Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 250 of 433
Found at i:77949770 original size:29 final size:29
Alignment explanation
Indices: 77949728--77949786 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
77949718 AGATGAAAGG
77949728 TGATAGGTTGAACATCCACTTAATAGCAT
1 TGATAGGTTGAACATCCACTTAATAGCAT
77949757 TGATAGGTTGAACATCCACTTAATAGCAT
1 TGATAGGTTGAACATCCACTTAATAGCAT
77949786 T
1 T
77949787 CATAACACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (29 bp):
TGATAGGTTGAACATCCACTTAATAGCAT
Found at i:77950642 original size:28 final size:28
Alignment explanation
Indices: 77950611--77950664 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
77950601 ATCTTGGTAA
77950611 CATGT-TGAC-AGCAAATGATATATCAAGT
1 CATGTATGACTAGC-AA-GATATATCAAGT
77950639 CATGTATGACTAGCAAGATATATCAA
1 CATGTATGACTAGCAAGATATATCAA
77950665 TGCACCAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 15 0.62
29 6 0.25
30 3 0.12
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (28 bp):
CATGTATGACTAGCAAGATATATCAAGT
Found at i:77951845 original size:23 final size:23
Alignment explanation
Indices: 77951815--77951861 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
77951805 CTATTTTTGC
*
77951815 TCCTTTTCTTTTTCAAGGATTCT
1 TCCTTTTCATTTTCAAGGATTCT
77951838 TCCTTTTCATTTTCAAGGATTCT
1 TCCTTTTCATTTTCAAGGATTCT
77951861 T
1 T
77951862 ATTTCTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.15, C:0.21, G:0.09, T:0.55
Consensus pattern (23 bp):
TCCTTTTCATTTTCAAGGATTCT
Found at i:77954705 original size:33 final size:34
Alignment explanation
Indices: 77954667--77954732 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
77954657 AATTTAATAT
*
77954667 AAATATAAGTAGTTCA-TTAAC-AAATTTTCAAGC
1 AAATATAAGTAG-TCACTTAACAAAACTTTCAAGC
77954700 AAATATAAGTAGTCACTTAACAAAACTTTCAAG
1 AAATATAAGTAGTCACTTAACAAAACTTTCAAG
77954733 AATAACATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 3 0.10
33 17 0.57
34 10 0.33
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (34 bp):
AAATATAAGTAGTCACTTAACAAAACTTTCAAGC
Found at i:77955078 original size:2 final size:2
Alignment explanation
Indices: 77955071--77955112 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
77955061 AACATACTTC
77955071 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77955111 TA
1 TA
77955113 GGGAGGTTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:77956224 original size:28 final size:27
Alignment explanation
Indices: 77956169--77956232 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
77956159 TTTTCCAAGT
*
77956169 CGTATGT-TGAAATTAACAAATTAATTA
1 CGTATGTGTGAAACTAACAAATT-ATTA
77956196 CCGTATGTGTGAAAACTAACAAATT-TTA
1 -CGTATGTGTG-AAACTAACAAATTATTA
77956224 CGTAATGTG
1 CGT-ATGTG
77956233 GGAAGTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 3 0.09
28 15 0.47
29 2 0.06
30 12 0.38
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (27 bp):
CGTATGTGTGAAACTAACAAATTATTA
Found at i:77959302 original size:40 final size:40
Alignment explanation
Indices: 77959246--77959448 Score: 243
Period size: 40 Copynumber: 5.1 Consensus size: 40
77959236 CGGAATTTAA
* *
77959246 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACGAATGCCTTCGGGACTTAGC
* * * *
77959286 CTGGTTATAGTAACTCGCACAAATCCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
77959326 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* * *
77959366 CCGGATATAATAACTCACAC-AATTGCCTTTGGG-CTTAGC
1 CCGGATATAGTAACTCGCACGAA-TGCCTTCGGGACTTAGC
* * *
77959405 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACGAATGCCTTCGGGACTTAGC
77959445 CCGG
1 CCGG
77959449 TTATCATCCG
Statistics
Matches: 140, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 107 0.76
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
Found at i:77959440 original size:79 final size:80
Alignment explanation
Indices: 77959267--77959448 Score: 242
Period size: 79 Copynumber: 2.3 Consensus size: 80
77959257 TACTCGCTCG
* * * * *
77959267 AATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATCCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATCCCTTCGGGACTTAGCCCGGAT
* *
77959332 ATAGTAACTCGCACG
66 ATAGTAACTAGCACA
* * *
77959347 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAATTGCCTTTGGG-CTTAGCCCGGA-
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATCCCTTCGGGACTTAGCCCGGAT
*
77959410 ATTAGTCACTAGCACA
66 A-TAGTAACTAGCACA
77959426 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
77959449 TTATCATCCG
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
78 1 0.01
79 45 0.50
80 44 0.49
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATCCCTTCGGGACTTAGCCCGGAT
ATAGTAACTAGCACA
Found at i:77965308 original size:39 final size:40
Alignment explanation
Indices: 77965262--77965468 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
77965252 CGGAATACAA
*
77965262 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
77965302 CC-GATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
77965341 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
77965381 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * *
77965421 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
77965461 CCGGATAT
1 CCGGATAT
77965469 CATTCAATTG
Statistics
Matches: 143, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.26
40 104 0.73
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:77968935 original size:48 final size:48
Alignment explanation
Indices: 77968871--77968998 Score: 193
Period size: 48 Copynumber: 2.7 Consensus size: 48
77968861 CAAGGTAAAT
* * * *
77968871 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGCG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
*
77968919 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
77968967 AGATGTATATTTGGTAAAGCCGAATGGCTAAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAAT
77968999 GTGCAATACG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
Found at i:77969022 original size:48 final size:47
Alignment explanation
Indices: 77968882--77969025 Score: 182
Period size: 48 Copynumber: 3.0 Consensus size: 47
77968872 TATATATGTG
* * * *
77968882 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGCGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTATGAGATGTGTATATT
77968930 TGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGA-GATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATG-TGTATATT
* * *
77968978 TGGTAAAGCCGAATGGCTAATGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATGTGTATATT
77969026 GTGGCCGAAT
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
48 83 0.98
49 2 0.02
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTATGAGATGTGTATATT
Found at i:77973048 original size:40 final size:40
Alignment explanation
Indices: 77972999--77973206 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
77972989 TCTTCGGAAT
* * *
77972999 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
77973038 TTAACCCGGATTTGGTGACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
77973078 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
77973118 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
77973158 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
77973198 TTAGCCCGG
1 TTAGCCCGG
77973207 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:77978395 original size:40 final size:40
Alignment explanation
Indices: 77978339--77978541 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 40
77978329 CGGAATTTAA
* * *
77978339 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
77978379 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77978419 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
77978459 CCGGATATAATAACTCTCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
77978498 TCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
77978538 CCGG
1 CCGG
77978542 TTATCATCCG
Statistics
Matches: 143, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.22
40 110 0.77
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77981232 original size:15 final size:15
Alignment explanation
Indices: 77981212--77981243 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
77981202 CATTTCACTA
*
77981212 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
77981227 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
77981242 TT
1 TT
77981244 TGCATACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:77984011 original size:43 final size:42
Alignment explanation
Indices: 77983933--77984013 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
77983923 GAGTTTACGT
**
77983933 GTAAGACCATATTTGGGATATGACATCGATATGAGATTTCAC
1 GTAAGACCATAGCTGGGATATGACATCGATATGAGATTTCAC
* *
77983975 GTAAGACCATAGCTGGGCTATTGGCATCGACT-TGAGATT
1 GTAAGACCATAGCTGGGATA-TGACATCGA-TATGAGATT
77984014 CCATGTAGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
42 17 0.52
43 15 0.45
44 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GTAAGACCATAGCTGGGATATGACATCGATATGAGATTTCAC
Found at i:77987982 original size:25 final size:24
Alignment explanation
Indices: 77987947--77987998 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
77987937 ACAAGCGCAA
*
77987947 CTCTTTATGAGCGTCCTGTTATAGG
1 CTCTTTATGAGCGTCCTGATAT-GG
* *
77987972 CTCTTTTTGAGCTTCCTGATATGG
1 CTCTTTATGAGCGTCCTGATATGG
77987996 CTC
1 CTC
77987999 ACTTGAACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.42
Consensus pattern (24 bp):
CTCTTTATGAGCGTCCTGATATGG
Found at i:78001836 original size:64 final size:64
Alignment explanation
Indices: 78001757--78001886 Score: 251
Period size: 64 Copynumber: 2.0 Consensus size: 64
78001747 CGATATTTGA
*
78001757 TAGGTGTTAAAAATAATATTTTTTTAGTCACATTTTTAATGCGTTTCTGGGTGATTATTCGATG
1 TAGGTGTTAAAAATAATATTTTTTTAGTCACATTCTTAATGCGTTTCTGGGTGATTATTCGATG
78001821 TAGGTGTTAAAAATAATATTTTTTTAGTCACATTCTTAATGCGTTTCTGGGTGATTATTCGATG
1 TAGGTGTTAAAAATAATATTTTTTTAGTCACATTCTTAATGCGTTTCTGGGTGATTATTCGATG
78001885 TA
1 TA
78001887 AATTGAGAAT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.27, C:0.08, G:0.18, T:0.46
Consensus pattern (64 bp):
TAGGTGTTAAAAATAATATTTTTTTAGTCACATTCTTAATGCGTTTCTGGGTGATTATTCGATG
Found at i:78005140 original size:29 final size:29
Alignment explanation
Indices: 78005101--78005179 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
78005091 CTTAATAATC
*
78005101 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
78005131 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
78005160 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
78005180 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:78006319 original size:17 final size:18
Alignment explanation
Indices: 78006282--78006319 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
78006272 CACTTTTTTT
78006282 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
78006301 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
78006318 TT
1 TT
78006320 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:78012937 original size:29 final size:29
Alignment explanation
Indices: 78012898--78012976 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
78012888 CTTAATAATC
*
78012898 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
78012928 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
78012957 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
78012977 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:78014116 original size:17 final size:18
Alignment explanation
Indices: 78014079--78014116 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
78014069 CACTTTTTTT
78014079 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
78014098 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
78014115 TT
1 TT
78014117 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:78014878 original size:18 final size:19
Alignment explanation
Indices: 78014848--78014885 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
78014838 TGGGATCATT
*
78014848 ACAGGCTTGGAGATATTGG
1 ACAGGCTTGGAGATAATGG
78014867 ACAGGC-TGGAGATAATGG
1 ACAGGCTTGGAGATAATGG
78014885 A
1 A
78014886 TTCGACTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.32, C:0.11, G:0.37, T:0.21
Consensus pattern (19 bp):
ACAGGCTTGGAGATAATGG
Found at i:78021122 original size:9 final size:9
Alignment explanation
Indices: 78021108--78021140 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
78021098 ATTCGAGTTG
78021108 ACTCGAATA
1 ACTCGAATA
*
78021117 ACTCGATTA
1 ACTCGAATA
78021126 ACTCGAATA
1 ACTCGAATA
78021135 ACTCGA
1 ACTCGA
78021141 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:78021131 original size:18 final size:18
Alignment explanation
Indices: 78021094--78021142 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
78021084 AATTCAAAAA
* *
78021094 AATAATTCGAGTTGACTCG
1 AATAACTCGA-TTAACTCG
78021113 AATAACTCGATTAACTCG
1 AATAACTCGATTAACTCG
78021131 AATAACTCGATT
1 AATAACTCGATT
78021143 CGTTTAACTC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 19 0.68
19 9 0.32
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (18 bp):
AATAACTCGATTAACTCG
Found at i:78021342 original size:2 final size:2
Alignment explanation
Indices: 78021335--78021383 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
78021325 ATGTATGTGC
78021335 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78021377 AT AT AT A
1 AT AT AT A
78021384 AGCATATCCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:78027521 original size:48 final size:48
Alignment explanation
Indices: 78027451--78027886 Score: 728
Period size: 48 Copynumber: 9.1 Consensus size: 48
78027441 TACAAGATAA
* *
78027451 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
78027499 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
78027547 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
78027595 AGATATGTATCTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
78027643 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
78027691 AGATGTGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
78027739 AGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
78027787 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
78027835 AGATATGTATATGTGGTAAAGCAGAATGACTAGTGTGAAATATGTAGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
78027883 AGAT
1 AGAT
78027887 GTGTGTATAT
Statistics
Matches: 364, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 364 1.00
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:78028077 original size:37 final size:37
Alignment explanation
Indices: 78028027--78028134 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
78028017 GGAAATATAT
78028027 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTT-TG
*
78028064 TCCGGGTAAGACCCAATGACTACGTGTGGAGACTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTTTG
* *
78028101 TCCGGGTAAGACCCGATAACTACGTGTGGGGACT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGACT
78028135 ATTCGAGCTA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
37 64 0.97
38 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGACTTTG
Found at i:78029552 original size:34 final size:34
Alignment explanation
Indices: 78029509--78029575 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
78029499 CTAACAATAT
78029509 GTTAGCTGCTTTTTAAGTCACGATGGATGATCCA
1 GTTAGCTGCTTTTTAAGTCACGATGGATGATCCA
78029543 GTTAGCTGCTTTTTAAGTCACGATGGATGATCC
1 GTTAGCTGCTTTTTAAGTCACGATGGATGATCC
78029576 GATACTGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (34 bp):
GTTAGCTGCTTTTTAAGTCACGATGGATGATCCA
Found at i:78037961 original size:46 final size:46
Alignment explanation
Indices: 78037911--78038083 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
78037901 TGGTTGAGCA
78037911 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78037957 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
78038002 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
78038050 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78038084 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:78038067 original size:93 final size:93
Alignment explanation
Indices: 78037908--78038078 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
78037898 GGATGGTTGA
* *
78037908 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78037973 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
78038001 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78038066 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78038079 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78045514 original size:46 final size:47
Alignment explanation
Indices: 78045460--78045632 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 47
78045450 TGGTTGAGCA
78045460 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTG
* * * *
78045506 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT--G
* * *
78045551 CATCTGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACT-
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTG
* *
78045599 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78045633 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.56
47 25 0.25
48 2 0.02
50 4 0.04
51 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTG
Found at i:78045616 original size:93 final size:93
Alignment explanation
Indices: 78045457--78045627 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
78045447 GGATGGTTGA
* *
78045457 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGT
78045522 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
78045550 GCATCTGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACT-CCCGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TGCCCAAACTCGTTGAG
78045614 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
78045628 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78066497 original size:37 final size:37
Alignment explanation
Indices: 78066412--78066517 Score: 146
Period size: 39 Copynumber: 2.9 Consensus size: 37
78066402 ATGGGTAAAA
** *
78066412 AATCTCGTTTCTAAATTTATTTGTTGATATTTTATTTTT
1 AATCTCGTTTCTAAATTTA-TTGTAAATATTTT-GTTTT
78066451 AATCTCGTTTCTAAATTTATTGTAAATATTTTGTTTT
1 AATCTCGTTTCTAAATTTATTGTAAATATTTTGTTTT
78066488 AATCTCGTTTCT-AATTTA-T-TAAATATTTTG
1 AATCTCGTTTCTAAATTTATTGTAAATATTTTG
78066518 AAACACCGTC
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
34 11 0.17
35 1 0.02
36 6 0.09
37 16 0.25
38 11 0.17
39 19 0.30
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.58
Consensus pattern (37 bp):
AATCTCGTTTCTAAATTTATTGTAAATATTTTGTTTT
Found at i:78072174 original size:93 final size:93
Alignment explanation
Indices: 78072062--78072232 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
78072052 CGCCCATAAG
* * **
78072062 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCTTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
78072127 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
78072155 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
78072220 ACGAGTTCGGATG
66 ACGAGCTCGGATG
78072233 GTCAAATATC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:78072230 original size:46 final size:46
Alignment explanation
Indices: 78072055--78072230 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
78072045 TGTAACCCGC
* ** **
78072055 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCTTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
78072101 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* *
78072151 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
78072194 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
78072231 TGGTCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.62
47 30 0.28
48 2 0.02
49 1 0.01
50 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:78072249 original size:46 final size:45
Alignment explanation
Indices: 78072106--78072249 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
78072096 CTTATCCATA
* * *
78072106 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-TACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATG----GTCAACATCCC
* * * * *
78072154 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGGTCAACATCC--C
*
78072199 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGGTCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGGTC-AACATCCC
78072245 AGTGA
1 AGTGA
78072250 CATGTCACTT
Statistics
Matches: 77, Mismatches: 13, Indels: 14
0.74 0.12 0.13
Matches are distributed among these distances:
43 5 0.06
45 1 0.01
46 37 0.48
47 29 0.38
48 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGGTCAACATCCC
Found at i:78074595 original size:28 final size:28
Alignment explanation
Indices: 78074562--78074644 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
78074552 GATAACAAGA
*
78074562 AAACCGAATAAAGAAATCCAAGATAGAG
1 AAACCGAATAAAGAAATCCAAGATAAAG
78074590 AAACCGAATAAAGAAATCC-AGAATAAAG
1 AAACCGAATAAAGAAATCCAAG-ATAAAG
* * *
78074618 AGATCCAGGATAAAGAAACCCAAGATA
1 A-AACC-GAATAAAGAAATCCAAGATA
78074645 CGATACTATG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.04
28 25 0.53
29 3 0.06
30 15 0.32
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.11
Consensus pattern (28 bp):
AAACCGAATAAAGAAATCCAAGATAAAG
Found at i:78074615 original size:15 final size:15
Alignment explanation
Indices: 78074558--78074635 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
78074548 CAAAGATAAC
*
78074558 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
78074572 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
78074587 GAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
78074600 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
78074615 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
78074630 AAGAAA
1 AAGAAA
78074636 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
13 8 0.15
14 14 0.26
15 31 0.58
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:78074644 original size:15 final size:15
Alignment explanation
Indices: 78074569--78074644 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
78074559 AGAAAACCGA
78074569 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
78074584 ATAGAGAAA-CCGA-
1 ATAAAGAAATCCAAG
78074597 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
78074611 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
78074627 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
78074642 ATA
1 ATA
78074645 CGATACTATG
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
13 9 0.18
14 5 0.10
15 34 0.69
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:78077067 original size:17 final size:17
Alignment explanation
Indices: 78077045--78077078 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
78077035 ATAACCATAT
78077045 CATAAGACCATATATAC
1 CATAAGACCATATATAC
78077062 CATAAGACCATATATAC
1 CATAAGACCATATATAC
78077079 AAAATGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.24, G:0.06, T:0.24
Consensus pattern (17 bp):
CATAAGACCATATATAC
Found at i:78081528 original size:29 final size:28
Alignment explanation
Indices: 78081494--78081596 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
78081484 TACTCAATCA
*
78081494 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
78081523 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
78081552 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
78081581 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
78081597 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:78088432 original size:29 final size:28
Alignment explanation
Indices: 78088398--78088500 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
78088388 TACTCAATCA
*
78088398 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
78088427 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
78088456 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
78088485 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
78088501 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:78092300 original size:45 final size:44
Alignment explanation
Indices: 78092225--78092309 Score: 102
Period size: 45 Copynumber: 1.9 Consensus size: 44
78092215 AAGATAGAAA
78092225 AAAATAAAATAAGATAAAGAGATAACAAAATAGAAA-AATAGTCG
1 AAAATAAAATAAGATAAAGAGATAACAAAATA-AAATAATAGTCG
* * *
78092269 AAAA-AAAATAATAGTAAAGTGAATAATAAAATAAAATAATA
1 AAAATAAAATAAGA-TAAAGAG-ATAACAAAATAAAATAATA
78092310 CATATAAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
43 8 0.23
44 13 0.37
45 14 0.40
ACGTcount: A:0.68, C:0.02, G:0.11, T:0.19
Consensus pattern (44 bp):
AAAATAAAATAAGATAAAGAGATAACAAAATAAAATAATAGTCG
Found at i:78092338 original size:6 final size:6
Alignment explanation
Indices: 78092323--78092399 Score: 56
Period size: 6 Copynumber: 13.5 Consensus size: 6
78092313 ATAAGTTTAA
* * * *
78092323 AAAAAT -AAAAT -AAAA- ACAAAT AACAAT AAAAAT AAAAGT ACAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* *
78092368 AAAAGT AAAAAT --AAAT AAAATAT AAAACT AAA
1 AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT AAA
78092400 TAAAGTCACT
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
4 4 0.07
5 12 0.22
6 33 0.60
7 6 0.11
ACGTcount: A:0.75, C:0.05, G:0.03, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:78092355 original size:12 final size:12
Alignment explanation
Indices: 78092340--78092399 Score: 63
Period size: 12 Copynumber: 5.1 Consensus size: 12
78092330 AAATAAAAAC
78092340 AAATAACAA-TAA
1 AAATAA-AAGTAA
*
78092352 AAATAAAAGTAC
1 AAATAAAAGTAA
78092364 AAATAAAAGTAA
1 AAATAAAAGTAA
78092376 AAAT-AAA-TAA
1 AAATAAAAGTAA
*
78092386 AATATAAAACTAA
1 AA-ATAAAAGTAA
78092399 A
1 A
78092400 TAAAGTCACT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
10 5 0.12
11 7 0.17
12 26 0.62
13 4 0.10
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.18
Consensus pattern (12 bp):
AAATAAAAGTAA
Found at i:78092365 original size:17 final size:16
Alignment explanation
Indices: 78092323--78092403 Score: 65
Period size: 16 Copynumber: 4.8 Consensus size: 16
78092313 ATAAGTTTAA
*
78092323 AAAAATAAAATAAAAAC
1 AAAAAT-AAATAAAAAT
*
78092340 AAATAA-CAATAAAAAT
1 AAA-AATAAATAAAAAT
* *
78092356 AAAAGTACAAATAAAAGT
1 AAAA--ATAAATAAAAAT
78092374 AAAAATAAATAAAATAT
1 AAAAATAAATAAAA-AT
*
78092391 AAAACTAAATAAA
1 AAAAATAAATAAA
78092404 GTCACTGATT
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
15 1 0.02
16 20 0.38
17 17 0.33
18 14 0.27
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.17
Consensus pattern (16 bp):
AAAAATAAATAAAAAT
Found at i:78092376 original size:24 final size:22
Alignment explanation
Indices: 78092329--78092382 Score: 74
Period size: 24 Copynumber: 2.4 Consensus size: 22
78092319 TTAAAAAAAT
78092329 AAAATAAAAACAAATAACAATA
1 AAAATAAAAACAAATAACAATA
78092351 AAAATAAAAGTACAAATAA-AAGTA
1 AAAATAAAA--ACAAATAACAA-TA
78092375 AAAATAAA
1 AAAATAAA
78092383 TAAAATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.31
23 2 0.07
24 18 0.62
ACGTcount: A:0.76, C:0.06, G:0.04, T:0.15
Consensus pattern (22 bp):
AAAATAAAAACAAATAACAATA
Found at i:78100879 original size:35 final size:32
Alignment explanation
Indices: 78100812--78100879 Score: 91
Period size: 35 Copynumber: 2.0 Consensus size: 32
78100802 CCCATTCTCC
* *
78100812 TTCTCTATTTTTCCTTCCCCTTTCTTTTCCTT
1 TTCTCTATTTTTCCTTCCCCTCTCTGTTCCTT
78100844 TTCTCTTATTTCTTCCTTCTCCCTCTCTGTTCCTT
1 TTCTC-TATTT-TTCCTTC-CCCTCTCTGTTCCTT
78100879 T
1 T
78100880 CCTTTTTTCC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
32 5 0.16
33 5 0.16
34 7 0.23
35 14 0.45
ACGTcount: A:0.03, C:0.35, G:0.01, T:0.60
Consensus pattern (32 bp):
TTCTCTATTTTTCCTTCCCCTCTCTGTTCCTT
Found at i:78102611 original size:30 final size:29
Alignment explanation
Indices: 78102575--78102668 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 29
78102565 CCAAAGATGT
78102575 AAATGTGTGGAGAAATAAGAAAATAATGGA
1 AAATGTGTGGAGAAATAAGAAAATAAT-GA
* * ** *
78102605 AAA--TGTGGACTACCATAAG--AAGGATGT
1 AAATGTGTGGA-GA-AATAAGAAAATAATGA
78102632 AAATGTGTGGAGAAATAAGAAAATAATAGA
1 AAATGTGTGGAGAAATAAGAAAATAAT-GA
78102662 AAATGTG
1 AAATGTG
78102669 GACTACCATA
Statistics
Matches: 47, Mismatches: 10, Indels: 14
0.66 0.14 0.20
Matches are distributed among these distances:
27 9 0.19
28 11 0.23
29 11 0.23
30 16 0.34
ACGTcount: A:0.50, C:0.03, G:0.26, T:0.21
Consensus pattern (29 bp):
AAATGTGTGGAGAAATAAGAAAATAATGA
Found at i:78102633 original size:57 final size:57
Alignment explanation
Indices: 78102570--78102685 Score: 223
Period size: 57 Copynumber: 2.0 Consensus size: 57
78102560 TTTTGCCAAA
*
78102570 GATGTAAATGTGTGGAGAAATAAGAAAATAATGGAAAATGTGGACTACCATAAGAAG
1 GATGTAAATGTGTGGAGAAATAAGAAAATAATAGAAAATGTGGACTACCATAAGAAG
78102627 GATGTAAATGTGTGGAGAAATAAGAAAATAATAGAAAATGTGGACTACCATAAGAAG
1 GATGTAAATGTGTGGAGAAATAAGAAAATAATAGAAAATGTGGACTACCATAAGAAG
78102684 GA
1 GA
78102686 AAAGTGTTCG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.48, C:0.05, G:0.26, T:0.21
Consensus pattern (57 bp):
GATGTAAATGTGTGGAGAAATAAGAAAATAATAGAAAATGTGGACTACCATAAGAAG
Found at i:78102649 original size:27 final size:27
Alignment explanation
Indices: 78102570--78102652 Score: 69
Period size: 28 Copynumber: 3.0 Consensus size: 27
78102560 TTTTGCCAAA
*
78102570 GATGTAAATGTGTGGAGAAATAAGAAAAT
1 GATGTAAATGTGTGGAGAAATAAG--AAG
* * * * *
78102599 AATGGAAA-ATGTGGACTACCATAAGAAG
1 GATGTAAATGTGTGGA-GA-AATAAGAAG
78102627 GATGTAAATGTGTGGAGAAATAAGAA
1 GATGTAAATGTGTGGAGAAATAAGAA
78102653 AATAATAGAA
Statistics
Matches: 40, Mismatches: 11, Indels: 8
0.68 0.19 0.14
Matches are distributed among these distances:
27 7 0.17
28 15 0.38
29 13 0.32
30 5 0.12
ACGTcount: A:0.47, C:0.04, G:0.28, T:0.22
Consensus pattern (27 bp):
GATGTAAATGTGTGGAGAAATAAGAAG
Found at i:78102680 original size:30 final size:30
Alignment explanation
Indices: 78102589--78102682 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
78102579 GTGTGGAGAA
*
78102589 ATAAGAAAATAATGGAAAATGTGGACTACC
1 ATAAGAAAATAATAGAAAATGTGGACTACC
* * ** * *
78102619 ATAAGAAGGAT-GTA-AATGTGTGGA-GA-A
1 ATAAGAA-AATAATAGAAAATGTGGACTACC
78102646 ATAAGAAAATAATAGAAAATGTGGACTACC
1 ATAAGAAAATAATAGAAAATGTGGACTACC
78102676 ATAAGAA
1 ATAAGAA
78102683 GGAAAAGTGT
Statistics
Matches: 46, Mismatches: 13, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
26 2 0.04
27 9 0.20
28 9 0.20
29 9 0.20
30 15 0.33
31 2 0.04
ACGTcount: A:0.51, C:0.06, G:0.22, T:0.20
Consensus pattern (30 bp):
ATAAGAAAATAATAGAAAATGTGGACTACC
Found at i:78123573 original size:40 final size:40
Alignment explanation
Indices: 78123518--78123727 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
78123508 AACATTGGAA
78123518 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78123558 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78123598 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
78123638 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
78123677 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
78123718 CTATATCCGG
1 ATATATCCGG
78123728 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:78127110 original size:40 final size:41
Alignment explanation
Indices: 78126989--78127129 Score: 168
Period size: 39 Copynumber: 3.6 Consensus size: 41
78126979 TATTCGAATG
**
78126989 ATATCCGGGCTAAGTTCCGAAGGCATTTGTGCTA-TTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGACT
* * *
78127029 ATATCCGAGATAAGTCCC-AAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGACT
*
78127068 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGACT
*
78127108 ATAT-CTGGCTAA-ATCCCGAAGG
1 ATATCCGGGCTAAGA-CCCGAAGG
78127130 TACTTGGGTT
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
38 1 0.01
39 50 0.56
40 36 0.40
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGACT
Found at i:78130558 original size:20 final size:21
Alignment explanation
Indices: 78130533--78130572 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
78130523 CTCTTGAAAT
78130533 AGGGC-ACACGCCAGTGTGGA
1 AGGGCAACACGCCAGTGTGGA
*
78130553 AGGGCAACACGCCTGTGTGG
1 AGGGCAACACGCCAGTGTGG
78130573 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.25, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCAGTGTGGA
Found at i:78134996 original size:39 final size:40
Alignment explanation
Indices: 78134892--78135111 Score: 349
Period size: 39 Copynumber: 5.6 Consensus size: 40
78134882 TATTCGAATG
*
78134892 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
78134932 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
78134972 ATATCCGGG-TAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
78135011 ATATCCGGGCTAAG-CCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
78135050 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
78135090 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
78135112 TACTTGGGTT
Statistics
Matches: 169, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 89 0.53
40 77 0.46
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:78135069 original size:79 final size:79
Alignment explanation
Indices: 78134892--78135111 Score: 338
Period size: 79 Copynumber: 2.8 Consensus size: 79
78134882 TATTCGAATG
* *
78134892 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAG-CCCGAAGGCA
78134957 TTTGTGCTATTGACT
65 TTTGTGCTATTGACT
*
78134972 ATATCCGGG-TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGCCCGAAGGCTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGCCCGAAGGCAT
78135036 TTGTGCTATTGACT
66 TTGTGCTATTGACT
* * *
78135050 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCT-AAGCCCGAAGG
78135112 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
78 37 0.28
79 84 0.64
80 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGCCCGAAGGCAT
TTGTGCTATTGACT
Found at i:78139281 original size:39 final size:40
Alignment explanation
Indices: 78139181--78139362 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
78139171 TCGAATGATG
* * *
78139181 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
78139221 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
78139261 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
78139299 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
78139340 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
78139363 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:78139326 original size:78 final size:80
Alignment explanation
Indices: 78139181--78139362 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
78139171 TCGAATGATG
* * * *
78139181 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
78139246 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
78139261 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
78139323 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
78139340 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
78139363 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:78144805 original size:48 final size:48
Alignment explanation
Indices: 78144650--78145032 Score: 664
Period size: 48 Copynumber: 8.0 Consensus size: 48
78144640 ATATACACAC
* * *
78144650 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTA-CAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
78144697 ATCTCATACATATTTCATACTAGCCATTCGGCTTTA-CACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
78144744 ATCTCATACATATTTCAAACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
78144792 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATAGAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
78144840 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
78144888 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
78144936 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
78144984 ATCTCATACATATTTCACACTAGCCATTC-GCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
78145031 AT
1 AT
78145033 ATTTGTCTTG
Statistics
Matches: 321, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 98 0.31
48 223 0.69
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:78150707 original size:39 final size:40
Alignment explanation
Indices: 78150603--78150822 Score: 349
Period size: 39 Copynumber: 5.6 Consensus size: 40
78150593 TATTCGAATG
78150603 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
78150643 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
78150683 ATATCCGGG-TAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
78150722 ATATCCGGGCTAAG-CCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
78150761 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
78150801 ATATCC-GGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
78150823 TACTTGGGTT
Statistics
Matches: 169, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 88 0.52
40 78 0.46
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:78150735 original size:79 final size:80
Alignment explanation
Indices: 78150603--78150822 Score: 349
Period size: 79 Copynumber: 2.8 Consensus size: 80
78150593 TATTCGAATG
*
78150603 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
78150668 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
*
78150683 ATATCCGGG-TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAG-CCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
78150746 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* * * *
78150761 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
78150823 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
78 39 0.30
79 81 0.62
80 11 0.08
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACT
Found at i:78161823 original size:96 final size:95
Alignment explanation
Indices: 78161653--78161917 Score: 343
Period size: 96 Copynumber: 2.8 Consensus size: 95
78161643 TTGCCAAAGC
* * * *
78161653 CATGTTCCAAACATGGTCTTACACTGGCTTACATGTTGAGGCCGACGCCATGTCCTAGACATGGT
1 CATGTTCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCTAGACATGGT
* *
78161718 TTTACACTAGCTCTTGA-CTCAATGCCGATG
66 CTTACACTAGCTC-TCATCTCAATGCCGATG
* * * * *
78161748 TCATGTTCCAGATATGGCCTTACATTGGCTCACATGTCGAGGCCAATGCCATGTCCCAGACATGG
1 -CATGTTCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCTAGACATGG
* * **
78161813 TCTTATACTAGTTCTCATCTCAATGTTGATG
65 TCTTACACTAGCTCTCATCTCAATGCCGATG
* *
78161844 CAATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCTAGACATGG
1 C-ATGTTCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCTAGACATGG
78161909 TCTTACACT
65 TCTTACACT
78161918 GGCACACATA
Statistics
Matches: 144, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
95 3 0.02
96 141 0.98
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (95 bp):
CATGTTCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCTAGACATGGT
CTTACACTAGCTCTCATCTCAATGCCGATG
Found at i:78161926 original size:48 final size:48
Alignment explanation
Indices: 78161651--78161926 Score: 250
Period size: 48 Copynumber: 5.8 Consensus size: 48
78161641 AATTGCCAAA
* * * * *
78161651 GCCATGTTCCAAACATGGTCTTACACTGGCTTACATGTTGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGAT
* * * * * *
78161699 GCCATGTCCTAGACATGGTTTTACACTAGCT--CTTGACTCAATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATG--TCGAGGCCGAT
* * * * * *
78161747 GTCATGTTCCAGATATGGCCTTACATTGGCTCACATGTCGAGGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGAT
* * * * * * * **
78161795 GCCATGTCCCAGACATGGTCTTATACTAGTTCTCATCTCAATGTTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGAT
* *
78161843 GCAATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGAT
* *
78161891 GCCATGTCCTAGACATGGTCTTACACTGGCACACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
78161927 ATCACCCAAC
Statistics
Matches: 175, Mismatches: 49, Indels: 8
0.75 0.21 0.03
Matches are distributed among these distances:
46 3 0.02
48 169 0.97
50 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGAT
Found at i:78162374 original size:30 final size:30
Alignment explanation
Indices: 78162340--78162400 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
78162330 AATTACTACC
78162340 AAAGCCTAGCTGAATTCTTTTTATACTAGA
1 AAAGCCTAGCTGAATTCTTTTTATACTAGA
78162370 AAAGCCTAGCTGAATTCTTTTTATACTAGA
1 AAAGCCTAGCTGAATTCTTTTTATACTAGA
78162400 A
1 A
78162401 TCAGCCCACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (30 bp):
AAAGCCTAGCTGAATTCTTTTTATACTAGA
Found at i:78163078 original size:8 final size:8
Alignment explanation
Indices: 78163065--78163094 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
78163055 AGTTTAACAC
78163065 ATAAAATA
1 ATAAAATA
78163073 ATAAAATA
1 ATAAAATA
78163081 ATAAAATA
1 ATAAAATA
78163089 ATAAAA
1 ATAAAA
78163095 AAAAATCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
ATAAAATA
Found at i:78166908 original size:149 final size:145
Alignment explanation
Indices: 78166638--78166933 Score: 511
Period size: 149 Copynumber: 2.0 Consensus size: 145
78166628 TTGCCAGACC
* *
78166638 CACTCCTAGGGTTCTTTTGTGGTCTACCCCTCGAGGGAGCATTACTCTCACATCTTTTTTCTTGT
1 CACTCCTAGGGTTCTTCTGTGGTCTACCCCTCGAGGGAGCATTACTCTCACATCTTCTTTCTTGT
* *
78166703 CTTTCTCCTCTATCTCAAGACAGTTTCGAAAAAAGTGGTCTAGTGAACCACGCTTAAAGTAGCCT
66 CTTTCTCCTCTATCTCAAGACAGTTTCGAAAAAAGTGGTCTAGTGAACCACACTTAAAGCAGCCT
78166768 CTATCATTACCTTGG
131 CTATCATTACCTTGG
78166783 CACTCCTAGGGTTCTTCTGTGGTCTACCCCTCGAGGGAGCATTACTCACTCTCACATCTTCTTTC
1 CACTCCTAGGGTTCTTCTGTGGTCTACCCCTCGAGGGAGCA-T--T-ACTCTCACATCTTCTTTC
*
78166848 TTGTCTTTCTCCTCTATCTCAAGACAGTTTCGAAAAAAGTGGTCTAGTGAATCACACTTAAAGCA
62 TTGTCTTTCTCCTCTATCTCAAGACAGTTTCGAAAAAAGTGGTCTAGTGAACCACACTTAAAGCA
78166913 GCCTCTATCATTACCTTGG
127 GCCTCTATCATTACCTTGG
78166932 CA
1 CA
78166934 AACACTGAAG
Statistics
Matches: 142, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
145 40 0.28
146 1 0.01
148 1 0.01
149 100 0.70
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (145 bp):
CACTCCTAGGGTTCTTCTGTGGTCTACCCCTCGAGGGAGCATTACTCTCACATCTTCTTTCTTGT
CTTTCTCCTCTATCTCAAGACAGTTTCGAAAAAAGTGGTCTAGTGAACCACACTTAAAGCAGCCT
CTATCATTACCTTGG
Found at i:78171820 original size:16 final size:17
Alignment explanation
Indices: 78171801--78171843 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
78171791 AGTAACAAAT
78171801 GGAAATAAA-ATAAAAG
1 GGAAATAAAGATAAAAG
78171817 GGAAATAAAGATAAAAG
1 GGAAATAAAGATAAAAG
*
78171834 TGAGAATAAA
1 GGA-AATAAA
78171844 CAATAAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.38
17 9 0.38
18 6 0.25
ACGTcount: A:0.65, C:0.00, G:0.21, T:0.14
Consensus pattern (17 bp):
GGAAATAAAGATAAAAG
Found at i:78171851 original size:19 final size:17
Alignment explanation
Indices: 78171801--78171851 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
78171791 AGTAACAAAT
78171801 GGAAAT-AAAATAAAAG
1 GGAAATAAAAATAAAAG
*
78171817 GGAAATAAAGATAAAAG
1 GGAAATAAAAATAAAAG
*
78171834 TGAGAATAAACAATAAAA
1 GGA-AATAAA-AATAAAA
78171852 ACAAATAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 6 0.21
17 11 0.38
18 6 0.21
19 6 0.21
ACGTcount: A:0.67, C:0.02, G:0.18, T:0.14
Consensus pattern (17 bp):
GGAAATAAAAATAAAAG
Found at i:78179363 original size:48 final size:48
Alignment explanation
Indices: 78179311--78179688 Score: 337
Period size: 48 Copynumber: 7.9 Consensus size: 48
78179301 TGGGTGAATT
** * * * *
78179311 GCCGATGCCATGTTTCAAACATGGTCTTACACTGGTTCAAATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAG
* * *** * *
78179359 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAG
* *
78179407 GCCGATGCCATGTCCCAGACATGGTCTTACAGTGGCTCACATGTCAAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAG
* ** * * * *
78179455 GCCAATGTTATGTCCCAGACATGGTCTTACACTAGCTCCCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAG
* * *
78179503 GCCGATGCCATGTCTCAGACATGGCCTTACACTGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAG
* * * * * *
78179551 GCTGATGCCATATCCCAGACATGGTCTTACACTAGCT-ATCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATGTCAAG
* * * * * **
78179599 GTCAATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTCAAG
* * * * *
78179647 GACGATGCCATGTCCCAGACCTAGTCTTACACTAGCACACAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
78179689 ATCACCCAAC
Statistics
Matches: 263, Mismatches: 64, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
47 1 0.00
48 260 0.99
49 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAG
Found at i:78179477 original size:96 final size:96
Alignment explanation
Indices: 78179310--78179682 Score: 462
Period size: 96 Copynumber: 3.9 Consensus size: 96
78179300 ATGGGTGAAT
** * * *
78179310 TGCCGATGCCATGTTTCAAACATGGTCTTACACTGGTTCAAATGTCGAGGCCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
* *
78179375 AAACATGGTCTTACACTAGCTCTTGTCTCAA
66 AGACATGGTCTTACACTAGCTCTCGTCTCAA
* * * * **
78179406 TGCCGATGCCATGTCCCAGACATGGTCTTACAGTGGCTCACATGTCAAAGCCAATGTTATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
* *
78179471 AGACATGGTCTTACACTAGCTCCCATCTCAA
66 AGACATGGTCTTACACTAGCTCTCGTCTCAA
* * * *
78179502 TGCCGATGCCATGTCTCAGACATGGCCTTACACTGGCTCACATGTCGAGGCTGATGCCATATCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
*
78179567 AGACATGGTCTTACACTAGCTATCGTCTCAA
66 AGACATGGTCTTACACTAGCTCTCGTCTCAA
* * * * * *
78179598 TGTCAATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTA-GACGATGCCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTCG-AGGCCGATGCCATGTC
* *
78179661 CCAGACCTAGTCTTACACTAGC
64 CCAGACATGGTCTTACACTAGC
78179683 ACACATATCA
Statistics
Matches: 235, Mismatches: 40, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
96 233 0.99
97 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
AGACATGGTCTTACACTAGCTCTCGTCTCAA
Found at i:78186563 original size:40 final size:40
Alignment explanation
Indices: 78186519--78186699 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
78186509 GCTCGATTGT
* * *
78186519 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGATT-TAGTAACTCGCACAAATGC
78186559 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
78186599 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
78186639 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
78186680 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACATAGCCCGGAT
78186700 ACCATTCGAA
Statistics
Matches: 118, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
39 2 0.02
40 87 0.74
41 27 0.23
42 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:78186617 original size:80 final size:81
Alignment explanation
Indices: 78186519--78186697 Score: 245
Period size: 80 Copynumber: 2.2 Consensus size: 81
78186509 GCTCGATTGT
* * * *
78186519 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
78186583 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
* * *
78186599 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
78186664 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
78186680 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
78186698 ATACCATTCG
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 58 0.67
81 28 0.33
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:78190489 original size:37 final size:36
Alignment explanation
Indices: 78190439--78190525 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
78190429 TACGAAGTCT
78190439 TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
*
78190475 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
78190512 TCACCCGGAACATA
1 T-ACCCGG-ACATA
78190526 TTTCCAAATT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.87
38 5 0.11
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
Found at i:78190683 original size:19 final size:19
Alignment explanation
Indices: 78190659--78190696 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
78190649 ATATACATTT
78190659 TCACATTCATCACATCGGC
1 TCACATTCATCACATCGGC
78190678 TCACATTCATCACATCGGC
1 TCACATTCATCACATCGGC
78190697 CATTAGGCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.37, G:0.11, T:0.26
Consensus pattern (19 bp):
TCACATTCATCACATCGGC
Found at i:78190690 original size:68 final size:68
Alignment explanation
Indices: 78190610--78190745 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
78190600 ATATACACTT
*
78190610 TCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATC
78190675 GGC
66 GGC
78190678 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATC
78190743 GGC
66 GGC
78190746 CATTAGGCCT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (68 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATC
GGC
Found at i:78190733 original size:49 final size:50
Alignment explanation
Indices: 78190678--78190817 Score: 246
Period size: 50 Copynumber: 2.8 Consensus size: 50
78190668 TCACATCGGC
78190678 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA-CATTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATCATTT
* * *
78190727 TCACATTCATCACATCGGCCATTAGGCCTTATCACATAAATTTATTATTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATCATTT
78190777 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
78190818 TATTATGTAC
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
49 42 0.49
50 44 0.51
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (50 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATCATTT
Found at i:78190798 original size:50 final size:50
Alignment explanation
Indices: 78190678--78190823 Score: 251
Period size: 49 Copynumber: 3.0 Consensus size: 50
78190668 TCACATCGGC
* *
78190678 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA-CATTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTTATTATTT
*
78190727 TCACATTCATCACATCGGCCATTAGGCCTTATCACATAAATTTATTATTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTTATTATTT
78190777 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-TTATTAT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTTATTAT
78190824 GTACAGACTT
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
49 49 0.53
50 43 0.47
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.36
Consensus pattern (50 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTTATTATTT
Found at i:78198772 original size:40 final size:40
Alignment explanation
Indices: 78198710--78198880 Score: 202
Period size: 40 Copynumber: 4.2 Consensus size: 40
78198700 TCTTCGGACA
* * *
78198710 TAGCCCGG-TTATAGTGATTCGCACAATTGCCTTCGGGAAT
1 TAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAAT
*
78198750 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
* * *
78198790 TAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAAT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
* * * *
78198830 T-GACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACT
1 TAG-CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGAAT
78198871 TAGCCCGGAT
1 TAGCCCGGAT
78198881 ACCATTCGAA
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
40 82 0.73
41 29 0.26
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
Found at i:78198825 original size:80 final size:81
Alignment explanation
Indices: 78198728--78198878 Score: 234
Period size: 80 Copynumber: 1.9 Consensus size: 81
78198718 TTATAGTGAT
* * *
78198728 TCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTT
1 TCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTT
78198791 AACCCGGTTTTGGTAAC
65 AACCCGGTTTTGGTAAC
*
78198808 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTTA
*
78198873 GCCCGG
66 ACCCGG
78198879 ATACCATTCG
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
80 36 0.56
81 28 0.44
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTTA
ACCCGGTTTTGGTAAC
Found at i:78200650 original size:28 final size:28
Alignment explanation
Indices: 78200585--78200685 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
78200575 ATAGTGAATC
*
78200585 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
78200614 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78200642 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
78200672 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78200686 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78210662 original size:28 final size:28
Alignment explanation
Indices: 78210597--78210697 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
78210587 ATAGTGAATC
*
78210597 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
78210626 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78210654 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
78210684 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78210698 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78218619 original size:28 final size:28
Alignment explanation
Indices: 78218554--78218654 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
78218544 ATAGTGAATC
*
78218554 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
78218583 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78218611 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
78218641 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78218655 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78222319 original size:56 final size:56
Alignment explanation
Indices: 78222228--78222341 Score: 201
Period size: 56 Copynumber: 2.0 Consensus size: 56
78222218 AAATTGGACA
*
78222228 ATCACAGGGAAAGTGAATAAATGTGAGTTTAAAATAAATTTAGTGCAATATGTATT
1 ATCACAGGGAAAGTGAATAAATGTGAATTTAAAATAAATTTAGTGCAATATGTATT
* *
78222284 ATCATAGGGAAAGTGAATAAATGTGAATTTAAAATAAATTTAGTGTAATATGTATT
1 ATCACAGGGAAAGTGAATAAATGTGAATTTAAAATAAATTTAGTGCAATATGTATT
78222340 AT
1 AT
78222342 AAAGTAAATA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.44, C:0.04, G:0.18, T:0.34
Consensus pattern (56 bp):
ATCACAGGGAAAGTGAATAAATGTGAATTTAAAATAAATTTAGTGCAATATGTATT
Found at i:78223069 original size:20 final size:20
Alignment explanation
Indices: 78223039--78223089 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
78223029 ATCCACATAT
*
78223039 AATTCATAAAAA-ATTAAAA
1 AATTAATAAAAATATTAAAA
*
78223058 ATATTAATAAAAATATTTAAA
1 A-ATTAATAAAAATATTAAAA
78223079 AATTAA-AAAAA
1 AATTAATAAAAA
78223090 GTTCATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 6 0.21
20 15 0.54
21 7 0.25
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
AATTAATAAAAATATTAAAA
Found at i:78223106 original size:30 final size:29
Alignment explanation
Indices: 78223047--78223108 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
78223037 ATAATTCATA
* *
78223047 AAAAATTAAAAATATTAATAAAAATATTT
1 AAAAATTAAAAAAATTAATAAAAACATTT
* *
78223076 AAAAATTAAAAAAAGTTCATAATAACATTT
1 AAAAATTAAAAAAA-TTAATAAAAACATTT
78223106 AAA
1 AAA
78223109 TTTTTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 13 0.46
30 15 0.54
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.31
Consensus pattern (29 bp):
AAAAATTAAAAAAATTAATAAAAACATTT
Found at i:78223382 original size:16 final size:16
Alignment explanation
Indices: 78223363--78223394 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
78223353 TATGGCAACA
78223363 GCTTTCATAGTTACTC
1 GCTTTCATAGTTACTC
78223379 GCTTTCATAGTTACTC
1 GCTTTCATAGTTACTC
78223395 ACGGATTGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44
Consensus pattern (16 bp):
GCTTTCATAGTTACTC
Found at i:78227371 original size:46 final size:46
Alignment explanation
Indices: 78227314--78227414 Score: 193
Period size: 46 Copynumber: 2.2 Consensus size: 46
78227304 TATTTGTTTT
*
78227314 CATTGATTATACATAATTAACCAACCATTTAAACACAATATGCGAG
1 CATTCATTATACATAATTAACCAACCATTTAAACACAATATGCGAG
78227360 CATTCATTATACATAATTAACCAACCATTTAAACACAATATGCGAG
1 CATTCATTATACATAATTAACCAACCATTTAAACACAATATGCGAG
78227406 CATTCATTA
1 CATTCATTA
78227415 CCATTACAGA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.30
Consensus pattern (46 bp):
CATTCATTATACATAATTAACCAACCATTTAAACACAATATGCGAG
Found at i:78228460 original size:42 final size:42
Alignment explanation
Indices: 78228395--78228527 Score: 155
Period size: 42 Copynumber: 3.2 Consensus size: 42
78228385 ACATAAAATT
* * *
78228395 TGCTAGGC-ATAAAG-CCTAGTATAATACGCTGGCACAGAA-CC
1 TGCTAGGCAATAAAGCCCGA-TATAATACACCGGCACA-AAGCC
*
78228436 TGCTAGGCAATAAAGCCCGATATAATACACCGGCATAAAGCC
1 TGCTAGGCAATAAAGCCCGATATAATACACCGGCACAAAGCC
* * * *
78228478 TGCTAGGCAATAAAGCCTGATTTAATACACCAGCACAAAGCT
1 TGCTAGGCAATAAAGCCCGATATAATACACCGGCACAAAGCC
78228520 TGCTAGGC
1 TGCTAGGC
78228528 TCAAAGCCCG
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
41 10 0.12
42 67 0.84
43 3 0.04
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (42 bp):
TGCTAGGCAATAAAGCCCGATATAATACACCGGCACAAAGCC
Found at i:78236705 original size:99 final size:99
Alignment explanation
Indices: 78236471--78236665 Score: 381
Period size: 99 Copynumber: 2.0 Consensus size: 99
78236461 ATTGGTTAAC
78236471 CCAATATGATGCAGTGGTGAACTGTAAATAGAAATATATTGTATTGAAATGTAAGAATGGTGAAT
1 CCAATATGATGCAGTGGTGAACTGTAAATAGAAATATATTGTATTGAAATGTAAGAATGGTGAAT
78236536 TACTTCATGTTGAATCTAAAAAACTAGATGGTAA
66 TACTTCATGTTGAATCTAAAAAACTAGATGGTAA
*
78236570 CCAATATGATGCAGTGGTGAACTGTAAATAGAAATATATTGTATTGAAATGTGAGAATGGTGAAT
1 CCAATATGATGCAGTGGTGAACTGTAAATAGAAATATATTGTATTGAAATGTAAGAATGGTGAAT
78236635 TACTTCATGTTGAATCTAAAAAACTAGATGG
66 TACTTCATGTTGAATCTAAAAAACTAGATGG
78236666 ATTACCTAAT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 95 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.31
Consensus pattern (99 bp):
CCAATATGATGCAGTGGTGAACTGTAAATAGAAATATATTGTATTGAAATGTAAGAATGGTGAAT
TACTTCATGTTGAATCTAAAAAACTAGATGGTAA
Found at i:78239177 original size:40 final size:40
Alignment explanation
Indices: 78239124--78239319 Score: 272
Period size: 40 Copynumber: 4.9 Consensus size: 40
78239114 CCGGATAGCT
* * *
78239124 ACTCGCTCAAATGCCTTCGGAACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
78239164 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
78239204 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* *
78239244 ACTCGCACAAATGCCTTCGGAACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
78239284 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
78239320 CATCCGAATA
Statistics
Matches: 138, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
39 2 0.01
40 134 0.97
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:78239257 original size:80 final size:80
Alignment explanation
Indices: 78239124--78239315 Score: 314
Period size: 80 Copynumber: 2.4 Consensus size: 80
78239114 CCGGATAGCT
* * * * * *
78239124 ACTCGCTCAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAACTT
78239189 AGCCCGGATTTGGTA
66 AGCCCGGATTTGGTA
78239204 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGAACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGAACT
78239268 TAGCCCGGATTTGGTA
65 TAGCCCGGATTTGGTA
78239284 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
78239316 TTATCATCCG
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
79 1 0.01
80 104 0.99
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAACTT
AGCCCGGATTTGGTA
Found at i:78242919 original size:41 final size:41
Alignment explanation
Indices: 78242818--78242933 Score: 110
Period size: 43 Copynumber: 2.8 Consensus size: 41
78242808 ATCTATTATA
* *
78242818 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCAATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCAATT-AGATT
* * *
78242860 TACATATAAGACCATGTCTGGGACATCA-GCATCGATCT-GATT
1 T-CGTGTAAGACCATGTCTGGGACA-CAGGCATCAAT-TAGATT
* * *
78242902 TCGTGTAAGACCCTGTCTGGGATAGAGGCATC
1 TCGTGTAAGACCATGTCTGGGACACAGGCATC
78242934 GATATTGAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
40 1 0.02
41 24 0.40
42 6 0.10
43 26 0.43
44 3 0.05
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCAATTAGATT
Found at i:78258635 original size:34 final size:33
Alignment explanation
Indices: 78258587--78258650 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
78258577 GTGTTTGTAT
*
78258587 ACTGTACTGAAATGGGCTAAGGCCCAGACTACC
1 ACTGTACTGAAATGGGCTAACGCCCAGACTACC
* *
78258620 ACTGATACTGTAATGGGCTCACGCCCAGACT
1 ACTG-TACTGAAATGGGCTAACGCCCAGACT
78258651 GTTACTGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (33 bp):
ACTGTACTGAAATGGGCTAACGCCCAGACTACC
Found at i:78261127 original size:23 final size:23
Alignment explanation
Indices: 78261097--78261142 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
78261087 ACGTATTACA
78261097 ATTGATTTTGTATCAAGATTGCC
1 ATTGATTTTGTATCAAGATTGCC
78261120 ATTGATTTTGTATCAAGATTGCC
1 ATTGATTTTGTATCAAGATTGCC
78261143 TCTATCTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.43
Consensus pattern (23 bp):
ATTGATTTTGTATCAAGATTGCC
Found at i:78263545 original size:31 final size:31
Alignment explanation
Indices: 78263504--78263567 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
78263494 CCTTTTCATA
* *
78263504 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
78263535 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
78263566 TT
1 TT
78263568 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:78263802 original size:25 final size:23
Alignment explanation
Indices: 78263759--78263952 Score: 219
Period size: 25 Copynumber: 8.0 Consensus size: 23
78263749 TGCTTTATCA
*
78263759 TATAACTGGAGGC-TTAGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
78263783 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
78263808 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
78263831 ATCACAACTGGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT--T
*
78263858 CATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
78263881 ATCATAACTGGGGCATTAGCCCTTT
1 -T-ATAACTGGGGCATAAGCCCTTT
*
78263906 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
* *
78263929 AATAACTAGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
78263952 T
1 T
78263953 GCACTTCCTT
Statistics
Matches: 149, Mismatches: 12, Indels: 19
0.83 0.07 0.11
Matches are distributed among these distances:
23 47 0.32
24 24 0.16
25 77 0.52
27 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:78264026 original size:20 final size:20
Alignment explanation
Indices: 78263998--78264081 Score: 150
Period size: 20 Copynumber: 4.2 Consensus size: 20
78263988 GCATTTATGA
*
78263998 ACATCTCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
78264018 ACATGTCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
*
78264038 ACATATCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
78264058 ACATGTCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
78264078 ACAT
1 ACAT
78264082 ACCATGTTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATGTCATGTGCATATCAT
Found at i:78264053 original size:11 final size:11
Alignment explanation
Indices: 78264003--78264077 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
78263993 TATGAACATC
78264003 TCATGTGCATA
1 TCATGTGCATA
* *
78264014 TCA--TACATG
1 TCATGTGCATA
78264023 TCATGTGCATA
1 TCATGTGCATA
*
78264034 TCA--TACATA
1 TCATGTGCATA
78264043 TCATGTGCATA
1 TCATGTGCATA
* *
78264054 TCA--TACATG
1 TCATGTGCATA
78264063 TCATGTGCATA
1 TCATGTGCATA
78264074 TCAT
1 TCAT
78264078 ACATACCATG
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:78264153 original size:25 final size:25
Alignment explanation
Indices: 78264125--78264172 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
78264115 ATGTATAAAC
* *
78264125 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
78264150 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
78264173 ATATTATAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:78265394 original size:27 final size:27
Alignment explanation
Indices: 78265332--78265419 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
78265322 GGGCATATTC
*
78265332 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACCTTACAGGGGTATTACA
* *
78265359 GTCACTTTACCTTACAGGGGCT-TTACG
1 GTCATTTTACCTTACAGGGG-TATTACA
* * * **
78265386 GTCTTTTTACCTAATAGGGGTATTTTA
1 GTCATTTTACCTTACAGGGGTATTACA
78265413 GTCATTT
1 GTCATTT
78265420 CATCCTACAA
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
26 1 0.02
27 46 0.96
28 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCTTACAGGGGTATTACA
Found at i:78265480 original size:27 final size:27
Alignment explanation
Indices: 78265450--78265557 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
78265440 GTAAATCTAC
78265450 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
78265477 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
78265503 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
78265533 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
78265558 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.02
27 40 0.61
28 7 0.11
29 17 0.26
30 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:78265563 original size:27 final size:27
Alignment explanation
Indices: 78265533--78265679 Score: 138
Period size: 27 Copynumber: 5.4 Consensus size: 27
78265523 GTAACTTTGT
78265533 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * * *
78265560 AAAT-TGAGGGCATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* * *
78265587 AAACCAAGGGTATTTTGATAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
78265614 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* * **
78265641 AAAT-TGAGGGTATTTTTGTAATTTTTT
1 AAATCAG-GGGTATTTTGGTAATTTTAC
*
78265668 AAATCAAGGGTA
1 AAATCAGGGGTA
78265680 AAATAGTAAT
Statistics
Matches: 95, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
26 3 0.03
27 92 0.97
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:78265676 original size:81 final size:81
Alignment explanation
Indices: 78265485--78265679 Score: 234
Period size: 81 Copynumber: 2.4 Consensus size: 81
78265475 GTAAACCAAT
* * *
78265485 GGTATTTCTATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTG
1 GGTATTTCTGTAATTTTT-CAAA-TCAAGGGTATTTCTGTAACTTTGTAAAACAGGGGTATTTTG
78265550 GTAATTTTACAAATTGAG
64 GTAATTTTACAAATTGAG
* * ** *
78265568 GGCATTTCGGTAATTTCACAAACCAAGGGTATTT-TGATAA-TTT-TACAAACTAGGGGTATTTT
1 GGTATTTCTGTAATTTTTCAAATCAAGGGTATTTCTG-TAACTTTGTA-AAAC-AGGGGTATTTT
78265630 GGTAATTTTACAAATTGAG
63 GGTAATTTTACAAATTGAG
* *
78265649 GGTATTTTTGTAATTTTTTAAATCAAGGGTA
1 GGTATTTCTGTAATTTTTCAAATCAAGGGTA
78265680 AAATAGTAAT
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
79 2 0.02
80 8 0.09
81 68 0.72
82 3 0.03
83 13 0.14
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
GGTATTTCTGTAATTTTTCAAATCAAGGGTATTTCTGTAACTTTGTAAAACAGGGGTATTTTGGT
AATTTTACAAATTGAG
Found at i:78265679 original size:54 final size:54
Alignment explanation
Indices: 78265427--78265679 Score: 170
Period size: 54 Copynumber: 4.6 Consensus size: 54
78265417 TTTCATCCTA
* * * * * * ***
78265427 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAAAC
* * * * * ** *
78265481 CAATGGTATTTCTATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTT-GTAAAT
1 CAAGGGTATTTTTGTAA-TTTTACAAA-TCAAGGGTATTTCGGTAA-TTTCACAAAC
* * ** *
78265537 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGCATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAAAC
* * * *
78265591 CAAGGGTA-TTTTGATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTTG-TAATTTTACAAATC-AAGGGTATTTCGGTAATTTCACAAAC
** **
78265645 TGAGGGTATTTTTGTAATTTTTTAAATCAAGGGTA
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTA
78265680 AAATAGTAAT
Statistics
Matches: 153, Mismatches: 38, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
53 7 0.05
54 90 0.59
55 20 0.13
56 33 0.22
57 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAAAC
Found at i:78265688 original size:27 final size:27
Alignment explanation
Indices: 78265658--78265925 Score: 160
Period size: 27 Copynumber: 9.5 Consensus size: 27
78265648 GGGTATTTTT
* * *
78265658 GTAATTTTTTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
*
78265685 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * *
78265712 GTAATTCTATAAATCGACGGTAAAA-C
1 GTAATTCTGTAAATCGAGGGTAAAATA
* **
78265738 GATAATTTTGTAAATCGAGGGTAAAACG
1 G-TAATTCTGTAAATCGAGGGTAAAATA
*
78265766 GTAATTCTGTAAGTCGAGGGTAAAACGGGGGTAAAA
1 GTAATTCTGTAAATCGAGGGTAAAA------T---A
* * * *
78265802 TGGTAATTATGTAAATTGGGGGTAAAATG
1 --GTAATTCTGTAAATCGAGGGTAAAATA
* * *
78265831 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* ** **
78265858 GTAATTCTATAAATTAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * * **
78265885 GTACTTCTATAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATA
*
78265912 GTAATTATGTAAAT
1 GTAATTCTGTAAAT
78265926 TGGGGGTACT
Statistics
Matches: 192, Mismatches: 36, Indels: 26
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 168 0.88
28 1 0.01
32 1 0.01
38 21 0.11
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATA
Found at i:78265706 original size:81 final size:80
Alignment explanation
Indices: 78265528--78265706 Score: 200
Period size: 81 Copynumber: 2.2 Consensus size: 80
78265518 TTTCTGTAAC
78265528 TTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGCATTTCGGTAATTTCACAAACCA
1 TTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGCATTTCGGTAATTTCACAAACCA
** *
78265593 AGGGTATTTTGATAA
66 AGGGTAAATAGATAA
* * ** *** *
78265608 TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTTTAAAT
1 TTTGTA-AATC-AGGGGTATTTTGGTAATTTTACAAATTGAGGGCATTTCGGTAATTTCACAAAC
78265672 CAAGGGTAAAATAG-TAA
64 CAAGGGT-AAATAGATAA
*
78265689 TTCTGTAAATCAAGGGTA
1 TT-TGTAAATCAGGGGTA
78265707 AAATAGTAAT
Statistics
Matches: 81, Mismatches: 13, Indels: 9
0.79 0.13 0.09
Matches are distributed among these distances:
79 2 0.02
80 6 0.07
81 64 0.79
82 7 0.09
83 2 0.02
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (80 bp):
TTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGCATTTCGGTAATTTCACAAACCA
AGGGTAAATAGATAA
Found at i:78265716 original size:81 final size:81
Alignment explanation
Indices: 78265659--78265925 Score: 212
Period size: 81 Copynumber: 3.2 Consensus size: 81
78265649 GGTATTTTTG
* * *
78265659 TAATTTTTTAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAA
1 TAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTACAA
78265724 ATCGACGGTAAAACGA
66 ATCGACGGTAAAACGA
* * * *
78265740 TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGGGGGTAAAATGG
1 TAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAA----A---T-CAA---GGGTAAAATAG
* ** * ** * *
78265805 TAATTATGTAAATTGGGGGTAAAATGG
55 TAATTCTACAAATCGACGGTAAAACGA
* * ** * *
78265832 TAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATTAAGGGTAAAACGGTACTTCTATAA
1 TAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTACAA
*
78265897 ATCGA-GGATAAAACGG
66 ATCGACGG-TAAAACGA
*
78265913 TAATTATGTAAAT
1 TAATTTTGTAAAT
78265926 TGGGGGTACT
Statistics
Matches: 149, Mismatches: 25, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
80 2 0.01
81 74 0.50
84 2 0.01
85 2 0.01
88 2 0.01
89 2 0.01
92 65 0.44
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (81 bp):
TAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTACAA
ATCGACGGTAAAACGA
Found at i:78265808 original size:92 final size:92
Alignment explanation
Indices: 78265702--78265885 Score: 242
Period size: 92 Copynumber: 2.0 Consensus size: 92
78265692 TGTAAATCAA
* * *
78265702 GGGTAAAATAGTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGG
1 GGGTAAAATAGTAATTATATAAATCGACGGTAAAACGATAATTTTGTAAATCAAGGGTAAAACAG
* * *
78265767 TAATTCTGTAAGTCGAGGGTAAAACGG
66 TAATTCTATAAATCAAGGGTAAAACGG
* * * ** * *
78265794 GGGTAAAATGGTAATTATGTAAATTGGGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAACAG
1 GGGTAAAATAGTAATTATATAAATCGACGGTAAAACGATAATTTTGTAAATCAAGGGTAAAACAG
*
78265859 TAATTCTATAAATTAAGGGTAAAACGG
66 TAATTCTATAAATCAAGGGTAAAACGG
78265886 TACTTCTATA
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
92 78 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (92 bp):
GGGTAAAATAGTAATTATATAAATCGACGGTAAAACGATAATTTTGTAAATCAAGGGTAAAACAG
TAATTCTATAAATCAAGGGTAAAACGG
Found at i:78265809 original size:65 final size:65
Alignment explanation
Indices: 78265730--78265856 Score: 173
Period size: 65 Copynumber: 2.0 Consensus size: 65
78265720 ATAAATCGAC
* * *
78265730 GGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGGG
1 GGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGGG
* * * * * *
78265795 GGTAAAATGGTAATTATGTAAATTGGGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAAC
1 GGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAC
78265857 AGTAATTCTA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
65 53 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.28
Consensus pattern (65 bp):
GGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGGG
Found at i:78265825 original size:38 final size:38
Alignment explanation
Indices: 78265747--78265828 Score: 101
Period size: 38 Copynumber: 2.2 Consensus size: 38
78265737 CGATAATTTT
* * *
78265747 GTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGG
1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGAGG
* * * *
78265785 GTAAAACGGGGGTAAAATGGTAATTATGTAAATTGGGG
1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGAGG
78265823 GTAAAA
1 GTAAAA
78265829 TGGTAATTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.38, C:0.06, G:0.32, T:0.24
Consensus pattern (38 bp):
GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGAGG
Found at i:78265886 original size:119 final size:119
Alignment explanation
Indices: 78265675--78265912 Score: 298
Period size: 119 Copynumber: 2.0 Consensus size: 119
78265665 TTTAAATCAA
* *
78265675 GGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGACGGTAAAACGA
1 GGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAACGGTAAAACGA
* * * * * *
78265740 TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGG
66 TAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGATAAAACGG
* *** * * * *
78265794 GGGTAAAATGGTAATTATGTAAATTGGGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAAC-A
1 GGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAACGGTAAAACGA
* *
78265858 GTAATTCTATAAATTAAGGGTAAAACGGTACTTCTATAAATCGAGGATAAAACGG
66 -TAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGATAAAACGG
78265913 TAATTATGTA
Statistics
Matches: 100, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
118 1 0.01
119 99 0.99
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.28
Consensus pattern (119 bp):
GGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAACGGTAAAACGA
TAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGATAAAACGG
Found at i:78265956 original size:54 final size:54
Alignment explanation
Indices: 78265797--78265957 Score: 169
Period size: 54 Copynumber: 3.0 Consensus size: 54
78265787 AAAACGGGGG
* * * *
78265797 TAAAATGGTAATTATGTAAATTGGGGGTAAAATGGTAATTTTGTAAATCAAGGG
1 TAAAACGGTAATTATGTAAATTGGGGGTAAAATGGTAATTTTATAAATCGAGGA
* * * ** * * *
78265851 TAAAACAGTAATTCTATAAATTAAGGGTAAAACGGTACTTCTATAAATCGAGGA
1 TAAAACGGTAATTATGTAAATTGGGGGTAAAATGGTAATTTTATAAATCGAGGA
*** * *
78265905 TAAAACGGTAATTATGTAAATTGGGGGTACTTTGGTAATTTTACAAGTCGAGG
1 TAAAACGGTAATTATGTAAATTGGGGGTAAAATGGTAATTTTATAAATCGAGG
78265958 GTATTTCAAT
Statistics
Matches: 82, Mismatches: 25, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (54 bp):
TAAAACGGTAATTATGTAAATTGGGGGTAAAATGGTAATTTTATAAATCGAGGA
Found at i:78267963 original size:40 final size:40
Alignment explanation
Indices: 78267908--78268157 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
78267898 AACATTGGAA
78267908 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78267948 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78267988 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78268028 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
78268068 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
78268107 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
78268148 CTATATCCGG
1 ATATATCCGG
78268158 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:78276066 original size:40 final size:40
Alignment explanation
Indices: 78276011--78276180 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
78276001 AACATTGGAA
78276011 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78276051 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
78276091 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
78276130 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
78276171 CTATATCCGG
1 ATATATCCGG
78276181 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:78279734 original size:40 final size:40
Alignment explanation
Indices: 78279679--78279928 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
78279669 AACATTGGAA
78279679 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78279719 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78279759 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78279799 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
78279839 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
78279878 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
78279919 CTATATCCGG
1 ATATATCCGG
78279929 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:78287835 original size:40 final size:40
Alignment explanation
Indices: 78287780--78287949 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
78287770 AACATTGGAA
78287780 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78287820 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
78287860 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
78287899 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
78287940 CTATATCCGG
1 ATATATCCGG
78287950 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:78291643 original size:15 final size:16
Alignment explanation
Indices: 78291622--78291679 Score: 61
Period size: 15 Copynumber: 3.8 Consensus size: 16
78291612 CTGTGACTTT
78291622 GCCGTGTGTGACACAC
1 GCCGTGTGTGACACAC
* *
78291638 G-GGTGTGTGACTCA-
1 GCCGTGTGTGACACAC
78291652 GCCGTGTGTGACACAC
1 GCCGTGTGTGACACAC
78291668 AGCC-TG-GTGACA
1 -GCCGTGTGTGACA
78291680 TGGTTGTCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
14 1 0.03
15 28 0.80
16 3 0.09
17 3 0.09
ACGTcount: A:0.19, C:0.26, G:0.34, T:0.21
Consensus pattern (16 bp):
GCCGTGTGTGACACAC
Found at i:78291678 original size:30 final size:30
Alignment explanation
Indices: 78291613--78291678 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
78291603 GACATGGGCC
** **
78291613 TGTGACTTTGCCGTGTGTGACACACGGGTG
1 TGTGACTCAGCCGTGTGTGACACACGCCTG
78291643 TGTGACTCAGCCGTGTGTGACACACAGCCTG
1 TGTGACTCAGCCGTGTGTGACACAC-GCCTG
78291674 -GTGAC
1 TGTGAC
78291679 ATGGTTGTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.17, C:0.24, G:0.33, T:0.26
Consensus pattern (30 bp):
TGTGACTCAGCCGTGTGTGACACACGCCTG
Found at i:78293700 original size:14 final size:15
Alignment explanation
Indices: 78293681--78293709 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
78293671 TTCACCTTAA
78293681 ATTCATAAA-AAAGG
1 ATTCATAAATAAAGG
78293695 ATTCATAAATAAAGG
1 ATTCATAAATAAAGG
78293710 CAATATCCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.55, C:0.07, G:0.14, T:0.24
Consensus pattern (15 bp):
ATTCATAAATAAAGG
Done.