Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 254 of 433
Found at i:79240251 original size:23 final size:23
Alignment explanation
Indices: 79240202--79240252 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
79240192 AACTAATGAA
**
79240202 AAATTGAAAATAAATAAAGAATT
1 AAATTGAAAATAAATAAAGAAAC
*
79240225 AAATTGAAATTTAAATAAA-AAAC
1 AAATTGAAA-ATAAATAAAGAAAC
79240248 AAATT
1 AAATT
79240253 ATAAATCGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (23 bp):
AAATTGAAAATAAATAAAGAAAC
Found at i:79240372 original size:3 final size:3
Alignment explanation
Indices: 79240359--79240444 Score: 129
Period size: 3 Copynumber: 28.3 Consensus size: 3
79240349 AAAATGCATG
* *
79240359 AAT AGAT AAT AAT AAT GAT AAT AGAT AA- AAT AAT AAT AGT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
79240405 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
79240445 GTAAGAAAAA
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
2 2 0.03
3 68 0.89
4 6 0.08
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:79245654 original size:24 final size:26
Alignment explanation
Indices: 79245625--79245673 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
79245615 CTTGTTTTAA
* *
79245625 TATTTG-TTT-TTATGTTTTTAAATG
1 TATTTGATTTATTATATTTTAAAATG
79245649 TATTTGATTTATTATATTTTAAAAT
1 TATTTGATTTATTATATTTTAAAAT
79245674 ATTTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (26 bp):
TATTTGATTTATTATATTTTAAAATG
Found at i:79245676 original size:24 final size:25
Alignment explanation
Indices: 79245623--79245683 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
79245613 TTCTTGTTTT
*
79245623 AATATTTG-TTT-TTATGTTTTTAA
1 AATATTTGATTTATTATGATTTTAA
*
79245646 ATGTATTTGATTTATTAT-ATTTTAA
1 A-ATATTTGATTTATTATGATTTTAA
*
79245671 AATATTTTATTTA
1 AATATTTGATTTA
79245684 ATAAAATAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
23 1 0.03
24 16 0.52
25 10 0.32
26 4 0.13
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (25 bp):
AATATTTGATTTATTATGATTTTAA
Found at i:79247296 original size:40 final size:39
Alignment explanation
Indices: 79247251--79247457 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
79247241 CGGAATACAA
*
79247251 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79247291 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79247331 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
79247371 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTA-A
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
79247410 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
79247450 CCGGATAT
1 CCGGATAT
79247458 CATTCAATTG
Statistics
Matches: 140, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 32 0.23
40 108 0.77
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79247391 original size:80 final size:80
Alignment explanation
Indices: 79247249--79247455 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
79247239 TTCGGAATAC
* * *
79247249 AACCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAA
1 AACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAA
79247313 ATGCCTTCGGGTATT
66 ATGCCTTCGGGTATT
* * *
79247328 AGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCAC
1 A-ACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCAC
* *
79247391 AATTGCCTTCGGGTCTT
64 AAATGCCTTCGGGTATT
** * ** * *
79247408 AACCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 AACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
79247456 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
79 39 0.36
80 65 0.60
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
AACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAA
ATGCCTTCGGGTATT
Found at i:79255241 original size:40 final size:39
Alignment explanation
Indices: 79255196--79255402 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
79255186 CGGAATACAA
*
79255196 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79255236 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79255276 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
79255316 CCGGATGTAGTCACTAACACAATTGCCTTCGGGTCTTA-A
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
79255355 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
79255395 CCGGATAT
1 CCGGATAT
79255403 CATTCAATTG
Statistics
Matches: 138, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 31 0.22
40 107 0.78
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79255337 original size:80 final size:80
Alignment explanation
Indices: 79255194--79255400 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 80
79255184 TTCGGAATAC
* * **
79255194 AACCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAA
1 AACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAACACAA
79255258 ATGCCTTCGGGTATT
66 ATGCCTTCGGGTATT
* * *
79255273 AGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAACAC
1 A-ACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAACAC
* *
79255336 AATTGCCTTCGGGTCTT
64 AAATGCCTTCGGGTATT
** * ** * *
79255353 AACCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 AACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
79255401 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
79 39 0.36
80 64 0.60
81 1 0.01
82 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
AACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAACACAA
ATGCCTTCGGGTATT
Found at i:79257617 original size:80 final size:80
Alignment explanation
Indices: 79257464--79257609 Score: 199
Period size: 79 Copynumber: 1.9 Consensus size: 80
79257454 TTTCCAATCA
* * * *
79257464 AATTCAAATCACTAATTACTTTTCAATCAATATACATTTCAAAAACTCACATATTTTCTTCATTC
1 AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAAAACTCACATATATTCATAATTC
79257529 AATTTAATTTGATTC
66 AATTTAATTTGATTC
* * * *
79257544 AATTCAAATCACT-TTTAGTTTCCAATCAATATAC-TTTCAAATATTCACATA-ATTCATAATTC
1 AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAAAACTCACATATATTCATAATTC
79257606 AATT
66 AATT
79257610 ACTTAATTCA
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
77 12 0.21
78 15 0.26
79 18 0.31
80 13 0.22
ACGTcount: A:0.38, C:0.18, G:0.01, T:0.42
Consensus pattern (80 bp):
AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAAAACTCACATATATTCATAATTC
AATTTAATTTGATTC
Found at i:79258458 original size:14 final size:16
Alignment explanation
Indices: 79258439--79258471 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
79258429 TACTCTCTCT
79258439 ATATAATA-ATA-ATA
1 ATATAATATATATATA
79258453 ATATAATATATATATA
1 ATATAATATATATATA
79258469 ATA
1 ATA
79258472 AAACATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 3 0.18
16 6 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATAATATATATATA
Found at i:79258470 original size:25 final size:25
Alignment explanation
Indices: 79258438--79258486 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
79258428 TTACTCTCTC
*
79258438 TATATAATAATA-ATAATATAATATA
1 TATATAATAAAACATAATA-AATATA
79258463 TATATAATAAAACATAATAAATAT
1 TATATAATAAAACATAATAAATAT
79258487 CTTTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (25 bp):
TATATAATAAAACATAATAAATATA
Found at i:79258486 original size:19 final size:22
Alignment explanation
Indices: 79258438--79258486 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
79258428 TTACTCTCTC
*
79258438 TATATA-ATAATAATAATATAA
1 TATATATATAATAATAACATAA
79258459 TATATATATAATAA-AACATAA
1 TATATATATAATAATAACATAA
*
79258480 TAAATAT
1 TATATAT
79258487 CTTTATTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
TATATATATAATAATAACATAA
Found at i:79258566 original size:18 final size:18
Alignment explanation
Indices: 79258543--79258578 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
79258533 GATTAATCGC
79258543 CTTTTGGTTTAATTCCCT
1 CTTTTGGTTTAATTCCCT
*
79258561 CTTTTGGTTTAGTTCCCT
1 CTTTTGGTTTAATTCCCT
79258579 TTTAGTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.08, C:0.22, G:0.14, T:0.56
Consensus pattern (18 bp):
CTTTTGGTTTAATTCCCT
Found at i:79270950 original size:22 final size:22
Alignment explanation
Indices: 79270922--79270967 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
79270912 GAAAGATATA
79270922 TATATATTATAAATTGATGGAG
1 TATATATTATAAATTGATGGAG
79270944 TATATATTATAAATTGATGGAG
1 TATATATTATAAATTGATGGAG
79270966 TA
1 TA
79270968 GTTGGGATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (22 bp):
TATATATTATAAATTGATGGAG
Found at i:79273552 original size:19 final size:19
Alignment explanation
Indices: 79273528--79273588 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
79273518 GACCAAGCCA
79273528 TGTGTCACAGCCTAGACCG
1 TGTGTCACAGCCTAGACCG
* **
79273547 TGTGTCATAG-CTCAGACAA
1 TGTGTCACAGCCT-AGACCG
*
79273566 TGTGTCACAACCTAGACCG
1 TGTGTCACAGCCTAGACCG
79273585 TGTG
1 TGTG
79273589 GACATTTGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
18 2 0.06
19 29 0.88
20 2 0.06
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (19 bp):
TGTGTCACAGCCTAGACCG
Found at i:79275479 original size:48 final size:48
Alignment explanation
Indices: 79275408--79275504 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
79275398 ACAAAATGTA
79275408 GACGACTACTTCGGCTTAGTCCACATGCATTGTTTTTCCCCGGTCTAG
1 GACGACTACTTCGGCTTAGTCCACATGCATTGTTTTTCCCCGGTCTAG
*
79275456 GACGACTAGTTCGGCTTAGTCCACATGCATTGTTTTTCCCCGGTCTAG
1 GACGACTACTTCGGCTTAGTCCACATGCATTGTTTTTCCCCGGTCTAG
79275504 G
1 G
79275505 CCTGAATTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.16, C:0.28, G:0.23, T:0.33
Consensus pattern (48 bp):
GACGACTACTTCGGCTTAGTCCACATGCATTGTTTTTCCCCGGTCTAG
Found at i:79279994 original size:28 final size:29
Alignment explanation
Indices: 79279904--79280034 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
79279894 CCTTCGAGCT
** * * *
79279904 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * * *
79279933 TGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
79279962 TGCACACTTAGTGCCTTATA-TTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
79279990 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
79280019 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
79280035 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 26 0.29
29 63 0.71
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:79280002 original size:57 final size:57
Alignment explanation
Indices: 79279875--79280033 Score: 165
Period size: 57 Copynumber: 2.8 Consensus size: 57
79279865 AATTTAAGCC
* *** * * ** * * *
79279875 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCTTA-TATTCCAGCA
* * * *
79279933 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCTTATATTCCAGCA
*
79279990 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
79280034 AATCTCGTCA
Statistics
Matches: 82, Mismatches: 19, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
57 47 0.57
58 35 0.43
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (57 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCTTATATTCCAGCA
Found at i:79284547 original size:40 final size:40
Alignment explanation
Indices: 79284498--79284705 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
79284488 TCTTCGGAAT
* * *
79284498 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
79284537 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
79284577 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
79284617 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
79284657 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
79284697 TTAGCCCGG
1 TTAGCCCGG
79284706 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:79292580 original size:40 final size:39
Alignment explanation
Indices: 79292516--79292722 Score: 188
Period size: 40 Copynumber: 5.2 Consensus size: 39
79292506 TCTTCAGAAT
* **
79292516 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** *
79292555 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
79292595 TTAGCCCGGATATAACAACTCGCACGAATGCCTT-GGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * *
79292634 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
* * *
79292674 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
79292714 TTAGCCCGG
1 TTAGCCCGG
79292723 GTATCATTCA
Statistics
Matches: 145, Mismatches: 18, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
39 37 0.26
40 106 0.73
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:79292663 original size:79 final size:78
Alignment explanation
Indices: 79292516--79292722 Score: 238
Period size: 79 Copynumber: 2.6 Consensus size: 78
79292506 TCTTCAGAAT
* * * ** *
79292516 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCAC
*
79292580 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGAC
* * *
79292595 TTAGCCCGGATATAACAACTCGCACGAATGCCTT-GGGTCTTAGCCCGGATATAATCACTAGCAT
1 TTAGCCCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCAC
79292659 AAATGCCTTCGGGAC
64 AAATGCCTTCGGGAC
* *
79292674 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
79292723 GTATCATTCA
Statistics
Matches: 109, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
79 71 0.65
80 36 0.33
81 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAA
ATGCCTTCGGGAC
Found at i:79294558 original size:49 final size:49
Alignment explanation
Indices: 79294499--79294620 Score: 185
Period size: 49 Copynumber: 2.5 Consensus size: 49
79294489 AAGTCGATTT
79294499 CATGTCCCAGACAGGTCTTACACTGACT-TTCATATATCGAG-GCCAATGC
1 CATGTCCCAGACAGGTCTTACACTGACTCTT-ATATATCG-GTGCCAATGC
* *
79294548 CATGTCCCAGATAGGTCTTACACTGACTCTTATCTATCGGTGCCAATGC
1 CATGTCCCAGACAGGTCTTACACTGACTCTTATATATCGGTGCCAATGC
*
79294597 CATGTCCTAGACAGGTCTTACACT
1 CATGTCCCAGACAGGTCTTACACT
79294621 AACACACAAC
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
48 1 0.01
49 64 0.96
50 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (49 bp):
CATGTCCCAGACAGGTCTTACACTGACTCTTATATATCGGTGCCAATGC
Found at i:79300975 original size:48 final size:47
Alignment explanation
Indices: 79300838--79301158 Score: 235
Period size: 48 Copynumber: 6.7 Consensus size: 47
79300828 GATATGTGTA
* **
79300838 CTAGTCTAAGA-CATGTCTGGGACAT-GCATCGGCCATATTATGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TAAGATGAGAG
* * * * * * *
79300884 CCAATGTAAGACCATGTCTGGGACATCGTATCAGCATTGAGATGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTAAGATGAGAG
* *
79300932 CTAGTTTAAGACCATGTCTGGGACATGACATCGGCCTCAAGATGTA-AG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-AAGATG-AGAG
* * * * *
79300980 CCAGTGTAAGAGCATGTCTGGGACATGACATCGG-CTATGA-GATGTG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAAGATGA-GAG
* * *
79301026 -TCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACAGATATATGAGAG
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-C-TA-AGATGAGAG
* * * * *
79301076 CCAGTGTAAGACCATGTCTGAGACATGGCGTCGGCCT-CGATTACGATAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAAGA-T--GAGAG
*
79301125 -TCAGTGTAAGACCATGTCTAGGACATGGCATCGG
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGG
79301159 TATCCTACCT
Statistics
Matches: 214, Mismatches: 43, Indels: 33
0.74 0.15 0.11
Matches are distributed among these distances:
44 1 0.00
45 1 0.00
46 42 0.20
47 18 0.08
48 81 0.38
49 36 0.17
50 33 0.15
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (47 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAAGATGAGAG
Found at i:79301101 original size:144 final size:143
Alignment explanation
Indices: 79300844--79301158 Score: 334
Period size: 144 Copynumber: 2.2 Consensus size: 143
79300834 TGTACTAGTC
* *
79300844 TAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCCAATGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCGGCCATATGATGAGAGCCAATGTAAGACCATGTCTAGGACA
* ** * * *
79300909 TCGTATCAGCATTGAGATGAGAGCTAGTTTAAGACCATGTCTGGGACATGACATCGGCCTC-AAG
66 TCGCATCAGCACAGAGATGAGAGCCAGTGTAAGACCATGTCTGAGACATGACATCGGCCTCGAAG
*
79300973 ATG-TAAGCCAGTG
131 ACGAT-AGCCAGTG
* * *
79300986 TAAGAGCATGTCTGGGACATGACATCGG-C-TATGA-GATGTGTCAGTGTAAGACCATGTCTAGG
1 TAAGA-CATGTCTGGGACATG-CATCGGCCATATGATGA-GAGCCAATGTAAGACCATGTCTAGG
* * * * *
79301048 ACATGGCATCGGCACAGATATATGAGAGCCAGTGTAAGACCATGTCTGAGACATGGCGTCGGCCT
63 ACATCGCATCAGCACAG--AGATGAGAGCCAGTGTAAGACCATGTCTGAGACATGACATCGGCCT
** *
79301113 CGATTACGATAGTCAGTG
126 CGAAGACGATAGCCAGTG
*
79301131 TAAGACCATGTCTAGGACATGGCATCGG
1 TAAGA-CATGTCTGGGACAT-GCATCGG
79301159 TATCCTACCT
Statistics
Matches: 143, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
141 2 0.01
142 42 0.29
143 16 0.11
144 47 0.33
145 34 0.24
146 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (143 bp):
TAAGACATGTCTGGGACATGCATCGGCCATATGATGAGAGCCAATGTAAGACCATGTCTAGGACA
TCGCATCAGCACAGAGATGAGAGCCAGTGTAAGACCATGTCTGAGACATGACATCGGCCTCGAAG
ACGATAGCCAGTG
Found at i:79301110 original size:96 final size:95
Alignment explanation
Indices: 79300844--79301158 Score: 329
Period size: 96 Copynumber: 3.3 Consensus size: 95
79300834 TGTACTAGTC
* * *
79300844 TAAGA-CATGTCTGGGACAT-GCATCGGCCATAT-TATGAGAGCCAATGTAAGACCATGTCTGGG
1 TAAGACCATGTCTAGGACATGGCATCGGCCACATATATGAGAGCCAGTGTAAGACCATGTCTGGG
* * * * *
79300906 ACATCGTATCAGC-ATTGAGATGAGAGCTAGTT
66 ACATGGCATCGGCTA-TGAGATGAG-TC-AGTG
* * * * *
79300938 TAAGACCATGTCTGGGACATGACATCGGCCTCA-AGATGTA-AGCCAGTGTAAGAGCATGTCTGG
1 TAAGACCATGTCTAGGACATGGCATCGGCCACATATATG-AGAGCCAGTGTAAGACCATGTCTGG
* *
79301001 GACATGACATCGGCTATGAGATGTGTCAGTG
65 GACATGGCATCGGCTATGAGATGAGTCAGTG
* *
79301032 TAAGACCATGTCTAGGACATGGCATCGGCACAGATATATGAGAGCCAGTGTAAGACCATGTCTGA
1 TAAGACCATGTCTAGGACATGGCATCGGC-CACATATATGAGAGCCAGTGTAAGACCATGTCTGG
* *
79301097 GACATGGCGTCGGCCTCGATTACGAT-AGTCAGTG
65 GACATGGCATCGG-CT--ATGA-GATGAGTCAGTG
79301131 TAAGACCATGTCTAGGACATGGCATCGG
1 TAAGACCATGTCTAGGACATGGCATCGG
79301159 TATCCTACCT
Statistics
Matches: 185, Mismatches: 24, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
94 35 0.19
95 18 0.10
96 87 0.47
97 4 0.02
99 38 0.21
100 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (95 bp):
TAAGACCATGTCTAGGACATGGCATCGGCCACATATATGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGGCTATGAGATGAGTCAGTG
Found at i:79303811 original size:13 final size:13
Alignment explanation
Indices: 79303793--79303819 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79303783 GGGGTTGTTT
79303793 ATTAAACTAATTA
1 ATTAAACTAATTA
79303806 ATTAAACTAATTA
1 ATTAAACTAATTA
79303819 A
1 A
79303820 CTAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:79303816 original size:9 final size:9
Alignment explanation
Indices: 79303804--79303832 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
79303794 TTAAACTAAT
79303804 TAATTAAAC
1 TAATTAAAC
79303813 TAATT-AAC
1 TAATTAAAC
79303821 TAATTAAAC
1 TAATTAAAC
79303830 TAA
1 TAA
79303833 AGCAAAGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (9 bp):
TAATTAAAC
Found at i:79306260 original size:43 final size:43
Alignment explanation
Indices: 79306194--79306280 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
79306184 GTTACATGAA
* *
79306194 TCGCATCCATCATGAACTTGGACCACTCAACGAGCTCGAATGC
1 TCGCATCCATAATGAACTCGGACCACTCAACGAGCTCGAATGC
* *
79306237 TCGCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCACTCAACGAGCTCGAATGC
79306280 T
1 T
79306281 ACATACCTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGGACCACTCAACGAGCTCGAATGC
Found at i:79310716 original size:40 final size:40
Alignment explanation
Indices: 79310679--79310906 Score: 332
Period size: 40 Copynumber: 5.7 Consensus size: 40
79310669 GCTACTCGTT
* *
79310679 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
79310719 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
79310759 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
79310799 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
79310839 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
* * *
79310880 CAAAAGCCTTCGAGACTTAGCCCGGAT
1 CAAATGCCTTCGGGACTTAACCCGGAT
79310907 ATCATTCGAA
Statistics
Matches: 176, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
40 146 0.83
41 30 0.17
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:79317697 original size:46 final size:46
Alignment explanation
Indices: 79317645--79317820 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
79317635 TATTTGGGCA
*
79317645 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
79317691 TCCGAGCTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
79317736 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * **
79317784 CCCAAGCTCATTGAGTTGAATCCGAGTAAACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79317821 CGGGTTTCAT
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79317810 original size:93 final size:93
Alignment explanation
Indices: 79317641--79317810 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
79317631 AGGATATTTG
* * * * *
79317641 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCAAGCTCATTGAG
* *
79317706 TTGAGTTCGAGTTCGTGAGATGTAACTA
66 TTGAATCCGAGTTCGTGAGATGTAACTA
*
79317734 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCAAGCTCATTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCAAGCTCATTGAG
79317799 TTGAATCCGAGT
66 TTGAATCCGAGT
79317811 AAACTTATGG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCAAGCTCATTGAG
TTGAATCCGAGTTCGTGAGATGTAACTA
Found at i:79326127 original size:40 final size:40
Alignment explanation
Indices: 79325962--79326129 Score: 132
Period size: 40 Copynumber: 4.2 Consensus size: 40
79325952 AAATTGAATG
*
79325962 ATATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAA--ATT
1 ATATCCGGGCTAAGA-CCCGAAGGC-ATT-TG-TGCGAATGATT
* * * * * **
79326002 ATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGATT
* * *
79326042 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGATT
*
79326082 TTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGATT
79326122 ATATCCGG
1 ATATCCGG
79326130 TTATATTCCG
Statistics
Matches: 98, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
37 1 0.01
38 3 0.03
39 4 0.04
40 89 0.91
41 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGATT
Found at i:79335756 original size:17 final size:17
Alignment explanation
Indices: 79335734--79335768 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
79335724 CTATATTTAA
79335734 AATTTTACCCATGGATG
1 AATTTTACCCATGGATG
79335751 AATTTTACCCATGGATG
1 AATTTTACCCATGGATG
79335768 A
1 A
79335769 TATGTATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (17 bp):
AATTTTACCCATGGATG
Found at i:79336525 original size:46 final size:46
Alignment explanation
Indices: 79336453--79336628 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
79336443 TATTTGGGCA
*
79336453 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79336499 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
79336544 CATCCAAGGTCGTTGAGTTGAGTCCGAGTGCACTTATGGATGCGAAAG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79336592 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79336629 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.57
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79336608 original size:93 final size:93
Alignment explanation
Indices: 79336449--79336621 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
79336439 AGGATATTTG
* * * * * *
79336449 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
1 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTGCACTTATGGATGCGAAAGCCCGAGCTCATTGAG
79336514 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
79336542 GGCATCCAAGGTCGTTGAGTTGAGTCCGAGTGCACTTATGGATGCGAAAGCCCGAGCTCATTGAG
1 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTGCACTTATGGATGCGAAAGCCCGAGCTCATTGAG
79336607 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
79336622 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.28
Consensus pattern (93 bp):
GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTGCACTTATGGATGCGAAAGCCCGAGCTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:79343476 original size:20 final size:21
Alignment explanation
Indices: 79343451--79343490 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
79343441 CACTTAAAAC
79343451 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
79343471 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
79343491 CTCTGTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.30, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:79344767 original size:49 final size:48
Alignment explanation
Indices: 79344704--79344868 Score: 165
Period size: 49 Copynumber: 3.5 Consensus size: 48
79344694 GTCGATGTCG
* *
79344704 TGTCCCAGATAGGTCTTACACTAACTTTCATATATTGAGGCTGATGCCA
1 TGTCCCAGACAGGTCTTACACTAACTTTCATATCTTGAGGCTGATG-CA
* * ** *
79344753 TGTCCTAGACAGGTCTTACACTAGCTTGT-ATATCCCGAGGCTGATTCA
1 TGTCCCAGACAGGTCTTACACTAACTT-TCATATCTTGAGGCTGATGCA
* * * * * *
79344801 TGTTCCAGACATGTCTTACACTAAC--TCTTGTCTTAATGCTGATGCA
1 TGTCCCAGACAGGTCTTACACTAACTTTCATATCTTGAGGCTGATGCA
*
79344847 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACAGGTCTTACACT
79344869 GGCTCACATA
Statistics
Matches: 95, Mismatches: 19, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
45 1 0.01
46 33 0.35
48 23 0.24
49 37 0.39
50 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (48 bp):
TGTCCCAGACAGGTCTTACACTAACTTTCATATCTTGAGGCTGATGCA
Found at i:79346663 original size:3 final size:3
Alignment explanation
Indices: 79346655--79346708 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
79346645 AGATATTTAC
79346655 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
79346703 TTA TTA
1 TTA TTA
79346709 ATTGAGATAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:79348899 original size:20 final size:21
Alignment explanation
Indices: 79348874--79348970 Score: 148
Period size: 20 Copynumber: 4.8 Consensus size: 21
79348864 GCCCACGGGT
79348874 AGGCCACACGGGCATGTTC-C
1 AGGCCACACGGGCATGTTCTC
*
79348894 AGGCCACACGGGCATG-TCTT
1 AGGCCACACGGGCATGTTCTC
*
79348914 AGGCCACATGGGCATGTTC-C
1 AGGCCACACGGGCATGTTCTC
79348934 AGGCCACACGGGCATG-TCTC
1 AGGCCACACGGGCATGTTCTC
79348954 AGGCCACACGGGCATGT
1 AGGCCACACGGGCATGT
79348971 GCCCCTATTC
Statistics
Matches: 69, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.06
20 63 0.91
21 2 0.03
ACGTcount: A:0.21, C:0.32, G:0.31, T:0.16
Consensus pattern (21 bp):
AGGCCACACGGGCATGTTCTC
Found at i:79348917 original size:40 final size:40
Alignment explanation
Indices: 79348873--79348970 Score: 178
Period size: 40 Copynumber: 2.5 Consensus size: 40
79348863 TGCCCACGGG
79348873 TAGGCCACACGGGCATGTTCCAGGCCACACGGGCATGTCT
1 TAGGCCACACGGGCATGTTCCAGGCCACACGGGCATGTCT
*
79348913 TAGGCCACATGGGCATGTTCCAGGCCACACGGGCATGTCT
1 TAGGCCACACGGGCATGTTCCAGGCCACACGGGCATGTCT
*
79348953 CAGGCCACACGGGCATGT
1 TAGGCCACACGGGCATGT
79348971 GCCCCTATTC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (40 bp):
TAGGCCACACGGGCATGTTCCAGGCCACACGGGCATGTCT
Found at i:79351468 original size:16 final size:16
Alignment explanation
Indices: 79351449--79351479 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79351439 TTTTCTTCTT
*
79351449 TTTCTCTGCTCCTTTC
1 TTTCTCTGCTACTTTC
79351465 TTTCTCTGCTACTTT
1 TTTCTCTGCTACTTT
79351480 TTACTTTGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.32, G:0.06, T:0.58
Consensus pattern (16 bp):
TTTCTCTGCTACTTTC
Found at i:79352113 original size:18 final size:18
Alignment explanation
Indices: 79352072--79352117 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
79352062 GGGCCAGGCC
*
79352072 ATGTGGG-CCACACGGGT
1 ATGTGGGCCCACACGAGT
* *
79352089 GTGTGGGCCCATACGAGT
1 ATGTGGGCCCACACGAGT
79352107 ATGTGGGCCCA
1 ATGTGGGCCCA
79352118 AAATTTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.17, C:0.24, G:0.39, T:0.20
Consensus pattern (18 bp):
ATGTGGGCCCACACGAGT
Found at i:79357254 original size:2 final size:2
Alignment explanation
Indices: 79357247--79357274 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
79357237 ATATTTCCTT
79357247 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79357275 AAATTAAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:79358191 original size:2 final size:2
Alignment explanation
Indices: 79358184--79358214 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
79358174 ATAGGAGAAA
79358184 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79358215 AATTACTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79359843 original size:8 final size:9
Alignment explanation
Indices: 79359810--79359842 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
79359800 AGTCTATGTA
79359810 AAAAAAATT
1 AAAAAAATT
79359819 AAAAAAATT
1 AAAAAAATT
79359828 AAAAAAATT
1 AAAAAAATT
79359837 AAAAAA
1 AAAAAA
79359843 TATATAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAAAAATT
Found at i:79360930 original size:10 final size:10
Alignment explanation
Indices: 79360915--79360964 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
79360905 TAATTTTAGG
79360915 ATTTAT-TTT
1 ATTTATCTTT
79360924 CATTTATCTTT
1 -ATTTATCTTT
*
79360935 AATTATCTTT
1 ATTTATCTTT
79360945 ATTTAT-TTGT
1 ATTTATCTT-T
*
79360955 ACTTATCTTT
1 ATTTATCTTT
79360965 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:79362295 original size:20 final size:21
Alignment explanation
Indices: 79362272--79362312 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
79362262 TTGTAAATTG
*
79362272 AAAGTTTA-TGATAGAAAATA
1 AAAGGTTATTGATAGAAAATA
*
79362292 AAAGGTTATTGATAGAGAATA
1 AAAGGTTATTGATAGAAAATA
79362313 GAGAAATCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (21 bp):
AAAGGTTATTGATAGAAAATA
Found at i:79363243 original size:31 final size:33
Alignment explanation
Indices: 79363208--79363268 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
79363198 TTGAAACGAC
79363208 ATACTTT-T-TGTACCATTTGAAAAGGAAAGGT
1 ATACTTTGTGTGTACCATTTGAAAAGGAAAGGT
79363239 ATACTTTGTGTGTACCATTTGAAAAGGAAA
1 ATACTTTGTGTGTACCATTTGAAAAGGAAA
79363269 TGTACACCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 7 0.25
32 1 0.04
33 20 0.71
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (33 bp):
ATACTTTGTGTGTACCATTTGAAAAGGAAAGGT
Found at i:79363285 original size:33 final size:33
Alignment explanation
Indices: 79363216--79363302 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 33
79363206 ACATACTTTT
* * * * *
79363216 TGTACCATTTGAAAAGGAAAGGTATACTTTGTG
1 TGTACCATTTGAAAAGGAAATGTACACCTCGAG
79363249 TGTACCATTTGAAAAGGAAATGTACACCTCGAG
1 TGTACCATTTGAAAAGGAAATGTACACCTCGAG
* * *
79363282 TGTACTACTGGAAAAGGAAAT
1 TGTACCATTTGAAAAGGAAAT
79363303 ATCCATTGAT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (33 bp):
TGTACCATTTGAAAAGGAAATGTACACCTCGAG
Found at i:79367686 original size:40 final size:39
Alignment explanation
Indices: 79367641--79367770 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
79367631 CGGAATACAA
79367641 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
79367681 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
79367721 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
79367761 CCGGATATAA
1 CCGGATATAA
79367771 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:79370185 original size:39 final size:39
Alignment explanation
Indices: 79370155--79370239 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 39
79370145 CGGAATACAA
* **
79370155 CCGGATATAACCACGTGCACGAATGCCTTCGGTCTTAGC
1 CCGGATAGAACCACGTGCACGAATGCCTTCGGTAATAGC
* * **
79370194 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCACGTGCACGAATGCCTTC-GGTAATAGC
79370234 CCGGAT
1 CCGGAT
79370240 GTAGCCGCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 27 0.64
40 15 0.36
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CCGGATAGAACCACGTGCACGAATGCCTTCGGTAATAGC
Found at i:79370261 original size:40 final size:41
Alignment explanation
Indices: 79370171--79370279 Score: 138
Period size: 40 Copynumber: 2.7 Consensus size: 41
79370161 ATAACCACGT
*
79370171 GCACGAATGCCTTC-GGTCTTAGCCCGGA-TAGAACGACTT
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
*
79370210 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-CCG-CTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTA
*
79370250 GCAC-AATTGCCTTCGGGTCTTAACCCGGAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT
79370280 ATAATTTCCA
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
39 16 0.25
40 42 0.67
41 2 0.03
42 3 0.05
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
Found at i:79373258 original size:28 final size:28
Alignment explanation
Indices: 79373197--79373294 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
79373187 TCACAAATTG
** * *
79373197 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
79373226 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
79373254 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
79373282 GCACTAAGTGTGC
1 GCACTAAGTGTGC
79373295 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:79380930 original size:28 final size:28
Alignment explanation
Indices: 79380869--79380966 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
79380859 TCACAAATTG
** * *
79380869 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
79380898 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
79380926 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
79380954 GCACTAAGTGTGC
1 GCACTAAGTGTGC
79380967 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:79383888 original size:29 final size:29
Alignment explanation
Indices: 79383856--79383928 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
79383846 CTTCGAGCTC
*
79383856 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
79383885 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
79383914 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
79383929 ATCTCATCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:79392413 original size:13 final size:13
Alignment explanation
Indices: 79392395--79392419 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79392385 GTTTAACTAA
79392395 TTAATTAGTTTAG
1 TTAATTAGTTTAG
79392408 TTAATTAGTTTA
1 TTAATTAGTTTA
79392420 ATAAACAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTAATTAGTTTAG
Found at i:79397855 original size:6 final size:6
Alignment explanation
Indices: 79397844--79397894 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
79397834 TCCTCGTATC
* * *
79397844 TTTTTA TTTTTA TTTTTA TTTTTA TTTGTA CTTTTA TTTTTA TTTTCA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
79397892 TTT
1 TTT
79397895 CAATTTTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:79397900 original size:18 final size:16
Alignment explanation
Indices: 79397844--79397904 Score: 59
Period size: 18 Copynumber: 3.5 Consensus size: 16
79397834 TCCTCGTATC
79397844 TTTTTATTTTTATTTTTA
1 TTTTTA-TTTTA-TTTTA
79397862 TTTTTATTTGTACTTTTA
1 TTTTTATTT-TA-TTTTA
*
79397880 TTTTTATTTTCATTTCA
1 TTTTTATTTT-ATTTTA
*
79397897 ATTTTATT
1 TTTTTATT
79397905 ATTTTCTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
17 15 0.39
18 23 0.61
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTTTATTTTATTTTA
Found at i:79400786 original size:17 final size:17
Alignment explanation
Indices: 79400764--79400796 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
79400754 TCTCTTTACT
79400764 TTAGTTTAATTAATTAA
1 TTAGTTTAATTAATTAA
*
79400781 TTAGTTTAGTTAATTA
1 TTAGTTTAATTAATTA
79400797 GTTTAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (17 bp):
TTAGTTTAATTAATTAA
Found at i:79400795 original size:13 final size:13
Alignment explanation
Indices: 79400777--79400801 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79400767 GTTTAATTAA
79400777 TTAATTAGTTTAG
1 TTAATTAGTTTAG
79400790 TTAATTAGTTTA
1 TTAATTAGTTTA
79400802 ATAAACAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTAATTAGTTTAG
Found at i:79406613 original size:29 final size:29
Alignment explanation
Indices: 79406580--79406711 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
79406570 GTGACGAGAT
79406580 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
79406609 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
79406638 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
79406667 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
79406696 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79406712 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:79416780 original size:46 final size:46
Alignment explanation
Indices: 79416730--79416905 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
79416720 TGGTTGAGCA
79416730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79416776 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
79416821 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79416869 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79416906 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79416886 original size:93 final size:93
Alignment explanation
Indices: 79416727--79416898 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
79416717 GGATGGTTGA
* *
79416727 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79416792 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
79416820 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79416885 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
79416899 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79421284 original size:40 final size:40
Alignment explanation
Indices: 79421221--79421471 Score: 364
Period size: 40 Copynumber: 6.3 Consensus size: 40
79421211 ATTCGGATTG
79421221 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
79421260 ATATCCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* **
79421300 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
79421340 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
79421380 ATAACCGAGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
79421420 ATAACCGGGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
79421460 ATATCC-GGCTAA
1 ATAACCGGGCTAA
79421472 ACCTCGAGGT
Statistics
Matches: 193, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 21 0.11
40 172 0.89
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:79428121 original size:26 final size:25
Alignment explanation
Indices: 79428078--79428126 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
79428068 TATAATTATG
*
79428078 TAGATTCACATGAAAGATTAAATAGT
1 TAGATTCAAATGAAAGA-TAAATAGT
**
79428104 TAGATTCAAATGTGAGATAAATA
1 TAGATTCAAATGAAAGATAAATA
79428127 TGCTTTGATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 6 0.30
26 14 0.70
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.31
Consensus pattern (25 bp):
TAGATTCAAATGAAAGATAAATAGT
Found at i:79436271 original size:40 final size:40
Alignment explanation
Indices: 79436216--79436437 Score: 315
Period size: 40 Copynumber: 5.6 Consensus size: 40
79436206 TATTCGAATG
79436216 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
79436256 ATATCCAGGCTAAGT-CCTAGAGGCATTTCTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGA-AGGCATTTGTGCTATTGACT
*
79436296 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
79436336 ATATCCGGGCTAAGTCGCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
79436376 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
79436416 ATATCC-GGCTAAATCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
79436438 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 16 0.10
40 140 0.86
41 6 0.04
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:79444227 original size:40 final size:40
Alignment explanation
Indices: 79444172--79444393 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
79444162 TATTCGAATG
79444172 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
79444212 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* ** *
79444252 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
79444292 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
79444332 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
79444372 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
79444394 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 14 0.08
40 148 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:79450457 original size:45 final size:44
Alignment explanation
Indices: 79450371--79450457 Score: 120
Period size: 45 Copynumber: 2.0 Consensus size: 44
79450361 ATATGTAATT
* * *
79450371 TGAACTCCTTGAGTTGTGTTTGAGTTCATGATATATGTGACATC
1 TGAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATC
* *
79450415 TGAACTCATTGAGTTGTGGTCTGAGTTCGTGATATGTATGACA
1 TGAACTCATTGAGTTGT-GTCTGAGTTCATGATATATATGACA
79450458 CATGTTTTTG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 16 0.43
45 21 0.57
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.39
Consensus pattern (44 bp):
TGAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATC
Found at i:79457426 original size:29 final size:29
Alignment explanation
Indices: 79457387--79457466 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
79457377 CTTAATAATC
*
79457387 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
79457417 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
79457446 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
79457467 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:79465316 original size:29 final size:29
Alignment explanation
Indices: 79465277--79465356 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
79465267 CTTAATAATC
*
79465277 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
79465307 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
79465336 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
79465357 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:79470056 original size:27 final size:27
Alignment explanation
Indices: 79470026--79470630 Score: 597
Period size: 27 Copynumber: 22.7 Consensus size: 27
79470016 TAATAAAGAG
*
79470026 AAATTGCTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
79470053 AAATTACCCACATACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79470080 AAATTA-TCAAAATACCCTC-AATTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
79470106 AAATTACTAAAAAACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
79470133 AAATAACCGAAATACCTTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* **
79470159 AAATTAC-CACAATACCCTTAATTTGTA
1 AAATTACTGA-AATACCCTCGATTTGTA
** * *
79470186 AAATTACCAAAATACCC-CAAATTAGT-
1 AAATTACTGAAATACCCTC-GATTTGTA
** **
79470212 AAATTACCAAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79470239 AAATTACTAAAATGCCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79470266 AAATTACTGAAAAACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
79470292 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79470319 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
79470345 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
79470372 AAATTACCGAAATACCCTC-AATTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
79470398 AAATTA-TTAAGATACCCTCGATTTGTA
1 AAATTACTGAA-ATACCCTCGATTTGTA
* * *
79470425 AATTTACCGAAATACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
79470452 AAATTACTAAAATACCCTC-AATTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79470478 AAATTACTGAAGTACCCTCGATTTGGA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
79470505 AAATTACTGAAATACCCCCAATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
79470532 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79470559 AAATTA-TCGAAATACCATCGATTTGAA
1 AAATTACT-GAAATACCCTCGATTTGTA
** * * *
79470586 AAAAAATTGAAACACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
79470613 AAATTA-TCGAAATACCCT
1 AAATTACT-GAAATACCCT
79470631 TGTAGTGTAA
Statistics
Matches: 475, Mismatches: 85, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
25 3 0.01
26 154 0.32
27 314 0.66
28 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:79470128 original size:53 final size:53
Alignment explanation
Indices: 79470034--79470630 Score: 573
Period size: 53 Copynumber: 11.2 Consensus size: 53
79470024 AGAAATTGCT
* * *
79470034 GAAATACCCTCGATTTGTAAAATTACCCACATACCCCCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-C
* * ** * *
79470088 AAAATACCCTC-AATTGTAAAATTACTAAAAAACCCTCGATTTGTAAAATAACC
1 GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-C
* * **
79470141 GAAATACCTTCGA-TTGTGAAATTACC-ACAATACCCTTAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACCGA-AATACCCTCGATTTGTAAAATTA-C
* * * * **
79470194 AAAATACCC-CAAATTAGT-AAATTACCAAAATACCCTTAATTTGTAAAATTAC
1 GAAATACCCTC-GATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAC
* * * * *
79470246 TAAAATGCCCTCGATTTGTAAAATTACTGAAAAACCCTCGA-TTGTGAAATTAC
1 -GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAC
* *
79470299 TGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGA-TTGTGAAATTAC
1 -GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAC
* * *
79470352 TGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-AATTGTGAAATTAT
1 -GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAC
* * *
79470405 TAAGATACCCTCGATTTGTAAATTTACCGAAATACCCCCGATTTGTAAAATTAC
1 GAA-ATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAC
* * * * * *
79470459 TAAAATACCCTC-AATTGTGAAATTACTGAAGTACCCTCGATTTGGAAAATTAC
1 -GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAC
* * *
79470512 TGAAATACCCCCAATTTGTGAAATTACCGAAATACCCTCGATTTGTAAAATTATC
1 -GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-C
* * ** ** * *
79470567 GAAATACCATCGATTTGAAAAAAAATTGAAACACCCCCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-C
79470621 GAAATACCCT
1 GAAATACCCT
79470631 TGTAGTGTAA
Statistics
Matches: 462, Mismatches: 67, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
52 6 0.01
53 314 0.68
54 139 0.30
55 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (53 bp):
GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAC
Found at i:79470185 original size:80 final size:80
Alignment explanation
Indices: 79470026--79470630 Score: 605
Period size: 80 Copynumber: 7.6 Consensus size: 80
79470016 TAATAAAGAG
* * * * *
79470026 AAATTGCTGAAATACCCTCGATTTGTAAAATTACCCACATACCCCCGATTTGTAAAATTATCAAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-CCAA
*
79470091 ATACCCTC-AATTGTA
65 ATACCCTCGATTTGTA
* * * * *
79470106 AAATTACTAAAAAACCCTCGATTTGTAAAATAACCGAAATACCTTCGA-TTGTGAAATTACCACA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCA-A
**
79470170 ATACCCTTAATTTGTA
65 ATACCCTCGATTTGTA
** * * * ** *
79470186 AAATTACCAAAATACCC-CAAATTAGT-AAATTACCAAAATACCCTTAATTTGTAAAATTACTAA
1 AAATTACTGAAATACCCTC-GATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAC-CA
*
79470249 AATGCCCTCGATTTGTA
64 AATACCCTCGATTTGTA
* * * *
79470266 AAATTACTGAAAAACCCTCGA-TTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAC-CAA
*
79470330 ATACCCTCGA-TTGTG
65 ATACCCTCGATTTGTA
* * **
79470345 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-AATTGTGAAATTATTAAG
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAA-
79470409 ATACCCTCGATTTGTA
65 ATACCCTCGATTTGTA
* * * ** * * *
79470425 AATTTACCGAAATACCCCCGATTTGTAAAATTACTAAAATACCCTC-AATTGTGAAATTACTGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAC-CAA
* *
79470489 GTACCCTCGATTTGGA
65 ATACCCTCGATTTGTA
* * * *
79470505 AAATTACTGAAATACCCCCAATTTGTGAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-CCAA
* *
79470570 ATACCATCGATTTGAA
65 ATACCCTCGATTTGTA
** * * * *
79470586 AAAAAATTGAAACACCCCCGATTTGTAAAATTATCGAAATACCCT
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCT
79470631 TGTAGTGTAA
Statistics
Matches: 439, Mismatches: 73, Indels: 25
0.82 0.14 0.05
Matches are distributed among these distances:
78 4 0.01
79 83 0.19
80 282 0.64
81 69 0.16
82 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (80 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAA
TACCCTCGATTTGTA
Found at i:79473485 original size:28 final size:28
Alignment explanation
Indices: 79473453--79473514 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
79473443 GGGGAAGTAG
*
79473453 TTGGGCAT-GACGGGAGATATGAATGTGA
1 TTGGGC-TGGACGGGACATATGAATGTGA
* *
79473481 TTGGGCTGGATGGGTCATATGAATGTGA
1 TTGGGCTGGACGGGACATATGAATGTGA
79473509 TTGGGC
1 TTGGGC
79473515 CTGATGGACC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 1 0.03
28 29 0.97
ACGTcount: A:0.23, C:0.08, G:0.40, T:0.29
Consensus pattern (28 bp):
TTGGGCTGGACGGGACATATGAATGTGA
Found at i:79473520 original size:28 final size:29
Alignment explanation
Indices: 79473469--79473544 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 29
79473459 ATGACGGGAG
**
79473469 ATATGAATGTGATTGGG-CTGGATGGGTC
1 ATATGAATGTGATTGGGCCTGGATGGACC
79473497 ATATGAATGTGATTGGGCCT-GATGGACC
1 ATATGAATGTGATTGGGCCTGGATGGACC
* * *
79473525 ATGTGAACGAGATTGGGCCT
1 ATATGAATGTGATTGGGCCT
79473545 ACATGGGCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 40 0.95
29 2 0.05
ACGTcount: A:0.24, C:0.12, G:0.36, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTGGGCCTGGATGGACC
Found at i:79473891 original size:27 final size:27
Alignment explanation
Indices: 79473861--79474728 Score: 780
Period size: 27 Copynumber: 32.7 Consensus size: 27
79473851 TAATAAAGAG
*
79473861 AAATTACTGAAATACCCTCGATTTGCA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
79473888 AAATTACCAAAATACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
79473915 AACTTACCGAAATACCCTCAATTT-TG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79473941 AAATTACTGAAATACCTTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* ** * *
79473968 AAA-TCCCAAAAAACTCTCGA-TTGTGA
1 AAATTACTGAAATACCCTCGATTTGT-A
** * *
79473994 AAATTACCAAAATACTCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
79474021 AAATTACCAAAATACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
79474048 AAATTA-TCAAAATACCCTCGA-TCGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
*
79474074 AAATTACTGAAATACACTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
79474101 AAATTAC-CAAAGTACCCTCG-TTTATG
1 AAATTACTGAAA-TACCCTCGATTTGTA
* *
79474127 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79474154 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79474180 AAATTATTGAAATACCTTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79474207 AAATTACCGAAATACCC-CGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79474233 AAATTACTAAAATACCCTCGATTATG--
1 AAATTACTGAAATACCCTCGATT-TGTA
* **
79474259 AAATTACTAAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79474286 AAATTA-TCGAAATACCTTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
79474312 AACTTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79474339 AAATTACCGAAATACCCTCGATTATG--
1 AAATTACTGAAATACCCTCGATT-TGTA
* **
79474365 AAATTACTAAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79474392 AAATTA-TCGAAATACCTTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
79474418 AAGTTACTGAAATACGCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79474445 AAATTACT-AGAATACCCTTGA-TTGTG
1 AAATTACTGA-AATACCCTCGATTTGTA
* *
79474471 AACTTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79474498 AAATTACTGAAATACCC-CTAACTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
79474525 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79474551 AAATTATTGAAGTACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79474578 AAATTA-TTAACATACCC-CGATTT-TG
1 AAATTACTGAA-ATACCCTCGATTTGTA
* **
79474603 AAATAACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79474630 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79474657 AAATTA-TCGAAATAACCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
79474684 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79474711 AATTTA-TCGAAATACCCT
1 AAATTACT-GAAATACCCT
79474729 TGTAGTGTAA
Statistics
Matches: 689, Mismatches: 115, Indels: 74
0.78 0.13 0.08
Matches are distributed among these distances:
25 20 0.03
26 268 0.39
27 392 0.57
28 9 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:79473954 original size:53 final size:53
Alignment explanation
Indices: 79473861--79474728 Score: 691
Period size: 53 Copynumber: 16.3 Consensus size: 53
79473851 TAATAAAGAG
* * ** *
79473861 AAATTACTGAAATACCCTCGATTTGCAAAATTACCAAAATACCCCCAATTTGTA
1 AAATTACCGAAATACCCTCGATTT-TAAAATTACTGAAATACCCTCAATTTGTA
* * * *
79473915 AACTTACCGAAATACCCTCAATTTTGAAATTACTGAAATACCTTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTTAAAATTACTGAAATACCCTCAATTTGTA
* * * * * ** *
79473968 AAA-TCCCAAAAAACTCTCGATTGTGAAAATTACCAAAATACTCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATT-TTAAAATTACTGAAATACCCTCAATTTGTA
* * * * * * *
79474021 AAATTACCAAAATACCCCCAATTTGTAAAATTA-TCAAAATACCCTCGA-TCGTG
1 AAATTACCGAAATACCCTCGATTT-TAAAATTACT-GAAATACCCTCAATTTGTA
* * * * * *
79474074 AAATTACTGAAATACACTCGATTTGTAAAATTAC-CAAAGTACCCTC-GTTTATG
1 AAATTACCGAAATACCCTCGATTT-TAAAATTACTGAAA-TACCCTCAATTTGTA
** * * *
79474127 AAATTACTAAAATACCCTCGACTTGTAAAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGA-TTTTAAAATTACTGAAATACCCTCAATTTGTA
** * * *
79474180 AAATTATTGAAATACCTTCGATTTGTAAAATTACCGAAATACCC-CGATTTGTA
1 AAATTACCGAAATACCCTCGATTT-TAAAATTACTGAAATACCCTCAATTTGTA
** * * * *
79474233 AAATTACTAAAATACCCTCGATTATGAAATTACTAAAATACCCTTAATTTGTA
1 AAATTACCGAAATACCCTCGATTTTAAAATTACTGAAATACCCTCAATTTGTA
* * * * *
79474286 AAATTATCGAAATACCTTCGATTGTGAACTTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTTAAAATTACTGAAATACCCTCAATTTGTA
* * * *
79474339 AAATTACCGAAATACCCTCGATTATGAAATTACTAAAATACCCTTAATTTGTA
1 AAATTACCGAAATACCCTCGATTTTAAAATTACTGAAATACCCTCAATTTGTA
* * * * * *
79474392 AAATTATCGAAATACCTTCGATTGTGAAGTTACTGAAATACGCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTTAAAATTACTGAAATACCCTCAATTTGTA
* * * * * **
79474445 AAATTA-CTAGAATACCCTTGATTGTGAACTTACTGAAATACCCTTGATTTGTA
1 AAATTACCGA-AATACCCTCGATTTTAAAATTACTGAAATACCCTCAATTTGTA
* * * * * *
79474498 AAATTACTGAAATACCC-CTAACTTGTAAAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTC-GA-TTTTAAAATTACTGAAATACCCTCAATTTGTA
** * * * *
79474551 AAATTATTGAAGTACCCTCGATTTGTAAAATTA-TTAACATACCC-CGATTT-TG
1 AAATTACCGAAATACCCTCGATTT-TAAAATTACTGAA-ATACCCTCAATTTGTA
* * * *
79474603 AAATAACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTT-TAAAATTACTGAAATACCCTCAATTTGTA
* * * * *
79474657 AAATTATCGAAATAACCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTT-TAAAATTACTGAAATACCCTCAATTTGTA
* *
79474711 AATTTATCGAAATACCCT
1 AAATTACCGAAATACCCT
79474729 TGTAGTGTAA
Statistics
Matches: 670, Mismatches: 120, Indels: 48
0.80 0.14 0.06
Matches are distributed among these distances:
52 83 0.12
53 439 0.66
54 148 0.22
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (53 bp):
AAATTACCGAAATACCCTCGATTTTAAAATTACTGAAATACCCTCAATTTGTA
Found at i:79474211 original size:159 final size:157
Alignment explanation
Indices: 79473861--79474728 Score: 783
Period size: 159 Copynumber: 5.4 Consensus size: 157
79473851 TAATAAAGAG
* * * * * * *
79473861 AAATTACTGAAATACCCTCGATTTGCAAAATTACCAAAATACCCCCAATTTGTAAACTTACCGAA
1 AAATTACCGAAATA-CCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTACTGAA
* * * * * * *
79473926 ATACCCTCAATTT-TGAAATTACTGAAATACCTTCAATTTGTAAAA-TCCCAAAAAACTCTCGAT
64 ATACCCTCGATTTGTAAAATTACT-AAATACCCTC-ATTTGTAAAATTACTAAAATACCCTCGAT
** * *
79473989 TGTGAAAATTACCAAAATACTCTCAATTTGTA
127 TGT-AAAATTACTGAAATACCCTCGATTTGTA
* * * * * * *
79474021 AAATTACCAAAATACCCCCAATTTGTAAAATTATCAAAATACCCTCGATCGTGAAATTACTGAAA
1 AAATTACCGAAATA-CCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTAAAATTACTGAAA
* * * * *
79474086 TACACTCGATTTGTAAAATTACCAAAGTACCCTCGTTTATGAAATTACTAAAATACCCTCGACTT
65 TACCCTCGATTTGTAAAATTACTAAA-TACCCTCATTTGTAAAATTACTAAAATACCCTCGA-TT
*
79474151 GTAAAATTACTGAAATACCCTCGA-TTGTG
128 GTAAAATTACTGAAATACCCTCGATTTGTA
** *
79474180 AAATTATTGAAATACCTTCGATTTGTAAAATTACCGAAATACCC-CGATTTGTAAAATTACTAAA
1 AAATTACCGAAATACC-TCGATTTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTACTGAA
* * *
79474244 ATACCCTCGATTATG--AAATTACTAAAATACCCTTAATTTGTAAAATTA-TCGAAATACCTTCG
64 ATACCCTCGATT-TGTAAAATTACT-AAATACCC-TCATTTGTAAAATTACT-AAAATACCCTCG
* * *
79474306 ATTGTGAACTTACTGAAATACCCTCAATTTGTA
125 ATTGTAAAATTACTGAAATACCCTCGATTTGTA
** **
79474339 AAATTACCGAAATACCCTCGATTATG--AAATTACTAAAATACCCTTAATTTGTAAAATTA-TCG
1 AAATTACCGAAATA-CCTCGATT-TGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTACT-G
* * * * * *
79474401 AAATACCTTCGA-TTGTGAAGTTACTGAAATACGCTCAATTTGTAAAATTACTAGAATACCCTTG
62 AAATACCCTCGATTTGTAAAATTACT-AAATACCCTC-ATTTGTAAAATTACTAAAATACCCTCG
* * *
79474465 ATTGTGAACTTACTGAAATACCCTTGATTTGTA
125 ATTGTAAAATTACTGAAATACCCTCGATTTGTA
* * * * * * *
79474498 AAATTACTGAAATACCCCTAACTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTATTGAAG
1 AAATTACCGAAATACCTC-GATTTGTAAAATTACCGAAATACCCTCGATTGTAAAATTACTGAAA
* * * *
79474563 TACCCTCGATTTGTAAAATTATTAACATACCC-CGATTT-TGAAATAACCAAAATACCCTCGATT
65 TACCCTCGATTTGTAAAATTACTAA-ATACCCTC-ATTTGTAAAATTACTAAAATACCCTCGA-T
*
79474626 TGTAAAATTACCGAAATACCCTCGATTTGTA
127 TGTAAAATTACTGAAATACCCTCGATTTGTA
* * *
79474657 AAATTATCGAAATAACCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAATTTA-TCGA
1 AAATTACCGAAAT-ACCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTACT-GA
79474721 AATACCCT
63 AATACCCT
79474729 TGTAGTGTAA
Statistics
Matches: 576, Mismatches: 103, Indels: 58
0.78 0.14 0.08
Matches are distributed among these distances:
157 2 0.00
158 82 0.14
159 341 0.59
160 147 0.26
161 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (157 bp):
AAATTACCGAAATACCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTAAAATTACTGAAAT
ACCCTCGATTTGTAAAATTACTAAATACCCTCATTTGTAAAATTACTAAAATACCCTCGATTGTA
AAATTACTGAAATACCCTCGATTTGTA
Found at i:79475475 original size:27 final size:27
Alignment explanation
Indices: 79475445--79476022 Score: 563
Period size: 27 Copynumber: 21.7 Consensus size: 27
79475435 TGATAAAGAG
79475445 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
79475472 AAATTA-TCGAAATACCCTCGA-TTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
79475498 AAATTACTGAAAAACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
79475525 AAATTACCGAAATACCTTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
79475551 AAATTAC-CACAATACCCTTGATATGTA
1 AAATTACTGA-AATACCCTCGATTTGTA
** * * *
79475578 AAATTACCAAAATACCCACAATTAGT-
1 AAATTACTGAAATACCCTCGATTTGTA
** **
79475604 AAATTACCAAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
79475631 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79475658 AAATTACTGAAAAACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
79475684 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79475711 AAATTACTAAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79475737 AAATTACTAAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
79475764 AAATTACCGAAATACCCTC-AATTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
79475790 AAATTA-TTAAGATACCCTCGATTTGTA
1 AAATTACTGAA-ATACCCTCGATTTGTA
*
79475817 AATTTA-TCGAAATACCC-CTGATTTGTA
1 AAATTACT-GAAATACCCTC-GATTTGTA
* * *
79475844 AAATTACTGAAATACCCT-TAATTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* * * * *
79475870 AAACTAATGAAGTACCCTTGATTTGGA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
79475897 AAATTACCGAAATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* * * * *
79475924 AAACTACCGAAATACCCTCAACTTGGA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79475951 AAATTA-TCGAAATACCCTTGATTGGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
79475978 AAATTACAGAAACACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
79476005 AAATTA-TCGAAATACCCT
1 AAATTACT-GAAATACCCT
79476023 TGTAATGTAA
Statistics
Matches: 450, Mismatches: 82, Indels: 38
0.79 0.14 0.07
Matches are distributed among these distances:
25 3 0.01
26 155 0.34
27 288 0.64
28 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:79475525 original size:53 final size:53
Alignment explanation
Indices: 79475445--79476022 Score: 546
Period size: 53 Copynumber: 10.8 Consensus size: 53
79475435 TGATAAAGAG
79475445 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGA-TTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTA-CGAAATACCCTCGATTTGTA
* * *
79475498 AAATTACTGAAAAACCCTCGATTTGTAAAATTACCGAAATACCTTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTAAAATTA-CGAAATACCCTCGATTTGTA
* * * * * * *
79475551 AAATTAC-CACAATACCCTTGATATGTAAAATTACCAAAATACCCACAATTAGT-
1 AAATTACTGA-AATACCCTCGATTTGTAAAATTA-CGAAATACCCTCGATTTGTA
** **
79475604 AAATTACCAAAATACCCTTAATTTGTAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTAC-GAAATACCCTCGATTTGTA
* *
79475658 AAATTACTGAAAAACCCTCGA-TTGTGAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTAC-GAAATACCCTCGATTTGTA
* * * *
79475711 AAATTACTAAAATACCCTCGA-TTGTGAAATTACTAAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTAC-GAAATACCCTCGATTTGTA
* * * **
79475764 AAATTACCGAAATACCCTC-AATTGTGAAATTATTAAGATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACGAA-ATACCCTCGATTTGTA
* * * *
79475817 AATTTA-TCGAAATACCC-CTGATTTGTAAAATTACTGAAATACCCT-TAATTGTG
1 AAATTACT-GAAATACCCTC-GATTTGTAAAATTAC-GAAATACCCTCGATTTGTA
* * * * * * *
79475870 AAACTAATGAAGTACCCTTGATTTGGAAAATTACCGAAATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTAAAATTA-CGAAATACCCTCGATTTGTA
* * * * * * *
79475924 AAACTACCGAAATACCCTCAACTTGGAAAATTATCGAAATACCCTTGATTGGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTA-CGAAATACCCTCGATTTGTA
* * *
79475978 AAATTACAGAAACACCCCCGATTTGTAAAATTATCGAAATACCCT
1 AAATTACTGAAATACCCTCGATTTGTAAAATTA-CGAAATACCCT
79476023 TGTAATGTAA
Statistics
Matches: 440, Mismatches: 70, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
52 6 0.01
53 305 0.69
54 127 0.29
55 2 0.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (53 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACGAAATACCCTCGATTTGTA
Found at i:79475578 original size:80 final size:79
Alignment explanation
Indices: 79475445--79476022 Score: 546
Period size: 80 Copynumber: 7.2 Consensus size: 79
79475435 TGATAAAGAG
* * *
79475445 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTGTAAAATTACTGAAA
1 AAATTACCGAAATACCCTCAATTTGTGAAATTA-CGAAATACCCTCGATTGTAAAATTACTGAAA
79475510 AACCCTCGATTTGTA
65 AACCCTCGATTTGTA
* * * * *
79475525 AAATTACCGAAATACCTTCGA-TTGTGAAATTACCACAATACCCTTGATATGTAAAATTAC-CAA
1 AAATTACCGAAATACCCTCAATTTGTGAAATTACGA-AATACCCTCGAT-TGTAAAATTACTGAA
* * *
79475588 AATACCCACAATTAGT-
64 AA-ACCCTCGATTTGTA
* * *
79475604 AAATTACCAAAATACCCTTAATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAA
1 AAATTACCGAAATACCCTCAATTTGTGAAATTAC-GAAATACCCTCGA-TTGTAAAATTACTGAA
*
79475669 AAACCCTCGA-TTGTG
64 AAACCCTCGATTTGTA
* * * * *
79475684 AAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTGTGAAATTACT-AAA
1 AAATTACCGAAATACCCTCAATTTGTGAAATTAC-GAAATACCCTCGATTGTAAAATTACTGAAA
*
79475748 ATACCCTTGATTTGTA
65 A-ACCCTCGATTTGTA
** *
79475764 AAATTACCGAAATACCCTCAA-TTGTGAAATTATTAAGATACCCTCGATTTGTAAATTTA-TCGA
1 AAATTACCGAAATACCCTCAATTTGTGAAATTACGAA-ATACCCTCGA-TTGTAAAATTACT-GA
*
79475827 AATACCC-CTGATTTGTA
63 AAAACCCTC-GATTTGTA
* * * * * * * *
79475844 AAATTACTGAAATACCCTTAA-TTGTGAAACTAATGAAGTACCCTTGATTTGGAAAATTACCGAA
1 AAATTACCGAAATACCCTCAATTTGTGAAA-TTACGAAATACCCTCGA-TTGTAAAATTACTGAA
* * *
79475908 ATACCCCCGATTTGTG
64 AAACCCTCGATTTGTA
* * * *
79475924 AAACTACCGAAATACCCTCAACTTG-GAAAATTATCGAAATACCCTTGATTGGTAAAATTACAGA
1 AAATTACCGAAATACCCTCAATTTGTG-AAATTA-CGAAATACCCTCGATT-GTAAAATTACTGA
* *
79475988 AACACCCCCGATTTGTA
63 AAAACCCTCGATTTGTA
*
79476005 AAATTATCGAAATACCCT
1 AAATTACCGAAATACCCT
79476023 TGTAATGTAA
Statistics
Matches: 417, Mismatches: 59, Indels: 43
0.80 0.11 0.08
Matches are distributed among these distances:
78 8 0.02
79 85 0.20
80 249 0.60
81 75 0.18
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (79 bp):
AAATTACCGAAATACCCTCAATTTGTGAAATTACGAAATACCCTCGATTGTAAAATTACTGAAAA
ACCCTCGATTTGTA
Found at i:79475766 original size:186 final size:186
Alignment explanation
Indices: 79475445--79475941 Score: 678
Period size: 186 Copynumber: 2.7 Consensus size: 186
79475435 TGATAAAGAG
*
79475445 AAATTACTGAAATACCCTCGATTTGTAAAATTA-TCGAAATACCCTCGATTGTAAAATTACTGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACT-GAAATACCCTCGATTGTGAAATTACTGAA
* * *
79475509 AAACCCTCGATTTGTAAAATTACCGAAATACCTTCGATTGTGAAATTACCACAATACCCTTGATA
65 ATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACCAAAATACCCTTGATA
*
79475574 TGTAAAATTACCAAAATACCCACAATTAGT-AAATTACCAAAATACCCTTAATTTGTA
130 TGTAAAATTACCAAAATACCCACAATT-GTGAAATTACCAAAATACCCTCAATTTGTA
*
79475631 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAAAACCCTCGATTGTGAAATTACTGAAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTGTGAAATTACTGAAA
** * *
79475696 TACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTGTGAAATTACTAAAATACCCTTGATTT
66 TACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACCAAAATACCCTTGATAT
* * ** * *
79475761 GTAAAATTACCGAAATACCCTCAATTGTGAAATTATTAAGATACCCTCGATTTGTA
131 GTAAAATTACCAAAATACCCACAATTGTGAAATTACCAAAATACCCTCAATTTGTA
* ** * *
79475817 AATTTA-TCGAAATACCC-CTGATTTGTAAAATTACTGAAATACCCTTAATTGTGAAACTAATGA
1 AAATTACT-GAAATACCCTC-GATTTGTAAAATTACTGAAATACCCTCGATTGTGAAATTACTGA
* * * * * *
79475880 AGTACCCTTGATTTGGAAAATTACCGAAATACCCCCGATTTGTGAAACTACCGAAATACCCT
64 AATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGTGAAATTACCAAAATACCCT
79475942 CAACTTGGAA
Statistics
Matches: 275, Mismatches: 31, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
185 4 0.01
186 250 0.91
187 21 0.08
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.31
Consensus pattern (186 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTGTGAAATTACTGAAA
TACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACCAAAATACCCTTGATAT
GTAAAATTACCAAAATACCCACAATTGTGAAATTACCAAAATACCCTCAATTTGTA
Found at i:79476053 original size:27 final size:27
Alignment explanation
Indices: 79476001--79476065 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
79475991 ACCCCCGATT
* * *
79476001 TGTAAAATTATCGAAATACCCTTGTAA
1 TGTAAAATGACCGAAATACCCCTGTAA
* *
79476028 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATGACCGAAATACCCCTGTAA
*
79476055 GGTAAAATGAC
1 TGTAAAATGAC
79476066 TGTTTTGCCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCCTGTAA
Found at i:79477750 original size:37 final size:37
Alignment explanation
Indices: 79477691--79477799 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
79477681 AGCTGAGATG
* *
79477691 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79477728 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
79477765 TAATCTCCACACGTAATCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79477800 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79478001 original size:48 final size:48
Alignment explanation
Indices: 79477946--79478156 Score: 377
Period size: 48 Copynumber: 4.4 Consensus size: 48
79477936 ACACATCGCC
*
79477946 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79477994 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
79478042 TACATATTTCACATTTGTCATTCCGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79478090 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79478138 TACATATTTCACATTAGCC
1 TACATATTTCACATTAGCC
79478157 TGTATATCTC
Statistics
Matches: 154, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 154 1.00
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:79478166 original size:30 final size:30
Alignment explanation
Indices: 79478130--79478186 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
79478120 CCACATATAC
79478130 ATATCTCATACATATTTCACATTAGCCTGT
1 ATATCTCATACATATTTCACATTAGCCTGT
79478160 ATATCTCATACATATTTCACATTAGCC
1 ATATCTCATACATATTTCACATTAGCC
79478187 ATTCGGCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
ATATCTCATACATATTTCACATTAGCCTGT
Found at i:79478211 original size:37 final size:37
Alignment explanation
Indices: 79478089--79478211 Score: 115
Period size: 37 Copynumber: 3.2 Consensus size: 37
79478079 TACATATCTC
79478089 ATACATATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACAT
* ** * * * *
79478126 ATACATATCTCATACATATTTCACATTAGCCTGTA-TATC-T
1 ATACATATTTC--ACAT-TAGC-CATTCGGCTTTACCA-CAT
79478166 CATACATATTTCACATTAGCCATTCGGCTTTACCACAT
1 -ATACATATTTCACATTAGCCATTCGGCTTTACCACAT
79478204 ATACATAT
1 ATACATAT
79478212 CTTATGCATA
Statistics
Matches: 64, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
37 28 0.44
38 4 0.06
39 8 0.12
40 4 0.06
41 20 0.31
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (37 bp):
ATACATATTTCACATTAGCCATTCGGCTTTACCACAT
Found at i:79481514 original size:40 final size:40
Alignment explanation
Indices: 79481468--79481789 Score: 518
Period size: 40 Copynumber: 8.1 Consensus size: 40
79481458 CCGAATACAC
* * * *
79481468 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATGT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
79481508 AACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATAC
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
79481548 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
79481588 AGCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
79481628 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
79481668 AACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
79481708 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCTGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
79481748 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
79481788 AT
1 AT
79481790 ATATAACTCT
Statistics
Matches: 261, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 261 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:79483221 original size:37 final size:37
Alignment explanation
Indices: 79483042--79483223 Score: 265
Period size: 37 Copynumber: 4.9 Consensus size: 37
79483032 GCTCAGATGA
* * * * *
79483042 AATCTCTACACGAAGTTATCGGGTCTTACCCAGACAA
1 AATCTCCACACGAAATCATCGGGTCTTACCCGGACAT
***
79483079 AATCTCCACACGTTGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAATCATCGGGTCTTACCCGGACAT
*
79483116 AATCTCCACACGAAATCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGAAATCATCGGGTCTTACCCGGACAT
79483153 AATCTCCACACGAAATCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAATCATCGGGTCTTACCCGGACAT
* *
79483190 AATCTCCACACGTAATCATGGGGTCTTACCCGGA
1 AATCTCCACACGAAATCATCGGGTCTTACCCGGA
79483224 ATATATTTCC
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 132 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGAAATCATCGGGTCTTACCCGGACAT
Found at i:79483428 original size:48 final size:48
Alignment explanation
Indices: 79483370--79483655 Score: 518
Period size: 48 Copynumber: 6.0 Consensus size: 48
79483360 ACACATAGCC
*
79483370 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79483418 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
79483466 TACATATTTCACATTTGTCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79483514 TACATAATTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79483562 TACATAATTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79483610 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
79483656 TATGCATCAA
Statistics
Matches: 230, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 230 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:79486002 original size:40 final size:40
Alignment explanation
Indices: 79485838--79486004 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
79485828 AAATTGAATG
* * **
79485838 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * * **
79485877 ATATCCGGGTTAAGACCCGAAGGCAAATGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
79485917 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAATTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
79485957 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
79485997 ATATCCGG
1 ATATCCGG
79486005 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 16 0.16
40 84 0.82
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:79490878 original size:28 final size:28
Alignment explanation
Indices: 79490846--79490907 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
79490836 GGGGAAGTAG
*
79490846 TTGGGCATGACGGGAGATATGAATGTGA
1 TTGGGCATGACGGGACATATGAATGTGA
* * *
79490874 TTGGGCCTGATGGGTCATATGAATGTGA
1 TTGGGCATGACGGGACATATGAATGTGA
79490902 TTGGGC
1 TTGGGC
79490908 CTGATGGACC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.23, C:0.10, G:0.39, T:0.29
Consensus pattern (28 bp):
TTGGGCATGACGGGACATATGAATGTGA
Found at i:79490908 original size:28 final size:28
Alignment explanation
Indices: 79490862--79490937 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
79490852 ATGACGGGAG
**
79490862 ATATGAATGTGATTGGGCCTGATGGGTC
1 ATATGAATGTGATTGGGCCTGATGGACC
79490890 ATATGAATGTGATTGGGCCTGATGGACC
1 ATATGAATGTGATTGGGCCTGATGGACC
* * *
79490918 ATGTGAACGAGATTGGGCCT
1 ATATGAATGTGATTGGGCCT
79490938 ACATGGGCCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.24, C:0.13, G:0.34, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTGATGGACC
Found at i:79491284 original size:27 final size:27
Alignment explanation
Indices: 79491254--79492016 Score: 732
Period size: 27 Copynumber: 28.6 Consensus size: 27
79491244 TAATAAAGAG
*
79491254 AAATTACTGAAATACCCTCGATTTGCA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
79491281 AAATTACCAAAATACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79491308 AAATTACTGAAATACCTTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79491334 AAATTACTGAAATACACTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
79491361 AAATTACCAAAAAACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
79491387 AAATTACCAAAATACTCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
79491414 AAATTACCAAAATACGCCT-GATTTGTA
1 AAATTACTGAAATAC-CCTCGATTTGTA
* * *
79491441 AAATTA-TCAAAATATCCTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
*
79491467 AAATTACTGAAATACACTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
79491494 AAATTACCAAAATACCCTCG-TTTATG
1 AAATTACTGAAATACCCTCGATTTGTA
79491520 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79491547 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79491573 AAATTATTGAAATACCTTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* **
79491600 ACATTACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79491627 AAATTACCGAAATAACCTCGATTATG--
1 AAATTACTGAAATACCCTCGATT-TGTA
**
79491653 AAATTACTGAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79491680 AAATTA-TCGAAATACCTTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
79491706 AAGTTATTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
79491733 AAATTACCGAAATACCCTTGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79491759 AACTTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
79491786 AAATTACCAAAATACCC-CTAATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* * *
79491813 AAATTACCGAAATACCCTTGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
79491839 AAATTA-TTAAAGTACCCTCGATTTGTA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * * *
79491866 AAATTATTGACATACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79491893 AAATTACCGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79491920 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
79491947 AAATTA-TCGAAATACCATCTATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
79491974 AAATTACCGAAACACCCGCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79492001 AATTTA-TCGAAATACC
1 AAATTACT-GAAATACC
79492017 GTTGTAGTGT
Statistics
Matches: 601, Mismatches: 111, Indels: 48
0.79 0.15 0.06
Matches are distributed among these distances:
25 5 0.01
26 193 0.32
27 396 0.66
28 7 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:79491360 original size:53 final size:54
Alignment explanation
Indices: 79491254--79492016 Score: 748
Period size: 53 Copynumber: 14.3 Consensus size: 54
79491244 TAATAAAGAG
* * * *
79491254 AAATTACTGAAATACCCTCGATTTGCAAAATTACCAAAATACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * *
79491308 AAATTACTGAAATACCTTCGA-TTGTGAAATTACTGAAATACACTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
** * * * * *
79491361 AAATTACCAAAAAACCCTCGA-TTGTGAAATTACCAAAATACTCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
** * * * *
79491414 AAATTACCAAAATACGCCT-GATTTGTAAAATTATCAAAATATCCTCGA-TTGTG
1 AAATTACTGAAATAC-CCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * *
79491467 AAATTACTGAAATACACTCGATTTGTAAAATTACCAAAATACCCTCG-TTTATG
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* *
79491520 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * *
79491573 AAATTATTGAAATACCTTCGATTTGTAACATTACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * **
79491627 AAATTACCGAAATAACCTCGATTATG--AAATTACTGAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATT-TGTAAAATTACCGAAATACCCTCGATTTGTA
* * * ** *
79491680 AAATTA-TCGAAATACCTTCGA-TTGTGAAGTTATTGAAATACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * * *
79491733 AAATTACCGAAATACCCTTGA-TTGTGAACTTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
** * * *
79491786 AAATTACCAAAATACCC-CTAATTTGTAAAATTACCGAAATACCCTTGA-TTGTG
1 AAATTACTGAAATACCCTC-GATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* ** * * *
79491839 AAATTA-TTAAAGTACCCTCGATTTGTAAAATTATTGACATACCCCCAATTTGTA
1 AAATTACTGAAA-TACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* *
79491893 AAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * *
79491947 AAATTA-TCGAAATACCATCTATTTGTAAAATTACCGAAACACCCGCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
*
79492001 AATTTA-TCGAAATACC
1 AAATTACT-GAAATACC
79492017 GTTGTAGTGT
Statistics
Matches: 600, Mismatches: 91, Indels: 36
0.83 0.13 0.05
Matches are distributed among these distances:
51 2 0.00
52 6 0.01
53 388 0.65
54 199 0.33
55 5 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
Found at i:79491418 original size:80 final size:80
Alignment explanation
Indices: 79491254--79492016 Score: 749
Period size: 80 Copynumber: 9.5 Consensus size: 80
79491244 TAATAAAGAG
* * * *
79491254 AAATTACTGAAATACCCTCGATTTGCAAAATTACCAAAATACCCCCAATTTGTAAAATTACTGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAA
* *
79491319 ATACCTTCGA-TTGTG
66 ATACC-TCAATTTGTA
* * * * * **
79491334 AAATTACTGAAATACACTCAATTTGTAAAATTACCAAAAAACCCTCGA-TTGTGAAATTACCAAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAA
79491398 ATACTCTCAATTTGTA
66 ATAC-CTCAATTTGTA
* * * *
79491414 AAATTACCAAAATACGCCT-GATTTGTAAAATTATCAAAATATCCTCGA-TTGTGAAATTACTGA
1 AAATTACCGAAATAC-CCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGA
*
79491477 AATACACTCGATTTGTA
65 AATAC-CTCAATTTGTA
* * * **
79491494 AAATTACCAAAATACCCTCG-TTTATGAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAA
* *
79491558 ATACCCTCGA-TTGTG
66 ATA-CCTCAATTTGTA
** * * *
79491573 AAATTATTGAAATACCTTCGATTTGTAACATTACCAAAATACCCTCGATTTGTAAAATTACCGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAA
*
79491638 ATAACCTCGATTATG--
66 AT-ACCTCAATT-TGTA
* ** * * * * * *
79491653 AAATTACTGAAATACCCTTAATTTGTAAAATTATCGAAATACCTTCGA-TTGTGAAGTTATTGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAA
79491717 ATACCCTCAATTTGTA
66 ATA-CCTCAATTTGTA
* * * ** * **
79491733 AAATTACCGAAATACCCTTGA-TTGTGAACTTACTGAAATACCCTTGATTTGTAAAATTACCAAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAA
*
79491797 ATACCCCTAATTTGTA
66 ATACCTC-AATTTGTA
* * ** * * *
79491813 AAATTACCGAAATACCCTTGA-TTGTGAAATTATTAAAGTACCCTCGATTTGTAAAATTATTGAC
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAA
*
79491877 ATACCCCCAATTTGTA
66 ATA-CCTCAATTTGTA
* *
79491893 AAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-TCGA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACT-GA
*
79491957 AATACCATCTATTTGTA
65 AATACC-TCAATTTGTA
* * * * *
79491974 AAATTACCGAAACACCCGCGATTTGTAAATTTATCGAAATACC
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACC
79492017 GTTGTAGTGT
Statistics
Matches: 575, Mismatches: 89, Indels: 37
0.82 0.13 0.05
Matches are distributed among these distances:
78 3 0.01
79 108 0.19
80 369 0.64
81 93 0.16
82 2 0.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (80 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAA
ATACCTCAATTTGTA
Found at i:79491491 original size:133 final size:130
Alignment explanation
Indices: 79491253--79491979 Score: 717
Period size: 133 Copynumber: 5.5 Consensus size: 130
79491243 ATAATAAAGA
* * * * ** *
79491253 GAAATTACTGAAATACCCTCGATTTGCAAAATTACCAAAATACCCCCAATTTGTAAAATTACTGA
1 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATA-CCCTGA-TTGTAAAATTATTGA
* * *
79491318 AATACCTTCGATTGTGAAATTACTGAAATACACTCAATTTGTAAAATTACCAAAAAACCCTCGAT
64 AATACC-TCGATTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGAT
79491383 TGT
128 TGT
* * * **
79491386 GAAATTACCAAAATACTCTCAATTTGTAAAATTACCAAAATACGCCTGATTTGTAAAATTATCAA
1 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATAC-CCTGA-TTGTAAAATTATTGA
* *
79491451 AATATCCTCGATTGTGAAATTACTGAAATACACTCGATTTGTAAAATTACCAAAATACCCTCGTT
64 AATA-CCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGAT
*
79491516 TAT
128 TGT
* * * *
79491519 GAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTGTGAAATTATTGAA
1 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATACCCT-GATTGTAAAATTATTGAA
** * *
79491584 ATACCTTCGATT-TGTAACATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATAACCTCGA
65 ATACC-TCGATTGTG-AA-ATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGA
*
79491648 TTAT
127 TTGT
* * * * * *
79491652 GAAATTACTGAAATACCCTTAATTTGTAAAATTATCGAAATACCTTCGATTGTGAAGTTATTGAA
1 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATACCCT-GATTGTAAAATTATTGAA
* * * * * * ** *
79491717 ATACCCTCAATTTGTAAAATTACCGAAATACCCTTGA-TTGTGAACTTACTGAAATACCCTTGAT
65 ATA-CCTCGA-TTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGA-
79491781 TTGT
127 TTGT
* * *
79491785 AAAATTACCAAAATACCC-CTAATTTGTAAAATTACCGAAATACCCTTGATTGTGAAATTATT-A
1 GAAATTACCGAAATACCCTC-AATTTGTAAAATTACCGAAATACCC-TGATTGTAAAATTATTGA
* * * * * * *
79491848 AAGTACCCTCGATTTGTAAAATTATTGACATACCCCCAATTTGTAAAATTACCGAAATACCCTTG
64 AA-TA-CCTCGA-TTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCG
79491913 ATTTGT
126 A-TTGT
* * *
79491919 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCATCT-ATTTGTAAAATTA
1 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATACC--CTGA-TTGTAAAATTA
79491980 CCGAAACACC
Statistics
Matches: 510, Mismatches: 66, Indels: 34
0.84 0.11 0.06
Matches are distributed among these distances:
131 4 0.01
132 52 0.10
133 363 0.71
134 77 0.15
135 13 0.03
136 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (130 bp):
GAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATACCCTGATTGTAAAATTATTGAAA
TACCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTGT
Found at i:79493452 original size:81 final size:81
Alignment explanation
Indices: 79493317--79493467 Score: 239
Period size: 81 Copynumber: 1.9 Consensus size: 81
79493307 GTTTTCTACT
* *
79493317 CCCTTTCAATCTTGAATTTCTAGATCAAACTCTTGAAGTTGAAGTACCCATCGGATCAGTCTCGA
1 CCCTTTCAATCTTGAATTTCTAGATCAAACTCTTAAAGTAGAAGTACCCATCGGATCAGTCTCGA
79493382 CTTAGCATGTTTCTTA
66 CTTAGCATGTTTCTTA
* * * * *
79493398 CCCTTTCGATCTTGAATTTCTATATCGAACTCTTAAAGTAGAAGTACCCATCGGATCGGTCTCGG
1 CCCTTTCAATCTTGAATTTCTAGATCAAACTCTTAAAGTAGAAGTACCCATCGGATCAGTCTCGA
79493463 CTTAG
66 CTTAG
79493468 TTTCTTTCTT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (81 bp):
CCCTTTCAATCTTGAATTTCTAGATCAAACTCTTAAAGTAGAAGTACCCATCGGATCAGTCTCGA
CTTAGCATGTTTCTTA
Found at i:79502042 original size:18 final size:18
Alignment explanation
Indices: 79502019--79502085 Score: 98
Period size: 18 Copynumber: 3.7 Consensus size: 18
79502009 CAAGGTCACG
*
79502019 ATCAATAGCGTCACTATC
1 ATCAATAGCGTCACTAGC
79502037 ATCAATAGCGTCACTAGC
1 ATCAATAGCGTCACTAGC
* *
79502055 ATTAATATCGTCACTAGC
1 ATCAATAGCGTCACTAGC
*
79502073 ATCAATATCGTCA
1 ATCAATAGCGTCA
79502086 TTCATATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.28
Consensus pattern (18 bp):
ATCAATAGCGTCACTAGC
Found at i:79507029 original size:40 final size:40
Alignment explanation
Indices: 79506970--79507115 Score: 204
Period size: 40 Copynumber: 3.7 Consensus size: 40
79506960 CTAACGGGGT
* * * *
79506970 TAAGT-CCGAAGACAATTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
79507009 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
79507049 TAAGTCGCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
*
79507089 TAAGTCCAGAAGGCATTTGTGCGAGTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTG
79507116 GTTATATCCG
Statistics
Matches: 95, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 5 0.05
40 90 0.95
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
Found at i:79514941 original size:40 final size:40
Alignment explanation
Indices: 79514876--79515122 Score: 356
Period size: 40 Copynumber: 6.2 Consensus size: 40
79514866 TCTTCGGAAT
* ** *
79514876 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
79514915 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
79514955 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
79514995 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
79515035 TTAGCCCGGATATAACAACTCGCACAAATGCCTTC-GGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *
79515074 TTAGCCCGGACATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
79515114 TTAGCCCGG
1 TTAGCCCGG
79515123 GTATCATTCA
Statistics
Matches: 189, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 37 0.20
40 152 0.80
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:79523124 original size:40 final size:40
Alignment explanation
Indices: 79523059--79523304 Score: 356
Period size: 40 Copynumber: 6.2 Consensus size: 40
79523049 TCTTCGGAAT
* ** *
79523059 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
79523098 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
79523138 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
79523178 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
79523218 TTAGCCCGGATATAACAACTCGCACAAATGCCTTC--GTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
79523256 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
79523296 TTAGCCCGG
1 TTAGCCCGG
79523305 GTATCATTCA
Statistics
Matches: 188, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 34 0.18
39 4 0.02
40 150 0.80
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:79533928 original size:2 final size:2
Alignment explanation
Indices: 79533921--79533948 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
79533911 ATGCTTTATG
79533921 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79533949 CTTATTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79535292 original size:47 final size:46
Alignment explanation
Indices: 79535070--79535332 Score: 207
Period size: 46 Copynumber: 5.7 Consensus size: 46
79535060 AGGGTATAAT
* *
79535070 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCACATTAA
1 GCCGATGCCATGTCCCAGACATG-TCTTACACTGGCTCTCTCATCAA
** * * **
79535117 GTAGATGCCATGTCCCAGACATGGTCTTACACTGACAC-CTCATGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCTCATCAA
* * *
79535163 GCCGATG-CATGTCCGAGACATGTCTTACACTAGCT-TACATC-TCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCT-C-TCATC-AA
* * *
79535209 GCCGATG-CATATCCCGGACATGTCTTACACTAGCTCTCGTC-TCAA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTC-TCATCAA
* * * ***
79535254 TGCCGATGCCATGTTCCAGACATGTCTTACATTGGCTCTCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTC-TCATCAA
* *
79535302 GCCAATG-CATGTCCTAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGTCTTACACT
79535333 AGCACACAAA
Statistics
Matches: 172, Mismatches: 35, Indels: 19
0.76 0.15 0.08
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 77 0.45
47 66 0.38
48 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCTCATCAA
Found at i:79540388 original size:27 final size:27
Alignment explanation
Indices: 79540352--79540635 Score: 381
Period size: 27 Copynumber: 10.6 Consensus size: 27
79540342 TACTAAAATG
* * *
79540352 CCCTCAATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
79540379 CCATGGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
79540406 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
79540433 CTCTCGATTTATAGAATTACCTTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
79540460 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
79540487 CCCTCGATTTATAGAA-TACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
79540513 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
79540540 TCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
79540567 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
79540594 TCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
79540621 CCCTCGATTTATAGA
1 CCCTCGATTTATAGA
79540636 TAAAACTACT
Statistics
Matches: 224, Mismatches: 32, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.10
27 201 0.90
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:79540620 original size:134 final size:134
Alignment explanation
Indices: 79540373--79540635 Score: 400
Period size: 134 Copynumber: 2.0 Consensus size: 134
79540363 TAAAATTACC
* * * *
79540373 GTTTTACCATGGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACTCTC
1 GTTTTACCATCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTC
* *
79540438 GATTTATAGAATTACCTTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAA
66 GATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAA
79540503 TACT
131 TACT
* * * * *
79540507 GTTTTACCCTCGATTTACAGAATTACCATTTTATCCTCGATTTATAGAATTATCGTTTCACCCTC
1 GTTTTACCATCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTC
* * *
79540572 GATTTACAGAATTACCGTTTTATCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGA
66 GATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGA
79540636 TAAAACTACT
Statistics
Matches: 115, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
134 115 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.42
Consensus pattern (134 bp):
GTTTTACCATCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTC
GATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAA
TACT
Found at i:79540722 original size:54 final size:53
Alignment explanation
Indices: 79540636--79540819 Score: 192
Period size: 54 Copynumber: 3.4 Consensus size: 53
79540626 GATTTATAGA
* * * ** *
79540636 TAAAACTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAG
1 TAAAATTACCAAAATACCCCT-GTTTTTAAAATTACCAAAATACCCTCGATCTG
* *
79540690 TAAAATTACCAAAATACCCCTAGTTTTTAAAATTACCAAAATACCC-CTAGCTTG
1 TAAAATTACCAAAATACCCCT-GTTTTTAAAATTACCAAAATACCCTCGATC-TG
* * * * *
79540744 TAAAATTACCAAAATACCCCTGATTTTTGAAATTATCGAAATACTCTCGATTTG
1 TAAAATTACCAAAATACCCCTG-TTTTTAAAATTACCAAAATACCCTCGATCTG
*
79540798 TAAAA-TATCAAAATACCCCTGT
1 TAAAATTACCAAAATACCCCTGT
79540820 AAGGTAGAAT
Statistics
Matches: 110, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
53 19 0.17
54 88 0.80
55 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (53 bp):
TAAAATTACCAAAATACCCCTGTTTTTAAAATTACCAAAATACCCTCGATCTG
Found at i:79540776 original size:27 final size:27
Alignment explanation
Indices: 79540636--79540845 Score: 153
Period size: 27 Copynumber: 7.8 Consensus size: 27
79540626 GATTTATAGA
* * * * *
79540636 TAAAACTACTAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCCTGATTTG
* **
79540663 CAAAATTACCAAAATA-CCCTCGATCAG
1 TAAAATTACCAAAATACCCCT-GATTTG
*
79540690 TAAAATTACCAAAATACCCCT-AGTTTT
1 TAAAATTACCAAAATACCCCTGA-TTTG
*
79540717 TAAAATTACCAAAATACCCCT-AGCTTG
1 TAAAATTACCAAAATACCCCTGA-TTTG
*
79540744 TAAAATTACCAAAATACCCCTGATTTT
1 TAAAATTACCAAAATACCCCTGATTTG
* * * *
79540771 TGAAATTATCGAAATA-CTCTCGATTTG
1 TAAAATTACCAAAATACCCCT-GATTTG
* **
79540798 TAAAA-TATCAAAATACCCCTG-TAAGG
1 TAAAATTACCAAAATACCCCTGAT-TTG
* *
79540824 TAGAATTACCGAAATACCCCTG
1 TAAAATTACCAAAATACCCCTG
79540846 TAGGATAGAA
Statistics
Matches: 146, Mismatches: 29, Indels: 16
0.76 0.15 0.08
Matches are distributed among these distances:
25 1 0.01
26 22 0.15
27 118 0.81
28 5 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGATTTG
Found at i:79540777 original size:81 final size:80
Alignment explanation
Indices: 79540664--79540817 Score: 177
Period size: 81 Copynumber: 1.9 Consensus size: 80
79540654 CTTGGTTTAC
*
79540664 AAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATACCCCTAG-TTTTTAAAATTACCA
1 AAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATA-CCCTAGATTTGTAAAA-TACCA
79540728 AAATACCCCTAGCTTGT
64 AAATACCCCTAGCTTGT
*** * * * * * *
79540745 AAAATTACCAAAATACCC-CTGATTTTTGAAATTATCGAAATACTCTCGATTTGTAAAATATCAA
1 AAAATTACCAAAATACCCTC-GATCAGTAAAATTACCAAAATACCCTAGATTTGTAAAATACCAA
79540809 AATACCCCT
65 AATACCCCT
79540818 GTAAGGTAGA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
80 19 0.31
81 42 0.69
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATACCCTAGATTTGTAAAATACCAAA
ATACCCCTAGCTTGT
Found at i:79540846 original size:27 final size:27
Alignment explanation
Indices: 79540808--79541049 Score: 304
Period size: 27 Copynumber: 9.0 Consensus size: 27
79540798 TAAAATATCA
*
79540808 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
79540835 AAATACCCCTGTAGGATAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
79540862 AAATAACCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
79540889 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
79540916 AAATACCTCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
79540943 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
79540970 AAATACCCTTATAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* ** *
79540997 AAAGACTACTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
79541024 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
79541050 ATTTTGCCCC
Statistics
Matches: 184, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 184 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:79541300 original size:24 final size:25
Alignment explanation
Indices: 79541255--79541325 Score: 126
Period size: 24 Copynumber: 2.9 Consensus size: 25
79541245 AGGAAGTGCT
*
79541255 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACCG
79541280 AAAAGGGCTTTG-CCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
79541304 AAAAGGGCTTTGCCCCAGTTTA
1 AAAAGGGCTTTGCCCCAGTTTA
79541326 TCAAAAAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
24 23 0.52
25 21 0.48
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:79545676 original size:47 final size:48
Alignment explanation
Indices: 79545605--79545729 Score: 157
Period size: 48 Copynumber: 2.6 Consensus size: 48
79545595 TATAATGTCG
* *
79545605 ATGCCATGTCCCAGACATGATCTTACACTAGTTCTCACGT-TAAGT-CA
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-ACTCACGTATAAGTCCA
* ** *
79545652 ATGCCATGTCCTAGACATGGTCTTACACT-GACTCACGTATCCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGACTCACGTATAAGT-CCA
79545700 ATGCCATGTCCCAGACATGGTCTTACACTA
1 ATGCCATGTCCCAGACATGGTCTTACACTA
79545730 ACACCTCATG
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
45 7 0.10
46 4 0.06
47 27 0.40
48 29 0.43
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGACTCACGTATAAGTCCA
Found at i:79545812 original size:47 final size:47
Alignment explanation
Indices: 79545598--79545867 Score: 182
Period size: 47 Copynumber: 5.8 Consensus size: 47
79545588 CATAGGGTAT
* * * *
79545598 AATGTCGATGCCATGTCCCAGACATGATCTTACACTAGTTCTCA-CGTT
1 AATGCCGATGCCATGTCCTAGACATG-TCTTACACTAGCTCTCATC-TA
* * * * * *
79545646 AA-GTCAATGCCATGTCCTAGACATGGTCTTACACT-GACTCACGTATC
1 AATGCCGATGCCATGTCCTAGACAT-GTCTTACACTAG-CTCTCATCTA
** * * * *
79545693 CGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAACACCTCATGT-
1 AATGCCGATGCCATGTCCTAGACAT-GTCTTACACTAGC-TCTCATCTA
* * *
79545741 -A-GCTGATG-TATGTCCTAGAAATGTCTTACACTAGCTCTCATCTA
1 AATGCCGATGCCATGTCCTAGACATGTCTTACACTAGCTCTCATCTA
* *
79545785 AATGCCGATGCCATGTCCTAAACATGTCTTACACTGGCTCTCA--TA
1 AATGCCGATGCCATGTCCTAGACATGTCTTACACTAGCTCTCATCTA
* * *
79545830 ATTTGGTCGATG-CATGTCCTAGACATGTCGTACACTAG
1 A-AT-GCCGATGCCATGTCCTAGACATGTCTTACACTAG
79545868 GACACAGATA
Statistics
Matches: 175, Mismatches: 35, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
43 6 0.03
44 12 0.07
45 15 0.09
46 37 0.21
47 67 0.38
48 34 0.19
49 4 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (47 bp):
AATGCCGATGCCATGTCCTAGACATGTCTTACACTAGCTCTCATCTA
Found at i:79554901 original size:45 final size:44
Alignment explanation
Indices: 79554812--79554901 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 44
79554802 GAATTATGTA
* * *
79554812 ATCTGAACTCATTGAGTTATGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTAAATTATGTCTGAGTTCATGATATATATGAC
* * *
79554856 ATCTGAACTCATTAAATTGTGGTCTGAGTTCGTGATATGTATGAC
1 ATCTGAACTCATTAAATTAT-GTCTGAGTTCATGATATATATGAC
79554901 A
1 A
79554902 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 17 0.44
45 22 0.56
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (44 bp):
ATCTGAACTCATTAAATTATGTCTGAGTTCATGATATATATGAC
Found at i:79555840 original size:30 final size:30
Alignment explanation
Indices: 79555804--79555863 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
79555794 TTGAAGGTAG
79555804 GTTAGTAAACATGATAAATAAATATGAAAT
1 GTTAGTAAACATGATAAATAAATATGAAAT
79555834 GTTAGTAAACATGATAAATAAATATGAAAT
1 GTTAGTAAACATGATAAATAAATATGAAAT
79555864 TGGTGTGGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.53, C:0.03, G:0.13, T:0.30
Consensus pattern (30 bp):
GTTAGTAAACATGATAAATAAATATGAAAT
Found at i:79577640 original size:46 final size:46
Alignment explanation
Indices: 79577590--79577765 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
79577580 TGGTTGAGCA
79577590 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79577636 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
79577681 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79577729 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79577766 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79577746 original size:93 final size:93
Alignment explanation
Indices: 79577587--79577758 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
79577577 GGATGGTTGA
* *
79577587 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79577652 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
79577680 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79577745 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
79577759 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79585214 original size:46 final size:46
Alignment explanation
Indices: 79585164--79585339 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
79585154 TGGTTGAGCA
79585164 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79585210 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
79585255 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79585303 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79585340 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79585320 original size:93 final size:93
Alignment explanation
Indices: 79585161--79585332 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
79585151 GGATGGTTGA
* *
79585161 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79585226 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
79585254 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79585319 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
79585333 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79593513 original size:32 final size:32
Alignment explanation
Indices: 79593465--79593569 Score: 174
Period size: 32 Copynumber: 3.3 Consensus size: 32
79593455 CTATATATGT
*
79593465 TAGTGAATGGTGATGACATCTCCCATTAATTA
1 TAGTGAATGGTGATGACATCTCCCATTAAGTA
* *
79593497 TTGTGAATGGTTATGACATCTCCCATTAAGTA
1 TAGTGAATGGTGATGACATCTCCCATTAAGTA
79593529 TAGTGAATGGTGATGACATCTCCCATTAAGTA
1 TAGTGAATGGTGATGACATCTCCCATTAAGTA
*
79593561 TGGTGAATG
1 TAGTGAATG
79593570 ATTTAATTAG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 67 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (32 bp):
TAGTGAATGGTGATGACATCTCCCATTAAGTA
Done.