Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 255 of 433
Found at i:79594639 original size:30 final size:30
Alignment explanation
Indices: 79594605--79594664 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
79594595 AGATGAGTAA
*
79594605 CTTGATGTAATTTCAACTTGTGTGAGCAAC
1 CTTGATGTAACTTCAACTTGTGTGAGCAAC
* *
79594635 CTTGATGTAACTTCAGCTTTTGTGAGCAAC
1 CTTGATGTAACTTCAACTTGTGTGAGCAAC
79594665 ATAGTTCACC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (30 bp):
CTTGATGTAACTTCAACTTGTGTGAGCAAC
Found at i:79596514 original size:48 final size:48
Alignment explanation
Indices: 79596366--79596485 Score: 213
Period size: 48 Copynumber: 2.5 Consensus size: 48
79596356 CATTAGGGTT
79596366 ATATGAGATCCCATGTAAGACCATGTATGGGACATGGAATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTATGGGACATGGAATTGGCATCG
* *
79596414 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTATGGGACATGGAATTGGCATCG
*
79596462 ATATGAGATCCCATATAAGACCAT
1 ATATGAGATCCCATGTAAGACCAT
79596486 ATTTGGGATA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (48 bp):
ATATGAGATCCCATGTAAGACCATGTATGGGACATGGAATTGGCATCG
Found at i:79596541 original size:96 final size:96
Alignment explanation
Indices: 79596366--79596549 Score: 235
Period size: 96 Copynumber: 1.9 Consensus size: 96
79596356 CATTAGGGTT
* * * *
79596366 ATATGAGATCCCATGTAAGACCATGTATGGGACATGGAATTGGCATCGATATGAGATCCCATGTA
1 ATATGAGATCCCATATAAGACCATATATGGGACATGGAACTAGCATCGATATGAGATCCCATGTA
79596431 AGACCATGTCTGGGACATGGCATTGGCATCG
66 AGACCATGTCTGGGACATGGCATTGGCATCG
* * * * * ** *
79596462 ATATGAGATCCCATATAAGACCATATTTGGGATATGGTACTAGTATCGATATGTGATTTCGTGTA
1 ATATGAGATCCCATATAAGACCATATATGGGACATGGAACTAGCATCGATATGAGATCCCATGTA
*
79596527 AGATCATG-CTTGGGACATGGCAT
66 AGACCATGTC-TGGGACATGGCAT
79596550 CGATATGAGA
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
95 1 0.01
96 73 0.99
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (96 bp):
ATATGAGATCCCATATAAGACCATATATGGGACATGGAACTAGCATCGATATGAGATCCCATGTA
AGACCATGTCTGGGACATGGCATTGGCATCG
Found at i:79598660 original size:19 final size:21
Alignment explanation
Indices: 79598636--79598675 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
79598626 AAGGGAGAAT
79598636 AAAG-AAATG-GAAAAAAAAA
1 AAAGAAAATGAGAAAAAAAAA
79598655 AAAGAAAATGATGAAAAAAAA
1 AAAGAAAATGA-GAAAAAAAA
79598676 TGTGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 5 0.28
22 9 0.50
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (21 bp):
AAAGAAAATGAGAAAAAAAAA
Found at i:79600015 original size:29 final size:29
Alignment explanation
Indices: 79599983--79600085 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
79599973 GTGACGAGAT
* *
79599983 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
79600012 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
79600041 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
79600070 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79600086 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:79606395 original size:16 final size:18
Alignment explanation
Indices: 79606374--79606410 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
79606364 AAGGGAGAAT
79606374 AAAG-AAATG-GAAAAAA
1 AAAGAAAATGAGAAAAAA
79606390 AAAGAAAATGATGAAAAAA
1 AAAGAAAATGA-GAAAAAA
79606409 AA
1 AA
79606411 TGTGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.22
17 5 0.28
19 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (18 bp):
AAAGAAAATGAGAAAAAA
Found at i:79611452 original size:40 final size:40
Alignment explanation
Indices: 79611408--79611677 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
79611398 CCAGCATGAT
* * * *
79611408 TGCTCTTCGGGACCTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
79611448 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
79611488 TGCTCTTC-GAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
79611527 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
79611567 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
79611607 TGCTCTTCGGAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
79611647 TGCTCTTCGG-ACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
79611678 CTCAATTCTC
Statistics
Matches: 216, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 55 0.25
40 161 0.75
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:79611563 original size:119 final size:119
Alignment explanation
Indices: 79611393--79611677 Score: 473
Period size: 119 Copynumber: 2.4 Consensus size: 119
79611383 CCCGAATACA
* * * * * *
79611393 CGTCACCAGCATGATTGCTCTTCGGGACCTAGCCCAGATACATCACTAGCACGAATGCTCTTCGG
1 CGTCACTAGCACGAATGCTCTTC-GGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
79611458 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTC-GAACTTAGTCCGGATG
65 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATG
*
79611512 CGTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAATGCTCTTCGG
1 CGTCACTAGCACGAATGCTCTTCGG-ACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
79611577 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATG
65 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATG
*
79611632 CGTCACTAGCACGAATGCTCTTCGGACTTAGTCCGGATATATCACT
1 CGTCACTAGCACGAATGCTCTTCGGACTTAGTCCGGATACATCACT
79611678 CTCAATTCTC
Statistics
Matches: 155, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
118 2 0.01
119 112 0.72
120 41 0.26
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
CGTCACTAGCACGAATGCTCTTCGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGA
ACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATG
Found at i:79613541 original size:37 final size:36
Alignment explanation
Indices: 79613491--79613577 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
79613481 TACGAAGTCT
79613491 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79613527 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79613564 TCACCCGGAACATA
1 T-ACCCGG-ACATA
79613578 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:79613713 original size:49 final size:49
Alignment explanation
Indices: 79613646--79613847 Score: 341
Period size: 49 Copynumber: 4.1 Consensus size: 49
79613636 TTTACCACAT
* * *
79613646 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
* *
79613695 ATATGTATACATTTTCACATTCATCACATCCGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
79613744 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
* *
79613793 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
79613842 ATATAT
1 ATATAT
79613848 TATTATGTAC
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 143 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:79616539 original size:43 final size:43
Alignment explanation
Indices: 79616478--79616561 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
79616468 TTGTGGTCCC
* * *
79616478 GAAACCACTTTCCGACTAGGGTCACATTAGGGGTGTCACAACT
1 GAAACCACTTTCCGACTAGGGCCAAATTAGGGCTGTCACAACT
*
79616521 GAAACCACTTTCTGACTAGGGCCAAATTAGGGCTGTCACAA
1 GAAACCACTTTCCGACTAGGGCCAAATTAGGGCTGTCACAA
79616562 AAAGTGGTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (43 bp):
GAAACCACTTTCCGACTAGGGCCAAATTAGGGCTGTCACAACT
Found at i:79621391 original size:46 final size:46
Alignment explanation
Indices: 79621341--79621516 Score: 202
Period size: 46 Copynumber: 3.8 Consensus size: 46
79621331 TGTTTGGCCA
79621341 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACA-G
* *
79621387 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAC-A-G
* *
79621432 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACAG
*
79621481 T-CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79621517 GCGGGCTACA
Statistics
Matches: 113, Mismatches: 7, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
44 1 0.01
45 2 0.02
46 63 0.56
47 28 0.25
49 1 0.01
50 6 0.05
51 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAG
Found at i:79621498 original size:93 final size:93
Alignment explanation
Indices: 79621339--79621508 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
79621329 GATGTTTGGC
*
79621339 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATCTCCGAACTCGTTGAGTT
79621404 GAGTCCGAGTTCGAGAGATGTAACTAGG
66 GAGTCCGAGTTCGAGAGATGTAACTAGG
* *
79621432 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA-CT-CGAGCTCGTTGAG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AA-ATCTCCGAACTCGTTGAG
79621495 TTGAGTCCGAGTTC
64 TTGAGTCCGAGTTC
79621509 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
93 68 0.94
94 3 0.04
95 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATCTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGAGAGATGTAACTAGG
Found at i:79624813 original size:37 final size:37
Alignment explanation
Indices: 79624772--79624847 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
79624762 GTATGTGTAT
*
79624772 TGAACTCATGTGAATGACATGAAATACGATGAGCTCA
1 TGAACTCATGTGAATGACATGAAATACAATGAGCTCA
79624809 TGAACTCATGTGAATGACATGAAATACAATGAGCTCA
1 TGAACTCATGTGAATGACATGAAATACAATGAGCTCA
79624846 TG
1 TG
79624848 TTAAGAACAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
TGAACTCATGTGAATGACATGAAATACAATGAGCTCA
Found at i:79624831 original size:19 final size:19
Alignment explanation
Indices: 79624772--79624831 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
79624762 GTATGTGTAT
79624772 TGAACTCATGTGAATGACA
1 TGAACTCATGTGAATGACA
* * *
79624791 TGAAAT-ACGATG-A-GCTCA
1 TGAACTCATG-TGAATG-ACA
79624809 TGAACTCATGTGAATGACA
1 TGAACTCATGTGAATGACA
79624828 TGAA
1 TGAA
79624832 ATACAATGAG
Statistics
Matches: 30, Mismatches: 6, Indels: 10
0.65 0.13 0.22
Matches are distributed among these distances:
17 1 0.03
18 12 0.40
19 16 0.53
20 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (19 bp):
TGAACTCATGTGAATGACA
Found at i:79633857 original size:30 final size:30
Alignment explanation
Indices: 79633821--79633921 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
79633811 GACAAGATTG
* * *
79633821 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
79633851 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
79633879 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
79633908 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79633922 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:79633933 original size:29 final size:28
Alignment explanation
Indices: 79633850--79633925 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
79633840 AAAATTGTAC
* *
79633850 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
79633878 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
79633907 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
79633926 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:79641748 original size:30 final size:30
Alignment explanation
Indices: 79641712--79641812 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
79641702 GACAAGATTG
* * *
79641712 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
79641742 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
79641770 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
79641799 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79641813 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:79641824 original size:29 final size:28
Alignment explanation
Indices: 79641741--79641816 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
79641731 AAAATTGTAC
* *
79641741 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
79641769 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
79641798 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
79641817 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:79649208 original size:29 final size:29
Alignment explanation
Indices: 79649175--79649248 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
79649165 GTGACGAGAT
79649175 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
79649204 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
79649233 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79649249 AGCTCGAGGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:79657099 original size:29 final size:29
Alignment explanation
Indices: 79657067--79657142 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
79657057 CTGGAAATAT
* *
79657067 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
79657096 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
79657125 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
79657143 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:79658937 original size:46 final size:46
Alignment explanation
Indices: 79658870--79659044 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
79658860 TGTAACCCGC
*
79658870 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* * *
79658916 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGTTGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCATTCGCAT
* *** * *
79658962 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
79659009 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
79659045 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.65
47 34 0.32
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:79659004 original size:93 final size:93
Alignment explanation
Indices: 79658878--79659049 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
79658868 GCCCATAAGT
* *
79658878 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79658943 CGAGCTCGGTTGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
79658971 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79659036 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
79659050 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:79659064 original size:46 final size:44
Alignment explanation
Indices: 79658875--79659064 Score: 113
Period size: 46 Copynumber: 4.1 Consensus size: 44
79658865 CCCGCCCATA
* * * *
79658875 AGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCAAATCC-T
* * *
79658920 AAGTGAACTCGGACTCAACTCAACGAGCTCGGTTGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
79658970 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
79659013 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
79659060 AGTGA
1 AGTGA
79659065 CATGTCACTT
Statistics
Matches: 113, Mismatches: 14, Indels: 34
0.70 0.09 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 6 0.05
45 2 0.02
46 61 0.54
47 28 0.25
48 4 0.04
49 2 0.02
50 4 0.04
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:79661473 original size:30 final size:30
Alignment explanation
Indices: 79661438--79661516 Score: 81
Period size: 30 Copynumber: 2.6 Consensus size: 30
79661428 AAGAAAATCA
*
79661438 AATAAAGAAATCCAAGATAGAGA-AACCTAG
1 AATAAAGAAATCCAAGATAAAGAGAACC-AG
* *
79661468 AATAAAGAGATCC-AGAATAAAGAGATCCAG
1 AATAAAGAAATCCAAG-ATAAAGAGAACCAG
* *
79661498 GATAAAGAAACCCAAGATA
1 AATAAAGAAATCCAAGATA
79661517 CGATATTATG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
29 2 0.05
30 33 0.82
31 5 0.12
ACGTcount: A:0.56, C:0.14, G:0.18, T:0.13
Consensus pattern (30 bp):
AATAAAGAAATCCAAGATAAAGAGAACCAG
Found at i:79661486 original size:15 final size:15
Alignment explanation
Indices: 79661466--79661505 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
79661456 AGAGAAACCT
79661466 AGAATAAAGAGATCC
1 AGAATAAAGAGATCC
79661481 AGAATAAAGAGATCC
1 AGAATAAAGAGATCC
*
79661496 AGGATAAAGA
1 AGAATAAAGA
79661506 AACCCAAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.55, C:0.10, G:0.23, T:0.12
Consensus pattern (15 bp):
AGAATAAAGAGATCC
Found at i:79661516 original size:15 final size:15
Alignment explanation
Indices: 79661439--79661516 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
79661429 AGAAAATCAA
79661439 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
79661454 ATAGAGAAA-CCTAG
1 ATAAAGAAATCCAAG
*
79661468 AATAAAGAGATCC-AG
1 -ATAAAGAAATCCAAG
* *
79661483 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
79661499 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
79661514 ATA
1 ATA
79661517 CGATATTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.55, C:0.14, G:0.18, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:79664466 original size:46 final size:45
Alignment explanation
Indices: 79664294--79664463 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
79664284 TGTAACCCGC
* * *
79664294 CCATAAGTGAGCTCGGACTCAACTCAATGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCA-GCATTCGCAT
*
79664340 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGCATTCGC-A--T
* *** *
79664386 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAG-CATTCGCAT
*
79664433 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
79664464 TTCGGATGCC
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 60 0.59
47 32 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGCATTCGCAT
Found at i:79664472 original size:93 final size:93
Alignment explanation
Indices: 79664305--79664473 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
79664295 CATAAGTGAG
* * * *
79664305 CTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
1 CTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAACGA
79664370 GCTCAGATGCCTAGTTACATCTCTCGAA
66 GCTCAGATGCCTAGTTACATCTCTCGAA
*
79664398 CTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAACGA
1 CTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAACGA
* *
79664463 GTTCGGATGCC
66 GCTCAGATGCC
79664474 CAAATATCCT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
CTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAACGA
GCTCAGATGCCTAGTTACATCTCTCGAA
Found at i:79666075 original size:27 final size:27
Alignment explanation
Indices: 79666045--79666188 Score: 157
Period size: 27 Copynumber: 5.3 Consensus size: 27
79666035 TACTGAAATG
79666045 CCCTCGATTTTTAAAATTACCGTTTTA
1 CCCTCGATTTTTAAAATTACCGTTTTA
** * *
79666072 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTTTAAAATTACCGTTTTA
* *
79666099 CCCTC-A-GTTTACAGAATTATCGTTTTA
1 CCCTCGATTTTTA-A-AATTACCGTTTTA
** *
79666126 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTTTAAAATTACCGTTTTA
*
79666153 CCCTCGGTTTTTAAAATTACCGTTTTA
1 CCCTCGATTTTTAAAATTACCGTTTTA
*
79666180 CCCTTGATT
1 CCCTCGATT
79666189 GTGAAATTAC
Statistics
Matches: 92, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
25 2 0.02
26 1 0.01
27 86 0.93
28 1 0.01
29 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.10, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTTTAAAATTACCGTTTTA
Found at i:79666117 original size:54 final size:54
Alignment explanation
Indices: 79666057--79666188 Score: 201
Period size: 54 Copynumber: 2.4 Consensus size: 54
79666047 CTCGATTTTT
79666057 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTAC
1 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTAC
* * * * **
79666111 AGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGGTTTTT
1 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTAC
*
79666165 AAAATTACCGTTTTACCCTTGATT
1 AAAATTACCGTTTTACCCTCGATT
79666189 GTGAAATTAC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (54 bp):
AAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTAC
Found at i:79666223 original size:27 final size:27
Alignment explanation
Indices: 79666193--79666468 Score: 275
Period size: 27 Copynumber: 10.2 Consensus size: 27
79666183 TTGATTGTGA
79666193 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
79666220 AATT-TTCAAAATACCACTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * **
79666247 AATTACTGAAATACCCTTATAGCATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
79666274 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
79666301 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
79666328 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
79666355 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
79666382 AATTATTAAAATACCCTTGCAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
79666409 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
79666436 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
79666463 AATTAC
1 AATTAC
79666469 CATTTTGCCC
Statistics
Matches: 202, Mismatches: 45, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
26 1 0.00
27 200 0.99
28 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:79666294 original size:81 final size:80
Alignment explanation
Indices: 79666201--79666466 Score: 340
Period size: 81 Copynumber: 3.3 Consensus size: 80
79666191 GAAATTACTG
79666201 AAATACCCCTGTAGGGTAGAATTTTCAAAATACCACTATAGGGTAGAATTACTGAAATACCCTTA
1 AAATACCCCTGTAGGGTAGAATTTTCAAAATACC-CTATAGGGTAGAATTACTGAAATACCCTTA
*
79666266 TAGCATAGAATTACCA
65 TAGGATAGAATTACCA
*
79666282 AAATACCCCTGTAGGGTAGAA-TTTCTGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTT
1 AAATACCCCTGTAGGGTAGAATTTTC-AAAATA-CCCTATAGGGTAGAATTACTGAAATACCCTT
79666346 ATAGGATAGAATTACCA
64 ATAGGATAGAATTACCA
* * * *
79666363 AAATACCCCTGTAGGGTAGAATTATT-AAAATACCCT-TGCAGGATAGAAATACCGAAATACCCC
1 AAATACCCCTGTAGGGTAGAATT-TTCAAAATACCCTAT--AGGGTAGAATTACTGAAATACCCT
* * *
79666426 TGTAGGGTAGAATTACCG
63 TATAGGATAGAATTACCA
* * * *
79666444 AGATACCCTTGTGGGGTAAAATT
1 AAATACCCCTGTAGGGTAGAATT
79666467 ACCATTTTGC
Statistics
Matches: 165, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
79 1 0.01
80 8 0.05
81 151 0.92
82 3 0.02
83 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (80 bp):
AAATACCCCTGTAGGGTAGAATTTTCAAAATACCCTATAGGGTAGAATTACTGAAATACCCTTAT
AGGATAGAATTACCA
Found at i:79666706 original size:27 final size:26
Alignment explanation
Indices: 79666668--79666750 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
79666658 CGGAGGAAGC
*
79666668 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
79666695 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
79666721 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
79666748 GTT
1 GTT
79666751 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:79666869 original size:22 final size:22
Alignment explanation
Indices: 79666837--79666895 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
79666827 CCCGATATTA
*
79666837 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
79666859 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
79666881 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
79666896 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:79667082 original size:27 final size:27
Alignment explanation
Indices: 79667060--79667126 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
79667050 TAGGTGGGTT
*
79667060 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
79667087 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
79667114 TGTCACGATATCT
1 TGCCACAATATCT
79667127 ATTCTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:79667306 original size:6 final size:6
Alignment explanation
Indices: 79667297--79667510 Score: 203
Period size: 6 Copynumber: 35.3 Consensus size: 6
79667287 ATTACTAATA
*
79667297 CTGATT CTGATT CTGATT CTG-TT ACTGATT CTGATT CTGATT CTG-TCAC
1 CTGATT CTGATT CTGATT CTGATT -CTGATT CTGATT CTGATT CTGAT--T
* * *
79667346 CTAATT CTAATT CTGATT CTGATT CTG-TT ACTAATAT -TGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT -CTGAT-T CTGATT CTGATT
* *
79667394 CTGATT CTG-TT ACTGATT CTGATT CTGATT CTG-TCAC CTAATT CTGATT
1 CTGATT CTGATT -CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT
*
79667443 CTGATT CTGATT CTG-TT ACTAATAT -TGATT CTGATT CTGATT CTG-TT
1 CTGATT CTGATT CTGATT -CTGAT-T CTGATT CTGATT CTGATT CTGATT
79667490 ACTGATT CTGATT CTGATT CT
1 -CTGATT CTGATT CTGATT CT
79667511 TAATTTGGTT
Statistics
Matches: 176, Mismatches: 12, Indels: 40
0.77 0.05 0.18
Matches are distributed among these distances:
5 14 0.08
6 146 0.83
7 12 0.07
8 4 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:79667401 original size:85 final size:85
Alignment explanation
Indices: 79667280--79667510 Score: 435
Period size: 85 Copynumber: 2.7 Consensus size: 85
79667270 CACCTAATTT
* *
79667280 TGATTCTATTACTAATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCTGTCA
1 TGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCTGTCA
79667345 CCTAATTCTAATTCTGATTC
66 CCTAATTCTAATTCTGATTC
79667365 TGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCTGTCA
1 TGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCTGTCA
*
79667430 CCTAATTCTGATTCTGATTC
66 CCTAATTCTAATTCTGATTC
79667450 TGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCT
1 TGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCT
79667511 TAATTTGGTT
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 143 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.48
Consensus pattern (85 bp):
TGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCTGTCA
CCTAATTCTAATTCTGATTC
Found at i:79669526 original size:27 final size:26
Alignment explanation
Indices: 79669496--79669649 Score: 141
Period size: 27 Copynumber: 5.7 Consensus size: 26
79669486 TACTAAAATG
**
79669496 CCCTCGATTTTGAAAATTATTGTTTTA
1 CCCTCGATTTT-AAAATTACCGTTTTA
* *
79669523 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTT-TAAAATTACCGTTTTA
* *
79669550 CCCTC-AGTTTACAGAATTATCGTTTTA
1 CCCTCGATTTTA-A-AATTACCGTTTTA
*
79669577 CCCTTGA-TTTACAGAATTACCGTTTTA
1 CCCTCGATTTTA-A-AATTACCGTTTTA
79669604 CCCTCGATTTTTAAAATTACCGTTTTA
1 CCCTCGA-TTTTAAAATTACCGTTTTA
* * *
79669631 CCCTTGATTGTGAAATTAC
1 CCCTCGATTTTAAAATTAC
79669650 TAAAATACCC
Statistics
Matches: 107, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
25 2 0.02
26 13 0.12
27 85 0.79
28 3 0.03
29 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (26 bp):
CCCTCGATTTTAAAATTACCGTTTTA
Found at i:79669554 original size:54 final size:53
Alignment explanation
Indices: 79669496--79669639 Score: 191
Period size: 54 Copynumber: 2.7 Consensus size: 53
79669486 TACTAAAATG
* * *
79669496 CCCTCGATTTTGAAAATTATTGTTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTT-AAAATTATCGTTTTACCCTTGATTTACAGAATTACCATTTTA
* *
79669550 CCCTC-AGTTTACAGAATTATCGTTTTACCCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTTA-A-AATTATCGTTTTACCCTTGATTTACAGAATTACCATTTTA
*
79669604 CCCTCGATTTTTAAAATTACCGTTTTACCCTTGATT
1 CCCTCGA-TTTTAAAATTATCGTTTTACCCTTGATT
79669640 GTGAAATTAC
Statistics
Matches: 79, Mismatches: 7, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
52 1 0.01
53 5 0.06
54 67 0.85
55 2 0.03
56 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.43
Consensus pattern (53 bp):
CCCTCGATTTTAAAATTATCGTTTTACCCTTGATTTACAGAATTACCATTTTA
Found at i:79669750 original size:81 final size:81
Alignment explanation
Indices: 79669644--79669892 Score: 401
Period size: 81 Copynumber: 3.1 Consensus size: 81
79669634 TTGATTGTGA
*
79669644 AATTACTAAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAA
79669709 TACCCTTATAGGATAG
66 TACCCTTATAGGATAG
* * *
79669725 AATTACCAAAATACCCCTATAGGGTACAATTTTTGAAATACCCCTATAGGGTAGAATTACTGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAA
79669790 TACCCTTATAGGATAG
66 TACCCTTATAGGATAG
* * * *
79669806 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATA-CCCTTTAGGGTAGAAATACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAA
* *
79669870 TACCCCTATAGGGTAG
66 TACCCTTATAGGATAG
79669886 AATTACC
1 AATTACC
79669893 GAGATACTCT
Statistics
Matches: 155, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
80 42 0.27
81 113 0.73
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAA
TACCCTTATAGGATAG
Found at i:79669892 original size:27 final size:27
Alignment explanation
Indices: 79669652--79669899 Score: 309
Period size: 27 Copynumber: 9.2 Consensus size: 27
79669642 GAAATTACTA
* **
79669652 AAATACCCCTGTAGGGTAGAATTTTCG
1 AAATACCCCTATAGGGTAGAATTACCG
*
79669679 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACCG
* * *
79669706 AAATACCCTTATAGGATAGAATTACCA
1 AAATACCCCTATAGGGTAGAATTACCG
* ***
79669733 AAATACCCCTATAGGGTACAATTTTTG
1 AAATACCCCTATAGGGTAGAATTACCG
*
79669760 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACCG
* * *
79669787 AAATACCCTTATAGGATAGAATTACCA
1 AAATACCCCTATAGGGTAGAATTACCG
* *
79669814 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTATAGGGTAGAATTACCG
* *
79669841 AAATA-CCCTTTAGGGTAGAAATACCG
1 AAATACCCCTATAGGGTAGAATTACCG
79669867 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACCG
*
79669894 AGATAC
1 AAATAC
79669900 TCTTGTGCGG
Statistics
Matches: 187, Mismatches: 33, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 23 0.12
27 164 0.88
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAGAATTACCG
Found at i:79670161 original size:27 final size:26
Alignment explanation
Indices: 79670119--79670197 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 26
79670109 GGAGGAAGCG
* *
79670119 TTCTGGTGGTTATGCCACAAATATCTA
1 TTCTGGTGGCTCTGCCAC-AATATCTA
79670146 TTCTGGTGGCTCTGCCACAATATCTGTA
1 TTCTGGTGGCTCTGCCACAATATC--TA
* *
79670174 TT-TGGTGACTCTGTCACAATATCT
1 TTCTGGTGGCTCTGCCACAATATCT
79670198 GTTGACCGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
25 1 0.02
26 6 0.13
27 35 0.76
28 4 0.09
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTA
Found at i:79670198 original size:27 final size:28
Alignment explanation
Indices: 79670131--79670199 Score: 90
Period size: 27 Copynumber: 2.5 Consensus size: 28
79670121 CTGGTGGTTA
*
79670131 TGCCACAAATATC--TATTCTGGTGGCTC
1 TGCCAC-AATATCTGTATTCTGGTGACTC
79670158 TGCCACAATATCTGTATT-TGGTGACTC
1 TGCCACAATATCTGTATTCTGGTGACTC
*
79670185 TGTCACAATATCTGT
1 TGCCACAATATCTGT
79670200 TGACCGATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 6 0.16
27 28 0.74
28 4 0.11
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (28 bp):
TGCCACAATATCTGTATTCTGGTGACTC
Found at i:79670319 original size:22 final size:22
Alignment explanation
Indices: 79670287--79670345 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
79670277 CCCGTTATTA
*
79670287 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
79670309 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
79670331 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
79670346 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:79670532 original size:27 final size:27
Alignment explanation
Indices: 79670510--79670583 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
79670500 TAGGTGGGTT
*
79670510 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
79670537 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
79670564 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
79670584 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:79670737 original size:6 final size:6
Alignment explanation
Indices: 79670726--79670966 Score: 205
Period size: 6 Copynumber: 39.8 Consensus size: 6
79670716 CTGTCACCTA
* *
79670726 ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
* * *
79670774 ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA AATCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* *
79670823 ATTCTG ATTCTG -TTACTA ATGT-TG ATTCTG ATTTTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
* * *
79670871 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
*
79670920 ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTTTG ATTCT
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
79670967 CATTTTGGTT
Statistics
Matches: 191, Mismatches: 22, Indels: 44
0.74 0.09 0.17
Matches are distributed among these distances:
5 16 0.08
6 159 0.83
7 13 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:79670830 original size:79 final size:79
Alignment explanation
Indices: 79670701--79670966 Score: 275
Period size: 91 Copynumber: 3.1 Consensus size: 79
79670691 TTGCATTCAC
* * *
79670701 ATTCTGATTTTGATTCTGTCACCTAATTCTGATTCTG-TTACTAATACTGATTCTGATTCTGATT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATT-CTGATTCTGATTCTGATTCTGATT
79670765 CTGTTACTGATTCTG
65 CTGTTACTGATTCTG
* *
79670780 ATTCTGATTCTGATTCTGTCACCTAAATCTGATTCTGATTCTGATTCTGATTCTGTTACTAATGT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATTCTG--A-T--T-C
79670845 TGATTCTGATTTTGATTCTG-TTACTG
60 TGATTCTG---TT-A--CTGATT-CTG
*
79670871 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGTTACTAATATTGATTCTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTG--A-T--T-CTGATTCTGATTC
79670936 TGATTCTGTTACTGATTCTG
60 TGATTCTGTTACTGATTCTG
*
79670956 ATTTTGATTCT
1 ATTCTGATTCT
79670967 CATTTTGGTT
Statistics
Matches: 157, Mismatches: 9, Indels: 36
0.78 0.04 0.18
Matches are distributed among these distances:
79 48 0.31
80 2 0.01
81 1 0.01
82 1 0.01
84 1 0.01
85 24 0.15
86 2 0.01
87 1 0.01
88 4 0.03
89 1 0.01
90 2 0.01
91 56 0.36
92 1 0.01
93 1 0.01
94 2 0.01
95 1 0.01
96 1 0.01
97 8 0.05
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (79 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATTCTGATTCTGATTC
TGTTACTGATTCTG
Found at i:79677265 original size:40 final size:40
Alignment explanation
Indices: 79677216--79677489 Score: 415
Period size: 40 Copynumber: 6.9 Consensus size: 40
79677206 GAGTTATATG
79677216 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
* *
79677256 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
* *
79677296 TCCGGGCTAAGTCCCGAAGAACATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
*
79677336 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
* * * *
79677376 TCC-GGCTAAGTCTCAAAGAGCATTCGTGCTAGAGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
* *
79677415 TCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
* * *
79677455 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
79677490 ATGTGTATTC
Statistics
Matches: 210, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 35 0.17
40 175 0.83
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
Found at i:79677703 original size:25 final size:25
Alignment explanation
Indices: 79677653--79677703 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
79677643 TGTGTAACAA
* *
79677653 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
79677678 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
79677703 C
1 C
79677704 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:79677828 original size:37 final size:37
Alignment explanation
Indices: 79677778--79677852 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
79677768 ATTCATGTAA
79677778 GACCTCGTATGGAACGAAGGCATTGATTTAAGATGGT
1 GACCTCGTATGGAACGAAGGCATTGATTTAAGATGGT
79677815 GACCTCGTATGGAACGAAGGCATTGATTTAAGATGGT
1 GACCTCGTATGGAACGAAGGCATTGATTTAAGATGGT
79677852 G
1 G
79677853 GATATGTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (37 bp):
GACCTCGTATGGAACGAAGGCATTGATTTAAGATGGT
Found at i:79688091 original size:31 final size:31
Alignment explanation
Indices: 79688050--79688113 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
79688040 CCTTTTCATA
*
79688050 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
79688081 TTTCAAATTTCATATTACTGGGCCGAATCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
79688112 TT
1 TT
79688114 ACTATAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:79688382 original size:23 final size:23
Alignment explanation
Indices: 79688332--79688492 Score: 259
Period size: 23 Copynumber: 7.0 Consensus size: 23
79688322 GCCTCTTTTG
* *
79688332 ATAATTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
79688356 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
*
79688379 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTA
79688402 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
*
79688425 ATAACTGGGGCACAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
*
79688448 ATAACTGGGGCAGAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
*
79688471 ATAACTGGGGCGTAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
79688493 TTCACTTCCT
Statistics
Matches: 129, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
23 112 0.87
24 17 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:79688566 original size:20 final size:20
Alignment explanation
Indices: 79688538--79688608 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
79688528 GCATTTATGA
* *
79688538 ACATCTCATGTGTATATCAT
1 ACATATCATGTGCATATCAT
79688558 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
79688578 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
79688598 ACATACCATGT
1 ACATATCATGT
79688609 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:79692634 original size:29 final size:29
Alignment explanation
Indices: 79692601--79692668 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 29
79692591 TTTGTTCTTG
79692601 AATTTTTGATAAAATGAGCTATTTG-GG-CT
1 AATTTTTGA-AAAATGAGCT-TTTGAGGACT
* *
79692630 AATTTGTG-AAAATGAGGTTTTGAAGGACT
1 AATTTTTGAAAAATGAGCTTTTG-AGGACT
79692659 AATTTTTGAA
1 AATTTTTGAA
79692669 TTTAAAATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
26 4 0.12
27 9 0.28
28 2 0.06
29 16 0.50
30 1 0.03
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (29 bp):
AATTTTTGAAAAATGAGCTTTTGAGGACT
Found at i:79694188 original size:29 final size:29
Alignment explanation
Indices: 79694156--79694216 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
79694146 ATACCCTCCG
* *
79694156 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
79694185 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
79694214 AGC
1 AGC
79694217 ACCCACACTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.21, C:0.33, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:79702822 original size:27 final size:27
Alignment explanation
Indices: 79702792--79702850 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 27
79702782 ATTTTTGATG
79702792 AAATGAGCTATTTG-GG-CTAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGT-A
*
79702819 AAATGAGGTTTTGAAGGACTAATTTGTA
1 AAATGAGCTTTTG-AGGACTAATTTGTA
79702847 AAAT
1 AAAT
79702851 TAACATGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 4 0.14
27 8 0.29
28 7 0.25
29 9 0.32
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.36
Consensus pattern (27 bp):
AAATGAGCTTTTGAGGACTAATTTGTA
Found at i:79703382 original size:42 final size:42
Alignment explanation
Indices: 79703247--79703414 Score: 142
Period size: 42 Copynumber: 3.9 Consensus size: 42
79703237 AAAGAACGTT
* * *
79703247 GGCATTGATCTGAATTATCGTGTAAGACCGTGTCTGGGACACA
1 GGCATCGATCTG-ATTTTCGTGTAAGACCATGTCTGGGACACA
* **
79703290 GGCATCGATTTGAAATTTAAGTGTAAGACCATGTCTGGGACATC-
1 GGCATCGATCTG--ATTTTCGTGTAAGACCATGTCTGGGACA-CA
* * * *
79703334 GACATCGTATCTG-TTTTCGTATAAGACCCTGTCTGGGACAGA
1 GGCATCG-ATCTGATTTTCGTGTAAGACCATGTCTGGGACACA
* * * *
79703376 GGCATCGATACTGAATTACATGTAAGACCATATCTGGGA
1 GGCATCGAT-CTGATTTTCGTGTAAGACCATGTCTGGGA
79703415 AGTAGGCATT
Statistics
Matches: 99, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.02
42 32 0.32
43 29 0.29
44 31 0.31
45 5 0.05
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (42 bp):
GGCATCGATCTGATTTTCGTGTAAGACCATGTCTGGGACACA
Found at i:79703888 original size:12 final size:13
Alignment explanation
Indices: 79703871--79703902 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
79703861 GCAAATGTTA
79703871 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
79703883 AGTTTTGATGCAT
1 AGTTTTGATGCAT
79703896 -GTTTTGA
1 AGTTTTGA
79703903 AATGTGCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:79705390 original size:37 final size:38
Alignment explanation
Indices: 79705290--79705391 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 38
79705280 ATATATTTGG
79705290 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA
1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA
* *
79705326 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA
1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA
*
79705368 TAATAATAATATCTACAATAAAAG
1 TAATAATAATATCTAAAATAAAAG
79705392 AAAATATTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 7 0.13
40 3 0.05
41 3 0.05
42 10 0.18
43 13 0.24
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (38 bp):
TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA
Found at i:79705613 original size:25 final size:25
Alignment explanation
Indices: 79705558--79705613 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
79705548 CTTTGTAATA
*
79705558 ATAATATATACACAATATGGTATTT
1 ATAATATATACACAATATGGTATAT
* * *
79705583 AAAATATATATATATATAT-GTATAT
1 ATAATATATACACA-ATATGGTATAT
79705608 ATAATA
1 ATAATA
79705614 GTATTTAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.50, C:0.04, G:0.05, T:0.41
Consensus pattern (25 bp):
ATAATATATACACAATATGGTATAT
Found at i:79706195 original size:34 final size:35
Alignment explanation
Indices: 79706149--79706249 Score: 154
Period size: 34 Copynumber: 2.9 Consensus size: 35
79706139 GGTGGCTAGG
79706149 TTTTT-TTATTTTTTATTTT-GGTTAGGTTTTTCT
1 TTTTTCTTATTTTTTATTTTGGGTTAGGTTTTTCT
*
79706182 TTTTTCTTCTTTTTT-TTTTGGGTTAGGTTTTTCT
1 TTTTTCTTATTTTTTATTTTGGGTTAGGTTTTTCT
*
79706216 TTTTTCTTTTTTTTTATTTTAGGGTTAGGTTTTT
1 TTTTTCTTATTTTTTATTTT-GGGTTAGGTTTTT
79706250 TTTGGGGGGC
Statistics
Matches: 62, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
33 9 0.15
34 36 0.58
35 4 0.06
36 13 0.21
ACGTcount: A:0.07, C:0.05, G:0.14, T:0.74
Consensus pattern (35 bp):
TTTTTCTTATTTTTTATTTTGGGTTAGGTTTTTCT
Found at i:79706250 original size:31 final size:29
Alignment explanation
Indices: 79706149--79706252 Score: 75
Period size: 36 Copynumber: 3.2 Consensus size: 29
79706139 GGTGGCTAGG
*
79706149 TTTTTTTATTTTTTATTTT-GGTTAGGTTTT
1 TTTTTTTTTTTTTTATTTTGGGTTAGG--TT
*
79706179 TCTTTTTTCTTCTTTTTTTTTTGGGTTAGGTTTTTCT
1 T-TTTTTT-TT-TTTTTATTTTGGGTTAGG----T-T
79706216 TTTTTCTTTTTTTTTATTTTAGGGTTAGGTT
1 TTTTT-TTTTTTTTTATTTT-GGGTTAGGTT
79706247 TTTTTT
1 TTTTTT
79706253 GGGGGGCTTA
Statistics
Matches: 62, Mismatches: 3, Indels: 18
0.75 0.04 0.22
Matches are distributed among these distances:
30 2 0.03
31 12 0.19
32 2 0.03
33 9 0.15
34 7 0.11
35 9 0.15
36 17 0.27
37 4 0.06
ACGTcount: A:0.07, C:0.05, G:0.13, T:0.75
Consensus pattern (29 bp):
TTTTTTTTTTTTTTATTTTGGGTTAGGTT
Found at i:79713810 original size:71 final size:71
Alignment explanation
Indices: 79713726--79713889 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
79713716 CGATTTGTCT
79713726 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
79713791 CTTTCA
66 CTTTCA
* *
79713797 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
79713862 CTTTCA
66 CTTTCA
79713868 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
79713890 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:79713927 original size:71 final size:70
Alignment explanation
Indices: 79713726--79713923 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
79713716 CGATTTGTCT
* * * * *
79713726 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
79713791 CTTTCA
65 CTTTCA
* * * *
79713797 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
79713862 CTTTCA
65 CTTTCA
* *
79713868 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
79713924 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:79721347 original size:69 final size:71
Alignment explanation
Indices: 79721265--79721426 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
79721255 CGATTTGTCT
79721265 CGTAGCTCTCTTGTCTACATGGTGTCC-TCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
79721328 CTTTCA
66 CTTTCA
79721334 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
79721399 CTTTCA
66 CTTTCA
79721405 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
79721427 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 27 0.30
70 24 0.26
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:79721464 original size:71 final size:70
Alignment explanation
Indices: 79721265--79721460 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
79721255 CGATTTGTCT
* * *
79721265 CGTAGCTCTCTTGTCTACATGGTGT-CCTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
79721328 CTTTCA
65 CTTTCA
* * * *
79721334 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
79721399 CTTTCA
65 CTTTCA
* *
79721405 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
79721461 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 26 0.22
70 26 0.22
71 43 0.37
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:79727397 original size:8 final size:8
Alignment explanation
Indices: 79727380--79727416 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
79727370 TACCAAAGTG
*
79727380 GGCCCGTT
1 GGCCCATT
79727388 GGCCCATT
1 GGCCCATT
*
79727396 GGCCCGTT
1 GGCCCATT
79727404 GGCCCATT
1 GGCCCATT
79727412 GGCCC
1 GGCCC
79727417 GTTTTCGGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.05, C:0.41, G:0.32, T:0.22
Consensus pattern (8 bp):
GGCCCATT
Found at i:79727401 original size:16 final size:16
Alignment explanation
Indices: 79727380--79727419 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
79727370 TACCAAAGTG
79727380 GGCCCGTTGGCCCATT
1 GGCCCGTTGGCCCATT
79727396 GGCCCGTTGGCCCATT
1 GGCCCGTTGGCCCATT
79727412 GGCCCGTT
1 GGCCCGTT
79727420 TTCGGCCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.05, C:0.38, G:0.33, T:0.25
Consensus pattern (16 bp):
GGCCCGTTGGCCCATT
Found at i:79731475 original size:19 final size:20
Alignment explanation
Indices: 79731451--79731488 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79731441 GGTACCACCA
79731451 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
79731470 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
79731489 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:79734458 original size:19 final size:20
Alignment explanation
Indices: 79734434--79734471 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79734424 GGTACCACCA
79734434 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
79734453 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
79734472 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:79734766 original size:46 final size:46
Alignment explanation
Indices: 79734699--79734819 Score: 206
Period size: 46 Copynumber: 2.6 Consensus size: 46
79734689 CGCCCCTAAG
* **
79734699 TGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAA
*
79734745 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAA
79734791 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
79734820 ATGCTCAACC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAA
Found at i:79734839 original size:46 final size:45
Alignment explanation
Indices: 79734697--79734839 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 45
79734687 CCCGCCCCTA
* * * *
79734697 AGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
* *
79734742 AAATGAACTCGGACTCAACTCAACGAGTTCGG--GCATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC--TCACCATCC-T
79734788 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
79734835 AGTGA
1 AGTGA
79734840 CATGTCACTT
Statistics
Matches: 86, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
44 1 0.01
46 77 0.90
47 1 0.01
48 7 0.08
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:79735276 original size:30 final size:30
Alignment explanation
Indices: 79735242--79735301 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
79735232 ATTTAATACG
79735242 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
79735272 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
79735302 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:79740210 original size:27 final size:26
Alignment explanation
Indices: 79740162--79740222 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
79740152 GCGAGGCTGC
*
79740162 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
79740189 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
79740215 CAAATATT
1 CAGATATT
79740223 TATATATATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:79743212 original size:18 final size:18
Alignment explanation
Indices: 79743189--79743232 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
79743179 AACTTGAGTT
79743189 CCATTAATGGTAATTAGA
1 CCATTAATGGTAATTAGA
79743207 CCATTAATGGTAATTAGA
1 CCATTAATGGTAATTAGA
79743225 CCATTAAT
1 CCATTAAT
79743233 AAATTGCGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (18 bp):
CCATTAATGGTAATTAGA
Found at i:79743307 original size:18 final size:18
Alignment explanation
Indices: 79743286--79743326 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
79743276 CAAATTTTTG
*
79743286 CATTAATGGTAATTTGAC
1 CATTAATGGTAATTAGAC
79743304 CATTAATGGTAATTAGAC
1 CATTAATGGTAATTAGAC
79743322 CATTA
1 CATTA
79743327 TACTTCTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
CATTAATGGTAATTAGAC
Found at i:79752714 original size:12 final size:12
Alignment explanation
Indices: 79752697--79752723 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
79752687 TTATTATGCA
79752697 ATTATTGTTATT
1 ATTATTGTTATT
79752709 ATTATTGTTATT
1 ATTATTGTTATT
79752721 ATT
1 ATT
79752724 GAGTTATACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (12 bp):
ATTATTGTTATT
Found at i:79753078 original size:47 final size:47
Alignment explanation
Indices: 79753019--79753136 Score: 200
Period size: 47 Copynumber: 2.5 Consensus size: 47
79753009 GCATTGGCAC
79753019 TAAGACAAGGATACCATGTAAGACCATATTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATATTTGGAACATGGCATTTGG
* *
79753066 TAAGACAAGGATAGCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATATTTGGAACATGGCATTTGG
* *
79753113 TAAGATAAGGATATCATGTAAGAC
1 TAAGACAAGGATACCATGTAAGAC
79753137 TATGCCAAGG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATATTTGGAACATGGCATTTGG
Found at i:79753205 original size:54 final size:54
Alignment explanation
Indices: 79753119--79753335 Score: 224
Period size: 54 Copynumber: 4.0 Consensus size: 54
79753109 TTGGTAAGAT
* * *
79753119 AAGGATATCATGTAAGACTATGCCAAGGCATGGCATTGATAAGTTCTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
* * * * *
79753173 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTCTAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGG-A
* * * *
79753229 AAGG-TCCCATGTAAGACCATGCCAAG-CATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
** * * * * *
79753280 AAGGATACCACATAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
79753334 AA
1 AA
79753336 AAGGTTCTCG
Statistics
Matches: 137, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
51 4 0.03
52 23 0.17
53 17 0.12
54 63 0.46
55 25 0.18
56 5 0.04
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
Found at i:79753340 original size:107 final size:109
Alignment explanation
Indices: 79753127--79753336 Score: 273
Period size: 107 Copynumber: 2.0 Consensus size: 109
79753117 ATAAGGATAT
* * **
79753127 CATGTAAGACTATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAACCACATAAGACC
* * ***
79753192 ATGTCAAGACATGGCATTGATGAGTTACTCTAAGGAAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
* * * *
79753236 CATGTAAGACCATGCCAA-GCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACATAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAACCACATAAGACC
*
79753299 ATGTCAAGACATGGCAATGGTAAGTT-CAAAAAGGAAAA
66 ATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAA
79753337 AGGTTCTCGA
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
106 9 0.10
107 44 0.51
108 17 0.20
109 17 0.20
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAACCACATAAGACC
ATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
Found at i:79761218 original size:41 final size:41
Alignment explanation
Indices: 79761173--79761290 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
79761163 TGAAAGATAA
79761173 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
79761214 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79761244 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79761285 ATGTAG
1 ATGTAG
79761291 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:79761229 original size:71 final size:71
Alignment explanation
Indices: 79761141--79761304 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
79761131 GAGATGTATC
79761141 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79761206 AGGACA
66 AGGACA
79761212 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79761277 AGGACA
66 AGGACA
79761283 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
79761305 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:79763783 original size:27 final size:27
Alignment explanation
Indices: 79763718--79763885 Score: 232
Period size: 27 Copynumber: 6.3 Consensus size: 27
79763708 TTTGGTTTAC
79763718 AAAATTACCAAAATACCC-T-GCTTTGT
1 AAAATTACCAAAATACCCTTAG-TTTGT
* * *
79763744 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
79763771 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
79763798 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
79763825 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
79763852 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
79763879 GAAATTA
1 AAAATTA
79763886 TTGAAATACC
Statistics
Matches: 128, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 17 0.13
27 110 0.86
28 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAGTTTGT
Found at i:79763892 original size:27 final size:27
Alignment explanation
Indices: 79763718--79763939 Score: 211
Period size: 27 Copynumber: 8.3 Consensus size: 27
79763708 TTTGGTTTAC
*
79763718 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTATCAAAATACCCCTAG-TTTGT
* * *
79763744 AAAATTA-CTAAAATACCCTTGGTTTAT
1 AAAATTATC-AAAATACCCCTAGTTTGT
*
79763771 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTATCAAAATACCCCTAGTTTGT
* *
79763798 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTATCAAAATACCCCTAGTTTGT
79763825 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTATCAAAATACCCCTAGTTTGT
* *
79763852 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTATCAAAATACCCCTAGTTTGT
* ** * **
79763879 GAAATTATTGAAATA-CCCTCGACCTGT
1 AAAATTATCAAAATACCCCTAG-TTTGT
** *
79763906 AAAATTATTGAAATA-CCCTCGATTTGT
1 AAAATTATCAAAATACCCCTAG-TTTGT
79763933 AAAATTA
1 AAAATTA
79763940 CCGTTTTACC
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
25 1 0.01
26 17 0.10
27 150 0.88
28 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTATCAAAATACCCCTAGTTTGT
Found at i:79763893 original size:81 final size:81
Alignment explanation
Indices: 79763718--79763941 Score: 258
Period size: 81 Copynumber: 2.8 Consensus size: 81
79763708 TTTGGTTTAC
* * * *
79763718 AAAATTACCAAAATACCCT-GCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACCA
1 AAAATTACCAAAATACCCTAGATTTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACCA
*
79763781 AAATACCCCTAGTTTGT
65 AAATACCCCTAATTTGT
79763798 AAAATTACCAAAATACCCTTAG-TTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAAATTACCAAAATACCC-TAGATTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
79763862 AAATACCCCTAATTTGT
65 AAATACCCCTAATTTGT
* *** * ** ** *
79763879 GAAATTATTGAAATACCCTCGACCTGTAAAATTATTGAAATA-CCCTCGATTTGTAAAATTACC
1 AAAATTACCAAAATACCCTAGATTTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTACC
79763942 GTTTTACCCT
Statistics
Matches: 125, Mismatches: 14, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
80 25 0.20
81 98 0.78
82 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTAGATTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:79763949 original size:27 final size:27
Alignment explanation
Indices: 79763919--79764212 Score: 351
Period size: 27 Copynumber: 10.9 Consensus size: 27
79763909 ATTATTGAAA
* *
79763919 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
79763946 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
79763973 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
79764000 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
79764027 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * *
79764054 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* *
79764081 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
79764108 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
79764135 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
79764162 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
79764189 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTATAGAATTACCG
79764213 AAATACCCTC
Statistics
Matches: 239, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 235 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:79764219 original size:27 final size:27
Alignment explanation
Indices: 79764081--79764329 Score: 104
Period size: 27 Copynumber: 9.1 Consensus size: 27
79764071 ATTATCGTTT
* * * ***
79764081 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGAAA
* * ***
79764108 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGAAA
* * ***
79764135 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGAAA
* * * * ***
79764162 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGAAA
*
79764189 TACCCTCGATTTACAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCGAAA
* * *
79764216 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCGAAA
* * *
79764243 TACCC-CTGATTTACAAAGTTACAGAAA
1 TACCCTC-GATTTATAAAATTACCGAAA
* * ** *
79764270 TACCCTTGACTTTTTAAAAATTATAGAAG
1 TACCCTCGA-TTTAT-AAAATTACCGAAA
* * * * *
79764299 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACCGAAA
79764326 TACC
1 TACC
79764330 TTTGGTTTGT
Statistics
Matches: 184, Mismatches: 34, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 160 0.87
28 6 0.03
29 17 0.09
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGAAA
Found at i:79764334 original size:27 final size:26
Alignment explanation
Indices: 79764282--79764337 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
79764272 CCCTTGACTT
*
79764282 TTTAAAAATTATAGAAGTACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
79764308 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
79764335 TTT
1 TTT
79764338 GTTGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:79764455 original size:27 final size:26
Alignment explanation
Indices: 79764390--79764455 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
79764380 TACCCCTAAA
*
79764390 AGGTAAAAAGACCGTAAAGCCCCTGT
1 AGGTAAAATGACCGTAAAGCCCCTGT
*
79764416 AGGTTAAAGTGACCGTAATA-CCCCTGT
1 AGG-TAAAATGACCGTAA-AGCCCCTGT
79764443 ATGGTAAAATGAC
1 A-GGTAAAATGAC
79764456 GAATATGCCC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 3 0.09
27 28 0.82
28 3 0.09
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
AGGTAAAATGACCGTAAAGCCCCTGT
Found at i:79765642 original size:25 final size:25
Alignment explanation
Indices: 79765613--79765660 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79765603 TTATAATATG
* * *
79765613 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79765638 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79765661 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79765729 original size:20 final size:20
Alignment explanation
Indices: 79765704--79765762 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
79765694 TAAATATGGT
79765704 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
79765724 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
79765744 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
79765763 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:79765840 original size:24 final size:24
Alignment explanation
Indices: 79765813--79765941 Score: 197
Period size: 24 Copynumber: 5.4 Consensus size: 24
79765803 GAGGAAGTGA
79765813 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79765837 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79765861 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
79765884 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * * *
79765908 GAAAGGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATC
79765932 AAAAGAGGCT
1 AAAAG-GGCT
79765942 AGGCATCCAG
Statistics
Matches: 99, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
23 23 0.23
24 72 0.73
25 4 0.04
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:79765906 original size:47 final size:47
Alignment explanation
Indices: 79765813--79765941 Score: 195
Period size: 47 Copynumber: 2.7 Consensus size: 47
79765803 GAGGAAGTGA
79765813 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
79765861 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
79765908 GAAAGGGCTTTTGCCCCAATTATTAAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
79765942 AGGCATCCAG
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
47 42 0.56
48 29 0.39
49 4 0.05
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:79766197 original size:31 final size:31
Alignment explanation
Indices: 79766146--79766239 Score: 145
Period size: 31 Copynumber: 3.1 Consensus size: 31
79766136 CATTTACAGT
*
79766146 AAAGGCTTCGG-CTAGTAATATGAAATCTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATCTGA
79766176 AAAGGCTTCGGCCCAGTAATATGAAATCTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATCTGA
* * *
79766207 AAAGGCTTCAGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATCTGA
79766238 AA
1 AA
79766240 TATGAAAAGG
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 11 0.19
31 48 0.81
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATCTGA
Found at i:79772501 original size:40 final size:39
Alignment explanation
Indices: 79772445--79772592 Score: 147
Period size: 40 Copynumber: 3.7 Consensus size: 39
79772435 GGATATAGCG
* * *
79772445 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTT-TGATA
* * * *
79772485 GCTCGCATAAATGCCTTCGGGAC-TAATCCCGGATTTGAGA
1 ACTCGCACAAATGCCTTCGGGACAT-AGCCCGG-TTTGATA
* *
79772525 ACTCGCACAAATGCCTTCGGGA-ATTAACCCGGTTTTGGTA
1 ACTCGCACAAATGCCTTCGGGACA-TAGCCCGG-TTTGATA
*
79772565 ACTCGCACAAATGCCTTCGGGACTTAGC
1 ACTCGCACAAATGCCTTCGGGACATAGC
79772593 ACGGATACCA
Statistics
Matches: 88, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
39 1 0.01
40 84 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTTGATA
Found at i:79772598 original size:80 final size:80
Alignment explanation
Indices: 79772445--79772598 Score: 193
Period size: 80 Copynumber: 1.9 Consensus size: 80
79772435 GGATATAGCG
* * * *
79772445 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATAGCTCGCATAAATGCCTTCGGGACTA
1 ACTCGCACAAAAGCCTTCGGGACATAACCCGGTTATAATAACTCGCACAAATGCCTTCGGGACTA
* *
79772510 ATCCCGGATTTGAGA
66 AGCACGGATTTGAGA
* * **
79772525 ACTCGCACAAATGCCTTCGGGA-ATTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAAAGCCTTCGGGACA-TAACCCGGTTATAATAACTCGCACAAATGCCTTCGGGACT
*
79772589 TAGCACGGAT
65 AAGCACGGAT
79772599 ACCATTCAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
79 1 0.02
80 61 0.98
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAAAGCCTTCGGGACATAACCCGGTTATAATAACTCGCACAAATGCCTTCGGGACTA
AGCACGGATTTGAGA
Found at i:79776490 original size:30 final size:29
Alignment explanation
Indices: 79776456--79776531 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 29
79776446 CTGGAAATAT
* *
79776456 ATGGCACTATAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTATAGTGTGCGAGCT-AAAGCGC
* * *
79776486 ATGGCACTGT-GTGTGCGGGCTAAATCGC
1 ATGGCACTATAGTGTGCGAGCTAAAGCGC
79776514 ATGGCACTA-AGTGTGCGA
1 ATGGCACTATAGTGTGCGA
79776532 AATCGAGTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 19 0.50
29 10 0.26
30 9 0.24
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTATAGTGTGCGAGCTAAAGCGC
Found at i:79781029 original size:27 final size:27
Alignment explanation
Indices: 79780978--79781079 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
79780968 TTAGTTTACT
* *
79780978 AAATTACCGAAATACCCT-TAGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
79781005 AAAATACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
79781032 AATTTACCGAAATACCTTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
79781059 AAATTACT-AAAGCACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
79781080 CTTACAGAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.05
27 57 0.93
28 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:79781058 original size:54 final size:53
Alignment explanation
Indices: 79780977--79781079 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 53
79780967 TTTAGTTTAC
* *
79780977 TAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAA-TACCCTCGATTTG
1 TAAATTACCGAAATACCCTTAGCTTGTAAAAATACT-AAAGCACCCTCGATTTG
* *
79781030 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTACTAAAGCACCCTCGA
1 TAAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACTAAAGCACCCTCGA
79781080 CTTACAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
53 12 0.28
54 31 0.72
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (53 bp):
TAAATTACCGAAATACCCTTAGCTTGTAAAAATACTAAAGCACCCTCGATTTG
Found at i:79781093 original size:54 final size:53
Alignment explanation
Indices: 79780973--79781094 Score: 122
Period size: 54 Copynumber: 2.2 Consensus size: 53
79780963 ATACTTTAGT
* * *
79780973 TTACTAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGAT
1 TTAC-AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAACACCCTCGAC
** * *
79781027 TTGTAAATTTACCGAAATA-CCTTCGACTTGTAAAATTACT-AAAGCACCCTCGAC
1 TTACAAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACTGAAA-CACCCTCGAC
79781081 TTACAGAATTACCG
1 TTACA-AATTACCG
79781095 TTTTACCCCT
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
53 11 0.20
54 42 0.76
55 2 0.04
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (53 bp):
TTACAAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAACACCCTCGAC
Found at i:79781102 original size:27 final size:27
Alignment explanation
Indices: 79781072--79781470 Score: 443
Period size: 27 Copynumber: 14.8 Consensus size: 27
79781062 TTACTAAAGC
*
79781072 ACCCTCGACTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
* *
79781099 ACCC-CTAATTTACATAATTACCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
* *
79781126 ACCC-CTGATTTACATAATTATCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
*
79781153 ACCCTCGACTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
* *
79781180 ACCC-CTAATTTACATAATTACCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
* *
79781207 ACCC-CTGATTTACATAATTATCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
*
79781234 ACCCTTGATTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
* *
79781261 ACCC-CTAATTTACATAATTACCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
* *
79781288 ACCC-CTGATTTACATAATTATCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
*
79781315 ACCCTCGACTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
*
79781342 ACCCTCGATTTACTA-AATTACTGTTTT
1 ACCCTCGATTTAC-AGAATTACCGTTTT
* * **
79781369 ACCCTTGATTTATAGAATTACTATTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
* * *
79781396 ACCCTTGATTTATAGAATTACTGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
* *
79781423 ACCCTTGATTTACAGAATTACTGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
*
79781450 ACCCTCGATTTACAAAATTAC
1 ACCCTCGATTTACAGAATTAC
79781471 TAAAATACCC
Statistics
Matches: 331, Mismatches: 33, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
26 3 0.01
27 325 0.98
28 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.41
Consensus pattern (27 bp):
ACCCTCGATTTACAGAATTACCGTTTT
Found at i:79781479 original size:27 final size:27
Alignment explanation
Indices: 79781341--79781614 Score: 119
Period size: 27 Copynumber: 10.1 Consensus size: 27
79781331 ATTACCGTTT
* * ****
79781341 TACCCTCGATTTACTAAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
* * ***
79781368 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* * ****
79781395 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ****
79781422 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
79781449 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *** *
79781476 TACCCTTGGTTTGTGAAATTACCGAAAA
1 TACCCTTGATTTACAAAATTA-CTAAAA
** *
79781504 -ACCCTCAATTT--AAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* * *
79781528 TACCCCTAATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
79781555 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
79781584 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
79781611 TACC
1 TACC
79781615 TTTGGTTTGT
Statistics
Matches: 203, Mismatches: 33, Indels: 22
0.79 0.13 0.09
Matches are distributed among these distances:
24 5 0.02
25 15 0.07
26 1 0.00
27 151 0.74
28 12 0.06
29 19 0.09
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:79781483 original size:81 final size:81
Alignment explanation
Indices: 79781072--79781469 Score: 579
Period size: 81 Copynumber: 4.9 Consensus size: 81
79781062 TTACTAAAGC
79781072 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
1 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
79781137 ACATAATTATCGTTTT
66 ACATAATTATCGTTTT
79781153 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
1 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
79781218 ACATAATTATCGTTTT
66 ACATAATTATCGTTTT
* *
79781234 ACCCTTGATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
1 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
79781299 ACATAATTATCGTTTT
66 ACATAATTATCGTTTT
* * *
79781315 ACCCTCGACTTACAGAATTACCGTTTTA-CCCTCGATTTAC-TAAATTACTGTTTTACCCTTGAT
1 ACCCTCGACTTACAGAATTACCGTTTTACCCCT-AATTTACAT-AATTACCGTTTTACCCCTGAT
* * *
79781378 TTATAGAATTA-CTATTTT
64 TTACATAATTATC-GTTTT
* * * * * * * *
79781396 ACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTA-CCCTCGATT
1 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCT-GATT
*
79781460 TACAAAATTA
65 TACATAATTA
79781470 CTAAAATACC
Statistics
Matches: 292, Mismatches: 19, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
80 9 0.03
81 280 0.96
82 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (81 bp):
ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
ACATAATTATCGTTTT
Found at i:79781508 original size:81 final size:81
Alignment explanation
Indices: 79781342--79781522 Score: 181
Period size: 81 Copynumber: 2.3 Consensus size: 81
79781332 TTACCGTTTT
* * * ***
79781342 ACCCTCGATTTACTAAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTTGATTT
1 ACCCTCGATTTACTAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
* ****
79781407 ATAGAATTACTGTTTT
66 ATAGAATTACCGAAAA
* *
79781423 ACCCTTGATTTAC-AGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTT
1 ACCCTCGATTTACTA-AATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATT
*
79781487 TGT-GAAATTACCGAAAA
65 TATAG-AATTACCGAAAA
*
79781504 ACCCTCAATTTA--AAATTAC
1 ACCCTCGATTTACTAAATTAC
79781523 CAAAATACCC
Statistics
Matches: 82, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
79 6 0.07
80 3 0.04
81 73 0.89
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (81 bp):
ACCCTCGATTTACTAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
ATAGAATTACCGAAAA
Found at i:79781532 original size:25 final size:27
Alignment explanation
Indices: 79781491--79781560 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 27
79781481 TTGGTTTGTG
79781491 AAATTACCGAAAA-ACCCTC-AATTTA-
1 AAATTACC-AAAATACCCTCTAATTTAC
79781516 AAATTACCAAAATACCC-CTAATTTAC
1 AAATTACCAAAATACCCTCTAATTTAC
79781542 AAAGTTA-CAGAAATACCCT
1 AAA-TTACCA-AAATACCCT
79781561 TGACTTTCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
24 5 0.13
25 18 0.46
26 5 0.13
27 11 0.28
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.24
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCTAATTTAC
Found at i:79781619 original size:27 final size:27
Alignment explanation
Indices: 79781571--79781622 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
79781561 TGACTTTCTA
79781571 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
79781598 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
79781623 GTTGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:79782926 original size:25 final size:25
Alignment explanation
Indices: 79782897--79782944 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79782887 TTATAATATG
* * *
79782897 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79782922 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79782945 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79783020 original size:19 final size:20
Alignment explanation
Indices: 79782988--79783045 Score: 100
Period size: 19 Copynumber: 3.0 Consensus size: 20
79782978 TAAATATGGT
79782988 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
79783008 ATGTATG-TATGCACATGAT
1 ATGTATGATATGCACATGAA
79783027 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
79783046 GGTAATCATA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:79783123 original size:24 final size:24
Alignment explanation
Indices: 79783096--79783238 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
79783086 GAGGAAGTGA
79783096 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79783120 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79783144 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
79783167 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
79783191 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
79783215 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79783239 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:79783189 original size:47 final size:47
Alignment explanation
Indices: 79783096--79783238 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
79783086 GAGGAAGTGA
79783096 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
79783144 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
79783191 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
79783239 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:79783212 original size:71 final size:72
Alignment explanation
Indices: 79783096--79783239 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
79783086 GAGGAAGTGA
*
79783096 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
79783159 CCAGTTAT
65 CCAGTTAT
** * *
79783167 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
79783232 CAGTTAT
66 CAGTTAT
79783239 A
1 A
79783240 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:79783465 original size:31 final size:31
Alignment explanation
Indices: 79783430--79783524 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
79783420 CGTTTACAGT
79783430 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79783461 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
79783492 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79783523 AA
1 AA
79783525 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:79785950 original size:27 final size:28
Alignment explanation
Indices: 79785920--79786009 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 28
79785910 TTTAGTTTAC
79785920 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
79785947 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
79785974 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
79786001 TAAAATTAC
1 TAAAATTAC
79786010 TAAAGCACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:79786002 original size:54 final size:54
Alignment explanation
Indices: 79785920--79786023 Score: 131
Period size: 54 Copynumber: 1.9 Consensus size: 54
79785910 TTTAGTTTAC
* *
79785920 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAA-TACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACT-AAAGCACCCTCGATTTG
* * *
79785974 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTACTAAAGCACCCTCGA
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTAAAGCACCCTCGA
79786024 CTTACAGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
53 8 0.19
54 35 0.81
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTAAAGCACCCTCGATTTG
Found at i:79786023 original size:27 final size:26
Alignment explanation
Indices: 79785944--79786026 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
79785934 TACCCTTAGT
* *
79785944 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACT-AAATACCCTCGAC
* * *
79785971 TTGTAAATTTACCGAAATACCTTCGAC
1 TTGTAAAATTA-CTAAATACCCTCGAC
*
79785998 TTGTAAAATTACTAAAGCACCCTCGAC
1 TTGTAAAATTACTAAA-TACCCTCGAC
79786025 TT
1 TT
79786027 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
26 4 0.09
27 40 0.89
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (26 bp):
TTGTAAAATTACTAAATACCCTCGAC
Found at i:79786037 original size:54 final size:53
Alignment explanation
Indices: 79785922--79786038 Score: 121
Period size: 54 Copynumber: 2.2 Consensus size: 53
79785912 TAGTTTACTA
* * * **
79785922 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAACACCCTCGACTTAC
* *
79785975 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTACT-AAAGCACCCTCGACTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACTGAAA-CACCCTCGACTTAC
79786029 AGAATTACCG
1 A-AATTACCG
79786039 TTTTACCCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
53 11 0.21
54 40 0.75
55 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAACACCCTCGACTTAC
Found at i:79786046 original size:27 final size:27
Alignment explanation
Indices: 79786016--79786413 Score: 443
Period size: 27 Copynumber: 14.8 Consensus size: 27
79786006 TTACTAAAGC
*
79786016 ACCCTCGACTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
* *
79786043 ACCC-CTAATTTACATAATTACCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
* *
79786070 ACCC-CTGATTTACATAATTATCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
*
79786097 ACCCTCGACTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
* *
79786124 ACCC-CTAATTTACATAATTACCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
* *
79786151 ACCC-CTGATTTACATAATTATCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
79786178 ACCCT-GATTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
* *
79786204 ACCC-CTAATTTACATAATTACCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
* *
79786231 ACCC-CTGATTTACATAATTATCGTTTT
1 ACCCTC-GATTTACAGAATTACCGTTTT
*
79786258 ACCCTCGACTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
*
79786285 ACCCTCGATTTACTA-AATTACTGTTTT
1 ACCCTCGATTTAC-AGAATTACCGTTTT
* * **
79786312 ACCCTTGATTTATAGAATTACTATTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
* * *
79786339 ACCCTTGATTTATAGAATTACTGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
* *
79786366 ACCCTTGATTTACAGAATTACTGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTT
*
79786393 ACCCTCGATTTACAAAATTAC
1 ACCCTCGATTTACAGAATTAC
79786414 TAAAATACCC
Statistics
Matches: 331, Mismatches: 31, Indels: 18
0.87 0.08 0.05
Matches are distributed among these distances:
26 26 0.08
27 302 0.91
28 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.41
Consensus pattern (27 bp):
ACCCTCGATTTACAGAATTACCGTTTT
Found at i:79786422 original size:27 final size:27
Alignment explanation
Indices: 79786284--79786557 Score: 115
Period size: 27 Copynumber: 10.1 Consensus size: 27
79786274 ATTACCGTTT
* * ****
79786284 TACCCTCGATTTACTAAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
* * ***
79786311 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* * ****
79786338 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ****
79786365 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
79786392 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *** **
79786419 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
** ** *
79786446 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* * * *
79786472 TACCCCTAATTTATAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
79786499 TACCCTTGACTTT-CTAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC-AAAATTACTA-AAA
* * *
79786527 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
79786554 TACC
1 TACC
79786558 TTTGGTTTGT
Statistics
Matches: 204, Mismatches: 36, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
26 22 0.11
27 159 0.78
28 23 0.11
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:79786426 original size:81 final size:81
Alignment explanation
Indices: 79786016--79786412 Score: 579
Period size: 81 Copynumber: 4.9 Consensus size: 81
79786006 TTACTAAAGC
79786016 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
1 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
79786081 ACATAATTATCGTTTT
66 ACATAATTATCGTTTT
79786097 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
1 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
79786162 ACATAATTATCGTTTT
66 ACATAATTATCGTTTT
*
79786178 ACCCT-GATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
1 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
79786242 ACATAATTATCGTTTT
66 ACATAATTATCGTTTT
* * *
79786258 ACCCTCGACTTACAGAATTACCGTTTTA-CCCTCGATTTAC-TAAATTACTGTTTTACCCTTGAT
1 ACCCTCGACTTACAGAATTACCGTTTTACCCCT-AATTTACAT-AATTACCGTTTTACCCCTGAT
* * *
79786321 TTATAGAATTA-CTATTTT
64 TTACATAATTATC-GTTTT
* * * * * * * *
79786339 ACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTA-CCCTCGATT
1 ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCT-GATT
*
79786403 TACAAAATTA
65 TACATAATTA
79786413 CTAAAATACC
Statistics
Matches: 292, Mismatches: 17, Indels: 14
0.90 0.05 0.04
Matches are distributed among these distances:
80 88 0.30
81 201 0.69
82 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (81 bp):
ACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTT
ACATAATTATCGTTTT
Done.