Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 253 of 433
Found at i:78946408 original size:7 final size:7
Alignment explanation
Indices: 78946396--78946450 Score: 56
Period size: 7 Copynumber: 7.4 Consensus size: 7
78946386 ATTTTTATTT
78946396 ATTTAAA
1 ATTTAAA
78946403 ATTTAAA
1 ATTTAAA
78946410 ATTTAAA
1 ATTTAAA
78946417 ATTTATATA
1 ATTTA-A-A
**
78946426 ATTTTTA
1 ATTTAAA
*
78946433 ATTTAAT
1 ATTTAAA
78946440 ATTTAATA
1 ATTTAA-A
78946448 ATT
1 ATT
78946451 ATATATATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
7 30 0.77
8 4 0.10
9 5 0.13
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
ATTTAAA
Found at i:78946436 original size:30 final size:30
Alignment explanation
Indices: 78946402--78946487 Score: 101
Period size: 30 Copynumber: 2.9 Consensus size: 30
78946392 ATTTATTTAA
78946402 AATTTAAAATTTAAAATTTATATA-ATTTTT
1 AATTT-AAATTTAAAATTTATATATATTTTT
78946432 AATTTAATATTTAATAA-TTATATATATTTTT
1 AATTTAA-ATTTAA-AATTTATATATATTTTT
78946463 -ATTT--ATTTAAAATTTTATATATATT
1 AATTTAAATTTAAAA-TTTATATATATT
78946488 CATCTTAAGC
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
26 2 0.04
27 6 0.12
28 11 0.22
29 2 0.04
30 22 0.43
31 8 0.16
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (30 bp):
AATTTAAATTTAAAATTTATATATATTTTT
Found at i:78953280 original size:46 final size:46
Alignment explanation
Indices: 78953230--78953355 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
78953220 TGGTTGAGCA
*
78953230 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
78953276 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
78953322 CCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78953356 GGGGCGGGTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:78958280 original size:40 final size:40
Alignment explanation
Indices: 78958221--78958369 Score: 172
Period size: 40 Copynumber: 3.7 Consensus size: 40
78958211 TATAACCACA
* * * * **
78958221 AGCACAATTGCCTTTGGGTCTTAACCCGGATTTGGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACT
* * *
78958261 TGCACAAATGCCTTCGGGTCTTAGCCTGGATATAACAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACT
* * *
78958301 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACT
* *
78958341 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
78958370 GTATCATTCA
Statistics
Matches: 91, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACT
Found at i:78958329 original size:80 final size:80
Alignment explanation
Indices: 78958193--78958366 Score: 199
Period size: 80 Copynumber: 2.2 Consensus size: 80
78958183 AACCGAGTTT
* * * * * **
78958193 CTTCGGAATTTAG-CTGGATATAACCACAAGCACAATTGCCTTTGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCTGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
*
78958257 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* ** *
78958272 CTTCGGGTCTTAGCCTGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCTGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAA
* *
78958336 TCACTAGCATAAATGC
65 TAACTAGCACAAATGC
78958352 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
78958367 CGGGTATCAT
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 10 0.13
80 66 0.85
81 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCTGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:78966486 original size:40 final size:40
Alignment explanation
Indices: 78966378--78966543 Score: 178
Period size: 39 Copynumber: 4.2 Consensus size: 40
78966368 TCTTCGGAAT
* * *
78966378 TTAG-CCGGATATAACCACAAGCACAATTGCCTTC-GGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
78966416 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
78966456 TTAGCCCGGATATAACAACTCGCACGAATGCCTT-GGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
78966495 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
78966535 TTAGCCCGG
1 TTAGCCCGG
78966544 GTATCATTCA
Statistics
Matches: 104, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
38 3 0.03
39 56 0.54
40 45 0.43
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:78966503 original size:79 final size:79
Alignment explanation
Indices: 78966369--78966543 Score: 201
Period size: 79 Copynumber: 2.2 Consensus size: 79
78966359 AACCGAGTTT
* * * * **
78966369 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGTCTTAACCCGGATTTGGTA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGTCTTAACCCGGATATAATA
*
78966433 ACTTGCACAAATGC
66 ACTAGCACAAATGC
* ** * *
78966447 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGTCTTAACCCGGATATAAT
* *
78966511 CACTAGCATAAATGC
65 AACTAGCACAAATGC
78966526 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
78966544 GTATCATTCA
Statistics
Matches: 80, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
78 10 0.12
79 68 0.85
80 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGTCTTAACCCGGATATAATA
ACTAGCACAAATGC
Found at i:78969701 original size:15 final size:15
Alignment explanation
Indices: 78969681--78969710 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
78969671 AATAAAATGA
78969681 TAGAATTCATCATTG
1 TAGAATTCATCATTG
78969696 TAGAATTCATCATTG
1 TAGAATTCATCATTG
78969711 GGTTTATCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (15 bp):
TAGAATTCATCATTG
Found at i:78978983 original size:42 final size:42
Alignment explanation
Indices: 78978865--78978984 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 42
78978855 CACACATTAC
* * * * *
78978865 CATATCAATGCCATATCTCAGATATAGTCTTACATGTAATCT
1 CATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCT
* * *
78978907 CATATCGATGCCAATAGCCCAGCTATGTTCTTACACGAAATCT
1 CATATCGATGCC-ATATCCCAGATATGGTCTTACACGAAATCT
*
78978950 CATATCGATGCCATATCCCAGATGTGGTCTTACAC
1 CATATCGATGCCATATCCCAGATATGGTCTTACAC
78978985 ATAATCTTGG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 30 0.46
43 35 0.54
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (42 bp):
CATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCT
Found at i:78978991 original size:42 final size:42
Alignment explanation
Indices: 78978865--78978991 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 42
78978855 CACACATTAC
* * * **
78978865 CATATCAATGCCATATCTCAGATATAGTCTTACATGTAATCT
1 CATATCGATGCCATATCCCAGATATGGTCTTACACATAATCT
* * *
78978907 CATATCGATGCCAATAGCCCAGCTATGTTCTTACACGA-AATCT
1 CATATCGATGCC-ATATCCCAGATATGGTCTTACAC-ATAATCT
*
78978950 CATATCGATGCCATATCCCAGATGTGGTCTTACACATAATCT
1 CATATCGATGCCATATCCCAGATATGGTCTTACACATAATCT
78978992 TGGTAACCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 35 0.50
43 34 0.49
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (42 bp):
CATATCGATGCCATATCCCAGATATGGTCTTACACATAATCT
Found at i:78989547 original size:2 final size:2
Alignment explanation
Indices: 78989540--78989581 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
78989530 TATAATTGTG
78989540 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78989582 GAGATGATCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79000072 original size:19 final size:20
Alignment explanation
Indices: 79000048--79000085 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
79000038 TAGTCTTAAA
*
79000048 ATAAAATAA-AAGTAAAAAC
1 ATAAAATAATAAATAAAAAC
79000067 ATAAAATAATAAATAAAAA
1 ATAAAATAATAAATAAAAA
79000086 ATTTTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (20 bp):
ATAAAATAATAAATAAAAAC
Found at i:79009323 original size:47 final size:47
Alignment explanation
Indices: 79009267--79009411 Score: 211
Period size: 47 Copynumber: 3.1 Consensus size: 47
79009257 TAAGTTGGAT
79009267 TTAAGCTTGTTAAATTTGTTCTTAATAATTTCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTTCGGATAAGTTACTTAG
* *
79009314 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGAATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTTCGGATAAGTTACTTAG
* ** * *
79009361 TTAAGTTTGTTAAATTTGCCCTTAAT-ATTTCCAGTTAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTT-CGGATAAGTTACTTAG
79009408 TTAA
1 TTAA
79009412 AGAAAATTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 3 0.03
47 85 0.97
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.46
Consensus pattern (47 bp):
TTAAGCTTGTTAAATTTGTTCTTAATAATTTCGGATAAGTTACTTAG
Found at i:79010254 original size:45 final size:45
Alignment explanation
Indices: 79010190--79010367 Score: 284
Period size: 45 Copynumber: 4.0 Consensus size: 45
79010180 TATTGTACAG
* * *
79010190 TACTATTTGGGCCTTTGAGCTTAGCAGGCTATAAGGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
79010235 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
79010280 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
79010325 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCTGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
79010368 ATGAATTCGG
Statistics
Matches: 122, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 122 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:79010391 original size:43 final size:44
Alignment explanation
Indices: 79010211--79010397 Score: 198
Period size: 45 Copynumber: 4.2 Consensus size: 44
79010201 CCTTTGAGCT
* * * *
79010211 TAGCAGGCTATAAGGCCGGTGAGATACTATTCAGGCCTTTGAGCC
1 TAGCAGGCTATAATGCCGGTGAGATAC-ATTCGGGCCTTTAAACC
* * * *
79010256 TAGCAGGCTATAATGCCGATGAGATACTATTTGGGCCTTTGAGCC
1 TAGCAGGCTATAATGCCGGTGAGATAC-ATTCGGGCCTTTAAACC
* *
79010301 TAGCAGGCTATAATGCCGGTGAGATACTATTCGGGCCTTTGAGCC
1 TAGCAGGCTATAATGCCGGTGAGATAC-ATTCGGGCCTTTAAACC
* * **
79010346 TAGTAGGCTATAATGCTGGTGA-ATGA-ATTCGGGTTTTTAAACC
1 TAGCAGGCTATAATGCCGGTGAGAT-ACATTCGGGCCTTTAAACC
79010389 TAGCAGGCT
1 TAGCAGGCT
79010398 GAATACCGAT
Statistics
Matches: 128, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 21 0.16
44 2 0.02
45 105 0.82
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (44 bp):
TAGCAGGCTATAATGCCGGTGAGATACATTCGGGCCTTTAAACC
Found at i:79010929 original size:16 final size:18
Alignment explanation
Indices: 79010898--79010930 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
79010888 AACTCGTCAC
79010898 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
79010916 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
79010931 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:79012092 original size:17 final size:18
Alignment explanation
Indices: 79012070--79012104 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
79012060 CTTGTTGAAC
79012070 GAGCTT-GTAAAGAGAAA
1 GAGCTTAGTAAAGAGAAA
79012087 GAGCTTAGTAAAGAGAAA
1 GAGCTTAGTAAAGAGAAA
79012105 AGAAAAGCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.49, C:0.06, G:0.29, T:0.17
Consensus pattern (18 bp):
GAGCTTAGTAAAGAGAAA
Found at i:79016835 original size:28 final size:28
Alignment explanation
Indices: 79016803--79016857 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
79016793 TAAGTTGGAT
**
79016803 TTAAGCTTGTTAAATTTGTTCTTAATAA
1 TTAAGCTTGTTAAATTTGCCCTTAATAA
*
79016831 TTAAGTTTGTTAAATTTGCCCTTAATA
1 TTAAGCTTGTTAAATTTGCCCTTAATA
79016858 TTTCTGGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (28 bp):
TTAAGCTTGTTAAATTTGCCCTTAATAA
Found at i:79020569 original size:40 final size:40
Alignment explanation
Indices: 79020442--79020571 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
79020432 ATGCTGGAAA
* * *
79020442 TTATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGG-CATTCGTGCGAGTGG
* * *
79020482 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
79020522 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
79020562 TTATATCCGG
1 TTATATCCGG
79020572 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 5 0.06
40 72 0.94
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:79031726 original size:24 final size:23
Alignment explanation
Indices: 79031694--79031802 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
79031684 ACCAAACGTT
* **
79031694 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
79031718 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
79031742 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
79031766 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
79031790 GCACACATAGTGC
1 GCACACATAGTGC
79031803 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:79031768 original size:48 final size:48
Alignment explanation
Indices: 79031694--79031802 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
79031684 ACCAAACGTT
* **
79031694 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
79031742 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
79031790 GCACACATAGTGC
1 GCACACATAGTGC
79031803 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:79033608 original size:45 final size:45
Alignment explanation
Indices: 79033544--79033721 Score: 320
Period size: 45 Copynumber: 4.0 Consensus size: 45
79033534 TATTGTACAG
* *
79033544 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAAGGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
79033589 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
79033634 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
79033679 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
79033722 ATGAATTCGG
Statistics
Matches: 128, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 128 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:79035813 original size:29 final size:29
Alignment explanation
Indices: 79035780--79035997 Score: 287
Period size: 29 Copynumber: 7.5 Consensus size: 29
79035770 GTGACGAGAT
79035780 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
79035809 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
79035838 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
79035867 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
79035896 TGGTACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
79035925 CGGCACTGGGTGTGCCA-GCTCGAAGGGTA
1 TGGCACTAAGTGTG-CATGCTGGAAATATA
* ** * *
79035954 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
79035983 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
79035998 GAAATCGAGT
Statistics
Matches: 167, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
28 3 0.02
29 162 0.97
30 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:79037629 original size:16 final size:18
Alignment explanation
Indices: 79037597--79037630 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
79037587 CAACTCGTCA
79037597 CACTATCTATCATTTTGG
1 CACTATCTATCATTTTGG
79037615 CACTA-CTAT-ATTTTGG
1 CACTATCTATCATTTTGG
79037631 AGCTAGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.44
Consensus pattern (18 bp):
CACTATCTATCATTTTGG
Found at i:79052177 original size:40 final size:39
Alignment explanation
Indices: 79052017--79052211 Score: 273
Period size: 39 Copynumber: 4.9 Consensus size: 39
79052007 TGTGTATGAA
*
79052017 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
79052056 TGTGCGAGTTGTGATATCCGGGCTAAGCTCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
79052095 TGTGTGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
79052134 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* *** * *
79052174 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGCA
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
79052212 TTTGAACGAG
Statistics
Matches: 141, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.70
40 42 0.30
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:79055846 original size:2 final size:2
Alignment explanation
Indices: 79055829--79055872 Score: 70
Period size: 2 Copynumber: 21.5 Consensus size: 2
79055819 TTGTGAATTG
*
79055829 TA TA AA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79055872 T
1 T
79055873 GTGACATTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:79058887 original size:14 final size:14
Alignment explanation
Indices: 79058868--79058899 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
79058858 CATTTTCTCC
79058868 AAATTTTGAACTGA
1 AAATTTTGAACTGA
79058882 AAATTTTGAACTGA
1 AAATTTTGAACTGA
79058896 AAAT
1 AAAT
79058900 CTTGCTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.34
Consensus pattern (14 bp):
AAATTTTGAACTGA
Found at i:79062719 original size:25 final size:24
Alignment explanation
Indices: 79062691--79062760 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
79062681 GGGTAACTCC
79062691 GAAAAGCTATTATCAGGAAGCTCAT
1 GAAAAGCTATTATCAGGAAGCTC-T
* *
79062716 GAAAGAGCTTTTAATCGGGAAGCTCT
1 GAAA-AGCTATT-ATCAGGAAGCTCT
* *
79062742 GAATAGCCATATATCAGGA
1 GAAAAGCTAT-TATCAGGA
79062761 TGTTCATAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
25 14 0.39
26 11 0.31
27 11 0.31
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (24 bp):
GAAAAGCTATTATCAGGAAGCTCT
Found at i:79064223 original size:39 final size:40
Alignment explanation
Indices: 79064142--79064293 Score: 191
Period size: 39 Copynumber: 3.8 Consensus size: 40
79064132 GGATATAGCG
* *
79064142 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTTTGGTA
1 ACTCGCACAAAAGCCTTCGGGACTTAGCCCGGTTTTGGTA
*
79064182 ACTCGCACAAATGCCTTCGGGACTTA-CCCGGTTTTGGTA
1 ACTCGCACAAAAGCCTTCGGGACTTAGCCCGGTTTTGGTA
* * * * *
79064221 ACTCGCACAAATGCCTTCGGGAATT-GACCCGGATTTAGTC
1 ACTCGCACAAAAGCCTTCGGGACTTAG-CCCGGTTTTGGTA
*
79064261 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAAAGCCTTCGGGACTTAGCCCGG
79064294 ATACCATTCG
Statistics
Matches: 98, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
39 37 0.38
40 35 0.36
41 25 0.26
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAAAGCCTTCGGGACTTAGCCCGGTTTTGGTA
Found at i:79069846 original size:78 final size:82
Alignment explanation
Indices: 79069737--79069920 Score: 236
Period size: 78 Copynumber: 2.3 Consensus size: 82
79069727 ACTCGTTCAA
*
79069737 AAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 AAATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
79069800 GATTTAGTAAC-TCGCAC
65 GATATAGTAACTTAGCAC
* **
79069817 CAATGCCTTCGGG-C-TAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 AAATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
79069879 ATATAGTCACTTAGCAC
66 ATATAGTAACTTAGCAC
* *
79069896 AAAAGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACATAGCCCGGA
79069921 TATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 3 0.03
78 47 0.52
79 18 0.20
80 13 0.14
81 9 0.10
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (82 bp):
AAATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCAC
Found at i:79069847 original size:38 final size:40
Alignment explanation
Indices: 79069737--79069921 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
79069727 ACTCGTTCAA
79069737 AAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 AAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCGCAC
* *
79069777 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 AAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCAC
* *
79069817 CAATGCCTTCGGG-C-TAGCCCGGAATTAGTAACTCGCAC
1 AAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCAC
* * * * *
79069855 AAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 AAATGCCTTCGGGA-CATAGCCCGGATTTAGTAAC-TCGCAC
* *
79069896 AAAAGCCTTCGGGACTTAGCCCGGAT
1 AAATGCCTTCGGGACATAGCCCGGAT
79069922 ATCATTCGAA
Statistics
Matches: 126, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
37 2 0.02
38 31 0.25
39 2 0.02
40 61 0.48
41 27 0.21
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCAC
Found at i:79078017 original size:79 final size:79
Alignment explanation
Indices: 79077873--79078091 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
79077863 GAATCACATA
* * * * *
79077873 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
79077937 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
79077952 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
79078015 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* * *
79078031 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
79078092 TATCATTCGA
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.51
80 45 0.38
81 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:79078020 original size:39 final size:41
Alignment explanation
Indices: 79077887--79078091 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 41
79077877 CGGAATTTAA
* *
79077887 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79077927 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79077967 CCGG-ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
79078006 CCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
79078046 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
79078087 CCGGA
1 CCGGA
79078092 TATCATTCGA
Statistics
Matches: 143, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.24
40 81 0.57
41 23 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:79078805 original size:2 final size:2
Alignment explanation
Indices: 79078798--79078829 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
79078788 CATCATGTGC
79078798 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79078830 GCAAGAGCCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79082640 original size:20 final size:20
Alignment explanation
Indices: 79082592--79082641 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
79082582 CGGGCAAGGG
*
79082592 ACACGGGCATGTCCCTAAGC
1 ACACGGGCGTGTCCCTAAGC
79082612 ACACGGGCGTGTCCCTAAGC
1 ACACGGGCGTGTCCCTAAGC
79082632 ACACGGGCGT
1 ACACGGGCGT
79082642 ATGCTTTGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.34, G:0.30, T:0.14
Consensus pattern (20 bp):
ACACGGGCGTGTCCCTAAGC
Found at i:79085651 original size:17 final size:17
Alignment explanation
Indices: 79085628--79085672 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
79085618 CGTTTTCACA
79085628 TTTTTATTTATTA-TTT
1 TTTTTATTTATTACTTT
*
79085644 TCTTTTA-TTATGACTTT
1 T-TTTTATTTATTACTTT
79085661 TTTTTATTTATT
1 TTTTTATTTATT
79085673 TTGCTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (17 bp):
TTTTTATTTATTACTTT
Found at i:79085722 original size:3 final size:3
Alignment explanation
Indices: 79085714--79085773 Score: 57
Period size: 3 Copynumber: 19.0 Consensus size: 3
79085704 AAAATTTAGA
* ** *
79085714 TAT TAT TAT TAT TAT TAT TGT GGT TGT TACT TAT GTCAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT -T-AT TAT TAT TAT
79085762 TAT TAT TAT TAT
1 TAT TAT TAT TAT
79085774 CCCCTATATT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
3 43 0.86
4 5 0.10
5 2 0.04
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:79088996 original size:34 final size:34
Alignment explanation
Indices: 79088953--79089021 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
79088943 TAGCAGAAGT
79088953 GAAAACCCCATTGAGAGGGGTTAGGAAGAAAATG
1 GAAAACCCCATTGAGAGGGGTTAGGAAGAAAATG
*
79088987 GAAAACCCCATTGAGAGGGGTTTGGAAGAAAATG
1 GAAAACCCCATTGAGAGGGGTTAGGAAGAAAATG
79089021 G
1 G
79089022 TAGAAGAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.39, C:0.12, G:0.33, T:0.16
Consensus pattern (34 bp):
GAAAACCCCATTGAGAGGGGTTAGGAAGAAAATG
Found at i:79091937 original size:46 final size:46
Alignment explanation
Indices: 79091866--79091953 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
79091856 CAGATCAATT
79091866 GATTGAAGAAGATACAAATCCTATACCCCTGAGTTGCAGTGGGATG
1 GATTGAAGAAGATACAAATCCTATACCCCTGAGTTGCAGTGGGATG
* * *
79091912 GATTGGAGATGATACAAA-CCATATACCCTTGAGTTGCAGTGG
1 GATTGAAGAAGATACAAATCC-TATACCCCTGAGTTGCAGTGG
79091954 CATAGATAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 2 0.05
46 36 0.95
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (46 bp):
GATTGAAGAAGATACAAATCCTATACCCCTGAGTTGCAGTGGGATG
Found at i:79092405 original size:89 final size:89
Alignment explanation
Indices: 79092253--79092447 Score: 216
Period size: 89 Copynumber: 2.2 Consensus size: 89
79092243 TACAAATCTC
* * * * * * * *
79092253 ATCTTCTTGAAGTAGCAGTGGAGCAGATTGAAGTCATAGATCTTATCTCCTTGAAGTTGCAGTGG
1 ATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCCACAGACCTTATCTCCCTGAAGTTACAGTGG
* * **
79092318 AGTAGTTC-GAAGATGGCGAATATT
66 AGCA-TACTGAAGACAGCGAATATT
*
79092342 ATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCCACCAG-CCTTATCTCCCTGAGGTTACAGTG
1 ATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCCA-CAGACCTTATCTCCCTGAAGTTACAGTG
*
79092406 GAGCATACTGAAGACAGCGAATCTT
65 GAGCATACTGAAGACAGCGAATATT
79092431 AT-TTCCCTGAAGTTGCA
1 ATCTT-CCTGAAGTTGCA
79092448 ATGGAACAAA
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
88 4 0.04
89 83 0.93
90 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (89 bp):
ATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCCACAGACCTTATCTCCCTGAAGTTACAGTGG
AGCATACTGAAGACAGCGAATATT
Found at i:79092612 original size:143 final size:143
Alignment explanation
Indices: 79092330--79092612 Score: 356
Period size: 143 Copynumber: 2.0 Consensus size: 143
79092320 TAGTTCGAAG
* * * * *
79092330 ATGGCGAATATTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCCACCAGCCTTATCTCCCTG
1 ATGGCGAATATTATATTCCTAAAGTTACAGTAGAGCAGATCGAAGCCACCAGCCTTATCTCCCTA
* * * *
79092395 AGGTTACAGTGGAGCATACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCAATGGAACAAATT
66 AAGTTACAGTGGAGCAAACTGAAGACAGCGAATCTTATTTCCCTGAAGTTACAATGGAAAAAATT
* *
79092460 GAAGTTACAAATT
131 AAAGCTACAAATT
* * *
79092473 ATGGCGGATCTTATATTCCTAAAGTTACAGTGGAGCAGATCGAAGCCACCAGCCTTATCTCCCTA
1 ATGGCGAATATTATATTCCTAAAGTTACAGTAGAGCAGATCGAAGCCACCAGCCTTATCTCCCTA
* * * *
79092538 AAGTTGCA-TAGGAGCAAACTGAAGGCAGCGAATTTTATTTCCTTGAAGTTAC-A-GCGAAAAAG
66 AAGTTACAGT-GGAGCAAACTGAAGACAGCGAATCTTATTTCCCTGAAGTTACAATG-GAAAAA-
79092600 ATTAAAGCTACAA
128 ATTAAAGCTACAA
79092613 GTCGCAAACC
Statistics
Matches: 119, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
141 1 0.01
142 7 0.06
143 111 0.93
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (143 bp):
ATGGCGAATATTATATTCCTAAAGTTACAGTAGAGCAGATCGAAGCCACCAGCCTTATCTCCCTA
AAGTTACAGTGGAGCAAACTGAAGACAGCGAATCTTATTTCCCTGAAGTTACAATGGAAAAAATT
AAAGCTACAAATT
Found at i:79094287 original size:3 final size:3
Alignment explanation
Indices: 79094273--79094329 Score: 105
Period size: 3 Copynumber: 19.0 Consensus size: 3
79094263 ATTGATACTG
*
79094273 TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
79094321 TTA TTA TTA
1 TTA TTA TTA
79094330 ATTTTAAATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:79094672 original size:20 final size:19
Alignment explanation
Indices: 79094649--79094700 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
79094639 CACATTTTTA
79094649 TTTATTATTTATTATTTTCT
1 TTTATTATTTATT-TTTTCT
**
79094669 TTTATTATGCA-TTTTTCT
1 TTTATTATTTATTTTTTCT
79094687 TTT-TTATTTATTTT
1 TTTATTATTTATTTT
79094701 GCTTATTTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 5 0.19
18 12 0.44
19 1 0.04
20 9 0.33
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (19 bp):
TTTATTATTTATTTTTTCT
Found at i:79094750 original size:3 final size:3
Alignment explanation
Indices: 79094742--79094916 Score: 224
Period size: 3 Copynumber: 56.3 Consensus size: 3
79094732 AATTTAGATT
79094742 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** *
79094790 TTA TTA TTA TTA TTG TGG TTG TTA CTTA TGTCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA T-T-A TTA TTA TTA TTA TTA
* ** *
79094838 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TGG TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
79094886 CTTA TGTCA TTA TTA TTA TTA TTA TTA TTA T
1 -TTA T-T-A TTA TTA TTA TTA TTA TTA TTA T
79094917 CCCCTATATT
Statistics
Matches: 158, Mismatches: 8, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
3 144 0.91
4 10 0.06
5 4 0.03
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:79094956 original size:72 final size:72
Alignment explanation
Indices: 79094750--79094916 Score: 334
Period size: 72 Copynumber: 2.3 Consensus size: 72
79094740 TTTTATTATT
79094750 ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTGGTTGTTAC
1 ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTGGTTGTTAC
79094815 TTATGTC
66 TTATGTC
79094822 ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTGGTTGTTAC
1 ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTGGTTGTTAC
79094887 TTATGTC
66 TTATGTC
79094894 ATTATTATTATTATTATTATTAT
1 ATTATTATTATTATTATTATTAT
79094917 CCCCTATATT
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 95 1.00
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (72 bp):
ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTGGTTGTTAC
TTATGTC
Found at i:79095949 original size:26 final size:23
Alignment explanation
Indices: 79095918--79095974 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 23
79095908 GGCTATCCGA
79095918 AGCTTCCCGTTACATGGCTCTTTATG
1 AGCTTCCCG--ACA-GGCTCTTTATG
* *
79095944 AGCTTCCCGATAGGCTCTTTGTG
1 AGCTTCCCGACAGGCTCTTTATG
79095967 AGCTTCCC
1 AGCTTCCC
79095975 AATTAAAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 18 0.62
24 2 0.07
26 9 0.31
ACGTcount: A:0.14, C:0.30, G:0.21, T:0.35
Consensus pattern (23 bp):
AGCTTCCCGACAGGCTCTTTATG
Found at i:79103755 original size:24 final size:24
Alignment explanation
Indices: 79103728--79103934 Score: 333
Period size: 24 Copynumber: 8.6 Consensus size: 24
79103718 CTTATTATGT
* * *
79103728 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
79103752 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
79103776 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
79103800 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
79103824 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
79103848 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
79103872 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
79103896 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
79103920 TCGCACACTTAGTGC
1 TCGCACACATAGTGC
79103935 ATTTGAGATA
Statistics
Matches: 173, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 173 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:79109919 original size:32 final size:32
Alignment explanation
Indices: 79109882--79109944 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
79109872 ATGCTTACCA
79109882 TGCCCATCATCCATTAACTATTAAAATGCTAT
1 TGCCCATCATCCATTAACTATTAAAATGCTAT
79109914 TGCCCATCATCCATTAACTATTAAAATGCTA
1 TGCCCATCATCCATTAACTATTAAAATGCTA
79109945 AAATACATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.33
Consensus pattern (32 bp):
TGCCCATCATCCATTAACTATTAAAATGCTAT
Found at i:79118516 original size:20 final size:18
Alignment explanation
Indices: 79118480--79118520 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
79118470 TGTACATTTA
79118480 TCAATTCACAAACTCATT
1 TCAATTCACAAACTCATT
*
79118498 TCAATTTCACATAATTCATT
1 TCAA-TTCACA-AACTCATT
79118518 TCA
1 TCA
79118521 TTACCATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 4 0.20
19 6 0.30
20 10 0.50
ACGTcount: A:0.37, C:0.24, G:0.00, T:0.39
Consensus pattern (18 bp):
TCAATTCACAAACTCATT
Found at i:79118743 original size:13 final size:13
Alignment explanation
Indices: 79118725--79118764 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
79118715 AATTTGGCAA
79118725 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
79118738 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
79118751 TACTTTTGAAAAG
1 TGCTTTTGAAAAG
79118764 T
1 T
79118765 TTGGTTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:79127903 original size:27 final size:28
Alignment explanation
Indices: 79127873--79127942 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
79127863 ATAGTGAGTC
*
79127873 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
79127900 CGCACACTTAGTGTTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
79127928 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79127943 GTACAAGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 20 0.53
28 18 0.47
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:79129897 original size:48 final size:46
Alignment explanation
Indices: 79129795--79129919 Score: 137
Period size: 47 Copynumber: 2.7 Consensus size: 46
79129785 TCATTTGTGT
* ** *
79129795 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCATATTAGGAGA
1 GCTAGTGTAAGACATGTCTGAGACATGCATCAGCCATATGAGGAGA
79129841 GCTAGTGTAAGACCATGTCTGAGACATAGCATCAG-CAT-TGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGAGACAT-GCATCAGCCATATGAG--GAGA
* * *
79129889 GCTAGTGTAAGACATGTTTGGGACGTGCATC
1 GCTAGTGTAAGACATGTCTGAGACATGCATC
79129920 GGCCTCGAGA
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
46 20 0.29
47 27 0.40
48 21 0.31
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGAGACATGCATCAGCCATATGAGGAGA
Found at i:79131454 original size:93 final size:93
Alignment explanation
Indices: 79131293--79131465 Score: 229
Period size: 93 Copynumber: 1.9 Consensus size: 93
79131283 CGCCCATAAG
* *** *
79131293 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATGAGTGAACTAAGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAAGACTCAACTCA
*
79131358 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGAATGCCTAGTTACATCTCT
* * * ** *
79131386 CGAACTCATACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTTA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAAGACTCAACTCA
*
79131451 ACGAGTTCGAATGCC
66 ACGAGCTCGAATGCC
79131466 CAAATATCCT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAAGACTCAACTCA
ACGAGCTCGAATGCCTAGTTACATCTCT
Found at i:79132830 original size:50 final size:47
Alignment explanation
Indices: 79132771--79132893 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 47
79132761 AGTGTCAATA
*
79132771 TAAGACCATGTCTGGGACATGGCATCAGCACAGATA-CGTGAGAG-TCAGTG
1 TAAGACCATGTCTGGGACATGGCATCA--AC--ATAGCATGAGAGCT-AGTG
* * *
79132821 TAAGACCATGTCTAGGACATGGCGTCAACTTAGCATGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAACATAGCATGAGAGCTAGTG
*
79132868 TAAGACCATGTCTGGGATATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
79132894 GGCATTATAC
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
46 2 0.03
47 34 0.53
48 3 0.05
50 25 0.39
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGGCATCAACATAGCATGAGAGCTAGTG
Found at i:79134470 original size:39 final size:39
Alignment explanation
Indices: 79134427--79134556 Score: 152
Period size: 39 Copynumber: 3.3 Consensus size: 39
79134417 AATCTGTGAA
* *
79134427 AAATGCTAGATCTCATTATATTACCCGATGATTTACAAC
1 AAATGCTAGATCTCATTATATTACCCGAGGATCTACAAC
* * * *
79134466 AAATGCTAGATCTTATTATATTACTCGAGGATCTGCAGC
1 AAATGCTAGATCTCATTATATTACCCGAGGATCTACAAC
* * * * **
79134505 AAATGTTACATTTCGTTATATTACCTAAGGATCTACAAC
1 AAATGCTAGATCTCATTATATTACCCGAGGATCTACAAC
79134544 AAATGCTAGATCT
1 AAATGCTAGATCT
79134557 TGTTATAAAC
Statistics
Matches: 72, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (39 bp):
AAATGCTAGATCTCATTATATTACCCGAGGATCTACAAC
Found at i:79140203 original size:26 final size:26
Alignment explanation
Indices: 79140167--79140218 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
79140157 GAAGCCCTCT
*
79140167 AGCTCTGCTCAATGACCTAAGAAACA
1 AGCTCTGCTCAACGACCTAAGAAACA
79140193 AGCTCTGCTCAACGACCTAAGAAACA
1 AGCTCTGCTCAACGACCTAAGAAACA
79140219 GGCTAGATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.29, G:0.15, T:0.17
Consensus pattern (26 bp):
AGCTCTGCTCAACGACCTAAGAAACA
Found at i:79142653 original size:41 final size:41
Alignment explanation
Indices: 79142608--79142725 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
79142598 TGAAAGATAA
79142608 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
79142649 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79142679 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79142720 ATGTAG
1 ATGTAG
79142726 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:79142664 original size:71 final size:71
Alignment explanation
Indices: 79142576--79142739 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
79142566 GAGATGTATC
79142576 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79142641 AGGACA
66 AGGACA
79142647 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79142712 AGGACA
66 AGGACA
79142718 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
79142740 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:79150231 original size:41 final size:41
Alignment explanation
Indices: 79150186--79150303 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
79150176 TGAAAGATAA
79150186 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
79150227 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79150257 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79150298 ATGTAG
1 ATGTAG
79150304 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:79150242 original size:71 final size:71
Alignment explanation
Indices: 79150154--79150317 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
79150144 GAGATGTATC
79150154 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79150219 AGGACA
66 AGGACA
79150225 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79150290 AGGACA
66 AGGACA
79150296 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
79150318 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:79154024 original size:22 final size:22
Alignment explanation
Indices: 79153993--79154064 Score: 57
Period size: 22 Copynumber: 3.5 Consensus size: 22
79153983 CACAATACTC
79153993 ATATAATCACATAACATTTAAGT
1 ATAT-ATCACATAACATTTAAGT
*
79154016 ATATATCACACT-AC---TCA-T
1 ATATATCACA-TAACATTTAAGT
* *
79154034 ATA-ATCACATAACATTCAAGC
1 ATATATCACATAACATTTAAGT
79154055 ATATATCACA
1 ATATATCACA
79154065 ATACTCAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 15
0.67 0.07 0.26
Matches are distributed among these distances:
16 1 0.03
17 8 0.21
18 4 0.11
19 2 0.05
20 1 0.03
21 3 0.08
22 14 0.37
23 5 0.13
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.31
Consensus pattern (22 bp):
ATATATCACATAACATTTAAGT
Found at i:79154042 original size:17 final size:16
Alignment explanation
Indices: 79153976--79154044 Score: 50
Period size: 17 Copynumber: 3.9 Consensus size: 16
79153966 AACATTTAAG
79153976 CATAT-ATCACAATACT
1 CATATAATCAC-ATACT
79153992 CATATAATCACATAACATTT
1 CATATAATCACAT-AC---T
*
79154012 AAGTATATATCACACTACT
1 CA-TATA-ATCACA-TACT
79154031 CATATAATCACATA
1 CATATAATCACATA
79154045 ACATTCAAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 16
0.70 0.03 0.26
Matches are distributed among these distances:
16 9 0.21
17 13 0.30
18 4 0.09
19 2 0.05
20 2 0.05
21 4 0.09
22 8 0.19
23 1 0.02
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.32
Consensus pattern (16 bp):
CATATAATCACATACT
Found at i:79154070 original size:39 final size:39
Alignment explanation
Indices: 79153926--79154071 Score: 220
Period size: 39 Copynumber: 3.7 Consensus size: 39
79153916 GTAATGATAT
* * * * *
79153926 TAACTTTTAAGCGTATATCACATTACACATATAATCATA
1 TAACATTTAAGCATATATCACAATACTCATATAATCACA
79153965 TAACATTTAAGCATATATCACAATACTCATATAATCACA
1 TAACATTTAAGCATATATCACAATACTCATATAATCACA
* *
79154004 TAACATTTAAGTATATATCACACTACTCATATAATCACA
1 TAACATTTAAGCATATATCACAATACTCATATAATCACA
*
79154043 TAACATTCAAGCATATATCACAATACTCA
1 TAACATTTAAGCATATATCACAATACTCA
79154072 AAAACATGTT
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 97 1.00
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.32
Consensus pattern (39 bp):
TAACATTTAAGCATATATCACAATACTCATATAATCACA
Found at i:79160259 original size:21 final size:20
Alignment explanation
Indices: 79160199--79160259 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 20
79160189 TCGAACACGG
*
79160199 CTTATGACACGGGCGTGT-C
1 CTTATCACACGGGCGTGTGC
*
79160218 CTATGGTCACACGGGCGTGTGCC
1 CT-T-ATCACACGGGCGTGTG-C
79160241 CTTATCACACGGGCGTGTG
1 CTTATCACACGGGCGTGTG
79160260 TGTCTTGCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
19 2 0.06
20 1 0.03
21 28 0.80
22 1 0.03
23 3 0.09
ACGTcount: A:0.15, C:0.28, G:0.33, T:0.25
Consensus pattern (20 bp):
CTTATCACACGGGCGTGTGC
Found at i:79164271 original size:16 final size:16
Alignment explanation
Indices: 79164250--79164280 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79164240 TTATATTTAG
79164250 TAATATAATAAATTAT
1 TAATATAATAAATTAT
*
79164266 TAATATAATTAATTA
1 TAATATAATAAATTA
79164281 ATTTTAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TAATATAATAAATTAT
Found at i:79164392 original size:15 final size:15
Alignment explanation
Indices: 79164360--79164430 Score: 56
Period size: 15 Copynumber: 4.6 Consensus size: 15
79164350 ATATTATTGA
79164360 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
79164373 GAATATTTTAATAAT
1 AAATATTTTAATAAT
*
79164388 AAATATTTATTATATTTAT
1 AAATA-TT-TTA-A-TAAT
*
79164407 AAATATATTAATAAT
1 AAATATTTTAATAAT
*
79164422 AAATGTTTT
1 AAATATTTT
79164431 GTAGTATAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
13 4 0.09
14 6 0.13
15 16 0.36
16 3 0.07
17 6 0.13
18 2 0.04
19 8 0.18
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:79164928 original size:14 final size:14
Alignment explanation
Indices: 79164890--79164919 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
79164880 TCAGAAAAAT
79164890 AAATCATTTTCTAG
1 AAATCATTTTCTAG
79164904 AAATCATTTTCTAG
1 AAATCATTTTCTAG
79164918 AA
1 AA
79164920 GTTATTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (14 bp):
AAATCATTTTCTAG
Found at i:79165120 original size:13 final size:13
Alignment explanation
Indices: 79165102--79165129 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79165092 AAAGGGGTTC
79165102 TAAAATAAGTGTA
1 TAAAATAAGTGTA
79165115 TAAAATAAGTGTA
1 TAAAATAAGTGTA
79165128 TA
1 TA
79165130 GATCAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.32
Consensus pattern (13 bp):
TAAAATAAGTGTA
Found at i:79166966 original size:6 final size:6
Alignment explanation
Indices: 79166955--79166985 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
79166945 TACTTACTGT
*
79166955 TTTATA TTTATA TTTATA TTTATA TATATA T
1 TTTATA TTTATA TTTATA TTTATA TTTATA T
79166986 CCATGATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
TTTATA
Found at i:79170634 original size:26 final size:27
Alignment explanation
Indices: 79170582--79170634 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
79170572 TAAATCAAGC
* * *
79170582 TTTCCAAAAGTACTTCTCAAGATCAAT
1 TTTCCAAAAGCACTTCTCAAAAGCAAT
*
79170609 TTTCC-AAAGCACTTCTTAAAAGCAAT
1 TTTCCAAAAGCACTTCTCAAAAGCAAT
79170635 GCTAATCTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTCCAAAAGCACTTCTCAAAAGCAAT
Found at i:79176920 original size:40 final size:40
Alignment explanation
Indices: 79176840--79177058 Score: 345
Period size: 40 Copynumber: 5.5 Consensus size: 40
79176830 TTCGGATGAC
*
79176840 ATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
79176879 ATCCGGGCTAAGTCCCGAAGACAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
79176919 ATCCGGGCTAAGTCCTGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
79176959 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
79176999 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
79177039 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
79177059 TACTTGGGTG
Statistics
Matches: 168, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 37 0.22
40 129 0.77
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:79179164 original size:15 final size:16
Alignment explanation
Indices: 79179144--79179176 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
79179134 CGCACTTTAT
79179144 AAAAA-CTAAAAAGAA
1 AAAAACCTAAAAAGAA
*
79179159 AAAAACCTAAAATGAA
1 AAAAACCTAAAAAGAA
79179175 AA
1 AA
79179177 CTTAAACACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.76, C:0.09, G:0.06, T:0.09
Consensus pattern (16 bp):
AAAAACCTAAAAAGAA
Found at i:79180349 original size:177 final size:177
Alignment explanation
Indices: 79180090--79181049 Score: 1200
Period size: 177 Copynumber: 5.4 Consensus size: 177
79180080 CAACTTTAGG
* * * *
79180090 GAGATAAGGCTAGTGGCTAAAATCTGTTCTCGTGCTACCTC-GGAAAGATAAGATTCGA-CATCT
1 GAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCAGG-AAGATAAGATTC-ACCATCT
* * * *
79180153 TCGATCTGCTCCGCTACTGCTTAGGGAGATAAAATCTACAATCTTCAGTTTGCTTCCTTGCTACC
64 TCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACC
*
79180218 TCAGGAAGATAAGACTACAAACTTCAACCTACTCTCTTACTACCTCAGA
129 TCAGGAAGATAAGACTACAAACTTCAACCTACTCTCTTGCTACCTCAGA
*
79180267 GAGAT-AGGACTGGTGGCTAAAATCTACTCCCCTGCTACCTC-GAGAAGATAAGATTCACCATCT
1 GAGATAAGG-CTGGTGGCTAAAATCTGCTCCCCTGCTACCTCAG-GAAGATAAGATTCACCATCT
* * * *
79180330 TCGATCTACTCCACTACTGCTTAAGGAGATAATATCTACAATCTTTAGTCTGCTTCCTTGCTATC
64 TCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACC
* * * * *
79180395 TCAAGAAGATAAGACTTCAAACTTCAACCTGCTCTCATGCTATCTCAGA
129 TCAGGAAGATAAGACTACAAACTTCAACCTACTCTCTTGCTACCTCAGA
* * *
79180444 GGGATAAGGCTGGTGGCTAAAATCTGCTCCCAT-CTTACCTCAGGAAGATAAGATTCATCATCTT
1 GAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGC-TACCTCAGGAAGATAAGATTCACCATCTT
* * * * * *
79180508 C-AGTCCACTCCACTACTACTTAGGGAGATAAGGTCTACAATCTTTAGTCTGCTTCTTTGCTTCC
65 CGA-TCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACC
* *
79180572 TCAGGAAAATAAGACTACAAACTTCAACCTACTCTCTTGCTACCTTAGA
129 TCAGGAAGATAAGACTACAAACTTCAACCTACTCTCTTGCTACCTCAGA
* **
79180621 GAGATAAGGCTGGTGGCTAAAATCTGCCCCCCTGCTACCTCAGGAAGATAAGATTTGCCATCTTC
1 GAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCACCATCTTC
* * * * * ** * * *
79180686 GACCTGCTCCACTATTGTTTAAGGAGATAAGATCTATGATCTTCAATCTGTTTCCTTGCTACCTT
66 GATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACCTC
* * *
79180751 AGGAAGATAAGACTACAATCTTCGACCTGA-TCCCTTGCTACCTCAG-
131 AGGAAGATAAGACTACAAACTTCAACCT-ACTCTCTTGCTACCTCAGA
* * * *
79180797 GAAGATAAGGCTGGTTGCTAAAATCTGTTCCCCTGCTACCTCAGGAAGATAAGATTCATCATATT
1 G-AGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCACCATCTT
* * ** *
79180862 CGATCTACTCTACTACTGTTTAGGGAGATAAGATCTATGATCTTCAGTCTGCTTCCTGGCTACCT
65 CGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACCT
* * * *
79180927 CAGGAAGATAAGACTACAATCTTCGACCTGCTC-CTTGCTACATCAGA
130 CAGGAAGATAAGACTACAAACTTCAACCTACTCTCTTGCTACCTCAGA
* * * * *
79180974 AAGATAAGGCTGGTGGCTAAAATCTGTTCCCCTACTACTTCAGGAAGATAAGATTCGCCATCTTC
1 GAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCACCATCTTC
*
79181039 GATCTGCTCCA
66 GATCTACTCCA
79181050 TTGCTACCTC
Statistics
Matches: 679, Mismatches: 91, Indels: 27
0.85 0.11 0.03
Matches are distributed among these distances:
176 86 0.13
177 585 0.86
178 8 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (177 bp):
GAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCACCATCTTC
GATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACCTC
AGGAAGATAAGACTACAAACTTCAACCTACTCTCTTGCTACCTCAGA
Found at i:79180772 original size:44 final size:45
Alignment explanation
Indices: 79180710--79180805 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 45
79180700 TTGTTTAAGG
** * * * *
79180710 AGATAAGATCTATGATCTTCAATCTGTTTCCTTGCTACCTTAGGA
1 AGATAAGATCTACAATCTTCAACCTGATCCCTTGCTACCTCAGGA
*
79180755 AGATAAGA-CTACAATCTTCGACCTGATCCCTTGCTACCTCAGGA
1 AGATAAGATCTACAATCTTCAACCTGATCCCTTGCTACCTCAGGA
79180799 AGATAAG
1 AGATAAG
79180806 GCTGGTTGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 36 0.82
45 8 0.18
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (45 bp):
AGATAAGATCTACAATCTTCAACCTGATCCCTTGCTACCTCAGGA
Found at i:79182336 original size:22 final size:23
Alignment explanation
Indices: 79182302--79182344 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
79182292 CCTCTCCTTT
*
79182302 TTTTTTCTTTTTTTGATTGATAA
1 TTTTTTCTATTTTTGATTGATAA
79182325 TTTTTT-TATTTTTGATTGAT
1 TTTTTTCTATTTTTGATTGAT
79182345 TTTTTTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.16, C:0.02, G:0.09, T:0.72
Consensus pattern (23 bp):
TTTTTTCTATTTTTGATTGATAA
Found at i:79182359 original size:13 final size:12
Alignment explanation
Indices: 79182325--79182404 Score: 58
Period size: 13 Copynumber: 6.4 Consensus size: 12
79182315 TGATTGATAA
79182325 TTTT-TTTA-TT
1 TTTTATTTATTT
* *
79182335 TTTGATTGATTT
1 TTTTATTTATTT
79182347 TTTTATATTATTT
1 TTTTAT-TTATTT
*
79182360 TTTTATTCTTTCTTT
1 TTTTA---TTTATTT
79182375 TTTTATTT-TTAT
1 TTTTATTTATT-T
79182387 ATTTTATTTATTT
1 -TTTTATTTATTT
79182400 TTTTA
1 TTTTA
79182405 AGGTCTCAAG
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
10 3 0.05
11 5 0.09
12 16 0.29
13 19 0.34
14 2 0.04
15 10 0.18
16 1 0.02
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.79
Consensus pattern (12 bp):
TTTTATTTATTT
Found at i:79182396 original size:17 final size:15
Alignment explanation
Indices: 79182324--79182402 Score: 70
Period size: 15 Copynumber: 5.0 Consensus size: 15
79182314 TTGATTGATA
*
79182324 ATTTTTTTATTTTTG
1 ATTTTTTTATTTTTT
*
79182339 ATTGATTTTT-TTATATT
1 ATT--TTTTTATT-TTTT
*
79182356 ATTTTTTTATTCTTT
1 ATTTTTTTATTTTTT
*
79182371 CTTTTTTTATTTTTAT
1 ATTTTTTTATTTTT-T
79182387 ATTTTATTTATTTTTT
1 ATTTT-TTTATTTTTT
79182403 TAAGGTCTCA
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
15 22 0.43
16 10 0.20
17 19 0.37
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (15 bp):
ATTTTTTTATTTTTT
Found at i:79182403 original size:28 final size:27
Alignment explanation
Indices: 79182327--79182403 Score: 72
Period size: 27 Copynumber: 2.9 Consensus size: 27
79182317 ATTGATAATT
*
79182327 TTTTTATTTTTGATTGA-TTTTTTTATA
1 TTTTTATTTTT-ATTTATTTTTTTTATA
*
79182354 TTATT-TTTTTATTCT-TTCTTTTTT-TA
1 TTTTTATTTTTATT-TATT-TTTTTTATA
79182380 TTTTTATATTTTATTTATTTTTTT
1 TTTTTAT-TTTTATTTATTTTTTT
79182404 AAGGTCTCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
25 3 0.07
26 12 0.29
27 17 0.41
28 9 0.22
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.79
Consensus pattern (27 bp):
TTTTTATTTTTATTTATTTTTTTTATA
Found at i:79187651 original size:13 final size:13
Alignment explanation
Indices: 79187633--79187657 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79187623 TAGTATTGAG
79187633 CATGAAATAACAT
1 CATGAAATAACAT
79187646 CATGAAATAACA
1 CATGAAATAACA
79187658 ATGATAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (13 bp):
CATGAAATAACAT
Found at i:79187994 original size:15 final size:15
Alignment explanation
Indices: 79187974--79188007 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
79187964 AATCAAAAGT
*
79187974 TAATAATATGTAAAA
1 TAATAATATATAAAA
*
79187989 TAATAATATATAAAT
1 TAATAATATATAAAA
79188004 TAAT
1 TAAT
79188008 TTTAGAATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
TAATAATATATAAAA
Found at i:79189123 original size:6 final size:6
Alignment explanation
Indices: 79189112--79189141 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
79189102 TTTATAGCCG
79189112 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
79189142 TTACAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:79189576 original size:6 final size:6
Alignment explanation
Indices: 79189565--79189609 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
79189555 AGGTTTTCGA
* * *
79189565 AAATGG AAATGG AAATAG AAATGG AAATGG AAATGA AAAAGG AAA
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAA
79189610 CTATCCATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.60, C:0.00, G:0.27, T:0.13
Consensus pattern (6 bp):
AAATGG
Found at i:79191463 original size:3 final size:3
Alignment explanation
Indices: 79191449--79191512 Score: 119
Period size: 3 Copynumber: 21.0 Consensus size: 3
79191439 TACTATACTC
79191449 TAA TACA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
79191495 TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA
79191513 CTAAATAAAT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 57 0.95
4 3 0.05
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:79193648 original size:89 final size:89
Alignment explanation
Indices: 79193347--79193668 Score: 307
Period size: 91 Copynumber: 3.6 Consensus size: 89
79193337 GTGATCTTGA
** * * * * * *
79193347 GCTCAACTCATTTCTTGCAATATGAATTGGTTTTTTT--AAAACTTAATTTGAAAAGCT-GATTT
1 GCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGAAAAACATAAATTGAAAA-ATAGAATT
*
79193409 TGAAAGTACCT-CGACATGTGACCCGAG
65 TGAAAATACCTCCG-C--GTGACCCGAG
* * *
79193436 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAAAAAAATTT
1 GCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGAAAAACATAAATTGAAAAATAGAATTT
* ** * * *
79193501 GAAAATAGCTCAAAACATGAGCCAAG
66 GAAAATACCTC--CGCGTGACCCGAG
*
79193527 ACTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGAAAAACATAAATTGAAAAATAGAATTT
1 GCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGAAAAACATAAATTGAAAAATAGAATTT
79193592 GAAAATACCTCCGCGTG-CCCTGAG
66 GAAAATACCTCCGCGTGACCC-GAG
* *** * *
79193616 GCTCAACTCATCTCTTATAATATGAGTTGA--TTTTTGAAAAGCATAAATTGAAA
1 GCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGAAAAACATAAATTGAAA
79193669 TTACCTCAAC
Statistics
Matches: 191, Mismatches: 35, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
87 22 0.12
88 2 0.01
89 61 0.32
91 105 0.55
93 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (89 bp):
GCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGAAAAACATAAATTGAAAAATAGAATTT
GAAAATACCTCCGCGTGACCCGAG
Found at i:79193695 original size:73 final size:74
Alignment explanation
Indices: 79193576--79193744 Score: 205
Period size: 73 Copynumber: 2.3 Consensus size: 74
79193566 AAAACATAAA
** * ** * * *
79193576 TTGAAAAATAGAATTTGAAAATACCTCCGCGTGCCCTGAGGCTCAACTCATCTCTTATAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCACAATATGA
79193641 GTTGA-TTT
66 GTTGATTTT
* * * *
79193649 TTGAAAAGCATAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCACAATATGA
79193714 GTTGATTTTT
66 GTTGA-TTTT
*
79193724 TTGAAAAGCAGAATTTGAAAA
1 TTGAAAAGCAGAAATTGAAAA
79193745 GCAGAAATTG
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
73 58 0.73
75 21 0.27
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (74 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTT
Found at i:79193742 original size:14 final size:14
Alignment explanation
Indices: 79193723--79193758 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
79193713 AGTTGATTTT
79193723 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
79193737 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
*
79193751 ATTGAAAA
1 TTTGAAAA
79193759 TACCTCCGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.53, C:0.06, G:0.19, T:0.22
Consensus pattern (14 bp):
TTTGAAAAGCAGAA
Found at i:79193753 original size:89 final size:89
Alignment explanation
Indices: 79193648--79193812 Score: 285
Period size: 89 Copynumber: 1.9 Consensus size: 89
79193638 TGAGTTGATT
* * *
79193648 TTTGAAAAGCATAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
79193713 AGTTGATTTTTTTGAAAAGCAGAA
66 AGTTGATTTTTTTGAAAAGCAGAA
**
79193737 TTTGAAAAGCAGAAATTGAAAATACCTCCGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
79193802 AGTTGATTTTT
66 AGTTGATTTTT
79193813 AAAAAGCATA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 71 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (89 bp):
TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAAAAGCAGAA
Found at i:79193802 original size:162 final size:161
Alignment explanation
Indices: 79193528--79193906 Score: 609
Period size: 162 Copynumber: 2.4 Consensus size: 161
79193518 TGAGCCAAGA
* * * *
79193528 CTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGAAAAACATAAATTGAAAAATAGAATTTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAAAACAGAAATTG
* * * *
79193593 AAAATACCTCCGCGTGCCCTGAGGCTCAACTCATCTCTTATAATATGAGTTGATTTTTGAAAAGC
65 AAAATACCTCCGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTAAAAAGC
79193658 ATAAATTGAAATTACCTCAACGTGTCCTGAGG
130 ATAAATTGAAATTACCTCAACGTGTCCTGAGG
* *
79193690 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAATTTGAAAAGCAGAAATTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-CAGAAATTGAAAAACAGAAATTG
*
79193755 AAAATACCTCCGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAGC
65 AAAATACCTCCGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTAAAAAGC
*
79193820 ATAAATTGAAATTACCTCAGCGTGTCCTGAGG
130 ATAAATTGAAATTACCTCAACGTGTCCTGAGG
*
79193852 CTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAACAGAAA-T-AAAAACA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAACA
79193907 TTAAAATACC
Statistics
Matches: 201, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
159 6 0.03
160 1 0.00
161 9 0.04
162 185 0.92
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (161 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAACAGAAATTGA
AAATACCTCCGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTAAAAAGCA
TAAATTGAAATTACCTCAACGTGTCCTGAGG
Found at i:79193860 original size:73 final size:73
Alignment explanation
Indices: 79193741--79193885 Score: 245
Period size: 73 Copynumber: 2.0 Consensus size: 73
79193731 GCAGAATTTG
*
79193741 AAAAGCAGAAATTGAAAATACCTCCGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
79193806 GATTTTTA
66 GATTTTTA
* * * *
79193814 AAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
79193879 GATTTTT
66 GATTTTT
79193886 TTGAAAACAG
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 67 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (73 bp):
AAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTA
Found at i:79196263 original size:3 final size:3
Alignment explanation
Indices: 79196255--79196290 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
79196245 AAGTATACTC
79196255 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
79196291 ATAAATAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:79196295 original size:4 final size:4
Alignment explanation
Indices: 79196286--79196314 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
79196276 TAATAATAAT
79196286 AATA AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA A
79196315 GAAATACACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:79196301 original size:15 final size:13
Alignment explanation
Indices: 79196255--79196310 Score: 71
Period size: 12 Copynumber: 4.2 Consensus size: 13
79196245 AAGTATACTC
79196255 TAATAATAAT-AA
1 TAATAATAATAAA
79196267 TAATAATAAT-AA
1 TAATAATAATAAA
79196279 TAATAATAATAAA
1 TAATAATAATAAA
79196292 TAAATAAATAAATAAA
1 T-AAT-AAT-AATAAA
79196308 TAA
1 TAA
79196311 ATAAGAAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
12 22 0.55
13 3 0.08
14 3 0.08
15 5 0.12
16 7 0.17
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
TAATAATAATAAA
Found at i:79198146 original size:40 final size:40
Alignment explanation
Indices: 79198101--79198267 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
79198091 CGGAATATAA
*
79198101 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
79198141 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
79198181 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
79198221 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
79198260 CCGGATAT
1 CCGGATAT
79198268 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79208240 original size:13 final size:13
Alignment explanation
Indices: 79208207--79208240 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
79208197 TGAGAAATAC
79208207 AAACAAAAAAGAA
1 AAACAAAAAAGAA
*
79208220 AAAGAAAAAAGAA
1 AAACAAAAAAGAA
*
79208233 ACACAAAA
1 AAACAAAA
79208241 TGGAATACTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.82, C:0.09, G:0.09, T:0.00
Consensus pattern (13 bp):
AAACAAAAAAGAA
Found at i:79208350 original size:36 final size:36
Alignment explanation
Indices: 79208302--79208371 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
79208292 TACAAAAAAA
*
79208302 AAAAAAAAAGGAGCTCCAATAGCCTATGATCAATAC
1 AAAAAAAAAGGAGCCCCAATAGCCTATGATCAATAC
*
79208338 AAAAAAATAGGAGCCCCAATAGCCTATGATCAAT
1 AAAAAAAAAGGAGCCCCAATAGCCTATGATCAAT
79208372 CACTGTAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.49, C:0.20, G:0.14, T:0.17
Consensus pattern (36 bp):
AAAAAAAAAGGAGCCCCAATAGCCTATGATCAATAC
Found at i:79210953 original size:20 final size:20
Alignment explanation
Indices: 79210928--79210966 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
79210918 GTATGAAAGA
79210928 AAAATATA-ACTAATAATATT
1 AAAATATATA-TAATAATATT
79210948 AAAATATATATAATAATAT
1 AAAATATATATAATAATAT
79210967 ATATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAATATATATAATAATATT
Found at i:79210982 original size:12 final size:11
Alignment explanation
Indices: 79210943--79210978 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
79210933 ATAACTAATA
79210943 ATAT-TAAAAT
1 ATATATAAAAT
79210953 ATATATAATAAT
1 ATATATAA-AAT
79210965 ATATATAAAAT
1 ATATATAAAAT
79210976 ATA
1 ATA
79210979 ATATTAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.17
11 9 0.38
12 11 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
ATATATAAAAT
Found at i:79211197 original size:13 final size:14
Alignment explanation
Indices: 79211179--79211209 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
79211169 ATGTATGAAT
79211179 ATATACATATA-TA
1 ATATACATATATTA
79211192 ATATACATATATTA
1 ATATACATATATTA
79211206 ATAT
1 ATAT
79211210 TAATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:79213164 original size:68 final size:68
Alignment explanation
Indices: 79213054--79213227 Score: 303
Period size: 68 Copynumber: 2.5 Consensus size: 68
79213044 TGAAACGTAG
*
79213054 AAATTAAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTCGAAAAGTAGATTTCGAAAA
1 AAATT-AAAGGCTCAACTCACCTCTCGCAATATGAGTTAATAATTCGAAAAGTAGATTTCGAAAA
79213119 ACGA
65 ACGA
* *
79213123 AAATTAAAGGCTCAACTCACCTCTCACAATATGAGTTAATAATTCGAAGAGTAGATTTCGAAAAA
1 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTAATAATTCGAAAAGTAGATTTCGAAAAA
*
79213188 TGA
66 CGA
79213191 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTT
79213228 GATCTTTGAA
Statistics
Matches: 100, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
68 95 0.95
69 5 0.05
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.25
Consensus pattern (68 bp):
AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTAATAATTCGAAAAGTAGATTTCGAAAAA
CGA
Found at i:79213374 original size:72 final size:72
Alignment explanation
Indices: 79213279--79213679 Score: 328
Period size: 71 Copynumber: 5.5 Consensus size: 72
79213269 AATTAAAAGA
* * *
79213279 CTCAACTCACCTCTCGCAATATGAATTGACTCTTTA-A-GATA-GAATTTGAAAATACCTTAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTAGATAATAGGAA-TTGAAAATACCTCAGCG
*
79213341 TGCCGCAAGG
63 TGCCCCAAGG
* *
79213351 CTCAACTCACCTCTCGCAATATGAGTCGATTTTAGATTTAATAGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGA--TAATAGGAATTGAAAATACCTCAGCGT
79213416 GCCCCAAGG
64 GCCCCAAGG
* * * * * * * * *
79213425 TTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA-AACATGAATTGAAATTACCCCAACGTGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATAATAGGAATTGAAAATACCTCAGCGTGC
***
79213489 CTTGAGG
66 CCCAAGG
* * *
79213496 CTCAACTCATCTCTCGCAATATGAGCTGATTTTCATGAATTAAAAAGCAGAAATTGAAAATACCT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT-A-G-A-T-AATAG--G-AATTGAAAATACCT
*
79213561 CAGCGTGCCCCGAGG
58 CAGCGTGCCCCAAGG
* * * * * * *
79213576 TTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATA--AATCGAAATTACCTCAACGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATA-ATAGGAATTGAAAATACCTCAGCGTG
* ***
79213639 TCTTGAGG
65 CCCCAAGG
*
79213647 CTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
79213680 CTTGGAAAAC
Statistics
Matches: 267, Mismatches: 47, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
70 4 0.01
71 111 0.42
72 27 0.10
73 1 0.00
74 60 0.22
75 4 0.01
76 2 0.01
77 4 0.01
78 1 0.00
79 1 0.00
80 52 0.19
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (72 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATAATAGGAATTGAAAATACCTCAGCGTGC
CCCAAGG
Found at i:79213823 original size:72 final size:72
Alignment explanation
Indices: 79213706--79213840 Score: 216
Period size: 72 Copynumber: 1.9 Consensus size: 72
79213696 TAAAAAGCAG
* * *
79213706 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTTTT
79213771 GAGGCAT
66 GAGGCAT
* * *
79213778 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTT
79213841 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 57 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (72 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTTTT
GAGGCAT
Found at i:79213850 original size:161 final size:160
Alignment explanation
Indices: 79213396--79213931 Score: 840
Period size: 151 Copynumber: 3.4 Consensus size: 160
79213386 ATTTAATAGG
* * *
79213396 AATTGAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* *
79213461 AACATGAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCA-TCTCTCGCAATATGAGCTGA
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACT-TCTCGCAATATGAGCTGA
79213525 --TT-TT------CATGAATTAAAAAGCAGA
130 TTTTCTTGGAAAACATGAATTAAAAAGCAGA
*
79213547 AATTGAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* *
79213612 AACATAAATCGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGCTGAT
79213677 TTTCTTGGAAAACATGAATTAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
*
79213707 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTG
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTG
** *
79213772 AGGCATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGAAATATGAGCTGA
65 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGCTGA
*
79213837 TTTTCTTGGAAAACATAAATTTAAAAAGCAGA
130 TTTTCTTGGAAAACATGAA-TTAAAAAGCAGA
* *
79213869 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
79213932 TGGAAAACAT
Statistics
Matches: 358, Mismatches: 15, Indels: 14
0.93 0.04 0.04
Matches are distributed among these distances:
151 122 0.34
153 2 0.01
154 2 0.01
160 74 0.21
161 89 0.25
162 69 0.19
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (160 bp):
AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAGA
Found at i:79213974 original size:89 final size:89
Alignment explanation
Indices: 79213778--79214020 Score: 387
Period size: 89 Copynumber: 2.7 Consensus size: 89
79213768 TTTGAGGCAT
* * * * *
79213778 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTTCT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-T
79213843 TGGAAAACATAAATTTAAAAAGCAG
65 TGGAAAACATAAATTTAAAAAGCAG
* *
79213868 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
* *
79213933 GGAAAACATGAATTTAAGAAGCAG
66 GGAAAACATAAATTTAAAAAGCAG
*
79213957 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
79214021 GAGGCATAAA
Statistics
Matches: 141, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
89 85 0.60
90 56 0.40
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
GGAAAACATAAATTTAAAAAGCAG
Found at i:79214073 original size:71 final size:71
Alignment explanation
Indices: 79213957--79214090 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
79213947 TAAGAAGCAG
* * * *
79213957 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTTTG
79214022 AGGCAT
66 AGGCAT
* *
79214028 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTT
79214091 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTTTG
AGGCAT
Found at i:79214147 original size:161 final size:160
Alignment explanation
Indices: 79213868--79214181 Score: 529
Period size: 161 Copynumber: 2.0 Consensus size: 160
79213858 TAAAAAGCAG
* ** *
79213868 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTTTT
* * *
79213933 GGAAAACATGAATTTAAGAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATT
66 GGAAAACATGAATTTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACT
79213998 TCTCGCAATATGAGTTGATTTTTGAGGCAT
131 TCTCGCAATATGAGTTGATTTTTGAGGCAT
* * *
79214028 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTTCT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTT-T
79214093 TGGAAAACATGAATTTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCAC
65 TGGAAAACATGAATTTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCAC
79214158 TTCTCGCAATATGAGTTGATTTTT
130 TTCTCGCAATATGAGTTGATTTTT
79214182 TGGAAAAAAC
Statistics
Matches: 143, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
160 56 0.39
161 87 0.61
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (160 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTTTT
GGAAAACATGAATTTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACT
TCTCGCAATATGAGTTGATTTTTGAGGCAT
Found at i:79214214 original size:250 final size:250
Alignment explanation
Indices: 79213617--79214188 Score: 1011
Period size: 250 Copynumber: 2.3 Consensus size: 250
79213607 TTTGAAACAT
* * * * * * *
79213617 AAATCGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-T
*
79213682 TGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACT
65 TGGAAAACATGAATTAAGAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACT
79213747 TCTCGCAATATGAGTTGATTTTTTGAGGCATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
130 TCTCGCAATATGAGTTGATTTTTTGAGGCATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
79213812 ACTCACTTCTCGAAATATGAGCTGATTTTCTTGGAAAACATAAATTTAAAAAGCAG
195 ACTCACTTCTCGAAATATGAGCTGATTTTCTTGGAAAACATAAATTTAAAAAGCAG
*
79213868 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
* *
79213933 GGAAAACATGAATTTAAGAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATT
66 GGAAAACATGAA-TTAAGAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACT
79213998 TCTCGCAATATGAGTTGA-TTTTTGAGGCATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
130 TCTCGCAATATGAGTTGATTTTTTGAGGCATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
*
79214062 ACTCACTTCTCGAAATATGAGCTGATTTTCTTGGAAAACATGAATTTAAAAAGCAG
195 ACTCACTTCTCGAAATATGAGCTGATTTTCTTGGAAAACATAAATTTAAAAAGCAG
79214118 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
79214183 GGAAAA
66 GGAAAA
79214189 AACAAAATTG
Statistics
Matches: 307, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
250 185 0.60
251 122 0.40
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (250 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
GGAAAACATGAATTAAGAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTT
CTCGCAATATGAGTTGATTTTTTGAGGCATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAA
CTCACTTCTCGAAATATGAGCTGATTTTCTTGGAAAACATAAATTTAAAAAGCAG
Found at i:79226842 original size:49 final size:46
Alignment explanation
Indices: 79226752--79226892 Score: 114
Period size: 49 Copynumber: 3.0 Consensus size: 46
79226742 ACATACACAC
**
79226752 ATATA-AATATATATA-ATAATAGTATTAGAAATATACCATATAATATTA
1 ATATATAATATATATATATAATAGTA-T-GAAA-A-AAAATATAATATTA
*
79226800 GATATATATATATATATATATAATAGTATGAAAGAAAAATATAACTAATA
1 -ATATATA-ATATATATATATAATAGTATGAAA-AAAAATATAA-TATTA
* * *
79226850 ATAT-TAA-A-ATATATATAATAATAT-ATATAAAATATAATATTA
1 ATATATAATATATATATATAATAGTATGAAAAAAAATATAATATTA
79226892 A
1 A
79226893 GAACTTATAT
Statistics
Matches: 80, Mismatches: 8, Indels: 15
0.78 0.08 0.15
Matches are distributed among these distances:
42 5 0.06
43 9 0.11
44 2 0.03
45 15 0.19
46 1 0.01
47 1 0.01
48 2 0.03
49 16 0.20
50 10 0.12
51 10 0.12
52 9 0.11
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (46 bp):
ATATATAATATATATATATAATAGTATGAAAAAAAATATAATATTA
Found at i:79226860 original size:20 final size:20
Alignment explanation
Indices: 79226835--79226873 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
79226825 GTATGAAAGA
79226835 AAAATATA-ACTAATAATATT
1 AAAATATATA-TAATAATATT
79226855 AAAATATATATAATAATAT
1 AAAATATATATAATAATAT
79226874 ATATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAATATATATAATAATATT
Found at i:79226889 original size:12 final size:11
Alignment explanation
Indices: 79226850--79226885 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
79226840 ATAACTAATA
79226850 ATAT-TAAAAT
1 ATATATAAAAT
79226860 ATATATAATAAT
1 ATATATAA-AAT
79226872 ATATATAAAAT
1 ATATATAAAAT
79226883 ATA
1 ATA
79226886 ATATTAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.17
11 9 0.38
12 11 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
ATATATAAAAT
Found at i:79227105 original size:13 final size:14
Alignment explanation
Indices: 79227087--79227117 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
79227077 ATGTATGAAT
79227087 ATATACATATA-TA
1 ATATACATATATTA
79227100 ATATACATATATTA
1 ATATACATATATTA
79227114 ATAT
1 ATAT
79227118 TAGTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:79227779 original size:86 final size:87
Alignment explanation
Indices: 79227666--79227833 Score: 304
Period size: 86 Copynumber: 1.9 Consensus size: 87
79227656 AAAGGAAAAA
79227666 AAAAAAAAAGGAGAGAGAAAGGAGAGGGGGAGAGGGGAGGAGAGA-GGCTCCGG-CACGGACCGG
1 AAAAAAAAAGGAGAGAGAAAGGAGAGGGGGAGAGGGGAGGAGAGAGGGCTCCGGCCACGGACCGG
79227729 TCATCGGCCGGTCGCCGAAAGG
66 TCATCGGCCGGTCGCCGAAAGG
*
79227751 AAAAAAAAAGGAGAGAGAAAAGGAGAGGGGGAGAGGGGAGGAGAGAGGGCTCCGGCCTCGGACCG
1 AAAAAAAAAGGAGAGAG-AAAGGAGAGGGGGAGAGGGGAGGAGAGAGGGCTCCGGCCACGGACCG
79227816 GTCATCGGCCGGTCGCCG
65 GTCATCGGCCGGTCGCCG
79227834 GACGGTCACT
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
85 17 0.22
86 28 0.35
87 8 0.10
88 26 0.33
ACGTcount: A:0.33, C:0.17, G:0.45, T:0.05
Consensus pattern (87 bp):
AAAAAAAAAGGAGAGAGAAAGGAGAGGGGGAGAGGGGAGGAGAGAGGGCTCCGGCCACGGACCGG
TCATCGGCCGGTCGCCGAAAGG
Found at i:79230000 original size:20 final size:21
Alignment explanation
Indices: 79229954--79230000 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
79229944 ACCTAAAGCT
79229954 TAATAT-AGGAATACTATAAA
1 TAATATAAGGAATACTATAAA
*
79229974 TAA-ATAAGGAATGCTAT-AA
1 TAATATAAGGAATACTATAAA
79229993 TAATATAA
1 TAATATAA
79230001 TTATGGTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.55, C:0.04, G:0.11, T:0.30
Consensus pattern (21 bp):
TAATATAAGGAATACTATAAA
Found at i:79230347 original size:24 final size:24
Alignment explanation
Indices: 79230324--79230368 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
79230314 TAATGAAAAT
*
79230324 TTGAAA-ATAAATAAAGAATTAAA
1 TTGAAATATAAATAAAAAATTAAA
*
79230347 TTGAAATTTAAATAAAAAATTA
1 TTGAAATATAAATAAAAAATTA
79230369 TAAATCGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (24 bp):
TTGAAATATAAATAAAAAATTAAA
Found at i:79230487 original size:3 final size:3
Alignment explanation
Indices: 79230474--79230563 Score: 146
Period size: 3 Copynumber: 29.7 Consensus size: 3
79230464 AAAATGCATG
*
79230474 AAT AGAT AAT AAT AAT GAT AAT AGAT AA- AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
79230520 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
79230564 GAAGAAGAAG
Statistics
Matches: 82, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
2 2 0.02
3 74 0.90
4 6 0.07
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:79230568 original size:3 final size:3
Alignment explanation
Indices: 79230562--79230599 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
79230552 TAATAATAAT
79230562 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
79230600 AGAAACAACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:79232134 original size:44 final size:43
Alignment explanation
Indices: 79232070--79232186 Score: 146
Period size: 44 Copynumber: 2.7 Consensus size: 43
79232060 ATCTGCTCTA
*
79232070 CTGCTCCACTGCCACTTCAGGGAGATAAGGCCTG-TGGCTTTAAT
1 CTGCTCCACTG-CACTTCAGGGAGATAAGG-CTGATGGCTTCAAT
*
79232114 TTGCTCCACTGCATCTTCAGGGAGATAAGGCTGATGGCTTCAAT
1 CTGCTCCACTGCA-CTTCAGGGAGATAAGGCTGATGGCTTCAAT
* * *
79232158 CTACTCCACAGCAACTTCAGGAAGATAAG
1 CTGCTCCACTGC-ACTTCAGGGAGATAAG
79232187 ATTTGCCATA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
43 5 0.08
44 58 0.91
45 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (43 bp):
CTGCTCCACTGCACTTCAGGGAGATAAGGCTGATGGCTTCAAT
Found at i:79232363 original size:45 final size:44
Alignment explanation
Indices: 79232259--79232654 Score: 125
Period size: 44 Copynumber: 8.7 Consensus size: 44
79232249 TCTTTGATCA
*
79232259 GCTCCACTGCAACTTTAAGGAGATAAGATTTACAACTTCAATAT
1 GCTCCACTGCAACTTCAAGGAGATAAGATTTACAACTTCAATAT
* * * * ** * *
79232303 GCTCTACTGCTACTTCAAGGAGATGAGATTTGCTGTCTTCAGTCT
1 GCTCCACTGCAACTTCAAGGAGATAAGATTTAC-AACTTCAATAT
* * * ***** * *
79232348 GCTCCGCTGCAACTTCAAGGAGACAAGGTTGGTGGCTTTAATCT
1 GCTCCACTGCAACTTCAAGGAGATAAGATTTACAACTTCAATAT
* * *
79232392 GCTTCACTGCAACTTC-AGGAAGATAAGATCTGT-CGTAATTTGTAGCTTTAATCT
1 GCTCCACTGCAACTTCAAGG-AGATAAGAT-T-TAC---A-----A-CTTCAATAT
* * * * * * ** *
79232446 GTTCCACAGCAACGTC-AGGTAAATAAGATTTGCTATCTTCTGTCT
1 GCTCCACTGCAACTTCAAGG-AGATAAGATTTAC-AACTTCAATAT
* * * *****
79232491 GCTCTACTGCAACTTCAGGGAGATAAGACTGGTGGCTTCAATAT
1 GCTCCACTGCAACTTCAAGGAGATAAGATTTACAACTTCAATAT
* * * ** *
79232535 GCTCCACTACAACTTCAAGAAGATAAGATCTGT-CATCTTTGATCT
1 GCTCCACTGCAACTTCAAGGAGATAAGAT-T-TACAACTTCAATAT
* * * * *
79232580 ACTCCACTGCAACTTCAAGGAGATAAGATCTACCACGTCAATCT
1 GCTCCACTGCAACTTCAAGGAGATAAGATTTACAACTTCAATAT
* * * *
79232624 GCTCCACTACTACTTCAGGGAGATGAGATTT
1 GCTCCACTGCAACTTCAAGGAGATAAGATTT
79232655 GTGGATTCAC
Statistics
Matches: 254, Mismatches: 80, Indels: 36
0.69 0.22 0.10
Matches are distributed among these distances:
43 4 0.02
44 119 0.47
45 93 0.37
46 2 0.01
51 1 0.00
52 1 0.00
53 2 0.01
54 32 0.13
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAAGGAGATAAGATTTACAACTTCAATAT
Found at i:79232592 original size:232 final size:232
Alignment explanation
Indices: 79232117--79232602 Score: 600
Period size: 232 Copynumber: 2.1 Consensus size: 232
79232107 CTTTAATTTG
* * *
79232117 CTCCACTGCATCTTCAGGGAGATAAGGCTGATGGCTTCAATCTACTCCACAGCAACTTCAGGAAG
1 CTCCACTGCAACTTCAAGGAGACAAGGCTGATGGCTTCAATCTACTCCACAGCAACTTCAGGAAG
* * *
79232182 ATAAGATTTGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTTAGGGAAATAAGATTCGC
66 ATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCACAGCAACGTCAGGGAAATAAGATTCGC
* * * * *
79232247 TATCTTTGATCAGCTCCACTGCAACTTTAAGGAGATAAGATTTACAACTTCAATATGCTCTACTG
131 TATCTTTGATCAGCTCCACTGCAACTTCAAGGAGATAAGACTGACAACTTCAATATGCTCCACTA
* * * * * *
79232312 CTACTTCAAGGAGATGAGATTTGCTGTCTTCAGTCTG
196 CAACTTCAAGAAGATAAGATCTGCTCTCTTCAGTCTA
* * * * * * *
79232349 CTCCGCTGCAACTTCAAGGAGACAAGGTTGGTGGCTTTAATCTGCTTCACTGCAACTTCAGGAAG
1 CTCCACTGCAACTTCAAGGAGACAAGGCTGATGGCTTCAATCTACTCCACAGCAACTTCAGGAAG
* * * *
79232414 ATAAGATCTGTCGTAATTTGTAGCTTTAATCTGTTCCACAGCAACGTCAGGTAAATAAGATTTGC
66 ATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCACAGCAACGTCAGGGAAATAAGATTCGC
* * * ****
79232479 TATCTTCTG-TCTGCTCTACTGCAACTTCAGGGAGATAAGACTGGTGGCTTCAATATGCTCCACT
131 TATCTT-TGATCAGCTCCACTGCAACTTCAAGGAGATAAGACTGACAACTTCAATATGCTCCACT
*
79232543 ACAACTTCAAGAAGATAAGATCTG-TCATCTT-TGATCTA
195 ACAACTTCAAGAAGATAAGATCTGCTC-TCTTCAG-TCTA
79232581 CTCCACTGCAACTTCAAGGAGA
1 CTCCACTGCAACTTCAAGGAGA
79232603 TAAGATCTAC
Statistics
Matches: 214, Mismatches: 37, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
231 2 0.01
232 210 0.98
233 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (232 bp):
CTCCACTGCAACTTCAAGGAGACAAGGCTGATGGCTTCAATCTACTCCACAGCAACTTCAGGAAG
ATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCACAGCAACGTCAGGGAAATAAGATTCGC
TATCTTTGATCAGCTCCACTGCAACTTCAAGGAGATAAGACTGACAACTTCAATATGCTCCACTA
CAACTTCAAGAAGATAAGATCTGCTCTCTTCAGTCTA
Found at i:79232646 original size:44 final size:45
Alignment explanation
Indices: 79232528--79232652 Score: 135
Period size: 45 Copynumber: 2.8 Consensus size: 45
79232518 ACTGGTGGCT
* * ** *
79232528 TCAATATGCTCCACTACAACTTCAAGAAGATAAGATCTGTCATCT
1 TCAATCTGCTCCACTACAACTTCAAGGAGATAAGATCTACCATCG
** * *
79232573 TTGATCTACTCCACTGCAACTTCAAGGAGATAAGATCTACCA-CG
1 TCAATCTGCTCCACTACAACTTCAAGGAGATAAGATCTACCATCG
* * *
79232617 TCAATCTGCTCCACTACTACTTCAGGGAGATGAGAT
1 TCAATCTGCTCCACTACAACTTCAAGGAGATAAGAT
79232653 TTGTGGATTC
Statistics
Matches: 64, Mismatches: 16, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
44 30 0.47
45 34 0.53
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (45 bp):
TCAATCTGCTCCACTACAACTTCAAGGAGATAAGATCTACCATCG
Found at i:79239880 original size:20 final size:21
Alignment explanation
Indices: 79239834--79239880 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
79239824 ACCTAAAGTT
*
79239834 TAATAT-AGGAATACTATAAA
1 TAATATAAGAAATACTATAAA
*
79239854 TAA-ATAAGAAATGCTAT-AA
1 TAATATAAGAAATACTATAAA
79239873 TAATATAA
1 TAATATAA
79239881 TTATGGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.30
Consensus pattern (21 bp):
TAATATAAGAAATACTATAAA
Done.