Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 249 of 433
Found at i:77656615 original size:16 final size:16
Alignment explanation
Indices: 77656594--77656656 Score: 81
Period size: 16 Copynumber: 3.9 Consensus size: 16
77656584 GTTTGGTTCA
* *
77656594 CTGTAATGGAATAGGG
1 CTGTAATAGAATAGAG
*
77656610 CTGTAATTGAATAGAG
1 CTGTAATAGAATAGAG
*
77656626 CTGTAATAAAATAGAG
1 CTGTAATAGAATAGAG
*
77656642 ATGTAATAGAATAGA
1 CTGTAATAGAATAGA
77656657 ACTATAATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.43, C:0.05, G:0.25, T:0.27
Consensus pattern (16 bp):
CTGTAATAGAATAGAG
Found at i:77656664 original size:16 final size:16
Alignment explanation
Indices: 77656593--77656664 Score: 65
Period size: 16 Copynumber: 4.5 Consensus size: 16
77656583 CGTTTGGTTC
* *
77656593 ACTGTAATGGAATAGG
1 ACTGTAATAGAATAGA
* *
77656609 GCTGTAATTGAATAGA
1 ACTGTAATAGAATAGA
* *
77656625 GCTGTAATAAAATAGA
1 ACTGTAATAGAATAGA
77656641 GA-TGTAATAGAATAGA
1 -ACTGTAATAGAATAGA
*
77656657 ACTATAAT
1 ACTGTAAT
77656665 CAGTAATTCA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
15 1 0.02
16 45 0.98
ACGTcount: A:0.44, C:0.06, G:0.22, T:0.28
Consensus pattern (16 bp):
ACTGTAATAGAATAGA
Found at i:77656869 original size:14 final size:14
Alignment explanation
Indices: 77656833--77656873 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
77656823 GTTATTAAAT
*
77656833 TTTAAT-AAAATTA
1 TTTAATAAAAATAA
*
77656846 -TTATTAAAAATAA
1 TTTAATAAAAATAA
77656859 TTTAATAAAAATAA
1 TTTAATAAAAATAA
77656873 T
1 T
77656874 AAATAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 4 0.17
13 6 0.26
14 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAATAAAAATAA
Found at i:77656904 original size:58 final size:57
Alignment explanation
Indices: 77656829--77656967 Score: 197
Period size: 58 Copynumber: 2.4 Consensus size: 57
77656819 TATTGTTATT
* *
77656829 AAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACC
1 AAATTTTAATATAATTATTATTAAAAATAATTTAAT-AAAATAATAAATAATTTAACA
* * * * *
77656887 ATATTTTAACATAATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATA
1 AAATTTTAATATAATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACA
77656944 AAATTCTTAATATAATTATTATTA
1 AAATT-TTAATATAATTATTATTA
77656968 TATGAATTAA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.31
58 49 0.69
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (57 bp):
AAATTTTAATATAATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACA
Found at i:77656988 original size:58 final size:56
Alignment explanation
Indices: 77656829--77657005 Score: 169
Period size: 58 Copynumber: 3.1 Consensus size: 56
77656819 TATTGTTATT
* * * * **
77656829 AAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACC
1 AAATTTTAACATAATTATTATT-AATATAATTTAA-AAAAATAATATATAATTTAATA
* *
77656887 ATATTTTAACATAATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATA
1 AAATTTTAACATAATTATTATT-AATATAATTTAAAAAAATAATATATAATTTAATA
* * **
77656944 AAATTCTTAATATAATTATTATT-ATATGAA-TTAAAAAATCATAATATAAAATACAATA
1 AAATT-TTAACATAATTATTATTAATAT-AATTTAAAAAA--ATAATATATAATTTAATA
77657002 AAAT
1 AAAT
77657006 AATATATAAT
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
56 11 0.11
57 24 0.24
58 66 0.65
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (56 bp):
AAATTTTAACATAATTATTATTAATATAATTTAAAAAAATAATATATAATTTAATA
Found at i:77659310 original size:72 final size:73
Alignment explanation
Indices: 77659223--77659364 Score: 207
Period size: 72 Copynumber: 2.0 Consensus size: 73
77659213 TACAAGTAAT
* *
77659223 TAACATTTACTAGCTATCAAAGTTGTAAAAAACCCAAAAAAAAT-CGAAAATTGCAATGAAAACA
1 TAACATTTACCAGCTATCAAAGTTGTAAAAAACCCAAAAAAAATGCGAAAA-TGCAAAGAAAACA
77659287 -GAGAAAAA
65 TGAGAAAAA
* ** *
77659295 TAACATTTACCAGCTATCGAAGTTGTAAAAAACCCAGGAAAAATGGGAAAATGCAAAGAAAACAT
1 TAACATTTACCAGCTATCAAAGTTGTAAAAAACCCAAAAAAAATGCGAAAATGCAAAGAAAACAT
77659360 GAGAA
66 GAGAA
77659365 TTTAAAGAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
72 52 0.84
73 10 0.16
ACGTcount: A:0.53, C:0.14, G:0.15, T:0.18
Consensus pattern (73 bp):
TAACATTTACCAGCTATCAAAGTTGTAAAAAACCCAAAAAAAATGCGAAAATGCAAAGAAAACAT
GAGAAAAA
Found at i:77661947 original size:18 final size:19
Alignment explanation
Indices: 77661913--77661952 Score: 64
Period size: 18 Copynumber: 2.1 Consensus size: 19
77661903 TTATTTATTT
77661913 ATTTAAAAATTATATTTAAA
1 ATTTAAAAA-TATATTTAAA
77661933 ATTTAAAAA-ATATTTAAA
1 ATTTAAAAATATATTTAAA
77661951 AT
1 AT
77661953 ATATATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 11 0.55
20 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTTAAAAATATATTTAAA
Found at i:77661947 original size:31 final size:32
Alignment explanation
Indices: 77661912--77661974 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 32
77661902 CTTATTTATT
77661912 TATTTAAAA-ATTATATTTAAAAT-TTAAAAAA
1 TATTTAAAATA-TATATTTAAAATATTAAAAAA
*
77661943 TATTTAAAATATATATTTAAAATATTATAAAA
1 TATTTAAAATATATATTTAAAATATTAAAAAA
77661975 CAAATAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 21 0.72
32 8 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (32 bp):
TATTTAAAATATATATTTAAAATATTAAAAAA
Found at i:77661960 original size:13 final size:13
Alignment explanation
Indices: 77661933--77661967 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
77661923 TATATTTAAA
77661933 ATTTAAAA-A-AT
1 ATTTAAAATATAT
77661944 ATTTAAAATATAT
1 ATTTAAAATATAT
77661957 ATTTAAAATAT
1 ATTTAAAATAT
77661968 TATAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 8 0.36
12 1 0.05
13 13 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
ATTTAAAATATAT
Found at i:77662043 original size:24 final size:24
Alignment explanation
Indices: 77662005--77662114 Score: 64
Period size: 23 Copynumber: 4.4 Consensus size: 24
77661995 TCATATCTTT
*
77662005 AAAAATAATATATTTTAAATAATTA
1 AAAAATAATATATTTAAAAT-ATTA
*
77662030 AAAAATCATA-ATTTAAAATATTA
1 AAAAATAATATATTTAAAATATTA
* * **
77662053 TAAAACAAT-T-TAAAAAATATTTA
1 AAAAATAATATATTTAAAATA-TTA
*
77662076 AAATTTAAAATATATATTTAAAATATTA
1 AAA---AATA-ATATATTTAAAATATTA
*
77662104 TAAAACTAATA
1 -AAAAATAATA
77662115 ATAAATTTGA
Statistics
Matches: 63, Mismatches: 13, Indels: 18
0.67 0.14 0.19
Matches are distributed among these distances:
22 7 0.11
23 15 0.24
24 8 0.13
25 12 0.19
26 5 0.08
27 2 0.03
28 4 0.06
29 10 0.16
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (24 bp):
AAAAATAATATATTTAAAATATTA
Found at i:77662056 original size:25 final size:25
Alignment explanation
Indices: 77662005--77662057 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
77661995 TCATATCTTT
*
77662005 AAAAATAATATATTTTAAATAATTA
1 AAAAATAATATATTTAAAATAATTA
*
77662030 AAAAATCATA-ATTTAAAAT-ATTA
1 AAAAATAATATATTTAAAATAATTA
*
77662053 TAAAA
1 AAAAA
77662058 CAATTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.32
24 8 0.32
25 9 0.36
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (25 bp):
AAAAATAATATATTTAAAATAATTA
Found at i:77662064 original size:20 final size:19
Alignment explanation
Indices: 77662039--77662088 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
77662029 AAAAAATCAT
77662039 AATTTAAAATATTATAAAA
1 AATTTAAAATATTATAAAA
* **
77662058 CAATTTAAAA-AATATTTAA
1 -AATTTAAAATATTATAAAA
77662077 AATTTAAAATAT
1 AATTTAAAATAT
77662089 ATATTTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 9 0.36
19 7 0.28
20 9 0.36
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTTAAAATATTATAAAA
Found at i:77662094 original size:20 final size:20
Alignment explanation
Indices: 77662039--77662099 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
77662029 AAAAAATCAT
**
77662039 AATTTAAAATAT-TATAAAA
1 AATTTAAAATATATATTTAA
77662058 CAATTTAAAA-A-ATATTTAA
1 -AATTTAAAATATATATTTAA
77662077 AATTTAAAATATATATTTAA
1 AATTTAAAATATATATTTAA
77662097 AAT
1 AAT
77662100 ATTATAAAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 9 0.25
19 7 0.19
20 20 0.56
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTTAAAATATATATTTAA
Found at i:77662220 original size:20 final size:20
Alignment explanation
Indices: 77662195--77662242 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
77662185 AAGATTTAAA
*
77662195 AAAATTA-AAAAATAATATTT
1 AAAATTAGAAAAATAAT-TTC
77662215 AAAATTTAGAAAAATAATTTC
1 AAAA-TTAGAAAAATAATTTC
77662236 AAAATTA
1 AAAATTA
77662243 TATATTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 7 0.28
21 9 0.36
22 9 0.36
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAATTAGAAAAATAATTTC
Found at i:77662227 original size:21 final size:21
Alignment explanation
Indices: 77662201--77662241 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
77662191 TAAAAAAATT
*
77662201 AAAAAATAATATTTAAAATTTA
1 AAAAAATAAT-TTCAAAATTTA
*
77662223 GAAAAATAATTTCAAAATT
1 AAAAAATAATTTCAAAATT
77662242 ATATATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (21 bp):
AAAAAATAATTTCAAAATTTA
Found at i:77662417 original size:14 final size:13
Alignment explanation
Indices: 77662406--77662466 Score: 53
Period size: 14 Copynumber: 5.0 Consensus size: 13
77662396 AATTTATTGT
77662406 TTTTTAAATATTA
1 TTTTTAAATATTA
77662419 TTTTT-AA-ATTA
1 TTTTTAAATATTA
77662430 TTTTTTAAA-A--A
1 -TTTTTAAATATTA
*
77662441 -TTTTAATTATTA
1 TTTTTAAATATTA
77662453 TTTTTTAAATATTA
1 -TTTTTAAATATTA
77662467 ACATATTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
9 6 0.15
10 1 0.03
11 5 0.13
12 8 0.21
13 8 0.21
14 11 0.28
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTTAAATATTA
Found at i:77662484 original size:21 final size:22
Alignment explanation
Indices: 77662426--77662485 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 22
77662416 TTATTTTTAA
* *
77662426 ATTATTTTTTAAAAATTTTAATT
1 ATTATTTTTT-AAAATATTAATC
77662449 ATTATTTTTT-AAATATTAA-C
1 ATTATTTTTTAAAATATTAATC
77662469 A-TATTTTTTAATAATAT
1 ATTATTTTTTAA-AATAT
77662486 AAAACATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 8 0.24
20 2 0.06
21 13 0.39
23 10 0.30
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTATTTTTTAAAATATTAATC
Found at i:77662589 original size:21 final size:21
Alignment explanation
Indices: 77662555--77662594 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
77662545 AAATTTTAAA
*
77662555 TTTTAAATATTTTTTAATTTG
1 TTTTAAATATTTTTAAATTTG
77662576 TTTTATAATA-TTTTAAATT
1 TTTTA-AATATTTTTAAATT
77662595 ATAATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (21 bp):
TTTTAAATATTTTTAAATTTG
Found at i:77662603 original size:14 final size:15
Alignment explanation
Indices: 77662578--77662610 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
77662568 TTAATTTGTT
77662578 TTATAATATTTTAAA
1 TTATAATATTTTAAA
77662593 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
77662607 TTAT
1 TTAT
77662611 TTAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:77662611 original size:24 final size:24
Alignment explanation
Indices: 77662576--77662631 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
77662566 TTTTAATTTG
*
77662576 TTTTATAATATTTTAAAT-TATAAT
1 TTTTA-AATATTTAAAATATATAAT
*
77662600 TTTTAAATTATTTAAAATATATTAT
1 TTTTAAA-TATTTAAAATATATAAT
77662625 TTTTAAA
1 TTTTAAA
77662632 GATATGGCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 14 0.50
25 12 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTTAAATATTTAAAATATATAAT
Found at i:77662696 original size:11 final size:13
Alignment explanation
Indices: 77662662--77662700 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
77662652 TTATTTATTT
77662662 TATACTATTTTAAA
1 TATA-TATTTTAAA
77662676 TATATATTTTAAA
1 TATATATTTTAAA
77662689 TAT-T-TTTTAAA
1 TATATATTTTAAA
77662700 T
1 T
77662701 TTTAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 8 0.32
12 1 0.04
13 12 0.48
14 4 0.16
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (13 bp):
TATATATTTTAAA
Found at i:77662717 original size:20 final size:20
Alignment explanation
Indices: 77662681--77662761 Score: 98
Period size: 20 Copynumber: 4.1 Consensus size: 20
77662671 TTAAATATAT
77662681 ATTTTAAATAT--TTTTTAA
1 ATTTTAAATATAATTTTTAA
77662699 ATTTTAAATATAATTTTTAA
1 ATTTTAAATATAATTTTTAA
*
77662719 A--TAAATATATAATATTTTTAA
1 ATTTTAA-ATAT-A-ATTTTTAA
77662740 ATTTTAAATATAATTTTTAA
1 ATTTTAAATATAATTTTTAA
77662760 AT
1 AT
77662762 AAATAAATAA
Statistics
Matches: 54, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
18 14 0.26
19 4 0.07
20 19 0.35
21 10 0.19
22 4 0.07
23 3 0.06
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTAAATATAATTTTTAA
Found at i:77662718 original size:13 final size:13
Alignment explanation
Indices: 77662700--77662762 Score: 56
Period size: 13 Copynumber: 4.7 Consensus size: 13
77662690 ATTTTTTAAA
77662700 TTTTAAATATAAT
1 TTTTAAATATAAT
77662713 TTTTAAATA-AAT
1 TTTTAAATATAAT
* * * *
77662725 ATATAATATTTTTAAA
1 TTTTAA-A--TATAAT
77662741 TTTTAAATATAAT
1 TTTTAAATATAAT
77662754 TTTTAAATA
1 TTTTAAATA
77662763 AATAAATAAG
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
12 7 0.18
13 23 0.61
15 2 0.05
16 6 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTTAAATATAAT
Found at i:77662768 original size:21 final size:21
Alignment explanation
Indices: 77662703--77662770 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
77662693 TTTTAAATTT
77662703 TAAATATAATTTTTAAATAAA
1 TAAATATAATTTTTAAATAAA
* **
77662724 TATATA-ATATTTTTAAAT-TT
1 TAAATATA-ATTTTTAAATAAA
77662744 TAAATATAATTTTTAAATAAA
1 TAAATATAATTTTTAAATAAA
77662765 TAAATA
1 TAAATA
77662771 AGGAAAAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 16 0.42
21 22 0.58
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TAAATATAATTTTTAAATAAA
Found at i:77663472 original size:29 final size:29
Alignment explanation
Indices: 77663440--77663500 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
77663430 TATATTTTTT
77663440 GTTCAATATAATATTTATATTTATTAAAA
1 GTTCAATATAATATTTATATTTATTAAAA
*
77663469 GTTCAATATAATATTTGTATTTATTAAAA
1 GTTCAATATAATATTTATATTTATTAAAA
77663498 GTT
1 GTT
77663501 ACACATTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (29 bp):
GTTCAATATAATATTTATATTTATTAAAA
Found at i:77669598 original size:15 final size:15
Alignment explanation
Indices: 77669578--77669608 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
77669568 AAATTTCTAA
77669578 TAAATATTCAAGAAG
1 TAAATATTCAAGAAG
77669593 TAAATATTCAAGAAG
1 TAAATATTCAAGAAG
77669608 T
1 T
77669609 TCAAGGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29
Consensus pattern (15 bp):
TAAATATTCAAGAAG
Found at i:77673580 original size:42 final size:41
Alignment explanation
Indices: 77673534--77673714 Score: 163
Period size: 43 Copynumber: 4.3 Consensus size: 41
77673524 TCTAGACAAA
* * *
77673534 GTCTTACACGAAA-TCAGATACGATGCCGATGTCCCAGATATG
1 GTCTTACACGAAATTCA-AT-CGAGGCCGATGTCCCAGACACG
* * *
77673576 GTCTTATACGTAAATTTCAATCGAGGTCTG-TATCCCAGACACG
1 GTCTTACACG-AAA-TTCAATCGAGG-CCGATGTCCCAGACACG
* *
77673619 GTCTTACACGAAA-TCAGATACGATGCCGATGTCCCAGACATG
1 GTCTTACACGAAATTCA-AT-CGAGGCCGATGTCCCAGACACG
*
77673661 GTCTTATACGTAAATCTCAATCGAGGCC-AGTGTCCCAGACACG
1 GTCTTACACG-AAAT-TCAATCGAGGCCGA-TGTCCCAGACACG
77673704 GTCTTACACGA
1 GTCTTACACGA
77673715 TGTCTCAGAC
Statistics
Matches: 113, Mismatches: 15, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
40 3 0.03
41 4 0.04
42 38 0.34
43 56 0.50
44 6 0.05
45 6 0.05
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (41 bp):
GTCTTACACGAAATTCAATCGAGGCCGATGTCCCAGACACG
Found at i:77673616 original size:85 final size:85
Alignment explanation
Indices: 77673534--77673714 Score: 317
Period size: 85 Copynumber: 2.1 Consensus size: 85
77673524 TCTAGACAAA
* *
77673534 GTCTTACACGAAATCAGATACGATGCCGATGTCCCAGATATGGTCTTATACGTAAATTTCAATCG
1 GTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAATCG
* *
77673599 AGGTCTGTATCCCAGACACG
66 AGGCCAGTATCCCAGACACG
77673619 GTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAATCG
1 GTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAATCG
*
77673684 AGGCCAGTGTCCCAGACACG
66 AGGCCAGTATCCCAGACACG
77673704 GTCTTACACGA
1 GTCTTACACGA
77673715 TGTCTCAGAC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (85 bp):
GTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAATCG
AGGCCAGTATCCCAGACACG
Found at i:77688817 original size:79 final size:82
Alignment explanation
Indices: 77688677--77688861 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 82
77688667 TCGAATGATG
* * *
77688677 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCAGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCAGACTAAGATCCGAAGGCATT
77688741 CGTGCGAGAT-AATA-AA
66 CGTGCGAG-TCAATATAA
* * **
77688757 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCAGACTAAGAT-CCGAAGGCAT
*
77688819 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
77688837 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77688862 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 2 0.02
79 54 0.60
80 34 0.38
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCAGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:77688818 original size:40 final size:40
Alignment explanation
Indices: 77688677--77688861 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
77688667 TCGAATGATG
* *
77688677 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * * * *
77688717 TCCAGACTAGGAT-CCGAAGGCATTCGTGCGAGATAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
77688757 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
77688796 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
77688837 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77688862 AGCGAGTCGT
Statistics
Matches: 115, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
39 32 0.28
40 74 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:77688892 original size:79 final size:79
Alignment explanation
Indices: 77688729--77688894 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
77688719 CAGACTAGGA
* *
77688729 TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
77688794 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * *
77688808 CCCGAAGGCATTCGTGCGAG-TCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCG
1 TCCGAAGGCATTCGTGCGAGAT-AATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCA
* * *
77688871 TTATATCC-GGTTAAAT
63 CTAAACCCGGGTTAAAT
77688887 TCCGAAGG
1 TCCGAAGG
77688895 TACGTGATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 44 0.62
80 26 0.37
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:77692856 original size:40 final size:39
Alignment explanation
Indices: 77692691--77692874 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
77692681 AAATTGAATG
* * *
77692691 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
77692731 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
77692771 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
77692811 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
77692850 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
77692875 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:77692899 original size:80 final size:81
Alignment explanation
Indices: 77692731--77692919 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
77692721 GCTGGAAATT
* * * *
77692731 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
77692796 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
77692812 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
77692875 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
77692891 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
77692920 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:77697769 original size:46 final size:46
Alignment explanation
Indices: 77697680--77697853 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
77697670 GGGGTCAAGT
* *
77697680 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA-
1 GTCGATGCCATGTCCCAGACAT-GTCTTACACTGGCAACGTCTCG-AG
77697726 GTCGATG-CATGTCCCAGACATGTCTTACACTGGCTAACGTCTCGAG
1 GTCGATGCCATGTCCCAGACATGTCTTACACTGGC-AACGTCTCGAG
* * * * * * * * *
77697772 GCCGAAG-TATGTCCTATACATGTCTTACACTAGCACTCGTCTCAAT
1 GTCGATGCCATGTCCCAGACATGTCTTACACTGGCA-ACGTCTCGAG
77697818 GTCGATGCCATGTCCCAGACATGATCTTACACTGGC
1 GTCGATGCCATGTCCCAGACATG-TCTTACACTGGC
77697854 TCTCATAATG
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
44 12 0.11
45 16 0.15
46 54 0.51
47 12 0.11
48 11 0.10
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GTCGATGCCATGTCCCAGACATGTCTTACACTGGCAACGTCTCGAG
Found at i:77697869 original size:94 final size:92
Alignment explanation
Indices: 77697726--77697899 Score: 226
Period size: 94 Copynumber: 1.9 Consensus size: 92
77697716 ACATCTCGTA
* * * *
77697726 GTCGATGCATGTCCCAGACATGTCTTACACTGGCTAACGTCTCGAGGCCGAAGTATGT-CCTATA
1 GTCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATATCGAGGCCGAAGCATGTCCCGA-A
77697790 CATGTCTTACACTAGCACTCGTCTCAAT
65 CATGTCTTACACTAGCACTCGTCTCAAT
** * *
77697818 GTCGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCG
1 GTCGATG-CATGTCCCAGACATG-TCTTACACTGGCTAACAT-ATCGAGGCCGAAGCATGTCCCG
77697882 AACATGTCTTACACTAGC
63 AACATGTCTTACACTAGC
77697900 TCACACAAGT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 7 0.10
93 15 0.21
94 44 0.63
95 4 0.06
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATATCGAGGCCGAAGCATGTCCCGAAC
ATGTCTTACACTAGCACTCGTCTCAAT
Found at i:77700196 original size:20 final size:20
Alignment explanation
Indices: 77700171--77700211 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
77700161 TCAAAATGCT
*
77700171 AACAGAGACACCGAATTGCA
1 AACAGAGACACCGAAGTGCA
* *
77700191 AACAGAGGCACTGAAGTGCA
1 AACAGAGACACCGAAGTGCA
77700211 A
1 A
77700212 TCTCGTAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (20 bp):
AACAGAGACACCGAAGTGCA
Found at i:77700229 original size:27 final size:27
Alignment explanation
Indices: 77700191--77700245 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
77700181 CCGAATTGCA
*
77700191 AACAGAGGCACTGAAGTGCAATCTCGT
1 AACAGAGGCACTGAAGTGAAATCTCGT
77700218 AACAGAGGCACTGAAGTGAAATCTCGT
1 AACAGAGGCACTGAAGTGAAATCTCGT
77700245 A
1 A
77700246 CAAGTGCGCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.18
Consensus pattern (27 bp):
AACAGAGGCACTGAAGTGAAATCTCGT
Found at i:77701904 original size:29 final size:29
Alignment explanation
Indices: 77701880--77701973 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
77701870 TCGCACACCC
* *
77701880 AGTGCCGTATTTTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
77701909 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
77701938 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
77701967 AGTGCCA
1 AGTGCCA
77701974 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.31
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:77701905 original size:58 final size:58
Alignment explanation
Indices: 77701843--77701973 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 58
77701833 ATTTAAGCCC
* * * * *
77701843 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
77701901 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
77701959 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
77701974 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 62 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:77709856 original size:59 final size:58
Alignment explanation
Indices: 77709783--77709914 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 58
77709773 ATTTAAGCCC
* * * * *
77709783 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCAT
* * **
77709842 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
77709900 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
77709915 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
58 26 0.41
59 36 0.57
60 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:77709872 original size:29 final size:29
Alignment explanation
Indices: 77709832--77709914 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
77709822 TGCCGTATTT
77709832 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
77709861 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
77709890 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
77709915 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:77711125 original size:21 final size:17
Alignment explanation
Indices: 77711087--77711138 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 17
77711077 GAATGAACAC
77711087 TTTTTTTTTTCTTTTCT
1 TTTTTTTTTTCTTTTCT
77711104 TTTTTTTTCTTCATATTCTCT
1 TTTTTTTT-TTC-T-TT-TCT
77711125 TTTTTTTTTT-TTTT
1 TTTTTTTTTTCTTTT
77711139 TTCATTTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
16 1 0.03
17 10 0.32
18 4 0.13
19 1 0.03
20 4 0.13
21 11 0.35
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTTTTTTCTTTTCT
Found at i:77711132 original size:26 final size:25
Alignment explanation
Indices: 77711096--77711155 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
77711086 CTTTTTTTTT
77711096 TCTTTTCTTTTTTTTTCTTCATATTC
1 TCTTTTCTTTTTTTTTCTTCAT-TTC
* *
77711122 TCTTTTTTTTTTTTTTTTTCATTTC
1 TCTTTTCTTTTTTTTTCTTCATTTC
77711147 T-TTATTCTT
1 TCTT-TTCTT
77711156 CCTACATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.07
25 8 0.27
26 20 0.67
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (25 bp):
TCTTTTCTTTTTTTTTCTTCATTTC
Found at i:77719580 original size:40 final size:40
Alignment explanation
Indices: 77719525--77719786 Score: 404
Period size: 40 Copynumber: 6.6 Consensus size: 40
77719515 TATTCGAATG
*
77719525 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
77719565 ATATCCGGGCTAAGTCCCGAAGGTTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
77719605 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
77719645 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
77719685 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
77719725 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACT
*
77719765 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
77719787 TACTTGGGTT
Statistics
Matches: 208, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
39 15 0.07
40 191 0.92
41 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:77723018 original size:5 final size:5
Alignment explanation
Indices: 77723008--77723049 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
77722998 GACACCAACC
*
77723008 ATAAA ATAAA ATAAA ATAAA ACAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
77723050 CTTACTTTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:77727444 original size:19 final size:19
Alignment explanation
Indices: 77727420--77727459 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
77727410 TGTGTCATCA
*
77727420 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
77727439 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
77727458 TA
1 TA
77727460 TACATTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:77737096 original size:16 final size:16
Alignment explanation
Indices: 77737084--77737131 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
77737074 TTCAAAAAGA
77737084 AAAATAAAAAAAAAAC
1 AAAATAAAAAAAAAAC
*** *
77737100 AAAATAAAATTGAAAT
1 AAAATAAAAAAAAAAC
77737116 AAAATAAAAATAAAAA
1 AAAATAAAAA-AAAAA
77737132 ATAGTAAAAT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
16 21 0.88
17 3 0.12
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (16 bp):
AAAATAAAAAAAAAAC
Found at i:77750108 original size:47 final size:47
Alignment explanation
Indices: 77750039--77750202 Score: 199
Period size: 47 Copynumber: 3.5 Consensus size: 47
77750029 CGCCCATAAG
77750039 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
* * * ** ***
77750086 CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTCGCAACCATAAGT
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
**
77750133 -GAACTTAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
77750179 CGAACTCGGACTCAACTCAACGAG
1 CGAACTCGGACTCAACTCAACGAG
77750203 TTCAGACATT
Statistics
Matches: 92, Mismatches: 20, Indels: 10
0.75 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 33 0.36
47 57 0.62
48 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.21
Consensus pattern (47 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:77750154 original size:46 final size:46
Alignment explanation
Indices: 77750087--77750289 Score: 153
Period size: 46 Copynumber: 4.6 Consensus size: 46
77750077 TACATCTCTC
*
77750087 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAACCATAAGT
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAACCATAAGT
* * * * ** ***
77750133 GAACTTAGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
1 GAACTCAGACTCAACTCAACGAGTTCGGA--CATTCGCAACCATAAGT
* * * *
77750179 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCACATCCATAAGT
1 -GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAACCATAAGT
*
77750226 GAACTC-G----------ACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAACCATAAGT
77750261 GAACTCAGACTCAACTCAACGAGTTCGGA
1 GAACTCAGACTCAACTCAACGAGTTCGGA
77750290 TGCCCAAATA
Statistics
Matches: 116, Mismatches: 25, Indels: 32
0.67 0.14 0.18
Matches are distributed among these distances:
35 32 0.28
36 1 0.01
45 2 0.02
46 48 0.41
47 32 0.28
48 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAACCATAAGT
Found at i:77750191 original size:93 final size:93
Alignment explanation
Indices: 77750032--77750231 Score: 346
Period size: 93 Copynumber: 2.2 Consensus size: 93
77750022 TGTAACCCGC
* *
77750032 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
* *
77750097 TCAACTCAACGAGTTCGGACATTCGCAA
66 TCAACTCAACGAGTTCAGACATTCACAA
*
77750125 CCATAAGTGAACTTAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
*
77750190 TCAACTCAACGAGTTCAGACATTCACAT
66 TCAACTCAACGAGTTCAGACATTCACAA
77750218 CCATAAGTGAACTC
1 CCATAAGTGAACTC
77750232 GACGAGTTCG
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 100 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.22
Consensus pattern (93 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
TCAACTCAACGAGTTCAGACATTCACAA
Found at i:77750238 original size:35 final size:35
Alignment explanation
Indices: 77750192--77750267 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
77750182 ACTCGGACTC
77750192 AACTCAACGAGTTCAGACATTCACATCCATAAGTG
1 AACTCAACGAGTTCAGACATTCACATCCATAAGTG
* * *
77750227 AACTCGACGAGTTCGGACATTCGCATCCATAAGTG
1 AACTCAACGAGTTCAGACATTCACATCCATAAGTG
77750262 AACTCA
1 AACTCA
77750268 GACTCAACTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (35 bp):
AACTCAACGAGTTCAGACATTCACATCCATAAGTG
Found at i:77766229 original size:93 final size:93
Alignment explanation
Indices: 77766112--77766282 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
77766102 GCCCATAAGT
* * *
77766112 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77766177 CAAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
77766205 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
77766270 CGAGTTCGGATGC
66 CAAGTTCGGATGC
77766283 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77766279 original size:46 final size:46
Alignment explanation
Indices: 77766104--77766279 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
77766094 TGTAACCCGC
* * *
77766104 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
77766150 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
77766200 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
77766243 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
77766280 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:77768892 original size:26 final size:26
Alignment explanation
Indices: 77768848--77769125 Score: 256
Period size: 26 Copynumber: 10.5 Consensus size: 26
77768838 GACAGATAAT
*
77768848 GAAAGCCTTTGTAGCGTAATATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
* * *
77768874 GGAAGCCATTGTGGTGTAATATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
* *
77768900 GAAAGCCTTTGTGGCATAGTATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
*
77768926 GAAAGCCTTTGTGGCGTAGTATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
* *
77768952 GAAAGCCTTTTTGGCTTAATAT-AGAA
1 GAAAGCCTTTGTGGCGTAATATGA-AA
* *
77768978 GAAAGCCATTGTGGCGTAGTATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
* * *
77769004 GAAAGACTTTGTTGCATAATATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
* * *
77769030 GCATAGCCTTTGCGGCGCAATATGAAA
1 G-AAAGCCTTTGTGGCGTAATATGAAA
* * * *
77769057 GAATAACCTTTTTGGCGTAAAATGAACT
1 GAA-AGCCTTTGTGGCGTAATATGAA-A
** *
77769085 GAAAAGCC-TTGTGG-AAAACCATGAAA
1 G-AAAGCCTTTGTGGCGTAA-TATGAAA
77769111 TGAAAGCCTTTGTGG
1 -GAAAGCCTTTGTGG
77769126 TAAATCATAA
Statistics
Matches: 202, Mismatches: 41, Indels: 17
0.78 0.16 0.07
Matches are distributed among these distances:
25 1 0.00
26 140 0.69
27 55 0.27
28 4 0.02
29 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (26 bp):
GAAAGCCTTTGTGGCGTAATATGAAA
Found at i:77769140 original size:27 final size:27
Alignment explanation
Indices: 77769078--77769152 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
77769068 TTGGCGTAAA
*
77769078 ATGAACTGAAAAGCC-TTGTGGAAAACC
1 ATGAAATG-AAAGCCTTTGTGGAAAACC
* *
77769105 ATGAAATGAAAGCCTTTGTGGTAAATC
1 ATGAAATGAAAGCCTTTGTGGAAAACC
*
77769132 AT-AAGATGAAAGCTTTTGTGG
1 ATGAA-ATGAAAGCCTTTGTGG
77769153 CGATCTTTGA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.19
27 34 0.81
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (27 bp):
ATGAAATGAAAGCCTTTGTGGAAAACC
Found at i:77769484 original size:26 final size:25
Alignment explanation
Indices: 77769453--77769658 Score: 178
Period size: 26 Copynumber: 7.9 Consensus size: 25
77769443 CAATAATGAA
* *
77769453 AAGCCTTTGTAGTGTAATATGAAATG
1 AAGCCTTTGTGGCGTAATATGAAA-G
77769479 AAGCCTTTGTGGCGTAATATGAAAG
1 AAGCCTTTGTGGCGTAATATGAAAG
* *
77769504 AAGGCCTTTGTGGCATAGTATGAAAG
1 AA-GCCTTTGTGGCGTAATATGAAAG
* * *
77769530 AAAACATTTGTGGCGTAATATGGAAG
1 -AAGCCTTTGTGGCGTAATATGAAAG
* * *
77769556 AAAGCCTTTGTGGCATAGTATGAAATA
1 -AAGCCTTTGTGGCGTAATATGAAA-G
*
77769583 AAGCCTTTGTGGCGTAATATAAAAG
1 AAGCCTTTGTGGCGTAATATGAAAG
** **
77769608 AAAGCAATTGTGGCACAATATGAAAG
1 -AAGCCTTTGTGGCGTAATATGAAAG
* * *
77769634 AATAGCCTTTATGGTGTAAAATGAA
1 -A-AGCCTTTGTGGCGTAATATGAA
77769659 TTGAAAGGCT
Statistics
Matches: 144, Mismatches: 31, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
25 3 0.02
26 124 0.86
27 17 0.12
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (25 bp):
AAGCCTTTGTGGCGTAATATGAAAG
Found at i:77769526 original size:52 final size:52
Alignment explanation
Indices: 77769452--77769701 Score: 241
Period size: 52 Copynumber: 4.8 Consensus size: 52
77769442 CCAATAATGA
* ** *
77769452 AAAGCCTTTGTAGTGTAATATGAAATG-AAGCCTTTGTGGCGTAATATGAAAG
1 AAAGCCTTTGTGGCATAGTATGAAA-GAAAGCCTTTGTGGCGTAATATGAAAG
* * * *
77769504 AAGGCCTTTGTGGCATAGTATGAAAGAAAACATTTGTGGCGTAATATGGAAG
1 AAAGCCTTTGTGGCATAGTATGAAAGAAAGCCTTTGTGGCGTAATATGAAAG
* *
77769556 AAAGCCTTTGTGGCATAGTATGAAATAAAGCCTTTGTGGCGTAATATAAAAG
1 AAAGCCTTTGTGGCATAGTATGAAAGAAAGCCTTTGTGGCGTAATATGAAAG
** * * * * * *
77769608 AAAGCAATTGTGGCACAATATGAAAGAATAGCCTTTATGGTGTAAAATGAATTG
1 AAAGCCTTTGTGGCATAGTATGAAAGAA-AGCCTTTGTGGCGTAATATGAA-AG
* * * ** *
77769662 AAAGGCTTTGTGGAAAACCATGAAAATAAAGCCTTTGTGG
1 AAAGCCTTTGTGGCATAGTATG-AAAGAAAGCCTTTGTGG
77769702 TAAATCACAA
Statistics
Matches: 161, Mismatches: 33, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
51 1 0.01
52 111 0.69
53 18 0.11
54 26 0.16
55 5 0.03
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (52 bp):
AAAGCCTTTGTGGCATAGTATGAAAGAAAGCCTTTGTGGCGTAATATGAAAG
Found at i:77769589 original size:78 final size:78
Alignment explanation
Indices: 77769466--77769643 Score: 223
Period size: 78 Copynumber: 2.3 Consensus size: 78
77769456 CCTTTGTAGT
* * * *
77769466 GTAATATGAAATG-AAGCCTTTGTGGCGTAATATGAAAGAAGGCCTTTGTGGCATAGTATGAAAG
1 GTAATATGAAA-GAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGCATAATATAAAAG
*
77769530 AAAACATTTGTGGC
65 AAAACAATTGTGGC
* * * *
77769544 GTAATATGGAAGAAAGCCTTTGTGGCATAGTATGAAATAAAGCCTTTGTGGCGTAATATAAAAGA
1 GTAATATGAAAGAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGCATAATATAAAAGA
*
77769609 AAGCAATTGTGGC
66 AAACAATTGTGGC
**
77769622 ACAATATGAAAGAATAGCCTTT
1 GTAATATGAAAGAA-AGCCTTT
77769644 ATGGTGTAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
77 1 0.01
78 77 0.91
79 7 0.08
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.28
Consensus pattern (78 bp):
GTAATATGAAAGAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGCATAATATAAAAGA
AAACAATTGTGGC
Found at i:77769982 original size:577 final size:577
Alignment explanation
Indices: 77768876--77769984 Score: 1589
Period size: 577 Copynumber: 1.9 Consensus size: 577
77768866 ATATGAAAGG
* *
77768876 AAGCCATTGTGGTGTAATATGAAAGAAAGCCTTTGTGGCATAGTATGAAAGAAAGCCTTTGTGGC
1 AAGCCATTGTAGTGTAATATGAAAGAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGC
* * * * * *
77768941 GTAGTATGAAAGAAAGCCTTTTTGGCTTAATATAGAAGAAAGCCATTGTGGCGTAGTATGAAAGA
66 ATAGTATGAAAGAAAACATTTGTGGCGTAATATAGAAGAAAGCCATTGTGGCATAGTATGAAAGA
* * * ** * *
77769006 AAGACTTTGTTGCATAATATGAAAGCATAGCCTTTGCGGCGCAATATGAAAGAATAACCTTTTTG
131 AAGACTTTGTGGCATAATATAAAAGCAAAGCAATTGCGGCACAATATGAAAGAATAACCTTTATG
*
77769071 GCGTAAAATGAACTGAAAAGCCTTGTGGAAAACCATGAAATGAAAGCCTTTGTGGTAAATCATAA
196 GCGTAAAATGAACTGAAAAGCCTTGTGGAAAACCATGAAATGAAAGCCTTTGTGGTAAATCACAA
* ** *
77769136 GATGAAAGCTTTTGTGGCGATCTTTGAAAGGAAATGCTCTTGGCGTGTAATTATAAGAATCTTAA
261 GATGAAAGCTTTTGTGGAGATCACTGAAAGGAAATGCTCTTAGCGTGTAATTATAAGAATCTTAA
* ** *
77769201 TGGCGTACTGTAAAAGATGTCCCTTGCATTAGATTCTAAATCAAATTGTTTCGTGTATTGTCAAA
326 TGGCGTACTGTAAAAGATATCCCTTGCAGCAGATTCTAAATCAAATTGTTTCGTGTATTATCAAA
* * * *
77769266 AGAGGCTGTCGGGAATTCAAACACGAATTTTGAAAGGAAAAGTCCATGGCCATGGCACTTTTTAA
391 AGAGGCTGTCGAGAATTCAAACACGAATTCTGAAAGGAAAAGTCCATGGCCATAGCACTCTTTAA
* * * *
77769331 AGGAACTTAAAGAAAGGTTATTACCCAAATAGGTTTTTTTGCGTGGCCCATGCAATGATGGGAAA
456 AGGAACTTAAAGAAAGGTTATTACCCAAAGAGGTTTTTTTGCATGGCACATGCAATGATGCGAAA
*
77769396 GCCTCACATAAGTGAGTTTAGGCAAATTAATATCACAAAAACTTGACCAATAATGAA
521 ACCTCACATAAGTGAGTTTAGGCAAATTAATATCACAAAAACTTGACCAATAATGAA
* * *
77769453 AAGCCTTTGTAGTGTAATATGAAATG-AAGCCTTTGTGGCGTAATATGAAAGAAGGCCTTTGTGG
1 AAGCCATTGTAGTGTAATATGAAA-GAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGG
* * *
77769517 CATAGTATGAAAGAAAACATTTGTGGCGTAATATGGAAGAAAGCCTTTGTGGCATAGTATGAAAT
65 CATAGTATGAAAGAAAACATTTGTGGCGTAATATAGAAGAAAGCCATTGTGGCATAGTATGAAAG
* * * *
77769582 AAAGCCTTTGTGGCGTAATATAAAAG-AAAGCAATTGTGGCACAATATGAAAGAATAGCCTTTAT
130 AAAGACTTTGTGGCATAATATAAAAGCAAAGCAATTGCGGCACAATATGAAAGAATAACCTTTAT
* * * *
77769646 GGTGTAAAATGAATTGAAAGGCTTTGTGGAAAACCATGAAAAT-AAAGCCTTTGTGGTAAATCAC
195 GGCGTAAAATGAACTGAAAAGCCTTGTGGAAAACCATG-AAATGAAAGCCTTTGTGGTAAATCAC
*
77769710 AAGATGAAAGCTTTTTGTGGAGATCACTGAAAGGAGATGCTCTTAGCGTGTAATTATAAGAATCT
259 AAGATGAAAGC-TTTTGTGGAGATCACTGAAAGGAAATGCTCTTAGCGTGTAATTATAAGAATCT
* ** * * *
77769775 TAATGGCGTACTGTAAAAGATATCCTTTGTGGCAGATTCTATATGAAATTGTTTGGTGTATTATC
323 TAATGGCGTACTGTAAAAGATATCCCTTGCAGCAGATTCTAAATCAAATTGTTTCGTGTATTATC
* * *
77769840 AAAAGAGGTCTGTTGAGACTTTAAACACGAATTCTGAAAGG-AAAGTCCATGGCCATAGCACTCT
388 AAAAGAGG-CTGTCGAGAATTCAAACACGAATTCTGAAAGGAAAAGTCCATGGCCATAGCACTCT
* * *
77769904 TTAAAGGAACTTAAAGGAA-GTTATTACCCAAAGGGGTTTTTTTTGCATGTCACATGCAATGATG
452 TTAAAGGAACTTAAAGAAAGGTTATTACCCAAAGAGG-TTTTTTTGCATGGCACATGCAATGATG
*
77769968 CGAAAACTTCACATAAG
516 CGAAAACCTCACATAAG
77769985 AATAGCCTTT
Statistics
Matches: 466, Mismatches: 61, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
576 111 0.24
577 327 0.70
578 28 0.06
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (577 bp):
AAGCCATTGTAGTGTAATATGAAAGAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGC
ATAGTATGAAAGAAAACATTTGTGGCGTAATATAGAAGAAAGCCATTGTGGCATAGTATGAAAGA
AAGACTTTGTGGCATAATATAAAAGCAAAGCAATTGCGGCACAATATGAAAGAATAACCTTTATG
GCGTAAAATGAACTGAAAAGCCTTGTGGAAAACCATGAAATGAAAGCCTTTGTGGTAAATCACAA
GATGAAAGCTTTTGTGGAGATCACTGAAAGGAAATGCTCTTAGCGTGTAATTATAAGAATCTTAA
TGGCGTACTGTAAAAGATATCCCTTGCAGCAGATTCTAAATCAAATTGTTTCGTGTATTATCAAA
AGAGGCTGTCGAGAATTCAAACACGAATTCTGAAAGGAAAAGTCCATGGCCATAGCACTCTTTAA
AGGAACTTAAAGAAAGGTTATTACCCAAAGAGGTTTTTTTGCATGGCACATGCAATGATGCGAAA
ACCTCACATAAGTGAGTTTAGGCAAATTAATATCACAAAAACTTGACCAATAATGAA
Found at i:77773107 original size:13 final size:14
Alignment explanation
Indices: 77773091--77773126 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
77773081 CAATCTCATA
77773091 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
77773104 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
77773117 TCTC-ATTTCA
1 TCTCAATTTCA
77773127 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:77773116 original size:18 final size:19
Alignment explanation
Indices: 77773078--77773118 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
77773068 TGGTTCATGT
77773078 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
77773097 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
77773115 TTTC
1 TTTC
77773119 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:77773750 original size:2 final size:2
Alignment explanation
Indices: 77773743--77773778 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
77773733 TACATAGATC
77773743 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77773779 ATTTCAATCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77774687 original size:19 final size:19
Alignment explanation
Indices: 77774663--77774746 Score: 87
Period size: 19 Copynumber: 4.1 Consensus size: 19
77774653 AATACTTATT
*
77774663 TATTATTTATACATGTGTA
1 TATTATTAATACATGTGTA
77774682 TATTATTAATACATGTGTA
1 TATTATTAATACATGTGTA
*
77774701 TCTATTTAAATATTTATACATGTGTA
1 --TA--T---TATTAATACATGTGTA
77774727 TATTATTAATACATGTGTA
1 TATTATTAATACATGTGTA
77774746 T
1 T
77774747 CTATTTAAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
19 34 0.62
21 2 0.04
22 1 0.02
23 1 0.02
24 2 0.04
26 15 0.27
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.50
Consensus pattern (19 bp):
TATTATTAATACATGTGTA
Found at i:77774716 original size:45 final size:45
Alignment explanation
Indices: 77774666--77774755 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
77774656 ACTTATTTAT
77774666 TATTTATACATGTGTATATTATTAATACATGTGTATCTATTTAAA
1 TATTTATACATGTGTATATTATTAATACATGTGTATCTATTTAAA
77774711 TATTTATACATGTGTATATTATTAATACATGTGTATCTATTTAAA
1 TATTTATACATGTGTATATTATTAATACATGTGTATCTATTTAAA
77774756 ACCATACATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.49
Consensus pattern (45 bp):
TATTTATACATGTGTATATTATTAATACATGTGTATCTATTTAAA
Found at i:77774735 original size:26 final size:26
Alignment explanation
Indices: 77774685--77774755 Score: 84
Period size: 19 Copynumber: 3.0 Consensus size: 26
77774675 ATGTGTATAT
77774685 TATTAATACATGTGTATCTATTTAAA
1 TATTAATACATGTGTATCTATTTAAA
*
77774711 TATTTATACATGTGTA--TA--T---
1 TATTAATACATGTGTATCTATTTAAA
77774730 TATTAATACATGTGTATCTATTTAAA
1 TATTAATACATGTGTATCTATTTAAA
77774756 ACCATACATT
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
19 15 0.42
21 2 0.06
22 1 0.03
23 1 0.03
24 2 0.06
26 15 0.42
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.48
Consensus pattern (26 bp):
TATTAATACATGTGTATCTATTTAAA
Found at i:77775056 original size:2 final size:2
Alignment explanation
Indices: 77775049--77775078 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
77775039 AACTTCATAA
77775049 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77775079 TTTGTATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77780562 original size:29 final size:28
Alignment explanation
Indices: 77780529--77780627 Score: 83
Period size: 29 Copynumber: 3.5 Consensus size: 28
77780519 TAAAACACCT
77780529 AAAGGATAGCCTTTGTGGAAAAACTCTAG
1 AAAGGATAGCCTTTGTGGAAAAACTCT-G
** * *
77780558 AAAGGCA-AGCCTTTGTGGTGAACCTCTT
1 AAAGG-ATAGCCTTTGTGGAAAAACTCTG
* * * *
77780586 AAAGGACAACATTTGTGGCAAAACTCTG
1 AAAGGATAGCCTTTGTGGAAAAACTCTG
*
77780614 AAAGGGTAAGCCTT
1 AAAGGAT-AGCCTT
77780628 CATGGCGAAC
Statistics
Matches: 53, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
27 1 0.02
28 25 0.47
29 26 0.49
30 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (28 bp):
AAAGGATAGCCTTTGTGGAAAAACTCTG
Found at i:77780612 original size:28 final size:28
Alignment explanation
Indices: 77780540--77780618 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
77780530 AAGGATAGCC
*
77780540 TTTGTGGAAAAACTCTAGAAAGGCAAGCC
1 TTTGTGGAAAAACTCT-GAAAGGCAAGCA
** * *
77780569 TTTGTGGTGAACCTCTTAAAGGACAA-CA
1 TTTGTGGAAAAACTCTGAAAGG-CAAGCA
*
77780597 TTTGTGGCAAAACTCTGAAAGG
1 TTTGTGGAAAAACTCTGAAAGG
77780619 GTAAGCCTTC
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
28 24 0.60
29 16 0.40
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (28 bp):
TTTGTGGAAAAACTCTGAAAGGCAAGCA
Found at i:77785022 original size:2 final size:2
Alignment explanation
Indices: 77785015--77785050 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
77785005 ATTGAAAGGG
* *
77785015 AT AT AT AT AG AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77785051 GTATTAAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:77791122 original size:29 final size:27
Alignment explanation
Indices: 77791089--77791227 Score: 106
Period size: 29 Copynumber: 5.0 Consensus size: 27
77791079 TAAATGACAA
77791089 CCTTTGTGGTAGAACTCTAGAAAGGCAAG
1 CCTTTGTGGTA-AACTCTAGAAAGG-AAG
*
77791118 CCTTTGTGGTGAACT-T-GTTAAAGGATAG
1 CCTTTGTGGTAAACTCTAG--AAAGGA-AG
* *
77791146 CCTTTGTGGCAAAACTCTAGAAGGGTAAG
1 CCTTTGTGG-TAAACTCTAGAAAGG-AAG
* * * *
77791175 CCTTCGTGGCAAACCTCT-TAAAGGATG
1 CCTTTGTGGTAAA-CTCTAGAAAGGAAG
77791202 CCTTTGTGGTAAGACTCTA-AAAGGAA
1 CCTTTGTGGTAA-ACTCTAGAAAGGAA
77791228 AGTCTTTATC
Statistics
Matches: 88, Mismatches: 12, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
26 1 0.01
27 24 0.27
28 28 0.32
29 32 0.36
30 2 0.02
31 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (27 bp):
CCTTTGTGGTAAACTCTAGAAAGGAAG
Found at i:77791152 original size:57 final size:55
Alignment explanation
Indices: 77791089--77791234 Score: 159
Period size: 57 Copynumber: 2.6 Consensus size: 55
77791079 TAAATGACAA
* ** * *
77791089 CCTTTGTGGTAGAACTCTAGAAAGGCAAGCCTTTGTGGTGAACTTGTTAAAGGATAG
1 CCTTTGTGGTA-AACTCTAGAAAGGAAAGCCTTTGTGGCAAACCTCTTAAAGGAT-G
* * * *
77791146 CCTTTGTGGCAAAACTCTAGAAGGGTAAGCCTTCGTGGCAAACCTCTTAAAGGATG
1 CCTTTGTGG-TAAACTCTAGAAAGGAAAGCCTTTGTGGCAAACCTCTTAAAGGATG
*
77791202 CCTTTGTGGTAAGACTCTA-AAAGGAAAGTCTTT
1 CCTTTGTGGTAA-ACTCTAGAAAGGAAAGCCTTT
77791235 ATCGCGAGTA
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
55 12 0.16
56 16 0.22
57 45 0.61
58 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (55 bp):
CCTTTGTGGTAAACTCTAGAAAGGAAAGCCTTTGTGGCAAACCTCTTAAAGGATG
Found at i:77795052 original size:28 final size:28
Alignment explanation
Indices: 77795012--77795065 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
77795002 TGGAAATTAA
77795012 CTTACCAATCATATTCATTTAAAGTAAG
1 CTTACCAATCATATTCATTTAAAGTAAG
77795040 CTTACCAATCATATTCATTTAAAGTA
1 CTTACCAATCATATTCATTTAAAGTA
77795066 GGCATACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.37
Consensus pattern (28 bp):
CTTACCAATCATATTCATTTAAAGTAAG
Found at i:77796446 original size:61 final size:61
Alignment explanation
Indices: 77796371--77796489 Score: 220
Period size: 61 Copynumber: 2.0 Consensus size: 61
77796361 GCACCAAAAT
*
77796371 CACTTAAATTTTGATAGACCACACAGTCGTGCCATGAGCCCATGTATGGCACATGGCCTAG
1 CACTTAAATTTTGATAGACCACACAGTCGTGCCATAAGCCCATGTATGGCACATGGCCTAG
*
77796432 CACTTAAATTTTGATAGACCACATAGTCGTGCCATAAGCCCATGTATGGCACATGGCC
1 CACTTAAATTTTGATAGACCACACAGTCGTGCCATAAGCCCATGTATGGCACATGGCC
77796490 GTGTGCTAGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (61 bp):
CACTTAAATTTTGATAGACCACACAGTCGTGCCATAAGCCCATGTATGGCACATGGCCTAG
Found at i:77797929 original size:22 final size:22
Alignment explanation
Indices: 77797901--77797944 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
77797891 TCTCATTAGT
*
77797901 ATAACTGAAGCAATTTGGCACC
1 ATAACTGAAGCAAATTGGCACC
77797923 ATAACTGAAGCAAATTGGCACC
1 ATAACTGAAGCAAATTGGCACC
77797945 CAGTGCCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (22 bp):
ATAACTGAAGCAAATTGGCACC
Found at i:77800664 original size:26 final size:26
Alignment explanation
Indices: 77800633--77800849 Score: 278
Period size: 26 Copynumber: 8.3 Consensus size: 26
77800623 TAGATAAGGA
*
77800633 AAAGCCTTTGTGGCATAATATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
*
77800659 AAAGCCTTTGTGGCGTAGTATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
* *
77800685 AAAGCCTTTGTGGCGTAGTATGAAAT
1 AAAGCCTTTGTGGCGTAATATGAAAG
* *
77800711 AAAGCCTTTGTGGTGTAGTATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
77800737 AAAGCCTTTGTGGCGTAATATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
* *
77800763 AAA-CCTTTGTGGTGAAATATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
*
77800788 AATAGCCTTTGTGGCGTAAAAT-AAATTG
1 AA-AGCCTTTGTGGCGTAATATGAAA--G
*
77800816 AAAGCCTTTGTGGCG-AACCATGAAAAG
1 AAAGCCTTTGTGGCGTAA-TATG-AAAG
77800843 AAAGCCT
1 AAAGCCT
77800850 CTATGGTAAA
Statistics
Matches: 171, Mismatches: 13, Indels: 13
0.87 0.07 0.07
Matches are distributed among these distances:
25 22 0.13
26 106 0.62
27 37 0.22
28 3 0.02
29 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (26 bp):
AAAGCCTTTGTGGCGTAATATGAAAG
Found at i:77802479 original size:86 final size:85
Alignment explanation
Indices: 77802372--77802547 Score: 316
Period size: 86 Copynumber: 2.1 Consensus size: 85
77802362 CTTTTATTCC
*
77802372 TTTTATTTATCATCTTTTAGCTTAGTTCTCTTGTCTTTTTCTCTAAAGTTCTTTCGGGTTTTGTG
1 TTTTATTTATCATCTTTTAGCTTAGTTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTG
77802437 TTTTCCTGGTTTTCTTTAGTG
66 TTTT-CTGGTTTTCTTTAGTG
*
77802458 TTTTGTTTATCATCTTTTAGCTTAGTTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTG
1 TTTTATTTATCATCTTTTAGCTTAGTTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTG
*
77802523 TTTTTTGGTTTTCTTTAGTG
66 TTTTCTGGTTTTCTTTAGTG
77802543 TTTTA
1 TTTTA
77802548 GGTAGGTAGT
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
85 19 0.22
86 67 0.78
ACGTcount: A:0.10, C:0.14, G:0.15, T:0.60
Consensus pattern (85 bp):
TTTTATTTATCATCTTTTAGCTTAGTTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTG
TTTTCTGGTTTTCTTTAGTG
Found at i:77805109 original size:29 final size:29
Alignment explanation
Indices: 77805043--77805129 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
77805033 AATTTCACAT
* * *
77805043 ACCTGTATTTGGCCCACTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
**
77805071 ATAT-TCATATGGCCCATTAGGCCCAAATC
1 ACCTGT-ATATGGCCCATTAGGCCCAAATC
77805100 ACCTGTATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
77805129 A
1 A
77805130 TATTTATATT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
27 1 0.02
28 17 0.35
29 30 0.61
30 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAGGCCCAAATC
Found at i:77805137 original size:29 final size:29
Alignment explanation
Indices: 77805052--77805138 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 29
77805042 TACCTGTATT
* * *
77805052 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
** *
77805080 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
77805109 TGGCCCATTAGGCCCAAATCATATTTATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
77805138 T
1 T
77805139 TCATTCTCAC
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 13 0.27
29 36 0.73
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCATATTTATA
Found at i:77805217 original size:17 final size:18
Alignment explanation
Indices: 77805195--77805230 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
77805185 TTACCTATTA
77805195 TGGGCCCA-ATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
77805212 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
77805230 T
1 T
77805231 CCGACCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.25
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:77805366 original size:8 final size:8
Alignment explanation
Indices: 77805347--77805390 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
77805337 CATAGCCAAA
77805347 CTTTT-GG
1 CTTTTCGG
*
77805354 CTTTTCTG
1 CTTTTCGG
77805362 CTTTTCGG
1 CTTTTCGG
*
77805370 CTTTTTGG
1 CTTTTCGG
*
77805378 CATTTCGG
1 CTTTTCGG
77805386 CTTTT
1 CTTTT
77805391 ACCGATACAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
7 5 0.17
8 25 0.83
ACGTcount: A:0.02, C:0.20, G:0.20, T:0.57
Consensus pattern (8 bp):
CTTTTCGG
Found at i:77806979 original size:17 final size:17
Alignment explanation
Indices: 77806957--77806992 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
77806947 GAGTAGAAAG
77806957 ATAGAATCTTTCATTGC
1 ATAGAATCTTTCATTGC
77806974 ATAGAATCTTTCATTGC
1 ATAGAATCTTTCATTGC
77806991 AT
1 AT
77806993 GCTTGTCGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (17 bp):
ATAGAATCTTTCATTGC
Found at i:77810308 original size:40 final size:40
Alignment explanation
Indices: 77810206--77810373 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
77810196 AAATTGAATG
* * * * *
77810206 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
77810246 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
77810286 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * * *
77810326 CTATCCGGGCTAAGACCTGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
77810366 ATATCCGG
1 ATATCCGG
77810374 TTATATTCCG
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 4 0.04
40 100 0.94
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:77819022 original size:40 final size:40
Alignment explanation
Indices: 77818967--77819216 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
77818957 AACATTGGAA
77818967 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77819007 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77819047 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77819087 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
77819127 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
77819166 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
77819207 CTATATCCGG
1 ATATATCCGG
77819217 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:77820680 original size:40 final size:40
Alignment explanation
Indices: 77820627--77820811 Score: 275
Period size: 40 Copynumber: 4.6 Consensus size: 40
77820617 ACTACTTGCT
*
77820627 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
77820667 CAAATGCCGTCGGGTCTTAGCCCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
77820707 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
77820747 CAAATGCCTTC-GGAGCTTAGCCCAGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATA-TAGTAACTCGCA
77820787 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
77820812 TTATCATCCA
Statistics
Matches: 131, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 4 0.03
40 124 0.95
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:77820711 original size:80 final size:80
Alignment explanation
Indices: 77820627--77820815 Score: 310
Period size: 80 Copynumber: 2.4 Consensus size: 80
77820617 ACTACTTGCT
77820627 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCGTCGG-GTCTTAGCCC-
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCGTCGGAG-CTTAGCCCA
*
77820690 GAATATAGTAACTCGCA
65 GAAT-TAGTAACTAGCA
* *
77820707 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCGTCGGAGCTTAGCCCAG
*
77820772 AATTAGTCACTAGCA
66 AATTAGTAACTAGCA
77820787 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
77820816 CATCCAAATA
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
80 97 0.95
81 5 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCGTCGGAGCTTAGCCCAG
AATTAGTAACTAGCA
Found at i:77829387 original size:30 final size:30
Alignment explanation
Indices: 77829353--77829413 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
77829343 TCCTTAACTC
77829353 AAAC-TTTGACAAAATTACAATTTTGCCCCT
1 AAACTTTTG-CAAAATTACAATTTTGCCCCT
* * *
77829383 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
77829413 A
1 A
77829414 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:77834955 original size:27 final size:27
Alignment explanation
Indices: 77834925--77835216 Score: 222
Period size: 27 Copynumber: 10.9 Consensus size: 27
77834915 AGACCCCGAT
*
77834925 TTGTAAAATTTTTGAAATACCCCCAGA
1 TTGTAAAATTATTGAAATACCCCCAGA
***
77834952 TTGTAAAATTACCAAAATACCCCCAGA
1 TTGTAAAATTATTGAAATACCCCCAGA
* *
77834979 TTGTAAAATTATCGAAATACCCCCAGT
1 TTGTAAAATTATTGAAATACCCCCAGA
* * * * *
77835006 TTGCAAATTTATCGAAATACCCTCAAA
1 TTGTAAAATTATTGAAATACCCCCAGA
*** *
77835033 TTGTAAAATTACCAAAATACCCCCAGT
1 TTGTAAAATTATTGAAATACCCCCAGA
*
77835060 TTGTAAAATTACCT-AAATACCCCCA-A
1 TTGTAAAATTA-TTGAAATACCCCCAGA
* * *
77835086 TTTGTAAAATTACTAAAATACCCCC-GTG
1 -TTGTAAAATTATTGAAATACCCCCAG-A
* *
77835114 TTGTAAAATTATTGAAAT--GCCCTGA
1 TTGTAAAATTATTGAAATACCCCCAGA
**
77835139 CTTGTAAAATTATTGAAATA-CCCTTGA
1 -TTGTAAAATTATTGAAATACCCCCAGA
* * *
77835166 TTTGTGAAATTATCGAAATACCCTC-GA
1 -TTGTAAAATTATTGAAATACCCCCAGA
*
77835193 TTTGTGAAATT-TCTGAAATACCCC
1 -TTGTAAAATTAT-TGAAATACCCC
77835217 TATGAGGTAG
Statistics
Matches: 220, Mismatches: 35, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
25 3 0.01
26 22 0.10
27 192 0.87
28 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTATTGAAATACCCCCAGA
Found at i:77835105 original size:81 final size:80
Alignment explanation
Indices: 77834918--77835124 Score: 261
Period size: 81 Copynumber: 2.5 Consensus size: 80
77834908 GTCGTTAAGA
* * *
77834918 CCCCGATTTGTAAAATTTTTGAAATACCCCCAGATTGTAAAATTACCAAAATACCCCCAGATTGT
1 CCCCAATTTGTAAAA-TTATGAAATACCCCCAAATTGTAAAATTACCAAAATACCCCCAGATTGT
*
77834983 AAAATTATCGAAATAC
65 AAAATTACCGAAATAC
* * * * *
77834999 CCCCAGTTTGCAAATTTATCGAAATACCCTCAAATTGTAAAATTACCAAAATACCCCCAGTTTGT
1 CCCCAATTTGTAAAATTAT-GAAATACCCCCAAATTGTAAAATTACCAAAATACCCCCAGATTGT
*
77835064 AAAATTACCTAAATAC
65 AAAATTACCGAAATAC
* ***
77835080 CCCCAATTTGTAAAATTACTAAAATACCCCCGTGTTGTAAAATTA
1 CCCCAATTTGTAAAATTA-TGAAATACCCCCAAATTGTAAAATTA
77835125 TTGAAATGCC
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
80 3 0.03
81 102 0.96
82 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (80 bp):
CCCCAATTTGTAAAATTATGAAATACCCCCAAATTGTAAAATTACCAAAATACCCCCAGATTGTA
AAATTACCGAAATAC
Found at i:77835235 original size:27 final size:27
Alignment explanation
Indices: 77835205--77835360 Score: 194
Period size: 27 Copynumber: 5.8 Consensus size: 27
77835195 TGTGAAATTT
*
77835205 CTGAAATACCCCTAT-GAGGTAGGATTA
1 CTGAAATACCCCTGTAG-GGTAGGATTA
77835232 CTGAAATACCCCTGTAGGGTAGGATTA
1 CTGAAATACCCCTGTAGGGTAGGATTA
*
77835259 -TCGAAATACCTCTGTAGGGTAGGATTA
1 CT-GAAATACCCCTGTAGGGTAGGATTA
*
77835286 C-CAGAATACCCCTGTAGGGTAGGATTA
1 CTGA-AATACCCCTGTAGGGTAGGATTA
*
77835313 C-CAGAATACCCCTGTAGGGTAGGATTA
1 CTGA-AATACCCCTGTAGGGTAGGATTA
* *
77835340 CCGAAATACCCTTGTAGGGTA
1 CTGAAATACCCCTGTAGGGTA
77835361 AAATGCCCGT
Statistics
Matches: 118, Mismatches: 6, Indels: 10
0.88 0.04 0.07
Matches are distributed among these distances:
26 2 0.02
27 114 0.97
28 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (27 bp):
CTGAAATACCCCTGTAGGGTAGGATTA
Found at i:77835294 original size:81 final size:81
Alignment explanation
Indices: 77835209--77835360 Score: 229
Period size: 81 Copynumber: 1.9 Consensus size: 81
77835199 AAATTTCTGA
* *
77835209 AATACCCCTAT-GAGGTAGGATTA-CTGAAATACCCCTGTAGGGTAGGATTATCGAAATA-CCTC
1 AATACCCCTATAG-GGTAGGATTACCAG-AATACCCCTGTAGGGTAGGATTACCGAAATACCCT-
77835271 TGTAGGGTAGGATTACCAG
63 TGTAGGGTAGGATTACCAG
*
77835290 AATACCCCTGTAGGGTAGGATTACCAGAATACCCCTGTAGGGTAGGATTACCGAAATACCCTTGT
1 AATACCCCTATAGGGTAGGATTACCAGAATACCCCTGTAGGGTAGGATTACCGAAATACCCTTGT
77835355 AGGGTA
66 AGGGTA
77835361 AAATGCCCGT
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
81 59 0.91
82 6 0.09
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (81 bp):
AATACCCCTATAGGGTAGGATTACCAGAATACCCCTGTAGGGTAGGATTACCGAAATACCCTTGT
AGGGTAGGATTACCAG
Found at i:77835413 original size:26 final size:26
Alignment explanation
Indices: 77835348--77835420 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
77835338 TACCGAAATA
* *
77835348 CCCTTGTAGGGTAAAATGCCCGTTTTG
1 CCCTTGTA-GGTAAAATGACTGTTTTG
* **
77835375 CTC-TAAAGAGTAAAATGACTGTTTTG
1 CCCTTGTAG-GTAAAATGACTGTTTTG
77835401 CCCTTGTAGGT-AAATGACTG
1 CCCTTGTAGGTAAAATGACTG
77835421 ACTTGGGCTA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
25 10 0.28
26 21 0.58
27 5 0.14
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (26 bp):
CCCTTGTAGGTAAAATGACTGTTTTG
Found at i:77843598 original size:13 final size:12
Alignment explanation
Indices: 77843574--77843611 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 12
77843564 AAAGAAACAG
77843574 ATGAAA-AATTA
1 ATGAAAGAATTA
77843585 ATGAAGAGAATTA
1 ATGAA-AGAATTA
*
77843598 ATGAATGAATTA
1 ATGAAAGAATTA
77843610 AT
1 AT
77843612 AAAATCAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 5 0.21
12 9 0.38
13 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.29
Consensus pattern (12 bp):
ATGAAAGAATTA
Found at i:77848102 original size:42 final size:41
Alignment explanation
Indices: 77847987--77848106 Score: 125
Period size: 43 Copynumber: 2.9 Consensus size: 41
77847977 GCTCATAAGC
* * **
77847987 TCATATA-ATGCCAACGTCCCAGACGTGGTCTTACGTGAAA
1 TCATATACATGCCAATGTCCCAGACATGGTCTTACACGAAA
* * * *
77848027 TCAAATATCAATGCCACTGACCCAGACAGGGTCTTACACGAAA
1 TCATATA-C-ATGCCAATGTCCCAGACATGGTCTTACACGAAA
*
77848070 TCATATACGATGCCAATGTCCCAGGCATGGTCTTACA
1 TCATATAC-ATGCCAATGTCCCAGACATGGTCTTACA
77848107 TGTAAATAAA
Statistics
Matches: 63, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
40 6 0.10
42 25 0.40
43 32 0.51
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (41 bp):
TCATATACATGCCAATGTCCCAGACATGGTCTTACACGAAA
Found at i:77861507 original size:40 final size:40
Alignment explanation
Indices: 77861306--77861499 Score: 300
Period size: 40 Copynumber: 4.9 Consensus size: 40
77861296 ATTCGGATTG
*
77861306 ATAACCGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
77861345 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTAAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
77861385 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
77861425 AAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
77861465 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
77861500 AAGCTATATC
Statistics
Matches: 140, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 13 0.09
40 127 0.91
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:77861526 original size:39 final size:40
Alignment explanation
Indices: 77861306--77861526 Score: 171
Period size: 40 Copynumber: 5.6 Consensus size: 40
77861296 ATTCGGATTG
* * * * *
77861306 ATAACCGGGCT-AAGCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTAACT
* ** * * *
77861345 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTAA-T
1 ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAG-TAACT
* ** * *
77861385 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTAACT
* ** * *
77861425 AAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTAACT
** *
77861465 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCT
1 ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTAA-CT
*
77861505 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAACCCCGAAGG
77861527 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 27 0.17
40 129 0.82
41 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTAACT
Found at i:77869164 original size:46 final size:48
Alignment explanation
Indices: 77869113--77869243 Score: 166
Period size: 46 Copynumber: 2.8 Consensus size: 48
77869103 ATGGTTGAGC
77869113 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * *
77869160 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
77869205 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77869244 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 29 0.41
48 2 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Found at i:77872131 original size:79 final size:80
Alignment explanation
Indices: 77872001--77872193 Score: 327
Period size: 79 Copynumber: 2.4 Consensus size: 80
77871991 ATTCGGATTG
*
77872001 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
77872065 TTTGTGC-AGTTACT
66 ATTGTGCGAGTTACT
* *
77872079 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
77872144 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
*
77872159 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
77872194 AAGCTATATC
Statistics
Matches: 106, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
78 13 0.12
79 54 0.51
80 39 0.37
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.22
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACT
Found at i:77872201 original size:40 final size:40
Alignment explanation
Indices: 77872001--77872193 Score: 327
Period size: 40 Copynumber: 4.9 Consensus size: 40
77871991 ATTCGGATTG
77872001 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
77872040 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
77872079 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
77872119 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
77872159 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
77872194 AAGCTATATC
Statistics
Matches: 145, Mismatches: 7, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
39 49 0.34
40 96 0.66
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:77875111 original size:16 final size:16
Alignment explanation
Indices: 77875087--77875118 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
77875077 CGAATGTGCA
*
77875087 GCTTTAAAGACTCTGT
1 GCTTCAAAGACTCTGT
77875103 GCTTCAAAGACTCTGT
1 GCTTCAAAGACTCTGT
77875119 TAGTGACCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (16 bp):
GCTTCAAAGACTCTGT
Found at i:77877140 original size:29 final size:29
Alignment explanation
Indices: 77877108--77877210 Score: 188
Period size: 29 Copynumber: 3.6 Consensus size: 29
77877098 CTCCGAGCTT
77877108 GCACACTTAGTGCCAAATATTTCCAGCAC
1 GCACACTTAGTGCCAAATATTTCCAGCAC
*
77877137 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCAAATATTTCCAGCAC
*
77877166 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCAAATATTTCCAGCAC
77877195 GCACACTTAGTGCCAA
1 GCACACTTAGTGCCAA
77877211 TCTCGTCACC
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
GCACACTTAGTGCCAAATATTTCCAGCAC
Found at i:77877140 original size:58 final size:58
Alignment explanation
Indices: 77877049--77877209 Score: 182
Period size: 58 Copynumber: 2.8 Consensus size: 58
77877039 TACTCGATTT
** * * ** * *
77877049 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTGCCAAAT-ATTTCCAGCACGCACACTTAGTGCCATATACCTCC-AGCA
* **
77877107 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAGCA
*
77877165 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCA
77877210 ATCTCGTCAC
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
57 4 0.05
58 81 0.92
59 3 0.03
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (58 bp):
CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAGCA
Found at i:77885241 original size:29 final size:29
Alignment explanation
Indices: 77885209--77885281 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
77885199 CTCCGAGCTT
77885209 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAC
77885238 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAC
77885267 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
77885282 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAC
Found at i:77889837 original size:40 final size:40
Alignment explanation
Indices: 77889771--77889937 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
77889761 AAATTGAATG
* * *
77889771 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
77889810 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
77889850 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
77889890 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
77889930 ATATCCGG
1 ATATCCGG
77889938 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:77897873 original size:40 final size:40
Alignment explanation
Indices: 77897771--77897938 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
77897761 AAATTGAATG
* * * * *
77897771 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
77897811 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
77897851 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * * *
77897891 CTATCCGGGCTAAGACCTGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
77897931 ATATCCGG
1 ATATCCGG
77897939 TTATATTCCG
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 4 0.04
40 100 0.94
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:77902328 original size:27 final size:26
Alignment explanation
Indices: 77902279--77902330 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
77902269 GGTTAAATTG
* *
77902279 CATTTTGGTTTTTCTATTTAAAAAAT
1 CATTTCGGCTTTTCTATTTAAAAAAT
77902305 CATTTCGGCTTTTCTATTTAAAAAAT
1 CATTTCGGCTTTTCTATTTAAAAAAT
77902331 AGGTAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.50
Consensus pattern (26 bp):
CATTTCGGCTTTTCTATTTAAAAAAT
Found at i:77908488 original size:7 final size:7
Alignment explanation
Indices: 77908476--77908526 Score: 86
Period size: 7 Copynumber: 7.4 Consensus size: 7
77908466 AATCTGACGA
77908476 TAGGGTT
1 TAGGGTT
77908483 TAGGGTT
1 TAGGGTT
77908490 TA-GGTT
1 TAGGGTT
77908496 TAGGGTT
1 TAGGGTT
*
77908503 TAAGGTT
1 TAGGGTT
77908510 TAGGGTT
1 TAGGGTT
77908517 TAGGGTT
1 TAGGGTT
77908524 TAG
1 TAG
77908527 ATATCCTCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
6 6 0.15
7 35 0.85
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43
Consensus pattern (7 bp):
TAGGGTT
Found at i:77908501 original size:20 final size:21
Alignment explanation
Indices: 77908476--77908526 Score: 86
Period size: 20 Copynumber: 2.5 Consensus size: 21
77908466 AATCTGACGA
77908476 TAGGGTTTAGGGTTTA-GGTT
1 TAGGGTTTAGGGTTTAGGGTT
*
77908496 TAGGGTTTAAGGTTTAGGGTT
1 TAGGGTTTAGGGTTTAGGGTT
77908517 TAGGGTTTAG
1 TAGGGTTTAG
77908527 ATATCCTCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43
Consensus pattern (21 bp):
TAGGGTTTAGGGTTTAGGGTT
Found at i:77915449 original size:50 final size:49
Alignment explanation
Indices: 77915335--77915510 Score: 185
Period size: 50 Copynumber: 3.5 Consensus size: 49
77915325 CTGGTACGCA
* * * **
77915335 TAGTAGCCTGCACTTAGTACTACACATGCGACCAGCAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCACCAGTCTAATACACG
*
77915384 TAGTAGCCTGCACTTAGTACTAAACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CACCAGTCTAATACACG
* *** * *
77915434 TAGTAGCCTGCACTTAGTACTACACACGTGATCA-CAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCACCAG---TCTAATACACG
77915485 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
77915511 TGCGACCTCA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
47 2 0.02
48 2 0.02
49 28 0.26
50 40 0.37
51 36 0.33
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCACCAGTCTAATACACG
Found at i:77915518 original size:101 final size:99
Alignment explanation
Indices: 77915335--77915521 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
77915325 CTGGTACGCA
* * *
77915335 TAGTAGCCTGCACTTAGTACTACACATGCGACCAGCAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAGCAGTCGGGTACACATAGTAGCCTGCACTTA
*
77915400 GTACTAAACACGTGACCTCACCATCTAATACACG
66 GTACTAAACACGCGACCTCACCATCTAATACACG
* * *
77915434 TAGTAGCCTGCACTTAGTACTACACACGTGATCA-CAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAGCAG---TCGGGTACACATAGTAGCCTGCAC
* *
77915498 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTAAACACGCGACCTCAC
77915522 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 3 0.04
99 31 0.41
101 42 0.55
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAGCAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTAAACACGCGACCTCACCATCTAATACACG
Found at i:77917778 original size:40 final size:40
Alignment explanation
Indices: 77917723--77917890 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
77917713 TGAATGATAC
* *
77917723 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
77917763 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
77917803 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
77917843 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
77917883 CC-GGCTAA
1 CCGGGCTAA
77917891 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:77926124 original size:653 final size:650
Alignment explanation
Indices: 77924877--77926182 Score: 2551
Period size: 653 Copynumber: 2.0 Consensus size: 650
77924867 TTAATCATGA
77924877 CCAAAAATTATGGTGTTGTGATGTATTCGGCCATGGTACATCCATAAGTATGATTTATGCTCATT
1 CCAAAAATTATGGTGTTGTGATGTATTCGGCCATGGTACATCCATAAGTATGATTTATGCTCATT
77924942 GCATGGAAAGTAAGATTTGTGTTTTGGATTTATGTTCATGTTTAGTTACAATCAACTTGAGATTC
66 GCATGGAAAGTAAGATTTGTGTTTTGGATTTATGTTCATGTTTAGTTACAATCAACTTGAGATTC
77925007 GGCTCTAGCATTATATATATGTATATATGTTTGCACATGATGTATTGGTATGACATATATACTAT
131 GGCTCTAGCATTATATATATGTATATATGTTTGCACATGATGTATTGGTATGACATATATACTAT
*
77925072 CTCAAGGTATATATTTGCTTATGATGATGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAG
196 CTCAAGGTATATATTTACTTATGATGATGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAG
77925137 TTACAATATGGAATGCATTAGTTAGTAAAATGTATGCTGTTTTTGTGTGGATTAAGTGTATAATT
261 TTACAATATGGAATGCATTAGTTAGTAAAATGTATGCTGTTTTTGTGTGGATTAAGTGTATAATT
77925202 GGCCTCAACATGGACATGCATATTCGGCCACATGAGGGGGTTAGTGTGCATGCATTCGGTTAGAG
326 GGCCTCAACATGGACATGCATATTCGGCCACATGAGGGGGTTAGTGTGCATGCATTCGGTTAGAG
77925267 GCAAGCATATTGATGCCTATTCTTAGCTTGGAAGATTCGGCTAAGGAGAGTACTAACTAATGTGT
391 GCAAGCATATTGATGCCTATTCTTAGCTTGGAAGATTCGGCTAAGGAGAGTACTAACTAATGTGT
77925332 TGAATTCGATTCCTGATTTCGTACACATGTGACTCTAATGTCTAATGTATATAAGGGCTAAGTAC
456 TGAATTCGATTCCTGATTTCGTACACATGTGACTCTAATGTCTAATGTATATAAGGGCTAAGTAC
77925397 CTTGAGCTTCACTTTGATGTTTGAATGAATTGTATTGAATTGCTTGTTGTGATTAAAAATTGTGC
521 CTTGAGCTTCACTTTGATGTTTGAATGAATTGTATTGAATTGCTTGTTGTGATTAAAAATTGTGC
77925462 ATGACCATTGTGTATTTGAGCTAAAGGATGGCCATATGACCATTTAAACTCCTTGTCATATTCGG
586 ATGACCATTGTGTATTTGAGCTAAAGGATGGCCATATGACCATTTAAACTCCTTGTCATATTCGG
*
77925527 CCAAGAATTATGGTGTTGTGATGTATTCGGCCATGGTACATCCATAAGTATGATTTATGCTCATT
1 CCAAAAATTATGGTGTTGTGATGTATTCGGCCATGGTACATCCATAAGTATGATTTATGCTCATT
77925592 GCATGGAAAGTAAGATTTGTGTTTTGGATTTATGTTCATGTTTAGTTACAATCAACTTGAGATTC
66 GCATGGAAAGTAAGATTTGTGTTTTGGATTTATGTTCATGTTTAGTTACAATCAACTTGAGATTC
77925657 GGCTCTAGCA-TATATATATGTATATATGTTTGCACATGATGTATTGGTATGACATATATACTAT
131 GGCTCTAGCATTATATATATGTATATATGTTTGCACATGATGTATTGGTATGACATATATACTAT
77925721 CTCAAGGTATATATTTACTTATGATGATGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAG
196 CTCAAGGTATATATTTACTTATGATGATGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAG
77925786 TTACAATATGGAATGCATTAGTTAGTAAAATGTATGCTGTTTTTGTGTGGGATTAAGTGTATAAT
261 TTACAATATGGAATGCATTAGTTAGTAAAATGTATGCTGTTTTTGTGT-GGATTAAGTGTATAAT
77925851 TGGCCTCAACATGGACATGCATATTCGGCCACATGAAGGGGGGGTTAGTGTGCATGCATTCGGTT
325 TGGCCTCAACATGGACATGCATATTCGGCCACATG-A--GGGGGTTAGTGTGCATGCATTCGGTT
77925916 AGAGGCAAGCATATTGATGCCTATTCTTAGCTTGGAAGATTCGGCTAAGGAGAGTACTAACTAAT
387 AGAGGCAAGCATATTGATGCCTATTCTTAGCTTGGAAGATTCGGCTAAGGAGAGTACTAACTAAT
77925981 GTGTTGAATTCGATTCCTGATTTCGTACACATGTGACTCTAATGTCTAATGTATATAAGGGCTAA
452 GTGTTGAATTCGATTCCTGATTTCGTACACATGTGACTCTAATGTCTAATGTATATAAGGGCTAA
77926046 GTACCTTGAGCTTCACTTTGATGTTTGAATGAATTGTATTGAATTGCTTGTTGTGATTAAAAATT
517 GTACCTTGAGCTTCACTTTGATGTTTGAATGAATTGTATTGAATTGCTTGTTGTGATTAAAAATT
77926111 GTGCATGACCATTGTGTATTTGAGCTAAAGGATGGCCATATGACCATTTAAACTCCTTGTCATAT
582 GTGCATGACCATTGTGTATTTGAGCTAAAGGATGGCCATATGACCATTTAAACTCCTTGTCATAT
77926176 TCGG
647 TCGG
77926180 CCA
1 CCA
77926183 TAAGCTATCA
Statistics
Matches: 650, Mismatches: 2, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
649 166 0.26
650 190 0.29
651 1 0.00
653 293 0.45
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (650 bp):
CCAAAAATTATGGTGTTGTGATGTATTCGGCCATGGTACATCCATAAGTATGATTTATGCTCATT
GCATGGAAAGTAAGATTTGTGTTTTGGATTTATGTTCATGTTTAGTTACAATCAACTTGAGATTC
GGCTCTAGCATTATATATATGTATATATGTTTGCACATGATGTATTGGTATGACATATATACTAT
CTCAAGGTATATATTTACTTATGATGATGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAG
TTACAATATGGAATGCATTAGTTAGTAAAATGTATGCTGTTTTTGTGTGGATTAAGTGTATAATT
GGCCTCAACATGGACATGCATATTCGGCCACATGAGGGGGTTAGTGTGCATGCATTCGGTTAGAG
GCAAGCATATTGATGCCTATTCTTAGCTTGGAAGATTCGGCTAAGGAGAGTACTAACTAATGTGT
TGAATTCGATTCCTGATTTCGTACACATGTGACTCTAATGTCTAATGTATATAAGGGCTAAGTAC
CTTGAGCTTCACTTTGATGTTTGAATGAATTGTATTGAATTGCTTGTTGTGATTAAAAATTGTGC
ATGACCATTGTGTATTTGAGCTAAAGGATGGCCATATGACCATTTAAACTCCTTGTCATATTCGG
Found at i:77926614 original size:40 final size:40
Alignment explanation
Indices: 77926559--77926726 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
77926549 TGAATGATAC
* *
77926559 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
* *
77926599 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* ** *
77926639 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
77926679 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
77926719 CC-GGCTAA
1 CCGGGCTAA
77926727 ATTCTGAAGA
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 5 0.05
40 102 0.94
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:77928325 original size:18 final size:18
Alignment explanation
Indices: 77928299--77928343 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
77928289 CCTTGTATTT
*
77928299 TCTCAATTTAAGCCCGAA
1 TCTCGATTTAAGCCCGAA
77928317 TCTCGATTTAAGCCCGAA
1 TCTCGATTTAAGCCCGAA
77928335 TCTCGATTT
1 TCTCGATTT
77928344 CCTTCATCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (18 bp):
TCTCGATTTAAGCCCGAA
Found at i:77930986 original size:17 final size:17
Alignment explanation
Indices: 77930964--77931001 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
77930954 AAAATTCGAG
77930964 TAAATCAATATCTTATA
1 TAAATCAATATCTTATA
77930981 TAAATCAATATCTTATA
1 TAAATCAATATCTTATA
77930998 TAAA
1 TAAA
77931002 ATATTTGTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAATCAATATCTTATA
Found at i:77931152 original size:19 final size:19
Alignment explanation
Indices: 77931128--77931165 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
77931118 CAATGTATTG
*
77931128 TAAAGAAAAGAGAGAAAAA
1 TAAAGAAAACAGAGAAAAA
*
77931147 TAAAGAATACAGAGAAAAA
1 TAAAGAAAACAGAGAAAAA
77931166 CAACTACAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.18, T:0.08
Consensus pattern (19 bp):
TAAAGAAAACAGAGAAAAA
Found at i:77939178 original size:47 final size:47
Alignment explanation
Indices: 77939121--77939278 Score: 173
Period size: 47 Copynumber: 3.4 Consensus size: 47
77939111 ATGACATGTC
*
77939121 CCAGACATGGTCTTACA-TTAGCTCATCCATTAAGTCGATGCCATGCA
1 CCAGACATGGTCTTACACTGA-CTCATCCATTAAGTCGATGCCATGCA
* **
77939168 CCAGACATGGTCTTACACTGACTCATCCATTAAGTCGATGTCATGTT
1 CCAGACATGGTCTTACACTGACTCATCCATTAAGTCGATGCCATGCA
* * * * * *
77939215 CTAGACATGGTCTTACACTAACACAT-CTTTTAGTCGAT-ACATGTC-
1 CCAGACATGGTCTTACACTGACTCATCCATTAAGTCGATGCCATG-CA
77939260 CCAGACAT-GTCTTACACTG
1 CCAGACATGGTCTTACACTG
77939279 GCTTATATCT
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
44 10 0.10
45 11 0.11
46 10 0.10
47 63 0.66
48 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (47 bp):
CCAGACATGGTCTTACACTGACTCATCCATTAAGTCGATGCCATGCA
Found at i:77939314 original size:91 final size:94
Alignment explanation
Indices: 77939107--77939324 Score: 234
Period size: 91 Copynumber: 2.4 Consensus size: 94
77939097 AGGGTATAAT
* * * *
77939107 ACCGATGACATGTCCCAGACATGGTCTTACATTAGCTCATCCATTAAGTCGATGCCATGCACCAG
1 ACCGATGACATGTCCCAGACATGGTCTTACACTAACACATCCATTAAGTCGATGACATGCACCAG
77939172 ACATGGTCTTACACTGACTCATCCATTAAG
66 ACATGGTCTTACACTGACTCAT-CATTAAG
* * * * * *
77939202 -TCGATGTCATGTTCTAGACATGGTCTTACACTAACACAT-CTTTTAGTCGAT-ACATGTC-CCA
1 ACCGATGACATGTCCCAGACATGGTCTTACACTAACACATCCATTAAGTCGATGACATG-CACCA
* *
77939263 GACAT-GTCTTACACTGGCTTAT-ATCTCAAG
65 GACATGGTCTTACACTGACTCATCAT-T-AAG
*
77939293 ACCGATG-CATGTCCCAAACATGGTCTTACACT
1 ACCGATGACATGTCCCAGACATGGTCTTACACT
77939325 TGCTCCCATA
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
89 2 0.02
90 1 0.01
91 40 0.39
92 17 0.17
93 11 0.11
94 32 0.31
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (94 bp):
ACCGATGACATGTCCCAGACATGGTCTTACACTAACACATCCATTAAGTCGATGACATGCACCAG
ACATGGTCTTACACTGACTCATCATTAAG
Found at i:77946802 original size:47 final size:47
Alignment explanation
Indices: 77946733--77946833 Score: 166
Period size: 47 Copynumber: 2.1 Consensus size: 47
77946723 AGGGTATAAT
* * *
77946733 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTATTAA
1 GTCGATGCCATATCCCAGACATGGTCTTACACTGACTCATCCATTAA
77946780 GTCGATGCCATATCCCAGACATGGTCTTACACTGACTCATCCATTAA
1 GTCGATGCCATATCCCAGACATGGTCTTACACTGACTCATCCATTAA
*
77946827 GTTGATG
1 GTCGATG
77946834 GGACATGGTC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (47 bp):
GTCGATGCCATATCCCAGACATGGTCTTACACTGACTCATCCATTAA
Found at i:77949172 original size:14 final size:14
Alignment explanation
Indices: 77949135--77949172 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
77949125 TCAGTAGTCT
77949135 ATATTAAATTTATA
1 ATATTAAATTTATA
*
77949149 ATATT--TTTTATA
1 ATATTAAATTTATA
77949161 ATATTAAATTTA
1 ATATTAAATTTA
77949173 AAAAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
12 11 0.55
14 9 0.45
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATTAAATTTATA
Found at i:77949210 original size:22 final size:21
Alignment explanation
Indices: 77949170--77949211 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
77949160 AATATTAAAT
77949170 TTAAAAAAATTAATGAATTTC
1 TTAAAAAAATTAATGAATTTC
77949191 TTAAAAAATCATTAAT-AATTT
1 TTAAAAAA--ATTAATGAATTT
77949212 GAAAAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 5 0.26
23 6 0.32
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (21 bp):
TTAAAAAAATTAATGAATTTC
Done.