
* * * * * *
77606532 GCCAGTGTAACACGTGTCTGGGATATGCATCAGCACGT-ATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTTGATA-ATGATA
* *
77606580 GCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTTGATAATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGATAATGATA
77606629 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
77606665 AACTTATCCC
Statistics
Matches: 109, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
47 31 0.28
48 15 0.14
49 53 0.49
50 10 0.09
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGATAATGATA
Found at i:77614514 original size:32 final size:32
Alignment explanation
Indices: 77614462--77614595 Score: 144
Period size: 32 Copynumber: 4.1 Consensus size: 32
77614452 TACCCAAATG
* * *
77614462 GTACAACTTAAAAAGATTATGTACACTTTGTGT
1 GTAC-ACTTGAAAAGGTTAGGTACACTTTGTGT
*
77614495 GTACACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACACTTGAAAAGGTTAGGTACACTTTGTGT
*
77614527 GTACACTTGGAAAA-GTTAGGTATACTTTGTGT
1 GTACACTT-GAAAAGGTTAGGTACACTTTGTGT
* * ** *
77614559 ATACCATTTGAAAAGGAAAGGTATACTTTGTGT
1 GTA-CACTTGAAAAGGTTAGGTACACTTTGTGT
77614592 GTAC
1 GTAC
77614596 CACTCGGAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
32 58 0.65
33 31 0.35
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (32 bp):
GTACACTTGAAAAGGTTAGGTACACTTTGTGT
Found at i:77614541 original size:65 final size:67
Alignment explanation
Indices: 77614472--77614608 Score: 172
Period size: 65 Copynumber: 2.1 Consensus size: 67
77614462 GTACAACTTA
* * ** * *
77614472 AAAAGATTATGTACACTTTGTGTGTA-CACTTGAAAAGGTTATGTACACTTTGTGTGTA-CACTT
1 AAAAGATTAGGTACACTTTGTGTATACCACTTGAAAAGGAAAGGTACACTTTGTGTGTACCACTC
77614535 GG
66 GG
* * *
77614537 AAAAG-TTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTGTACCACTC
1 AAAAGATTAGGTACACTTTGTGTATACCACTTGAAAAGGAAAGGTACACTTTGTGTGTACCACTC
77614601 GG
66 GG
77614603 AAAAGA
1 AAAAGA
77614609 ATGTACTCCT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
64 17 0.28
65 32 0.53
66 11 0.18
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.34
Consensus pattern (67 bp):
AAAAGATTAGGTACACTTTGTGTATACCACTTGAAAAGGAAAGGTACACTTTGTGTGTACCACTC
GG
Found at i:77616532 original size:80 final size:80
Alignment explanation
Indices: 77616448--77616596 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
77616438 TATGGTAACC
* * * *
77616448 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
77616512 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
77616528 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
77616593 CCGG
66 CCGG
77616597 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:77616538 original size:40 final size:38
Alignment explanation
Indices: 77616489--77616596 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
77616479 ATCACGATTT
*
77616489 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
77616529 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
77616569 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
77616597 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:77624647 original size:80 final size:80
Alignment explanation
Indices: 77624563--77624711 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
77624553 TATGGTAACC
* * * *
77624563 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
77624627 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
77624643 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
77624708 CCGG
66 CCGG
77624712 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:77624653 original size:40 final size:38
Alignment explanation
Indices: 77624604--77624711 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
77624594 ATCACGATTT
*
77624604 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
77624644 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
77624684 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
77624712 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:77646722 original size:17 final size:18
Alignment explanation
Indices: 77646692--77646725 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
77646682 AAAAAATTAA
*
77646692 TTATGTTTATTTAATTTT
1 TTATGTTTAATTAATTTT
77646710 TTAT-TTTAATTAATTT
1 TTATGTTTAATTAATTT
77646726 ACTTTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
TTATGTTTAATTAATTTT
Found at i:77646934 original size:86 final size:82
Alignment explanation
Indices: 77646838--77647061 Score: 209
Period size: 83 Copynumber: 2.7 Consensus size: 82
77646828 ATAAGTTTAT
* ** * *
77646838 TATTAATTTATAATTTTATTATTTTTGAAG-GGACTAAATAGAATTTTTATTTTATTTTTAGGAG
1 TATTAATTTATAATTTT-TTATTTAT-AAGAGGACTAAATAGAA-AGTT-TTTCATTTTGA-GAG
**
77646902 GTTAAAATACAATTTTAATATA
61 ACTAAAATACAATTTTAATATA
* * * *
77646924 TATTAATTTATAATTTCTTTATTTATAAGAGGATTGACTTGAAAGTTTTTCATTTTGAGAGACTA
1 TATTAATTTATAATTT-TTTATTTATAAGAGGACTAAATAGAAAGTTTTTCATTTTGAGAGACTA
*
77646989 AAATACAATTTTACTATA
65 AAATACAATTTTAATATA
** ** * *
77647007 TATTAATTTATAATTTTTCTATTCGTAAGATAACTAAAT-TAAAGTTTATCATTTT
1 TATTAATTTATAATTTTT-TATTTATAAGAGGACTAAATAGAAAGTTTTTCATTTT
77647062 TGGGAGGCTA
Statistics
Matches: 114, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
82 16 0.14
83 51 0.45
84 9 0.08
85 5 0.04
86 32 0.28
87 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (82 bp):
TATTAATTTATAATTTTTTATTTATAAGAGGACTAAATAGAAAGTTTTTCATTTTGAGAGACTAA
AATACAATTTTAATATA
Found at i:77647063 original size:83 final size:83
Alignment explanation
Indices: 77646904--77647061 Score: 212
Period size: 83 Copynumber: 1.9 Consensus size: 83
77646894 TTTAGGAGGT
* * * * *
77646904 TAAAATACAATTTTAATATATATTAATTTATAATTTCTTTATTTATAAGAGGATTGACTTGAAAG
1 TAAAATACAATTTTAATATATATTAATTTATAATTTCTTTATTCATAAGAGAACTAAATTGAAAG
*
77646969 TTTTTCATTTTGAGAGAC
66 TTTATCATTTTGAGAGAC
* * *
77646987 TAAAATACAATTTTACTATATATTAATTTATAATTT-TTCTATTCGTAAGATAACTAAATT-AAA
1 TAAAATACAATTTTAATATATATTAATTTATAATTTCTT-TATTCATAAGAGAACTAAATTGAAA
77647050 GTTTATCATTTT
65 GTTTATCATTTT
77647062 TGGGAGGCTA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
82 16 0.25
83 49 0.75
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.47
Consensus pattern (83 bp):
TAAAATACAATTTTAATATATATTAATTTATAATTTCTTTATTCATAAGAGAACTAAATTGAAAG
TTTATCATTTTGAGAGAC
Found at i:77647116 original size:2 final size:2
Alignment explanation
Indices: 77647109--77647137 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
77647099 TCTACTTTTC
77647109 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77647138 CTTTTATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77647432 original size:26 final size:25
Alignment explanation
Indices: 77647402--77647451 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
77647392 ATGTCTCTAA
77647402 AATAGTAATAAAATTAACAATAAAAC
1 AATAGTAATAAAA-TAACAATAAAAC
* *
77647428 AATAGTTATACAATAACAATAAAA
1 AATAGTAATAAAATAACAATAAAA
77647452 TAGTAGCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.64, C:0.08, G:0.04, T:0.24
Consensus pattern (25 bp):
AATAGTAATAAAATAACAATAAAAC
Found at i:77647467 original size:25 final size:25
Alignment explanation
Indices: 77647402--77647467 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 25
77647392 ATGTCTCTAA
* *
77647402 AATAGTAATAAAATTAACAATAAAAC
1 AATAGCAATACAA-TAACAATAAAAC
** *
77647428 AATAGTTATACAATAACAATAAAAT
1 AATAGCAATACAATAACAATAAAAC
* *
77647453 AGTAGCAATATAATA
1 AATAGCAATACAATA
77647468 GTGAAAAAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
25 22 0.67
26 11 0.33
ACGTcount: A:0.61, C:0.08, G:0.06, T:0.26
Consensus pattern (25 bp):
AATAGCAATACAATAACAATAAAAC
Found at i:77649425 original size:27 final size:26
Alignment explanation
Indices: 77649377--77649432 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
77649367 GCAGCAACTA
*
77649377 ATTAAATTTGTCTCTAAGCTAGACAC
1 ATTAAATTTGTCTCTAAACTAGACAC
77649403 ATTAAATTGATGTC-CTAAACTAGACAC
1 ATTAAATT--TGTCTCTAAACTAGACAC
77649430 ATT
1 ATT
77649433 TAAGCTATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.30
27 15 0.56
28 4 0.15
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (26 bp):
ATTAAATTTGTCTCTAAACTAGACAC
Found at i:77652715 original size:13 final size:14
Alignment explanation
Indices: 77652691--77652722 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
77652681 TTCTTTTCAT
77652691 TCTTTTTATTTTTC
1 TCTTTTTATTTTTC
77652705 TCTTTTT-TTTTTC
1 TCTTTTTATTTTTC
77652718 TCTTT
1 TCTTT
77652723 CAATGGATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (14 bp):
TCTTTTTATTTTTC
Found at i:77654738 original size:11 final size:11
Alignment explanation
Indices: 77654722--77654763 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
77654712 TTCCAATCAC
**
77654722 TTTTTTTTTTA
1 TTTTTTTTGAA
77654733 TTTTTTTTGAA
1 TTTTTTTTGAA
77654744 TTTTTTTTCGAA
1 TTTTTTTT-GAA
77654756 TTTTTTTT
1 TTTTTTTT
77654764 TCAACTTCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
11 17 0.61
12 11 0.39
ACGTcount: A:0.12, C:0.02, G:0.05, T:0.81
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:77654765 original size:13 final size:12
Alignment explanation
Indices: 77654732--77654763 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
77654722 TTTTTTTTTT
77654732 ATTTTTTTT-GA
1 ATTTTTTTTCGA
77654743 ATTTTTTTTCGA
1 ATTTTTTTTCGA
77654755 ATTTTTTTT
1 ATTTTTTTT
77654764 TCAACTTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.16, C:0.03, G:0.06, T:0.75
Consensus pattern (12 bp):
ATTTTTTTTCGA
Found at i:77656140 original size:27 final size:26
Alignment explanation
Indices: 77656092--77656147 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
77656082 GCAGCAACTA
*
77656092 ATTAAATTTGTCTCTAAGCTAGACAC
1 ATTAAATTTGTCTCTAAACTAGACAC
77656118 ATTAAATTGATGTC-CTAAACTAGACAC
1 ATTAAATT--TGTCTCTAAACTAGACAC
77656145 ATT
1 ATT
77656148 TAAGCTATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.30
27 15 0.56
28 4 0.15
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (26 bp):
ATTAAATTTGTCTCTAAACTAGACAC
Done.