Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 257 of 433
Found at i:80032037 original size:20 final size:20
Alignment explanation
Indices: 80032012--80032070 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
80032002 TAAATATGGT
80032012 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
80032032 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
80032052 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
80032071 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:80032148 original size:24 final size:24
Alignment explanation
Indices: 80032121--80032261 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
80032111 GAGGAAGTGA
80032121 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
80032145 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
80032169 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
80032192 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
80032214 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
80032238 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
80032262 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 4, Indels: 9
0.89 0.03 0.07
Matches are distributed among these distances:
21 9 0.08
22 12 0.11
23 11 0.10
24 65 0.60
25 11 0.10
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:80032223 original size:45 final size:47
Alignment explanation
Indices: 80032121--80032261 Score: 189
Period size: 45 Copynumber: 3.0 Consensus size: 47
80032111 GAGGAAGTGA
80032121 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
80032169 AAAAGGGCTTATGCCCCAGTTAT-AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
80032214 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
80032262 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
45 29 0.35
46 13 0.15
47 7 0.08
48 27 0.32
49 8 0.10
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:80032234 original size:69 final size:71
Alignment explanation
Indices: 80032122--80032262 Score: 207
Period size: 69 Copynumber: 2.0 Consensus size: 71
80032112 AGGAAGTGAA
*
80032122 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-C
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCTC
80032185 CAGTTAT
65 CAGTTAT
** * *
80032192 AAAGGGCTTATG-CCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCC
80032256 AGTTAT
66 AGTTAT
80032262 A
1 A
80032263 TGATAAAGCA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
69 40 0.62
70 24 0.38
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (71 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCC
AGTTAT
Found at i:80032488 original size:31 final size:31
Alignment explanation
Indices: 80032453--80032547 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
80032443 CGTTTACAGT
80032453 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
80032484 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
80032515 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
80032546 AA
1 AA
80032548 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:80035913 original size:15 final size:14
Alignment explanation
Indices: 80035889--80035919 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
80035879 CCCTAACGTA
80035889 TTTTTGGTAAGATT
1 TTTTTGGTAAGATT
80035903 TTTTCTGGTAAGATT
1 TTTT-TGGTAAGATT
80035918 TT
1 TT
80035920 CAGGGACGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.19, C:0.03, G:0.19, T:0.58
Consensus pattern (14 bp):
TTTTTGGTAAGATT
Found at i:80037663 original size:46 final size:46
Alignment explanation
Indices: 80037613--80037788 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
80037603 TGGTTGAGCA
80037613 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80037659 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80037704 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80037752 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80037789 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80037769 original size:93 final size:93
Alignment explanation
Indices: 80037610--80037780 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80037600 GGATGGTTGA
* *
80037610 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80037675 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80037703 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80037768 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80037781 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80040772 original size:15 final size:15
Alignment explanation
Indices: 80040733--80040811 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
80040723 GTATCTTGGG
*
80040733 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
80040748 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
80040763 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
80040777 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
80040792 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
80040806 TTTCTT
1 TTTCTT
80040812 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:80040796 original size:29 final size:29
Alignment explanation
Indices: 80040724--80040810 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
80040714 CATAGTATCG
* * * *
80040724 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
80040754 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
80040783 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
80040811 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:80043238 original size:46 final size:46
Alignment explanation
Indices: 80043188--80043363 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
80043178 TGGTTGAGCA
80043188 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80043234 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80043279 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80043327 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80043364 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80043344 original size:93 final size:93
Alignment explanation
Indices: 80043185--80043355 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80043175 GGATGGTTGA
* *
80043185 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80043250 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80043278 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80043343 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80043356 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80055865 original size:12 final size:12
Alignment explanation
Indices: 80055850--80055874 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80055840 TCTCTACCCG
80055850 TGTGCCCAATTC
1 TGTGCCCAATTC
80055862 TGTGCCCAATTC
1 TGTGCCCAATTC
80055874 T
1 T
80055875 AAACATTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (12 bp):
TGTGCCCAATTC
Found at i:80057185 original size:96 final size:94
Alignment explanation
Indices: 80057016--80057329 Score: 324
Period size: 96 Copynumber: 3.3 Consensus size: 94
80057006 ATGTTGGGGT
* * * * * *** *
80057016 ATATGTGAGCCAGTGTAAGACCATGTTCGGAACATGACATCCACTTTGTTATGAGAGCTAGTGTA
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCAATATGTGAGCTAGTGTA
80057081 AGACCATGTCAAGGATATGGCATCGGC-CTC
66 AGACCATGTC--GGATATGGCATCGGCACTC
*
80057111 AATATGTGAGCTAGTGTAAGACCATTTTTGGAACATGGCATCGACCTCAATATGTGAGCTAGTGT
1 -ATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCAATATGTGAGCTAGTGT
* * *
80057176 AAGAGCATGTTCGGAACATGGCATCGGCATTC
65 AAGACCATG-TCGG-ATATGGCATCGGCACTC
* * * * *
80057208 ATATGAGAGCTGGTGTACGACCATGTTTGGGACATGGCATCGACCTCAATATGTGAGCCAGTGTA
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCAATATGTGAGCTAGTGTA
* * * *
80057273 AGACCATGTTTGGGTTATGGCATCGGCATTG
66 AGACCATG--TCGGATATGGCATCGGCACTC
* * * *
80057304 TTACGAGAGTTAGTGTAAGACCATGT
1 ATATGTGAGCTAGTGTAAGACCATGT
80057330 CTAGGACACG
Statistics
Matches: 185, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
95 2 0.01
96 175 0.95
97 8 0.04
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (94 bp):
ATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCAATATGTGAGCTAGTGTA
AGACCATGTCGGATATGGCATCGGCACTC
Found at i:80057297 original size:48 final size:48
Alignment explanation
Indices: 80057016--80057285 Score: 301
Period size: 48 Copynumber: 5.6 Consensus size: 48
80057006 ATGTTGGGGT
* * * * * **
80057016 ATATGTGAGCCAGTGTAAGACCATGTTCGGAACATGACATCCACTTTG
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCA
* * ** * *
80057064 TTATGAGAGCTAGTGTAAGACCATGTCAAGG-ATATGGCATCGGCCTCA
1 ATATGTGAGCTAGTGTAAGACCATGT-TTGGAACATGGCATCGACCTCA
*
80057112 ATATGTGAGCTAGTGTAAGACCATTTTTGGAACATGGCATCGACCTCA
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCA
* * * *
80057160 ATATGTGAGCTAGTGTAAGAGCATGTTCGGAACATGGCATCGGCATTC-
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGAC-CTCA
* * * *
80057208 ATATGAGAGCTGGTGTACGACCATGTTTGGGACATGGCATCGACCTCA
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCA
*
80057256 ATATGTGAGCCAGTGTAAGACCATGTTTGG
1 ATATGTGAGCTAGTGTAAGACCATGTTTGG
80057286 GTTATGGCAT
Statistics
Matches: 182, Mismatches: 36, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
47 4 0.02
48 174 0.96
49 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
ATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCA
Found at i:80057297 original size:144 final size:144
Alignment explanation
Indices: 80057016--80057285 Score: 387
Period size: 144 Copynumber: 1.9 Consensus size: 144
80057006 ATGTTGGGGT
* **
80057016 ATATGTGAGCCAGTGTAAGACCATGTTCGGAACATGACATCCACTTTGTTATGAGAGCTAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTTCGGAACATGACATCCACATTCATATGAGAGCTAGTGTA
* * * *
80057081 AGACCATGTCAAGGATATGGCATCGGCCTCAATATGTGAGCTAGTGTAAGACCATTTTTGGAACA
66 AGACCATGTCAAGGACATGGCATCGACCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACA
80057146 TGGCATCGACCTCA
131 TGGCATCGACCTCA
* * * ** *
80057160 ATATGTGAGCTAGTGTAAGAGCATGTTCGGAACATGGCATCGGCATTCATATGAGAGCTGGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTTCGGAACATGACATCCACATTCATATGAGAGCTAGTGTA
* ***
80057225 CGACCATGTTTGGGACATGGCATCGACCTCAATATGTGAGCCAGTGTAAGACCATGTTTGG
66 AGACCATGTCAAGGACATGGCATCGACCTCAATATGTGAGCCAGTGTAAGACCATGTTTGG
80057286 GTTATGGCAT
Statistics
Matches: 109, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
144 109 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (144 bp):
ATATGTGAGCCAGTGTAAGACCATGTTCGGAACATGACATCCACATTCATATGAGAGCTAGTGTA
AGACCATGTCAAGGACATGGCATCGACCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACA
TGGCATCGACCTCA
Found at i:80057318 original size:144 final size:144
Alignment explanation
Indices: 80057022--80057329 Score: 364
Period size: 144 Copynumber: 2.1 Consensus size: 144
80057012 GGGTATATGT
* * **
80057022 GAGCCAGTGTAAGACCATGTTCGGAACATGACATCCACTTTGTTATGAGAGCTAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTTCGGAACATGACATCCACATTCATATGAGAGCTAGTGTAAGACCA
* * * *
80057087 TGTCAAGGATATGGCATCGGCCTCAATATGTGAGCTAGTGTAAGACCATTTTTGGAACATGGCAT
66 TGTCAAGGACATGGCATCGACCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
* * *
80057152 CGACCTCAATATGT
131 CGACATCAATACGA
* * ** * *
80057166 GAGCTAGTGTAAGAGCATGTTCGGAACATGGCATCGGCATTCATATGAGAGCTGGTGTACGACCA
1 GAGCTAGTGTAAGACCATGTTCGGAACATGACATCCACATTCATATGAGAGCTAGTGTAAGACCA
*** ***
80057231 TGTTTGGGACATGGCATCGACCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGGTTATGGCAT
66 TGTCAAGGACATGGCATCGACCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
* ***
80057296 CGGCATTGTTACGA
131 CGACATCAATACGA
*
80057310 GAGTTAGTGTAAGACCATGT
1 GAGCTAGTGTAAGACCATGT
80057330 CTAGGACACG
Statistics
Matches: 135, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
144 135 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (144 bp):
GAGCTAGTGTAAGACCATGTTCGGAACATGACATCCACATTCATATGAGAGCTAGTGTAAGACCA
TGTCAAGGACATGGCATCGACCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
CGACATCAATACGA
Found at i:80060275 original size:23 final size:24
Alignment explanation
Indices: 80060249--80060296 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
80060239 AAGGTAAGGT
*
80060249 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
80060272 AAGGTAAGACAAGTTCATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
80060296 A
1 A
80060297 GAGCAAAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.46, C:0.10, G:0.23, T:0.21
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:80060393 original size:16 final size:16
Alignment explanation
Indices: 80060372--80060402 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80060362 ATAAATTTGA
80060372 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
80060388 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
80060403 ACTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:80064611 original size:39 final size:39
Alignment explanation
Indices: 80064477--80064614 Score: 145
Period size: 40 Copynumber: 3.5 Consensus size: 39
80064467 GGATATAACG
* * ** *
80064477 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATATCA
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTT-TATTA
* * *
80064517 ACTTGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAGCCC-GGTTTATTA
* *
80064557 ACTTGCAC-AAAGCCTTCGGGA-TTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGG-TTTATTA
80064595 ACTCGCACGAATGCCTTCGG
1 ACTCGCACGAATGCCTTCGG
80064615 ATCCTAGTCT
Statistics
Matches: 82, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
37 2 0.02
38 19 0.23
39 22 0.27
40 35 0.43
41 4 0.05
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTTATTA
Found at i:80064614 original size:78 final size:81
Alignment explanation
Indices: 80064484--80064667 Score: 216
Period size: 78 Copynumber: 2.3 Consensus size: 81
80064474 ACGACTCGCT
** * *
80064484 CAAATGCCTTCGGGACGAAGCCCGG-TTATATCAACTTGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATATCAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
80064547 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* ** *
80064564 CAAAGCCTTCGGGA-TTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCTGG
1 CAAAGCCTTCGGGACTTAGCCCGGATTATATCAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
80064627 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
80064643 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
80064668 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
77 3 0.03
78 43 0.48
79 29 0.33
80 14 0.16
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTATATCAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:80070616 original size:55 final size:52
Alignment explanation
Indices: 80070529--80070783 Score: 204
Period size: 55 Copynumber: 4.8 Consensus size: 52
80070519 ATTAGGGTTT
* *
80070529 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAATGA
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCT-AT-A
* * * * *
80070584 AAGGAAATCATGTAAGACAATGTCAAGACATGGC-ATTGATAAGTTACTAT-
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTATA
* *
80070634 AAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTC-ATAA
1 AAGG-AAA----CCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAT-A
* *
80070689 GGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-A-A
1 ---AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTATA
* * * *
80070741 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
80070784 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 21, Indels: 30
0.77 0.10 0.14
Matches are distributed among these distances:
49 40 0.24
50 4 0.02
51 3 0.02
52 3 0.02
53 38 0.23
54 14 0.08
55 59 0.35
57 2 0.01
58 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (52 bp):
AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTATA
Found at i:80070735 original size:108 final size:110
Alignment explanation
Indices: 80070536--80070736 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
80070526 TTTAAGGATA
* *
80070536 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAATGAAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAAGGAAACCATGTAAGA
*
80070601 CAATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CAATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
80070646 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGAAAGGAAACCATGTAAG
* *
80070708 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACAATGTCAAGACATGGCAATGATAAGTT
80070737 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.55
109 7 0.09
110 27 0.33
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAAGGAAACCATGTAAGA
CAATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:80070878 original size:23 final size:24
Alignment explanation
Indices: 80070852--80070896 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
80070842 AAGGTAGGGT
*
80070852 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
80070875 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
80070897 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:80070996 original size:16 final size:16
Alignment explanation
Indices: 80070975--80071005 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80070965 ATAAATTTGA
80070975 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
80070991 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
80071006 ACTAAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:80077769 original size:626 final size:627
Alignment explanation
Indices: 80076683--80077918 Score: 2030
Period size: 626 Copynumber: 2.0 Consensus size: 627
80076673 CAGAGGAAGT
* *
80076683 GTACTGTACTGGAAGCTTTGCTACAACTACTGTTTAGTGCCGCAACCGGTACTACTTGGAGTGTA
1 GTACTGTACTGGAAGCTCTGCTACAACTACTGTTTAGTACCGCAACCGGTACTACTTGGAGTGTA
* * *
80076748 GGGATGGGTGGGTTGATTATATCACCACATAGAGTGTAGGGTTGGACAGGGATGGAGTGTAAAGG
66 AGGATGGGTGGGTTGATTATATCACCACATAGAGTGTAGGGTTGGACAGAGATGGAGTGCAAAGG
* * * * *
80076813 CTGGTTGTGTAGGATTTCTTAATTGCATATTTGTATTGTTACTGTCATTGAGATGGGCTCAAGCC
131 CTAGTTGGGTAGGATTTCTTAATTGCATATCTGTACTGTTACTGTCAATGAGATGGGCTCAAGCC
* * * *
80076878 CAAATTGATACTAATACTGTAATGGGCTAAGTCCCTACTAAAACTGAAACATTACTGAAATGGGC
196 CAAACTAATACTAATACTGTAATGGGCTAAGTCCCTACTAAAACTAAAACATTACTAAAATGGGC
*
80076943 TTAGGGCCTAGACTGTATTTGCTCACTGTATGGTTGTTTGATATGGGATTACACACTGAGTTTTC
261 TTAGGGCCTAGACTGTATTTGCTCACTGTATGGTTGTTTGATATCGGATTACACACTGAGTTTTC
* * *
80077008 GTAAACTCACCCTTCTATTTATTTGCGCAGGTAATCCCCAGACTTAGGTTGATCGGTGCAGCGTG
326 GTAAACTCACCCTTCTATTTATTTGCGCAGGTAATCCCCAGAATTAGGTGGATCGGTGCAGCATG
* * * *
80077073 GGACTCAGAGGTGGCTACACAGCTGCTATCATTTTCGCATTTGATTTTGATTATAAGTATTATTA
391 GGACTCAGAGGTGACCACACAACTACTATCATTTTCGCATTTGATTTTGATTATAAGTATTATTA
80077138 GTTGGGGTATTTTTATTGTAATAAGGCCTCTTTGGA-TTTT-TTTTTAATTTGGGATTTTTATTT
456 GTTGGGGTATTTTTATTGTAATAAGGCCTCTTTGGATTTTTGTTTTTAATTTGGGATTTTTATTT
** *
80077201 GTTTTGATTTATAACTGCTAGCAGTAAGAAAAGACGCA-GGTTTTCAAATAGATAAATGTTTTTC
521 GTTTTGATTTATAACAACTAGCAGTAAGAAAAGACG-AGGGTTTTCAAAGAGATAAATGTTTTTC
80077265 AAAGATACCACGAATACGCAACCTATTTTAAGAGCTTCCACGA
585 AAAGATACCACGAATACGCAACCTATTTTAAGAGCTTCCACGA
* * *
80077308 GTACTGTACTGGCAGCTCTGCTGCAACTACTGTTTAGTACCGCAATCGGTACTACTTGGAGTGTA
1 GTACTGTACTGGAAGCTCTGCTACAACTACTGTTTAGTACCGCAACCGGTACTACTTGGAGTGTA
* * * *
80077373 AGGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTGGATAGAGATGGAGTGCAGAGG
66 AGGATGGGTGGGTTGATTATATCACCACATAGAGTGTAGGGTTGGACAGAGATGGAGTGCAAAGG
*
80077438 CTAGTTGGGTAGGATTTCTTGATTGCATATCTGTACTGTTACTGTCAATGAGATGGGCTCAAGCC
131 CTAGTTGGGTAGGATTTCTTAATTGCATATCTGTACTGTTACTGTCAATGAGATGGGCTCAAGCC
* * *
80077503 CAAACTAATACTAATATTGTAATGGGCTAACG-CTCTAACTGAAACTAAAACATTACTAAAATGG
196 CAAACTAATACTAATACTGTAATGGGCTAA-GTCCCT-ACTAAAACTAAAACATTACTAAAATGG
80077567 GCTTAGGGCCTAGACTGTATTTGCTCACTGTATGGTTGTTTGATATCGGATTACACACTGAGTTT
259 GCTTAGGGCCTAGACTGTATTTGCTCACTGTATGGTTGTTTGATATCGGATTACACACTGAGTTT
* * **
80077632 TCGTAAACTCACCCTTCTGTTTATTTGCGTAGGTAATCCCTTGAATTAGGTGGATCGGTGCAGCA
324 TCGTAAACTCACCCTTCTATTTATTTGCGCAGGTAATCCCCAGAATTAGGTGGATCGGTGCAGCA
* * *
80077697 TGGGACTCATAGGTGACCACACAACTACTATTATTTTTGCATTTGATTTTGATTATAAGTATTAT
389 TGGGACTCAGAGGTGACCACACAACTACTATCATTTTCGCATTTGATTTTGATTATAAGTATTAT
80077762 TAGTTGGGGTATTTTTATTGTAATAAGGCCTCTTTGGATTTTTGTTTTTAATTTGGGATTTTTAT
454 TAGTTGGGGTATTTTTATTGTAATAAGGCCTCTTTGGATTTTTGTTTTTAATTTGGGATTTTTAT
80077827 TTGTTTTGATTTATAACAACTAGCAGTAAGAAAAGACGAGGGTTTTCAAAGAGATAAATGTTTTT
519 TTGTTTTGATTTATAACAACTAGCAGTAAGAAAAGACGAGGGTTTTCAAAGAGATAAATGTTTTT
80077892 CAAAGATACCACGAATACGCAACCTAT
584 CAAAGATACCACGAATACGCAACCTAT
80077919 AGTAAAAGCT
Statistics
Matches: 563, Mismatches: 43, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
625 207 0.37
626 243 0.43
627 5 0.01
628 108 0.19
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (627 bp):
GTACTGTACTGGAAGCTCTGCTACAACTACTGTTTAGTACCGCAACCGGTACTACTTGGAGTGTA
AGGATGGGTGGGTTGATTATATCACCACATAGAGTGTAGGGTTGGACAGAGATGGAGTGCAAAGG
CTAGTTGGGTAGGATTTCTTAATTGCATATCTGTACTGTTACTGTCAATGAGATGGGCTCAAGCC
CAAACTAATACTAATACTGTAATGGGCTAAGTCCCTACTAAAACTAAAACATTACTAAAATGGGC
TTAGGGCCTAGACTGTATTTGCTCACTGTATGGTTGTTTGATATCGGATTACACACTGAGTTTTC
GTAAACTCACCCTTCTATTTATTTGCGCAGGTAATCCCCAGAATTAGGTGGATCGGTGCAGCATG
GGACTCAGAGGTGACCACACAACTACTATCATTTTCGCATTTGATTTTGATTATAAGTATTATTA
GTTGGGGTATTTTTATTGTAATAAGGCCTCTTTGGATTTTTGTTTTTAATTTGGGATTTTTATTT
GTTTTGATTTATAACAACTAGCAGTAAGAAAAGACGAGGGTTTTCAAAGAGATAAATGTTTTTCA
AAGATACCACGAATACGCAACCTATTTTAAGAGCTTCCACGA
Found at i:80081063 original size:48 final size:47
Alignment explanation
Indices: 80080945--80081110 Score: 228
Period size: 48 Copynumber: 3.5 Consensus size: 47
80080935 AATGTGCCTA
* * *
80080945 TGTAACACCATGTCTGGGACATGGCATCAGCGATGATA-GATGTGCCC
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG-TGTGCCG
80080992 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCC-G
* *
80081040 TGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATGT-TGATTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTG--CCG
*
80081088 TGTAAGACCATGTCGGGGACATG
1 TGTAAGACCATGTCTGGGACATG
80081111 ACATTGGTAC
Statistics
Matches: 108, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
47 44 0.41
48 63 0.58
49 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCG
Found at i:80083596 original size:40 final size:40
Alignment explanation
Indices: 80083551--80083742 Score: 264
Period size: 40 Copynumber: 4.8 Consensus size: 40
80083541 GGATACAGCT
*
80083551 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATT-GAGTA
*
80083591 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATT-GAGTA
* * *
80083631 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTGAGTA
* *
80083671 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTGAGTA
* *
80083711 ACTCACACAAATGCCTTCGGGAC-TTGCCCGGA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGA
80083743 ACTAGTCACT
Statistics
Matches: 144, Mismatches: 7, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
39 8 0.06
40 134 0.93
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTGAGTA
Found at i:80083764 original size:39 final size:40
Alignment explanation
Indices: 80083558--80083780 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
80083548 GCTACTCGCT
* * * *
80083558 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* * *
80083598 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* *
80083638 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
80083678 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACT-AGCA
** * *
80083718 CAAATGCCTTCGGGACTT-GCCCGGAACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
** *
80083757 CGGATGCCTTCGGGGCTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
80083781 ATCGTCATCC
Statistics
Matches: 166, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 30 0.18
40 133 0.80
41 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:80084491 original size:2 final size:2
Alignment explanation
Indices: 80084484--80084509 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80084474 ATGTGCAAAC
80084484 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
80084510 GTGCAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80086182 original size:40 final size:40
Alignment explanation
Indices: 80086124--80086283 Score: 171
Period size: 39 Copynumber: 4.0 Consensus size: 40
80086114 CGTTCAAACA
* * ***
80086124 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
80086164 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * * * *
80086204 CCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACCATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* *
80086243 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
80086282 CC
1 CC
80086284 CGGATATCAC
Statistics
Matches: 105, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 65 0.62
40 40 0.38
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:80086235 original size:39 final size:39
Alignment explanation
Indices: 80086154--80086283 Score: 206
Period size: 39 Copynumber: 3.3 Consensus size: 39
80086144 TATGGTAACC
* *
80086154 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
80086194 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
80086233 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
80086272 CGCACAATTGCC
1 CGCACAATTGCC
80086284 CGGATATCAC
Statistics
Matches: 82, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 65 0.79
40 17 0.21
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:80086291 original size:26 final size:26
Alignment explanation
Indices: 80086255--80086309 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
80086245 TTCGGGCTTA
80086255 GCCCGGATATCACAACTCGCACAATT
1 GCCCGGATATCACAACTCGCACAATT
80086281 GCCCGGATATCACAACTCGCACAATT
1 GCCCGGATATCACAACTCGCACAATT
80086307 GCC
1 GCC
80086310 TTCGGGCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.36, G:0.16, T:0.18
Consensus pattern (26 bp):
GCCCGGATATCACAACTCGCACAATT
Found at i:80086320 original size:65 final size:65
Alignment explanation
Indices: 80086216--80086348 Score: 212
Period size: 65 Copynumber: 2.0 Consensus size: 65
80086206 TTCGGGCTTA
* * *
80086216 GCCCGGATATCATAGCTCGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
1 GCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
* * *
80086281 GCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATT
1 GCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
80086346 GCC
1 GCC
80086349 TTCGGGCTTA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.23, C:0.35, G:0.20, T:0.23
Consensus pattern (65 bp):
GCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
Found at i:80086324 original size:39 final size:39
Alignment explanation
Indices: 80086281--80086420 Score: 244
Period size: 39 Copynumber: 3.6 Consensus size: 39
80086271 TCGCACAATT
80086281 GCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTA
1 GCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTA
* * *
80086320 GCCCGGATATCATAGCTCGCACCATTGCCTTCGGGCTTA
1 GCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTA
80086359 GCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTA
1 GCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTA
*
80086398 GCCCGGATATCACAATTCGCACA
1 GCCCGGATATCACAACTCGCACA
80086421 TTCATACACA
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.23, C:0.34, G:0.21, T:0.23
Consensus pattern (39 bp):
GCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTA
Found at i:80086358 original size:104 final size:104
Alignment explanation
Indices: 80086178--80086387 Score: 420
Period size: 104 Copynumber: 2.0 Consensus size: 104
80086168 CGGGACTTAA
80086178 CCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATTG
1 CCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATTG
80086243 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
66 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
80086282 CCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATTG
1 CCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATTG
80086347 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
66 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
80086386 CC
1 CC
80086388 TTCGGGCTTA
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 106 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (104 bp):
CCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATTG
CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
Found at i:80086396 original size:143 final size:144
Alignment explanation
Indices: 80086154--80086420 Score: 446
Period size: 143 Copynumber: 1.9 Consensus size: 144
80086144 TATGGTAACC
80086154 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
* * *
80086219 CGGATATCATAGCTCGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCC
66 CGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCC
80086284 CGGATATCACAACT
131 CGGATATCACAACT
* * * * *
80086298 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACCATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
*
80086362 CGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
66 CGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
80086421 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
143 97 0.85
144 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (144 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCC
CGGATATCACAACT
Found at i:80103740 original size:29 final size:28
Alignment explanation
Indices: 80103638--80103741 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 28
80103628 GTGACGAGAT
*
80103638 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
*
80103667 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
80103696 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
80103725 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
80103742 AATCGATTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:80103775 original size:57 final size:57
Alignment explanation
Indices: 80103640--80103775 Score: 159
Period size: 58 Copynumber: 2.4 Consensus size: 57
80103630 GACGAGATTG
* * * *
80103640 GCACTAAGTGTGCAAGCTTGAAATATATGGCACTAAGTGTGCGAACTTAAATTATATG
1 GCACTATGTGTGCAAGCTT-AAATACATGGCACTAAGTGTGCGAACATAAATTATATA
* **
80103698 GCACTATGTGTGCGAGCTTAAATCACATGGCACTAAGTGTGCGAA-ATCGATTAT-TAA
1 GCACTATGTGTGCAAGCTTAAAT-ACATGGCACTAAGTGTGCGAACATAAATTATAT-A
*
80103755 GCACTATGTGTGCAAACTTAA
1 GCACTATGTGTGCAAGCTTAA
80103776 TGTATATATC
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
56 1 0.01
57 29 0.43
58 37 0.55
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (57 bp):
GCACTATGTGTGCAAGCTTAAATACATGGCACTAAGTGTGCGAACATAAATTATATA
Found at i:80107801 original size:41 final size:43
Alignment explanation
Indices: 80107723--80107823 Score: 109
Period size: 41 Copynumber: 2.4 Consensus size: 43
80107713 TCTCAGACGT
* * * **
80107723 GGTCTTACTTGTAATCATATATCGATGCCACTTTCCCAGGCAG
1 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAG
*
80107766 GGTCTTACATG-AATCAAATAT-GATGCCGAC-GTCCCAAACAT
1 GGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAAACAG
*
80107807 GGTCTTACAAGTAATCA
1 GGTCTTACATGTAATCA
80107824 CATACATCGG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
41 23 0.47
42 16 0.33
43 10 0.20
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAG
Found at i:80116529 original size:19 final size:18
Alignment explanation
Indices: 80116504--80116551 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
80116494 AAAGAAATGA
*
80116504 AAAAAAAAAAGAGAATATG
1 AAAAAAAAAAGAGAA-AAG
*
80116523 AAGAAAAACAA-AGAAAAG
1 AA-AAAAAAAAGAGAAAAG
80116541 AAAAAAAAAAG
1 AAAAAAAAAAG
80116552 TGTTCATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
17 7 0.29
18 4 0.17
19 6 0.25
20 7 0.29
ACGTcount: A:0.79, C:0.02, G:0.15, T:0.04
Consensus pattern (18 bp):
AAAAAAAAAAGAGAAAAG
Found at i:80117806 original size:29 final size:29
Alignment explanation
Indices: 80117705--80117787 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
80117695 GTGACGAGAT
80117705 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
80117734 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
80117763 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
80117788 AGTACGGCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:80117823 original size:58 final size:58
Alignment explanation
Indices: 80117701--80117836 Score: 161
Period size: 58 Copynumber: 2.4 Consensus size: 58
80117691 TACGGTGACG
* *
80117701 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
80117758 ATATATGGCACTAAGTGTGCATGCTGGAAA-AGTACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATA-TACGGCACTAAGTGTGC-ATGCTCGAA
* * *
80117816 GGGTATGGCACTATGTGTGCA
1 AGATATGGCACTAAGTGTGCA
80117837 GGCTTAAAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
57 4 0.06
58 62 0.93
59 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:80117833 original size:29 final size:29
Alignment explanation
Indices: 80117705--80117836 Score: 135
Period size: 29 Copynumber: 4.6 Consensus size: 29
80117695 GTGACGAGAT
*
80117705 TGGCACTAAGTGTGCATGCTGGAAATA-TA
1 TGGCACTAAGTGTGCATGCTCGAAA-AGTA
*
80117734 TGGCACTAAGTGTGCATGCTGGAAATA-TA
1 TGGCACTAAGTGTGCATGCTCGAAA-AGTA
*
80117763 TGGCACTAAGTGTGCATGCTGGAAAAGTA
1 TGGCACTAAGTGTGCATGCTCGAAAAGTA
* ** **
80117792 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTCGAAAAGTA
*
80117821 TGGCACTATGTGTGCA
1 TGGCACTAAGTGTGCA
80117837 GGCTTAAAAC
Statistics
Matches: 92, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
28 2 0.02
29 89 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTCGAAAAGTA
Found at i:80125594 original size:79 final size:80
Alignment explanation
Indices: 80125415--80125605 Score: 226
Period size: 79 Copynumber: 2.4 Consensus size: 80
80125405 GCAAATTGTG
* * *
80125415 ATATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATGATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGG-CATTTGTGCAAATAATGATATCCGGGCTAAGACCCGAAGGC
*
80125479 ATTCGTGCAAGTTGAT
65 AATCGTGCAAGTTGAT
* * * **
80125495 AAATTCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAATAATGATATCCGGGCTAAGACCCGAAGGCA
* *
80125559 ATGGTGCGAGTTGCA-
66 ATCGTGCAAGTTG-AT
* *
80125574 ATATCCGGGATAAGTCCCGAAGGCCTTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
80125606 GGGCTACCAT
Statistics
Matches: 93, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 47 0.51
80 43 0.46
81 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAATAATGATATCCGGGCTAAGACCCGAAGGCA
ATCGTGCAAGTTGAT
Found at i:80125606 original size:40 final size:40
Alignment explanation
Indices: 80125415--80125605 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
80125405 GCAAATTGTG
* * *
80125415 ATATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATG--
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGT--TGCA
*
80125455 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG-A
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCA
* * * **
80125494 TAAATTCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTG
1 -ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCA
* * *
80125535 ATATCCGGGCTAAG-CCCGAAGGCAATGGTGCGAGTTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCA
* * *
80125574 ATATCCGGGATAAGTCCCGAAGGCCTTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
80125606 GGGCTACCAT
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 88 0.70
41 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCA
Found at i:80132047 original size:24 final size:24
Alignment explanation
Indices: 80132002--80132048 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
80131992 TATACATTAA
* *
80132002 CAAAGTATCATTCAATTTCCAAGC
1 CAAAATATCATTCAATTACCAAGC
80132026 CAAAATATCATT-ATATTACCAAG
1 CAAAATATCATTCA-ATTACCAAG
80132049 TACATTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (24 bp):
CAAAATATCATTCAATTACCAAGC
Found at i:80132391 original size:43 final size:43
Alignment explanation
Indices: 80132344--80132459 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 43
80132334 AATGCCAACA
* *
80132344 TCCCAGACATGGTCTTACATGTAATCACATATTGATGCC-ACTG
1 TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCGA-TG
* *
80132387 TCCCAGACAGGGTCTTACACG-AATCAAATA-CGATGCCGATG
1 TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCGATG
80132428 TCCCAGACATGGTCTTACACGTAATCACATAT
1 TCCCAGACATGGTCTTACACGTAATCACATAT
80132460 ATCAATGCCA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
41 28 0.44
42 17 0.27
43 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCGATG
Found at i:80132434 original size:41 final size:43
Alignment explanation
Indices: 80132344--80132489 Score: 165
Period size: 41 Copynumber: 3.4 Consensus size: 43
80132334 AATGCCAACA
* * *
80132344 TCCCAGACATGGTCTTACATGTAATCACATATTGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTG
*
80132387 TCCCAGACAGGGTCTTACACG-AATCAAATA-CGATGCCGA-TG
1 TCCCAGACATGGTCTTACACGTAATCAAATATCGATGCC-ACTG
*
80132428 TCCCAGACATGGTCTTACACGTAATCACATATATCAATGCCAAC-G
1 TCCCAGACATGGTCTTACACGTAATCA-A-ATATCGATGCC-ACTG
* *
80132473 CCCCAGACGTGGTCTTA
1 TCCCAGACATGGTCTTA
80132490 AACGAGAACA
Statistics
Matches: 88, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
41 28 0.32
42 14 0.16
43 20 0.23
44 3 0.03
45 23 0.26
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTG
Found at i:80133201 original size:26 final size:25
Alignment explanation
Indices: 80133153--80133201 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
80133143 AAAGCTCAAG
* *
80133153 TATTCATCAATTAAATAACTCAAAA
1 TATTCATCAAATAAAAAACTCAAAA
*
80133178 TATTCATCAAAATAAAAAATTCAA
1 TATTCATC-AAATAAAAAACTCAA
80133202 GCATGGACTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (25 bp):
TATTCATCAAATAAAAAACTCAAAA
Found at i:80141278 original size:40 final size:40
Alignment explanation
Indices: 80141230--80141412 Score: 285
Period size: 40 Copynumber: 4.6 Consensus size: 40
80141220 CTACTCGCTT
*** *
80141230 AAATGCCTTCGGGACTTAGCCCGGTTTTAGTAGCTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
* *
80141270 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGGAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
*
80141310 AAATGCCTTCGGGACTTAGCCTGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
**
80141350 AAATGCCTTCGGGACTTAGCCCAAAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
80141390 AAATGCCTTCGGGACTTAGCCCG
1 AAATGCCTTCGGGACTTAGCCCG
80141413 ATTATCATCC
Statistics
Matches: 132, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
Found at i:80143989 original size:29 final size:30
Alignment explanation
Indices: 80143895--80144084 Score: 264
Period size: 30 Copynumber: 6.5 Consensus size: 30
80143885 GACAAGATTG
* * * * *
80143895 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
80143925 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
80143953 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
80143982 GCACTAAGTGTGCGAGCTGAAAATTACATG
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
80144012 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
80144042 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
80144071 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80144085 GATTCATTAT
Statistics
Matches: 146, Mismatches: 9, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.01
28 22 0.15
29 49 0.34
30 71 0.49
31 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:80144074 original size:89 final size:87
Alignment explanation
Indices: 80143895--80144084 Score: 278
Period size: 89 Copynumber: 2.2 Consensus size: 87
80143885 GACAAGATTG
* * * *
80143895 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAA
1 GCACTAAGTGTGCGAGCTGAAAATTGTACAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAA
80143960 GTGTGCGAGCTGAAAATATATA
66 GTGTGCGAGCTGAAAATATATA
80143982 GCACTAAGTGTGCGAGCTGAAAA-T-TACATGGCACTAAGTGTGCGAG-CTGAAAATTATATAGC
1 GCACTAAGTGTGCGAGCTGAAAATTGTACA--GCACTAAGTGTGCGAGTCTG---ATTATATAGC
80144044 ACTAAGTGTGCGAGCTGAAAATATATA
61 ACTAAGTGTGCGAGCTGAAAATATATA
80144071 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80144085 GATTCATTAT
Statistics
Matches: 94, Mismatches: 4, Indels: 8
0.89 0.04 0.08
Matches are distributed among these distances:
85 4 0.04
86 3 0.03
87 36 0.38
89 51 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (87 bp):
GCACTAAGTGTGCGAGCTGAAAATTGTACAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAA
GTGTGCGAGCTGAAAATATATA
Found at i:80151928 original size:29 final size:30
Alignment explanation
Indices: 80151835--80152024 Score: 255
Period size: 30 Copynumber: 6.5 Consensus size: 30
80151825 GACAAGATTG
* * * * *
80151835 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
80151865 GCACTAAGTGTGTGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
80151893 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
80151922 GCACTAAGTGTGCGAGCTGAAAATTACATG
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
80151952 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
80151982 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
80152011 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80152025 GATTCATTAT
Statistics
Matches: 144, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.01
28 21 0.15
29 49 0.34
30 70 0.49
31 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:80153895 original size:11 final size:11
Alignment explanation
Indices: 80153879--80153903 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80153869 CATGAGAGCT
80153879 TTTTTTTTTTC
1 TTTTTTTTTTC
80153890 TTTTTTTTTTC
1 TTTTTTTTTTC
80153901 TTT
1 TTT
80153904 CCTTTTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:80153898 original size:15 final size:15
Alignment explanation
Indices: 80153878--80153915 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
80153868 ACATGAGAGC
*
80153878 TTTTTTTT-TTTCTT
1 TTTTTTTTCTTTCCT
80153892 TTTTTTTTCTTTCCT
1 TTTTTTTTCTTTCCT
*
80153907 TTTCTTTTC
1 TTTTTTTTC
80153916 ATCATCATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTTCTTTCCT
Found at i:80157651 original size:44 final size:44
Alignment explanation
Indices: 80157586--80157672 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
80157576 TTGATATCTT
* *
80157586 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
* *
80157630 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGACGG
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGACGG
80157673 TTAAGGATAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 3 0.08
44 35 0.92
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:80157874 original size:47 final size:47
Alignment explanation
Indices: 80157809--80158085 Score: 195
Period size: 47 Copynumber: 5.6 Consensus size: 47
80157799 GCATTGGCAC
*
80157809 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *** *
80157856 TAAGATAAGGATATCATGTAAGACCATGCCAAGG--CATGGCA-TTGA
1 TAAGATAAGGATACCATGTAAGACCATG-TTTGGAACATGGCATTTGG
*
80157901 TAAGCTCTATAAGGGAAGGATACCATGGAAGACCATGTTTGGAACATGGCATTTGG
1 TAAG----AT-----AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *** *
80157957 TAAGATAAGGATATCATGTAAGACCATGCCAAGG--CATGGCATTAATAAGTTCTA
1 TAAGATAAGGATACCATGTAAGACCATG-TTTGGAACATGGCATT--T--G----G
** * *
80158011 TAAGGCAAGGATACCATGTAAGAGCATGTTTGGAACATGGCGTTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
80158058 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
80158086 CCAAGGAATG
Statistics
Matches: 175, Mismatches: 31, Indels: 48
0.69 0.12 0.19
Matches are distributed among these distances:
45 7 0.04
46 16 0.09
47 70 0.40
48 5 0.03
49 2 0.01
50 1 0.01
51 1 0.01
52 2 0.01
53 5 0.03
54 44 0.25
55 15 0.09
56 7 0.04
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.25
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:80157933 original size:54 final size:52
Alignment explanation
Indices: 80157862--80158161 Score: 191
Period size: 54 Copynumber: 5.8 Consensus size: 52
80157852 TTGGTAAGAT
*
80157862 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGCTCTATAAGGG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAG-TCTATAA-GG
* *** *
80157916 AAGGATACCATGGAAGACCATG-TTTGGAACATGGCATTTGGTAAG---AT----
1 AAGGATACCATGTAAGACCATGCCAAGG--CATGGCA-TTGATAAGTCTATAAGG
* *
80157963 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAG-TCTATAAGG
* *** * *
80158016 CAAGGATACCATGTAAGAGCATG-TTTGGAACATGGCGTTTGGTAAG---AT----
1 -AAGGATACCATGTAAGACCATGCCAAGG--CATGGC-ATTGATAAGTCTATAAGG
* *
80158064 AAGGATATCATGTAAGACCATGCCAAGGAATGGCATTGATAAGTTCTATAAGG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAG-TCTATAAGG
* * * * *
80158117 CAAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGT
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGT
80158162 TCAAAAAGGA
Statistics
Matches: 184, Mismatches: 36, Indels: 53
0.67 0.13 0.19
Matches are distributed among these distances:
45 13 0.07
46 12 0.07
47 40 0.22
48 4 0.02
49 4 0.02
52 4 0.02
53 5 0.03
54 76 0.41
55 13 0.07
56 13 0.07
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.24
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTCTATAAGG
Found at i:80157942 original size:101 final size:101
Alignment explanation
Indices: 80157809--80158140 Score: 583
Period size: 101 Copynumber: 3.3 Consensus size: 101
80157799 GCATTGGCAC
*
80157809 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGGCAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
*
80157874 TAAGACCATGCCAAGGCATGGCATTGATAAGCTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
80157910 TAAGGGAAGGATACCATGGAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGGCAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
*
80157975 TAAGACCATGCCAAGGCATGGCATTAATAAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
80158011 TAAGGCAAGGATACCATGTAAGAGCATGTTTGGAACATGGCGTTTGGTAAGATAAGGATATCATG
1 TAAGGCAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
*
80158076 TAAGACCATGCCAAGGAATGGCATTGATAAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
*
80158112 TAAGGCAAGGATACCACGTAAGACCATGT
1 TAAGGCAAGGATACCATGTAAGACCATGT
80158141 CAAGACATGG
Statistics
Matches: 218, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 218 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (101 bp):
TAAGGCAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:80159778 original size:48 final size:48
Alignment explanation
Indices: 80159704--80159857 Score: 229
Period size: 48 Copynumber: 3.2 Consensus size: 48
80159694 TACAAAAACT
** *
80159704 ATGTCTGGGACATGAAATCGATGATGATATATGTGCCTATGTAAGACC
1 ATGTCTGGGACATGGCATCGACGATGATATATGTGCCTATGTAAGACC
*
80159752 ATGTCTGGGACATGGCATCAACGATGATATATGTGCCTATGTAAGACC
1 ATGTCTGGGACATGGCATCGACGATGATATATGTGCCTATGTAAGACC
* * *
80159800 ATGTTTGGGACATGGCATCGGCGATGATATGTGTGCC-AGTGTAAGACC
1 ATGTCTGGGACATGGCATCGACGATGATATATGTGCCTA-TGTAAGACC
80159848 ATGTCTGGGA
1 ATGTCTGGGA
80159858 TCGTTGACTT
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 1 0.01
48 95 0.99
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (48 bp):
ATGTCTGGGACATGGCATCGACGATGATATATGTGCCTATGTAAGACC
Found at i:80160345 original size:13 final size:13
Alignment explanation
Indices: 80160327--80160352 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80160317 AAGTCAAGGA
80160327 GACCCAATTAGGT
1 GACCCAATTAGGT
80160340 GACCCAATTAGGT
1 GACCCAATTAGGT
80160353 AAACTCGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
GACCCAATTAGGT
Found at i:80161740 original size:48 final size:48
Alignment explanation
Indices: 80161684--80162049 Score: 317
Period size: 48 Copynumber: 7.6 Consensus size: 48
80161674 TATGTATGCC
*
80161684 AGTGTAAGACCATGTTT-GGAGCATGGCATCGGCATTGTTATGAGAGCT
1 AGTGTAAGACCATGTTTGGGA-CATGGCATCGGCATTGATATGAGAGCT
* * * * * ** * *
80161732 AGTGTAAGACTATGTCTGGGACACGGCATTGGCCTCAATATGTGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCT
* * * * *
80161780 AGTGTAAGACCATCTTTGGAACATAGCATCGGTATTGTTATGAGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCT
* * * ** *
80161828 AGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCAATATGTA-AGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATG-AGAGCT
* * * * * *
80161876 AATGTAAGACCATGTTCGGAACATCGTATCGGCATTGATATGAGAGGT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCT
* * ** *
80161924 AGTGTAAGACCATGTCTT-GGACATGGCATCAGCCTCAATATGTA-AGCA
1 AGTGTAAGACCATGT-TTGGGACATGGCATCGGCATTGATATG-AGAGCT
* * * * * *
80161972 AGTCTAAGGCCATGTTTGGGACATGGCATCGACATTGTTACGAGAGTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCT
*
80162020 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTTTGGGACATGGCATC
80162050 AACATCTTAC
Statistics
Matches: 239, Mismatches: 72, Indels: 14
0.74 0.22 0.04
Matches are distributed among these distances:
47 4 0.02
48 229 0.96
49 6 0.03
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCT
Found at i:80161837 original size:96 final size:96
Alignment explanation
Indices: 80161673--80162049 Score: 529
Period size: 96 Copynumber: 3.9 Consensus size: 96
80161663 ACGTTGGGGT
* *
80161673 ATATGTATGCCAGTGTAAGACCATGTTTGGAGCATGGCATCGGCATTGTTATGAGAGCTAGTGTA
1 ATATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTA
* * *
80161738 AGACTATGTCTGGGACACGGCATTGGCCTCA
66 AGACCATGTCTGGGACATGGCATCGGCCTCA
* * * *
80161769 ATATGTGAGCCAGTGTAAGACCATCTTTGGAACATAGCATCGGTATTGTTATGAGAGCTAGTGTA
1 ATATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTA
*
80161834 AGACCATGTCTGGGATATGGCATCGGCCTCA
66 AGACCATGTCTGGGACATGGCATCGGCCTCA
* * * * * *
80161865 ATATGTAAGCCAATGTAAGACCATGTTCGGAACATCGTATCGGCATTGATATGAGAGGTAGTGTA
1 ATATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTA
* *
80161930 AGACCATGTCTTGGACATGGCATCAGCCTCA
66 AGACCATGTCTGGGACATGGCATCGGCCTCA
* * * * * * *
80161961 ATATGTAAGCAAGTCTAAGGCCATGTTTGGGACATGGCATCGACATTGTTACGAGAGTTAGTGTA
1 ATATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTA
80162026 AGACCATGTCTGGGACATGGCATC
66 AGACCATGTCTGGGACATGGCATC
80162050 AACATCTTAC
Statistics
Matches: 246, Mismatches: 35, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 246 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (96 bp):
ATATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTA
AGACCATGTCTGGGACATGGCATCGGCCTCA
Found at i:80164269 original size:48 final size:48
Alignment explanation
Indices: 80164198--80164331 Score: 180
Period size: 48 Copynumber: 2.8 Consensus size: 48
80164188 CACCACAATT
* ***
80164198 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGTGTTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA
*
80164246 TATGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCGACATTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA
* * * *
80164294 TATGTGTGCCAG-GTAAGACCATATCTGGGATATGGCAT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
80164332 TAGCCATGGC
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
47 23 0.30
48 53 0.70
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA
Found at i:80164405 original size:42 final size:45
Alignment explanation
Indices: 80164306--80164413 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 45
80164296 TGTGTGCCAG
*
80164306 GTAAGACCATATCTGGGATATGGCATTAGCCATGGCATGTGATTTCAT
1 GTAAGACCATATCTGGGATATGGCATTAG-CAT-G-ATGAGATTTCAT
* *
80164354 GTAAGACCATATCTGGGATATGGCGTT-G-AT-ATGAGATTTCGT
1 GTAAGACCATATCTGGGATATGGCATTAGCATGATGAGATTTCAT
*
80164396 GTAAGACCATGTCTGGGA
1 GTAAGACCATATCTGGGA
80164414 CATAGCATCG
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 27 0.48
45 2 0.04
47 1 0.02
48 26 0.46
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (45 bp):
GTAAGACCATATCTGGGATATGGCATTAGCATGATGAGATTTCAT
Found at i:80164427 original size:42 final size:41
Alignment explanation
Indices: 80164346--80164463 Score: 137
Period size: 42 Copynumber: 2.8 Consensus size: 41
80164336 CATGGCATGT
* * * *
80164346 GATTTCATGTAAGACCATATCTGGGATATGGCGTTGATATGA
1 GATTTC-TGTAAGACCATGTCTGGGACATGGCATCGATATGA
*
80164388 GATTTCGTGTAAGACCATGTCTGGGACATAGCATCGATATGA
1 GATTTC-TGTAAGACCATGTCTGGGACATGGCATCGATATGA
* * *
80164430 GGTCCTCTGTAAGACTATGTCTGGGACATGGCAT
1 GAT-TTCTGTAAGACCATGTCTGGGACATGGCAT
80164464 TGGCACCGGC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 63 0.97
43 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (41 bp):
GATTTCTGTAAGACCATGTCTGGGACATGGCATCGATATGA
Found at i:80164522 original size:132 final size:131
Alignment explanation
Indices: 80164306--80164547 Score: 292
Period size: 132 Copynumber: 1.8 Consensus size: 131
80164296 TGTGTGCCAG
* * * *
80164306 GTAAGACCATATCTGGGATATGGCATTAGCCATGGCATGTGATTTCATGTAAGACCATATCTGGG
1 GTAAGACCATATCTGGGACATGGCATTAGCCACGGCATGAGATTTCATGTAAGACCATATCTCGG
* * * *
80164371 ATATGGCGTTGATATGAGATTTCGTGTAAGACCATGTCTG-GGACATAGCATCGATATGAGGTCC
66 ATATGGCATCGATATGAGA-TCCATGTAAGACCATGTC-GAGGACATAGCATCGATATGAGGTCC
80164435 TCT
129 TCT
* * * * * *
80164438 GTAAGACTATGTCTGGGACATGGCATT-GGCACCGGCATGAGATTTCGTGTATGACTATATCTCG
1 GTAAGACCATATCTGGGACATGGCATTAGCCA-CGGCATGAGATTTCATGTAAGACCATATCTCG
*
80164502 GA-ATGGCATCGGTATGGAGATCCATGTAAGACCATGTCGAGGACAT
65 GATATGGCATCGATAT-GAGATCCATGTAAGACCATGTCGAGGACAT
80164548 GGCTTTTGTA
Statistics
Matches: 92, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
130 1 0.01
131 35 0.38
132 56 0.61
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (131 bp):
GTAAGACCATATCTGGGACATGGCATTAGCCACGGCATGAGATTTCATGTAAGACCATATCTCGG
ATATGGCATCGATATGAGATCCATGTAAGACCATGTCGAGGACATAGCATCGATATGAGGTCCTC
T
Found at i:80164539 original size:89 final size:90
Alignment explanation
Indices: 80164384--80164550 Score: 214
Period size: 89 Copynumber: 1.9 Consensus size: 90
80164374 TGGCGTTGAT
* * * * *
80164384 ATGAGATTTCGTGTAAGACCATGTCTGGGACATAGCATCGATATGAGGTCCTCTGTAAGACTATG
1 ATGAGATTTCGTGTAAGACCATATCTCGGACATAGCATCGATATGAGATCCTATGTAAGACCATG
80164449 TCTG-GGACATGGCATTGGCACCGGC
66 TC-GAGGACATGGCATTGGCACCGGC
* * * *
80164474 ATGAGATTTCGTGTATGACTATATCTCGGA-ATGGCATCGGTATGGAGATCC-ATGTAAGACCAT
1 ATGAGATTTCGTGTAAGACCATATCTCGGACATAGCATCGATAT-GAGATCCTATGTAAGACCAT
80164537 GTCGAGGACATGGC
65 GTCGAGGACATGGC
80164551 TTTTGTATTT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
88 1 0.02
89 33 0.50
90 32 0.48
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (90 bp):
ATGAGATTTCGTGTAAGACCATATCTCGGACATAGCATCGATATGAGATCCTATGTAAGACCATG
TCGAGGACATGGCATTGGCACCGGC
Found at i:80168001 original size:24 final size:24
Alignment explanation
Indices: 80167970--80168019 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
80167960 GGGTTACCTC
80167970 TTATTAGGAAAGTAGAGTTCAGCA
1 TTATTAGGAAAGTAGAGTTCAGCA
*
80167994 TTATTAGGAAAGTAGAGTTCGGCA
1 TTATTAGGAAAGTAGAGTTCAGCA
80168018 TT
1 TT
80168020 GATTTGGCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (24 bp):
TTATTAGGAAAGTAGAGTTCAGCA
Found at i:80172162 original size:48 final size:48
Alignment explanation
Indices: 80172060--80172191 Score: 160
Period size: 48 Copynumber: 2.8 Consensus size: 48
80172050 ACGATTTATG
* * *
80172060 GAGCCAGTGTAAGA-CATTGTCTTGGACATGGCATCGACGTTTATATAA
1 GAGCCAGTGTAAGACCA-TGTCTGGGACATGGCATCGACATTGATATAA
**
80172108 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGATATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGATATAA
* * *
80172156 GTGCCAGTGTAAGACCATATCTGGGATATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
80172192 GCTGTAACAC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
47 1 0.01
48 70 0.96
49 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATAA
Found at i:80176356 original size:14 final size:15
Alignment explanation
Indices: 80176328--80176356 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80176318 CTCTTTCAAG
80176328 GACAAGAAGAATCCA
1 GACAAGAAGAATCCA
80176343 GACAAGAA-AATCCA
1 GACAAGAAGAATCCA
80176357 TATGAACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.17, T:0.07
Consensus pattern (15 bp):
GACAAGAAGAATCCA
Found at i:80177057 original size:15 final size:15
Alignment explanation
Indices: 80177039--80177082 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
80177029 GAAGCCCAGA
80177039 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
80177054 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
*
80177069 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
80177083 TTTACAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:80179761 original size:19 final size:19
Alignment explanation
Indices: 80179733--80179775 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
80179723 TTACCCTTAG
*
80179733 TAAGCCCATATGAAAATAA
1 TAAGCACATATGAAAATAA
80179752 TAAGCACATATGAAAATAA
1 TAAGCACATATGAAAATAA
80179771 TAAGC
1 TAAGC
80179776 TGTAACATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.21
Consensus pattern (19 bp):
TAAGCACATATGAAAATAA
Found at i:80186843 original size:40 final size:40
Alignment explanation
Indices: 80186799--80187029 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
80186789 GGCTAAGTCT
* *
80186799 CGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACC
1 CGAAGGCATTTGTGCGAGTTG-TTATATCCGGGTTAAGACC
*
80186839 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGTTAAGACC
* * *
80186879 CGAAGGCATTTGTGCAAGTTGCTATATTCGGGTTAAGACC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGTTAAGACC
*
80186919 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGTTAAGACC
* *
80186959 CGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGTTAAGACC
* ** *
80186999 CGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGG
80187030 CTAAATTCCG
Statistics
Matches: 170, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 168 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTGTTATATCCGGGTTAAGACC
Found at i:80186919 original size:80 final size:80
Alignment explanation
Indices: 80186786--80187033 Score: 365
Period size: 80 Copynumber: 3.1 Consensus size: 80
80186776 TGAATGATAC
* * * * *
80186786 CCGGGCTAAGTCTCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-CTATATCCGGGTTAAGACCCGAAGGCATTT
80186850 GTGCGAGTTGTTATAT
65 GTGCGAGTTGTTATAT
*
80186866 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATTCGGGTTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCCGGGTTAAGACCCGAAGGCATTTG
80186931 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
* * *
80186946 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCCGGGTTAAGACCCGAAGGCATTTG
** *
80187011 TGCTTGTGGTTATAT
66 TGCGAGTTGTTATAT
80187026 CC-GGCTAA
1 CCGGGCTAA
80187034 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
79 6 0.04
80 146 0.95
81 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCCGGGTTAAGACCCGAAGGCATTTG
TGCGAGTTGTTATAT
Found at i:80192712 original size:40 final size:39
Alignment explanation
Indices: 80192581--80192758 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 39
80192571 TACTCGTTCA
* * *
80192581 AATGCCTTCGGGACATAGCCCGG-TTATAGAAACTCGCAC
1 AATGCCTTCGGGACTTAGTCCGGATT-TAGTAACTCGCAC
*
80192620 AGATGCCTTCGGGACTTA-ACCTGGATTTAGTAACTCGCAC
1 A-ATGCCTTCGGGACTTAGTCC-GGATTTAGTAACTCGCAC
80192660 AAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCAC
1 -AATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCAC
* * *
80192700 GAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGTCCGGATTTAGTAAC-TCGCAC
*
80192741 AAAGCCTTCGGGACTTAG
1 AATGCCTTCGGGACTTAG
80192759 CCCGACATCA
Statistics
Matches: 122, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
39 6 0.05
40 103 0.84
41 13 0.11
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCAC
Found at i:80192758 original size:80 final size:80
Alignment explanation
Indices: 80192579--80192762 Score: 209
Period size: 80 Copynumber: 2.3 Consensus size: 80
80192569 GCTACTCGTT
*
80192579 CAAATGCCTTCGGGACATAGCCCGGTTATAGAAACTCGCACAGATGCCTTCGGGACTTAACCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGAAACTCGCACAGATGCCTTCGGGACTTAACCTGG
* *
80192644 ATTTAGTAACTCGCA
66 ATATAGTAACTAGCA
* * *
80192659 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCAC-GAATGCCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGAAACTCGCACAG-ATGCCTTCGGGA-CTTA-A
*
80192720 CC-GGATATAGTCACTTAGCA
61 CCTGGATATAGTAAC-TAGCA
80192740 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
80192763 ACATCATTCG
Statistics
Matches: 89, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
79 7 0.08
80 67 0.75
81 15 0.17
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGAAACTCGCACAGATGCCTTCGGGACTTAACCTGG
ATATAGTAACTAGCA
Found at i:80200602 original size:40 final size:40
Alignment explanation
Indices: 80200565--80200750 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
80200555 GCTACTCGTT
*
80200565 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
80200605 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
80200645 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
80200685 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
80200726 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80200751 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:80208616 original size:40 final size:40
Alignment explanation
Indices: 80208572--80208724 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
80208562 AAATATAGCT
* *
80208572 ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGTACAAATGCCTTCGGGACATAACCCGGATT-TAGTA
* *
80208612 ACTCGTACAGATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGTACAAATGCCTTCGGGACATAACCCGGATTTAGTA
* * ** *
80208652 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTC
1 ACTCGTACAAATGCCTTCGGGA-CATAACCCGGATTTAGTA
* * * *
80208692 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGTACAAATGCCTTCGGGACATAACCCGGA
80208725 CATCATTCCA
Statistics
Matches: 98, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.03
40 82 0.84
41 13 0.13
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
ACTCGTACAAATGCCTTCGGGACATAACCCGGATTTAGTA
Found at i:80209436 original size:2 final size:2
Alignment explanation
Indices: 80209429--80209461 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
80209419 ATGTGCAAAC
80209429 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80209462 AGAGCCGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80215975 original size:42 final size:41
Alignment explanation
Indices: 80215892--80216006 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 41
80215882 CACGGCATGT
* * * **
80215892 GATTTCATGTTAGACCATATCTGGGATATGGCGTTGATATGA
1 GATTTC-TGTAAGACCATGTCTGGGACATGGAATTGATATGA
*
80215934 GATTTCGTGTAAGACCATGTCTGGGACATGGAATTGGTATGA
1 GATTTC-TGTAAGACCATGTCTGGGACATGGAATTGATATGA
* *
80215976 GGTCCTT-TGTAAGACCATGCCTGGGACATGG
1 GAT--TTCTGTAAGACCATGTCTGGGACATGG
80216007 TATCAGCACT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 60 0.97
44 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (41 bp):
GATTTCTGTAAGACCATGTCTGGGACATGGAATTGATATGA
Found at i:80219887 original size:31 final size:29
Alignment explanation
Indices: 80219850--80219907 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 29
80219840 TTAATTCATA
*
80219850 TTTTACATACTTCAACTTCA-CATTTATATTC
1 TTTTACA-ACTT-AA-TTCAGCATATATATTC
80219881 TTTTACAACTTAATTCAGCATATATAT
1 TTTTACAACTTAATTCAGCATATATAT
80219908 ATATAATTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 4 0.16
29 10 0.40
30 4 0.16
31 7 0.28
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.47
Consensus pattern (29 bp):
TTTTACAACTTAATTCAGCATATATATTC
Found at i:80222095 original size:22 final size:21
Alignment explanation
Indices: 80222067--80222114 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
80222057 GTACTACCTC
80222067 AACAGGACA-ACATAAGGCCGTA
1 AACAGGACACACAT-A-GCCGTA
80222089 AACAGGACAGCACATAGCCGTA
1 AACAGGACA-CACATAGCCGTA
80222111 AACA
1 AACA
80222115 TCGCAGCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 19 0.79
23 1 0.04
24 4 0.17
ACGTcount: A:0.46, C:0.25, G:0.21, T:0.08
Consensus pattern (21 bp):
AACAGGACACACATAGCCGTA
Found at i:80222319 original size:22 final size:22
Alignment explanation
Indices: 80222288--80222349 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
80222278 AATATGTTTA
*
80222288 GCACACAGCCATAATCAGGTTG
1 GCACAAAGCCATAATCAGGTTG
*
80222310 GCACAAAGCCAT-ATGTAGGTTG
1 GCACAAAGCCATAAT-CAGGTTG
*
80222332 GCGCAAAGCCATAATCAG
1 GCACAAAGCCATAATCAG
80222350 AATAATTGGC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (22 bp):
GCACAAAGCCATAATCAGGTTG
Found at i:80222655 original size:41 final size:41
Alignment explanation
Indices: 80222492--80222655 Score: 238
Period size: 41 Copynumber: 4.0 Consensus size: 41
80222482 AAAAGCCACC
* * * * * *
80222492 GGTGGATCTACGGTCGTCAAGCAACCATGCGATCCTTAATC
1 GGTGGATCCACAGTTGTCAAGCAACCATGTGATCCTCAATT
* *
80222533 GGTGGATCCACGGTAGTCAAGCAACCATGTGATCCTCAATT
1 GGTGGATCCACAGTTGTCAAGCAACCATGTGATCCTCAATT
80222574 GGTGGATCCACAGTTGTCAAGCAACCATGTGATCCTCAATT
1 GGTGGATCCACAGTTGTCAAGCAACCATGTGATCCTCAATT
* *
80222615 GGTGGATCCATAGTTGTCAAGCAGCCATGTGATCCTCAATT
1 GGTGGATCCACAGTTGTCAAGCAACCATGTGATCCTCAATT
80222656 TCTTCCTCCG
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 114 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (41 bp):
GGTGGATCCACAGTTGTCAAGCAACCATGTGATCCTCAATT
Found at i:80222929 original size:27 final size:27
Alignment explanation
Indices: 80222899--80223251 Score: 307
Period size: 27 Copynumber: 13.1 Consensus size: 27
80222889 TACAAGAGTG
* * *
80222899 TTTTGGTAAATCTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* *
80222926 TTTTGGTAATTTTGCAAA-CTAATGGTA
1 TTTTGGTAATTTTACAAATC-AAGGGTA
* **
80222953 TTTTTGTAATTTTGTAAATCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
** *
80222980 TTTTTTTAATTTTCCAAATCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
80223007 TTTCGATAATTTTCCAAATC-AGTGGTA
1 TTTTGGTAATTTTACAAATCAAG-GGTA
*
80223034 TTTTGGTAATTTTACAAATCGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * * *
80223061 TTTTGGTAATTCTACAAGTTAAAGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * * ** *
80223088 TTTCGATAATTTTGCATGTCGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* *
80223115 TTTTGGTAATTTCACAAATCAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * * *
80223142 TTTTGGTAACTTTAAAAACCAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* *
80223169 TTTTGGAAATTTTACAAATC-GGGAGTA
1 TTTTGGTAATTTTACAAATCAAGG-GTA
* * *
80223196 TTTTGGTAATTTTGCTAATCGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
** *
80223223 TTTTGGTAATTTTGTAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
80223250 TT
1 TT
80223252 CAGTAATTTT
Statistics
Matches: 267, Mismatches: 53, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
26 6 0.02
27 256 0.96
28 5 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAATCAAGGGTA
Found at i:80223263 original size:26 final size:27
Alignment explanation
Indices: 80223228--80223288 Score: 97
Period size: 26 Copynumber: 2.3 Consensus size: 27
80223218 GGGTATTTTG
*
80223228 GTAATTTTGTAAACCAAGGGTA-TTCA
1 GTAATTTTGTAAACCAAGAGTATTTCA
80223254 GTAATTTTGTAAACCAAGAGTATTTCA
1 GTAATTTTGTAAACCAAGAGTATTTCA
*
80223281 ATAATTTT
1 GTAATTTT
80223289 ACCCTACATG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 21 0.66
27 11 0.34
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (27 bp):
GTAATTTTGTAAACCAAGAGTATTTCA
Found at i:80223305 original size:27 final size:27
Alignment explanation
Indices: 80223275--80223350 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
80223265 AACCAAGAGT
* *
80223275 ATTTCAATAATTTTACCCTACATGGGC
1 ATTTCAATAATTCTACCCTACAAGGGC
*
80223302 ATTTCAATAATTCTACCCTACAAGGGT
1 ATTTCAATAATTCTACCCTACAAGGGC
* * *
80223329 ATTTCAGTAATACTAGCCTACA
1 ATTTCAATAATTCTACCCTACA
80223351 GATATAAGAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.34
Consensus pattern (27 bp):
ATTTCAATAATTCTACCCTACAAGGGC
Found at i:80223432 original size:17 final size:16
Alignment explanation
Indices: 80223410--80223443 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
80223400 ATTTATCCCC
*
80223410 TTGGGCCTATGGGCCCA
1 TTGGGCCCAT-GGCCCA
80223427 TTGGGCCCATGGCCCA
1 TTGGGCCCATGGCCCA
80223443 T
1 T
80223444 CATGGCCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.12, C:0.32, G:0.32, T:0.24
Consensus pattern (16 bp):
TTGGGCCCATGGCCCA
Found at i:80227198 original size:48 final size:48
Alignment explanation
Indices: 80227117--80227332 Score: 180
Period size: 48 Copynumber: 4.5 Consensus size: 48
80227107 CATAATGATG
* * ** * * *
80227117 CCATGTCCCTGACATGGTCTTACACGAAATCACATATTGATGTCGATA
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCCGATA
* * * ** *
80227165 CCATGTCCCATACATGGTTTTACACTGGCTCACACGTCGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCCGATA
* * ** *
80227213 CCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCCGATA
* * * * * * * * *
80227261 CCATGTCCCAAACATGGTCTTATACAAGATCTCATCTCGATGCCAATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCCGATA
*
80227309 CCATGTCCCAAACATGGTCTTACA
1 CCATGTCCCAGACATGGTCTTACA
80227333 TCGAATTTCA
Statistics
Matches: 134, Mismatches: 34, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 134 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCCGATA
Found at i:80227247 original size:96 final size:96
Alignment explanation
Indices: 80227113--80227337 Score: 238
Period size: 96 Copynumber: 2.3 Consensus size: 96
80227103 GTCTCATAAT
* ** *** *
80227113 GATGCCATGTCCCTGACATGGTCTTACACGAAATCACATATTGATGTCGATACCATGTCCCATAC
1 GATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCAACACCGATACCATGTCCCAAAC
* ** *
80227178 ATGGTTTTACACTGGCTCACA-CGTCGAGGCC
66 ATGGTCTTACACAAGATCACATC-TCGAGGCC
* * *
80227209 GATGCCATGTCCCAGACATGGTCTTACACTAGCA-CACATATCAACACCGATGCCATGTCCCAAA
1 GATGCCATGTCCCAGACATGGTCTTACACGA-AATCACATATCAACACCGATACCATGTCCCAAA
* * *
80227273 CATGGTCTTATACAAGATCTCATCTCGATGCC
65 CATGGTCTTACACAAGATCACATCTCGAGGCC
* *
80227305 AATGCCATGTCCCAAACATGGTCTTACATCGAA
1 GATGCCATGTCCCAGACATGGTCTTACA-CGAA
80227338 TTTCACATGT
Statistics
Matches: 105, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
96 101 0.96
97 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCAACACCGATACCATGTCCCAAAC
ATGGTCTTACACAAGATCACATCTCGAGGCC
Found at i:80229666 original size:2 final size:2
Alignment explanation
Indices: 80229659--80229687 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
80229649 TTAATTTAGC
80229659 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80229688 ATTCACATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80237138 original size:18 final size:18
Alignment explanation
Indices: 80237115--80237217 Score: 57
Period size: 18 Copynumber: 5.7 Consensus size: 18
80237105 TTTTCTAATT
*
80237115 TCATTCAGTAACATTCAA
1 TCATTCAATAACATTCAA
80237133 TCATTCAATAACAATT-AGA
1 TCATTCAATAAC-ATTCA-A
* * *
80237152 T-GTTCAATAATATTCAG
1 TCATTCAATAACATTCAA
* ** *
80237169 TCACTCTTTAACAGTCAA
1 TCATTCAATAACATTCAA
* * *
80237187 TTATTCACTAACAATCAA
1 TCATTCAATAACATTCAA
* *
80237205 TTATTCAGTAACA
1 TCATTCAATAACA
80237218 ATCTTTTACA
Statistics
Matches: 64, Mismatches: 17, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
17 4 0.06
18 55 0.86
19 5 0.08
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.35
Consensus pattern (18 bp):
TCATTCAATAACATTCAA
Found at i:80237218 original size:18 final size:18
Alignment explanation
Indices: 80237177--80237220 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
80237167 AGTCACTCTT
*
80237177 TAACAGTCAATTATTCAC
1 TAACAATCAATTATTCAC
*
80237195 TAACAATCAATTATTCAG
1 TAACAATCAATTATTCAC
80237213 TAACAATC
1 TAACAATC
80237221 TTTTACACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (18 bp):
TAACAATCAATTATTCAC
Found at i:80237274 original size:18 final size:18
Alignment explanation
Indices: 80237227--80237286 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
80237217 AATCTTTTAC
80237227 ACAGTAGCAGTCAGTTAT
1 ACAGTAGCAGTCAGTTAT
* * **
80237245 CCAATAATAGTCAGTTAT
1 ACAGTAGCAGTCAGTTAT
*
80237263 ACAGTAGCAGTCAATTAT
1 ACAGTAGCAGTCAGTTAT
*
80237281 TCAGTA
1 ACAGTA
80237287 CCTTTATTTA
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (18 bp):
ACAGTAGCAGTCAGTTAT
Found at i:80237513 original size:52 final size:54
Alignment explanation
Indices: 80237399--80237522 Score: 166
Period size: 52 Copynumber: 2.3 Consensus size: 54
80237389 TACACCGTAA
* *
80237399 CGGTAACAGTAACAGTAATAGTAGCGGTACACAAAGTACCTCATTGGAACAAAT
1 CGGTAACAGTAACAGTAACAGTAGAGGTACACAAAGTACCTCATTGGAACAAAT
*
80237453 CGGTAACAGTAACAGTAACAGTA-AGGTAC-CAAAGTACCTC-TTCGGAGCAAAT
1 CGGTAACAGTAACAGTAACAGTAGAGGTACACAAAGTACCTCATT-GGAACAAAT
*
80237505 C-TTGAACAGTAACAGTAA
1 CGGT-AACAGTAACAGTAA
80237523 GACGACACTT
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
51 3 0.05
52 34 0.53
53 5 0.08
54 22 0.34
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.20
Consensus pattern (54 bp):
CGGTAACAGTAACAGTAACAGTAGAGGTACACAAAGTACCTCATTGGAACAAAT
Found at i:80238655 original size:15 final size:16
Alignment explanation
Indices: 80238635--80238679 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
80238625 AGACTATTAT
80238635 ATATTATTTATACTTA
1 ATATTATTTATACTTA
* *
80238651 A-ATTAGTAATACTTA
1 ATATTATTTATACTTA
80238666 ATTATTATTTATAC
1 A-TATTATTTATAC
80238680 ATGTGTATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
15 13 0.57
16 1 0.04
17 9 0.39
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATTATTTATACTTA
Found at i:80238794 original size:17 final size:19
Alignment explanation
Indices: 80238772--80238815 Score: 65
Period size: 17 Copynumber: 2.4 Consensus size: 19
80238762 ATAATATAAT
80238772 TATTTAATTAATAA-TATC
1 TATTTAATTAATAATTATC
*
80238790 T-TTTACTTAATAATTATC
1 TATTTAATTAATAATTATC
80238808 TATTTAAT
1 TATTTAAT
80238816 AACTAAATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 11 0.50
18 6 0.27
19 5 0.23
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTTAATTAATAATTATC
Found at i:80243452 original size:18 final size:18
Alignment explanation
Indices: 80243431--80243558 Score: 62
Period size: 18 Copynumber: 7.1 Consensus size: 18
80243421 AGTCACTCTT
*
80243431 TAACAGTCAGTTATTCAG
1 TAACAGTCAATTATTCAG
*
80243449 TAAC-GATAAATTATTCAG
1 TAACAG-TCAATTATTCAG
* *
80243467 TAACAATCAATTATTTAG
1 TAACAGTCAATTATTCAG
* * ** **
80243485 CAACAATCTTTTACACAG
1 TAACAGTCAATTATTCAG
* * * *
80243503 TAGCAGTGAGTTA-TCTAT
1 TAACAGTCAATTATTC-AG
**
80243521 TAACAGTCTGTTATTCAG
1 TAACAGTCAATTATTCAG
* *
80243539 TAGCAGTAAATTATTCAG
1 TAACAGTCAATTATTCAG
80243557 TA
1 TA
80243559 CCTTTATTTA
Statistics
Matches: 79, Mismatches: 27, Indels: 8
0.69 0.24 0.07
Matches are distributed among these distances:
17 2 0.03
18 75 0.95
19 2 0.03
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (18 bp):
TAACAGTCAATTATTCAG
Found at i:80245035 original size:18 final size:19
Alignment explanation
Indices: 80245007--80245060 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
80244997 ATAATATTAT
80245007 TATTTAATTAATAAATATC
1 TATTTAATTAATAAATATC
* *
80245026 T-TTTACTTAATAATTATC
1 TATTTAATTAATAAATATC
80245044 TATTTAA-TAACTAAATA
1 TATTTAATTAA-TAAATA
80245061 CAAGTATTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 19 0.66
19 10 0.34
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (19 bp):
TATTTAATTAATAAATATC
Found at i:80245277 original size:20 final size:20
Alignment explanation
Indices: 80245237--80245273 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
80245227 TTACAAATGT
80245237 ATGTATAATATTTATTACAC
1 ATGTATAATATTTATTACAC
*
80245257 ATGTAT-ATTTTTATTAC
1 ATGTATAATATTTATTAC
80245274 CACACATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.51
Consensus pattern (20 bp):
ATGTATAATATTTATTACAC
Found at i:80248474 original size:38 final size:38
Alignment explanation
Indices: 80248431--80248646 Score: 153
Period size: 38 Copynumber: 5.2 Consensus size: 38
80248421 TTTCAAATTA
80248431 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * * *
80248469 ACATGTTTAACCATGGTATATCCACTTAGCACCACATTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC-GT--T
* * *
80248510 GAATCAATATATGTAACTGTGGCATATCCACTTAGCATCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * * *
80248554 ACATGTTTAATCGTGGTATATCCACTTAGCACCATGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
80248595 GAATCAATATATGTAACCATGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
80248639 ACATGTAT
1 ACATGTAT
80248647 CAATATGTCT
Statistics
Matches: 135, Mismatches: 25, Indels: 36
0.69 0.13 0.18
Matches are distributed among these distances:
38 57 0.42
39 2 0.01
40 7 0.05
41 4 0.03
42 2 0.01
43 2 0.01
44 4 0.03
45 6 0.04
46 2 0.01
47 49 0.36
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:80248535 original size:85 final size:85
Alignment explanation
Indices: 80248438--80248644 Score: 351
Period size: 85 Copynumber: 2.4 Consensus size: 85
80248428 TTAACATGTA
80248438 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
80248503 CATTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
* * * *
80248523 TAACTGTGGCATATCCACTTAGCATCACGTTACATGTTTAATCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
**
80248588 TGTTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
*
80248608 TAACCATGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
80248645 ATCAATATGT
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 113 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
CATTAATGAATCAATATATG
Found at i:80248671 original size:48 final size:47
Alignment explanation
Indices: 80248556--80248686 Score: 181
Period size: 48 Copynumber: 2.8 Consensus size: 47
80248546 ATCACGTTAC
* *
80248556 ATGTTTAATCGTGGTATATCCACTTAGCACCATGTTAATGAATCAAT
1 ATGTCTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
* * * * * *
80248603 ATATGTAACCATGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTCTAATCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
80248651 ATGTCTAATCGTGGTATATCCACTTAGCACCACGTT
1 ATGTCTAATCGTGGTATATCCACTTAGCACCACGTT
80248687 TTTCCATTCT
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 31 0.44
48 40 0.56
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.33
Consensus pattern (47 bp):
ATGTCTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
Found at i:80252323 original size:80 final size:80
Alignment explanation
Indices: 80252239--80252387 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80252229 TATGGTAACC
* * * *
80252239 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80252303 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80252319 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80252384 CCGG
66 CCGG
80252388 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80252329 original size:40 final size:38
Alignment explanation
Indices: 80252280--80252387 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80252270 ATCACGATTT
*
80252280 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80252320 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80252360 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80252388 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80254702 original size:7 final size:6
Alignment explanation
Indices: 80254665--80254726 Score: 74
Period size: 6 Copynumber: 10.7 Consensus size: 6
80254655 AGTCCATTAA
* * * *
80254665 TTTTA- TTTTA- TTTTCT TTTTAT TTTTAT TTTAAT TTTTAG TTTTAG
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
80254711 TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTT
80254727 TCTATTTAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
5 9 0.18
6 41 0.82
ACGTcount: A:0.16, C:0.02, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:80257883 original size:29 final size:29
Alignment explanation
Indices: 80257841--80257896 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
80257831 CTGTGTGTCC
80257841 TCTGTTTTAGAAATTTTTCAACTTTTTCT
1 TCTGTTTTAGAAATTTTTCAACTTTTTCT
80257870 TCTGTTTTAGAAATTTTTCAACTTTTT
1 TCTGTTTTAGAAATTTTTCAACTTTTT
80257897 TCTTAAAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.21, C:0.12, G:0.07, T:0.59
Consensus pattern (29 bp):
TCTGTTTTAGAAATTTTTCAACTTTTTCT
Found at i:80260376 original size:23 final size:23
Alignment explanation
Indices: 80260345--80260473 Score: 127
Period size: 24 Copynumber: 5.5 Consensus size: 23
80260335 ACAACTCGTA
*
80260345 AGAGCTTACTGTTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCAAT
* * *
80260368 GGAGCTTACCT-ATTCAGCTCAAA
1 AGAGCTTA-CTGTTTCAGCTCAAT
*
80260391 AGAGCTTACTG-TTCAGCTCGAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
80260413 AGAGCTTACCGTTTTCAGCTCAAT
1 AGAGCTTACTG-TTTCAGCTCAAT
**
80260437 AGAGCTTACTGTTTATCAGCTCAGG
1 AGAGCTTACTG-TT-TCAGCTCAAT
80260462 AGGAGCTTACTG
1 A-GAGCTTACTG
80260474 ACCATGACTC
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
22 21 0.24
23 23 0.26
24 25 0.28
25 9 0.10
26 10 0.11
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:80260430 original size:46 final size:45
Alignment explanation
Indices: 80260344--80260449 Score: 151
Period size: 46 Copynumber: 2.3 Consensus size: 45
80260334 CACAACTCGT
*
80260344 AAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCTATTCAGCTCAA
1 AAGAGCTTACTG-TTCAGCTCATTAGAGCTTACCTATTCAGCTCAA
*
80260390 AAGAGCTTACTGTTCAGCTCGA-TAGAGCTTACCGTTTTCAGCTCAA
1 AAGAGCTTACTGTTCAGCTC-ATTAGAGCTTACC-TATTCAGCTCAA
*
80260436 TAGAGCTTACTGTT
1 AAGAGCTTACTGTT
80260450 TATCAGCTCA
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
45 18 0.33
46 37 0.67
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (45 bp):
AAGAGCTTACTGTTCAGCTCATTAGAGCTTACCTATTCAGCTCAA
Found at i:80260438 original size:24 final size:24
Alignment explanation
Indices: 80260345--80260459 Score: 121
Period size: 23 Copynumber: 4.9 Consensus size: 24
80260335 ACAACTCGTA
* *
80260345 AGAGCTTACTG-TTTCAGCTCATT
1 AGAGCTTACCGTTTTCAGCTCAAT
* * *
80260368 GGAGCTTACC-TATTCAGCTCAAA
1 AGAGCTTACCGTTTTCAGCTCAAT
* *
80260391 AGAGCTTA-C-TGTTCAGCTCGAT
1 AGAGCTTACCGTTTTCAGCTCAAT
80260413 AGAGCTTACCGTTTTCAGCTCAAT
1 AGAGCTTACCGTTTTCAGCTCAAT
*
80260437 AGAGCTTACTGTTTATCAGCTCA
1 AGAGCTTACCGTTT-TCAGCTCA
80260460 GGAGGAGCTT
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
22 19 0.25
23 25 0.33
24 24 0.32
25 8 0.11
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (24 bp):
AGAGCTTACCGTTTTCAGCTCAAT
Found at i:80260471 original size:26 final size:24
Alignment explanation
Indices: 80260345--80260473 Score: 115
Period size: 23 Copynumber: 5.5 Consensus size: 24
80260335 ACAACTCGTA
*
80260345 AGAGCTTACTG-TTTCAGCTCATTG
1 AGAGCTTACTGTTTTCAGCTCA-AG
* * *
80260369 -GAGCTTAC-CTATTCAGCTCAAA
1 AGAGCTTACTGTTTTCAGCTCAAG
* *
80260391 AGAGCTTACTG--TTCAGCTCGAT
1 AGAGCTTACTGTTTTCAGCTCAAG
* *
80260413 AGAGCTTACCGTTTTCAGCTCAAT
1 AGAGCTTACTGTTTTCAGCTCAAG
*
80260437 AGAGCTTACTGTTTATCAGCTCAGG
1 AGAGCTTACTGTTT-TCAGCTCAAG
80260462 AGGAGCTTACTG
1 A-GAGCTTACTG
80260474 ACCATGACTC
Statistics
Matches: 86, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
22 19 0.22
23 25 0.29
24 23 0.27
25 9 0.10
26 10 0.12
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (24 bp):
AGAGCTTACTGTTTTCAGCTCAAG
Found at i:80277184 original size:25 final size:25
Alignment explanation
Indices: 80277150--80277200 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
80277140 AAACAATGAA
80277150 ACTAACTATACCAAGGTCTTAAGTG
1 ACTAACTATACCAAGGTCTTAAGTG
80277175 ACTAACTATACCAAGGTCTTAAGTG
1 ACTAACTATACCAAGGTCTTAAGTG
80277200 A
1 A
80277201 TAGTTGATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (25 bp):
ACTAACTATACCAAGGTCTTAAGTG
Found at i:80279299 original size:40 final size:39
Alignment explanation
Indices: 80279172--80279301 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
80279162 ATGCTGGAAA
*
80279172 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * * **
80279212 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTG-CAGTGG
*
80279252 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
80279292 TTATATCCGG
1 TTATATCCGG
80279302 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 4 0.05
40 70 0.95
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:80290577 original size:2 final size:2
Alignment explanation
Indices: 80290561--80290595 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
80290551 CCTAAAATAC
* *
80290561 TA TA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80290596 TAATAATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:80290934 original size:20 final size:20
Alignment explanation
Indices: 80290871--80290934 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 20
80290861 ATTTTTATAT
80290871 AATTTTAAT-TATATTA-TAA
1 AATTTTAATATAT-TTATTAA
* * * *
80290890 ATATTTATTAGATATTCATTTA
1 A-ATTT-TAATATATTTATTAA
80290912 AATTTTAATATATTTATTAA
1 AATTTTAATATATTTATTAA
80290932 AAT
1 AAT
80290935 AATTATAACG
Statistics
Matches: 33, Mismatches: 8, Indels: 7
0.69 0.17 0.15
Matches are distributed among these distances:
19 1 0.03
20 18 0.55
21 8 0.24
22 6 0.18
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (20 bp):
AATTTTAATATATTTATTAA
Found at i:80294255 original size:5 final size:5
Alignment explanation
Indices: 80294245--80294273 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
80294235 AATTAATTAT
80294245 AAATA AAATA AAATA AAATA AAATA AAAT
1 AAATA AAATA AAATA AAATA AAATA AAAT
80294274 TCAATTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:80295773 original size:19 final size:19
Alignment explanation
Indices: 80295746--80295794 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
80295736 AATACAAAAT
*
80295746 AATTCAAAATAGTTT-CAAA
1 AATTTAAAATA-TTTACAAA
*
80295765 AATTTAAAATATTTATAAA
1 AATTTAAAATATTTACAAA
80295784 AATTTCAAAAT
1 AATTT-AAAAT
80295795 TTATATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 3 0.12
19 18 0.69
20 5 0.19
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (19 bp):
AATTTAAAATATTTACAAA
Found at i:80295793 original size:9 final size:10
Alignment explanation
Indices: 80295740--80295794 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
80295730 TTCAACAATA
*
80295740 CAAAATAATT
1 CAAAATATTT
80295750 CAAAATAGTTT
1 CAAAATA-TTT
80295761 CAAAA-ATTT
1 CAAAATATTT
80295770 -AAAATATTT
1 CAAAATATTT
*
80295779 -ATAAAAATTT
1 CA-AAATATTT
80295789 CAAAAT
1 CAAAAT
80295795 TTATATTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
8 4 0.11
9 8 0.21
10 18 0.47
11 8 0.21
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (10 bp):
CAAAATATTT
Done.