Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 258 of 433
Found at i:80295796 original size:18 final size:19
Alignment explanation
Indices: 80295762--80295799 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
80295752 AAATAGTTTC
80295762 AAAAATTTAAAATATTTAT
1 AAAAATTTAAAATATTTAT
*
80295781 AAAAATTTCAAA-ATTTAT
1 AAAAATTTAAAATATTTAT
80295799 A
1 A
80295800 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATTTAAAATATTTAT
Found at i:80295824 original size:25 final size:24
Alignment explanation
Indices: 80295773--80295825 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
80295763 AAAATTTAAA
* **
80295773 ATATTTATAAAAATTTCAAAATTT
1 ATATTTATAAAAAATTCAAAAAAT
*
80295797 ATATTTTTAAAAAATTCTAAAAAAT
1 ATATTTATAAAAAATTC-AAAAAAT
80295822 ATAT
1 ATAT
80295826 AAATTAAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 15 0.62
25 9 0.38
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (24 bp):
ATATTTATAAAAAATTCAAAAAAT
Found at i:80298318 original size:22 final size:22
Alignment explanation
Indices: 80298285--80298328 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
80298275 TGTATGTATG
*
80298285 TATTTGTATTTAGTCTTTTAAT
1 TATTTGTATTTAATCTTTTAAT
*
80298307 TATTT-TATTTTAATGTTTTAAT
1 TATTTGTA-TTTAATCTTTTAAT
80298329 GCTATATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.25, C:0.02, G:0.07, T:0.66
Consensus pattern (22 bp):
TATTTGTATTTAATCTTTTAAT
Found at i:80298361 original size:3 final size:3
Alignment explanation
Indices: 80298353--80298397 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
80298343 TATATATCAA
**
80298353 TAT TAT TAT TAT CCT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
80298398 CATCGTAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:80298498 original size:14 final size:14
Alignment explanation
Indices: 80298479--80298509 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
80298469 TATATGTTGA
80298479 ATGTTGTATTGTCC
1 ATGTTGTATTGTCC
80298493 ATGTTGTATTGTCC
1 ATGTTGTATTGTCC
80298507 ATG
1 ATG
80298510 CATTTTACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.13, G:0.23, T:0.48
Consensus pattern (14 bp):
ATGTTGTATTGTCC
Found at i:80298746 original size:23 final size:22
Alignment explanation
Indices: 80298684--80298800 Score: 89
Period size: 23 Copynumber: 5.2 Consensus size: 22
80298674 TTTTTAATAT
80298684 TATATTT-TATATA-TATTATTA
1 TATATTTCTA-ATACTATTATTA
*
80298705 TATGTATTT-TAATATTATTAGTTA
1 TA--TATTTCTAATACTATTA-TTA
* **
80298729 TATATTTCTTATACTATTATGCG
1 TATATTTCTAATACTATTAT-TA
* *
80298752 TATATTTCTAATATTA-TATTG
1 TATATTTCTAATACTATTATTA
*
80298773 TATATTGCTAATACTATTATTTA
1 TATATTTCTAATACTATTA-TTA
80298796 TATAT
1 TATAT
80298801 ATATATGTGT
Statistics
Matches: 78, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
21 17 0.22
22 14 0.18
23 42 0.54
24 5 0.06
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (22 bp):
TATATTTCTAATACTATTATTA
Found at i:80298800 original size:44 final size:45
Alignment explanation
Indices: 80298697--80298800 Score: 113
Period size: 44 Copynumber: 2.3 Consensus size: 45
80298687 ATTTTATATA
* * *
80298697 TATTATTATATGTATTTTAATATTATTAGTTATATATTTCTTATAC
1 TATTATT-TATATATTTTAATATTATTAGTTATATATTGCTAATAC
*** *
80298743 TATTATGCGTATATTTCTAATATTA-TA-TTGTATATTGCTAATAC
1 TATTATTTATATATTT-TAATATTATTAGTTATATATTGCTAATAC
80298787 TATTATTTATATAT
1 TATTATTTATATAT
80298801 ATATATGTGT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
44 25 0.53
45 8 0.17
46 14 0.30
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56
Consensus pattern (45 bp):
TATTATTTATATATTTTAATATTATTAGTTATATATTGCTAATAC
Found at i:80311566 original size:88 final size:88
Alignment explanation
Indices: 80311417--80311893 Score: 493
Period size: 88 Copynumber: 5.5 Consensus size: 88
80311407 TTTTCGTATG
*
80311417 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
*
80311481 ATTGATATTTTTTCAATTTAC-GCT
66 ATTAATATTTTTTCAATTT-CTG-T
* * *
80311505 TTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGA-ACGCTAAGGTATTTTC
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTATTTTC
* *
80311568 AATTAAT-TTTTTTTAATTTATGCT
65 AATTAATATTTTTTCAATTTCTG-T
* * * * ** **
80311592 TTTC-AAAAATTAACTCATATTAC-A-A---GAGGTGAGCCTCGAGTCACATTCCAAGGTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTATTTT
* * *
80311651 CAA--AATCTATTTTGCAAATTCTGT
64 CAATTAATAT-TTTTTCAATTTCTGT
*
80311675 TTTCAAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
*
80311740 ATT--TTTGTTTTTCAATTTCTGT
66 ATTAATAT-TTTTTCAATTTCTGT
*
80311762 CCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 -TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
** * *
80311827 CAATGGATGA--TTTGCAAATTCTGT
64 CAATTAAT-ATTTTTTCAATTTCTGT
*
80311851 TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
80311894 TGACTCGCGT
Statistics
Matches: 332, Mismatches: 38, Indels: 38
0.81 0.09 0.09
Matches are distributed among these distances:
82 16 0.05
83 7 0.02
84 42 0.13
85 2 0.01
86 2 0.01
87 67 0.20
88 107 0.32
89 88 0.27
91 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (88 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTAATATTTTTTCAATTTCTGT
Found at i:80311716 original size:171 final size:171
Alignment explanation
Indices: 80311421--80311893 Score: 455
Period size: 171 Copynumber: 2.7 Consensus size: 171
80311411 CGTATGTTTC
* * * * ** *
80311421 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAATTGA
1 AAAAATCAACTCATATTACGAGA-G-GAGGTGAGCCTCAGCACACGCCAAGGTATTTTCAATCGA
* * * *
80311486 TATTTTTTCAATTTAC-GCTTTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG
64 TA--TTTGCAAATT-CTG-TTTTCAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTC-A
*
80311549 GGA-ACGCTAAGGTATTTTCAATTAATTT-TTTTT-AATTTATG-CTTTTC-
123 GGACACGCTAAGGTATTTTCAATT--TTTGTTTTTCAATTTATGTC-CTTCA
* **
80311596 AAAAATTAACTCATATTAC-A-A-GAGGTGAGCCTCGAGTCACATTCCAAGGTATTTTCAAAATC
1 AAAAATCAACTCATATTACGAGAGGAGGTGAGCCTC-AG-CACACGCCAAGGTATTTTC--AATC
*
80311658 TAT-TTTGCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGA
62 GATATTTGCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAG-TGAGTTGAGCCTCAGGA
* *
80311722 CACGCTGAGGTATTTTCAATTTTTGTTTTTCAATTTCTGTCCTTCAA
126 CACGCTAAGGTATTTTCAATTTTTGTTTTTCAATTTATGTCCTTC-A
* * * ** *
80311769 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATGGA
1 AAAAATCAACTCATATTACGAGA-G-GAGGTGAGCCTCAGCACACGCCAAGGTATTTTCAATCGA
80311834 TGATTTGCAAATTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
64 T-ATTTGCAAATTCTGTTTTC-AAAAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCT
80311894 TGACTCGCGT
Statistics
Matches: 248, Mismatches: 28, Indels: 42
0.78 0.09 0.13
Matches are distributed among these distances:
169 3 0.01
170 26 0.10
171 75 0.30
172 14 0.06
173 18 0.07
174 12 0.05
175 18 0.07
176 32 0.13
177 37 0.15
178 13 0.05
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (171 bp):
AAAAATCAACTCATATTACGAGAGGAGGTGAGCCTCAGCACACGCCAAGGTATTTTCAATCGATA
TTTGCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGACACGC
TAAGGTATTTTCAATTTTTGTTTTTCAATTTATGTCCTTCA
Found at i:80311777 original size:89 final size:87
Alignment explanation
Indices: 80311417--80311984 Score: 474
Period size: 88 Copynumber: 6.5 Consensus size: 87
80311407 TTTTCGTATG
*
80311417 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
80311481 ATTGATATTTTTTCAATTTAC-G-C
66 ATT--TATTTTTTCAATTT-CTGTC
* * *
80311504 TTTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGA-ACGCTAAGGTATTTT
1 -TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTATTTT
* * *
80311567 CAATTAATTTTTTTTAATTTATG-C
64 CAATTTA-TTTTTTCAATTTCTGTC
* * * * ** **
80311591 TTTTC-AAAAATTAACTCATATTAC-A-A---GAGGTGAGCCTCGAGTCACATTCCAAGGTATTT
1 -TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTATTT
* * *
80311650 TCAAAATCTA-TTTTGCAAATTCTGT-
63 TC--AATTTATTTTTTCAATTTCTGTC
*
80311675 TTTCAAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
*
80311740 ATTTTTGTTTTTCAATTTCTGTC
66 ATTTAT-TTTTTCAATTTCTGTC
*
80311763 CTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
** * * *
80311828 AATGGATGATTTGCAAATTCTGT-
65 AATTTAT-TTTTTCAATTTCTGTC
* * * *
80311851 TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT--TGACTCGCGTGCTGCGCTAT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC-TG-AG-G-TAT
* * * *
80311914 TTTCAATTTCTGTTTT-AATGTATGT-
61 TTTCAATTTATTTTTTCAATTTCTGTC
* * * * *
80311939 TTTTAAAGAGTCAACTCATATCGCGAGAAGTGAGTTGAG-CTCAGGA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
80311985 TCATACACCA
Statistics
Matches: 398, Mismatches: 58, Indels: 48
0.79 0.12 0.10
Matches are distributed among these distances:
82 13 0.03
83 5 0.01
84 40 0.10
85 6 0.02
86 15 0.04
87 97 0.24
88 117 0.29
89 94 0.24
90 11 0.03
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (87 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTTATTTTTTCAATTTCTGTC
Found at i:80313814 original size:12 final size:12
Alignment explanation
Indices: 80313797--80313831 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
80313787 TATATCAATA
80313797 TTATTATTATCC
1 TTATTATTATCC
**
80313809 TTATTATTATTT
1 TTATTATTATCC
80313821 TTATTATTATC
1 TTATTATTATC
80313832 ATCGTAGTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (12 bp):
TTATTATTATCC
Found at i:80314099 original size:23 final size:22
Alignment explanation
Indices: 80314073--80314136 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
80314063 TTATTAGTTA
*
80314073 TATATTTCTTATACTATTATGCG
1 TATATTTCTAATACTATTAT-CG
* *
80314096 TATATTTCTAATATTA-TATTG
1 TATATTTCTAATACTATTATCG
*
80314117 TATATTGCTAATACTATTAT
1 TATATTTCTAATACTATTAT
80314137 ATATATATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 15 0.43
22 6 0.17
23 14 0.40
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.53
Consensus pattern (22 bp):
TATATTTCTAATACTATTATCG
Found at i:80314141 original size:21 final size:21
Alignment explanation
Indices: 80314044--80314142 Score: 67
Period size: 23 Copynumber: 4.6 Consensus size: 21
80314034 TTTATATATT
* * *
80314044 TATTATATGTATCT-TAATAT
1 TATTATATATATTTCTAATAC
*
80314064 TATTAGTTATATATTTCTTATAC
1 TATTA--TATATATTTCTAATAC
* *
80314087 TATTATGCGTATATTTCTAATAT
1 TATTAT--ATATATTTCTAATAC
* *
80314110 TA-TATTGTATATTGCTAATAC
1 TATTA-TATATATTTCTAATAC
80314131 TATTATATATAT
1 TATTATATATAT
80314143 ATATATGTGT
Statistics
Matches: 62, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
20 5 0.08
21 22 0.35
22 11 0.18
23 24 0.39
ACGTcount: A:0.33, C:0.07, G:0.06, T:0.54
Consensus pattern (21 bp):
TATTATATATATTTCTAATAC
Found at i:80314144 original size:44 final size:46
Alignment explanation
Indices: 80314058--80314144 Score: 106
Period size: 44 Copynumber: 1.9 Consensus size: 46
80314048 ATATGTATCT
* * * *
80314058 TAATATTATTAGTTATATATTTCTTATACTATTATGCGTATATTTC
1 TAATATTATTAGTTATATATTGCTAATACTATTATACATATATTTC
* *
80314104 TAATATTA-TA-TTGTATATTGCTAATACTATTATATATATAT
1 TAATATTATTAGTTATATATTGCTAATACTATTATACATATAT
80314145 ATATGTGTGT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 25 0.71
45 2 0.06
46 8 0.23
ACGTcount: A:0.34, C:0.07, G:0.06, T:0.53
Consensus pattern (46 bp):
TAATATTATTAGTTATATATTGCTAATACTATTATACATATATTTC
Found at i:80321366 original size:2 final size:2
Alignment explanation
Indices: 80321359--80321389 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
80321349 GTTTTCATAA
80321359 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80321390 GAAAGTGCGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80323086 original size:71 final size:71
Alignment explanation
Indices: 80322970--80323113 Score: 288
Period size: 71 Copynumber: 2.0 Consensus size: 71
80322960 GTACCAAATA
80322970 AACTAGCCTCAATATACATATATGTCTTCTATAGCAAAGTACCAATTCACAACAAGTTATAAGAC
1 AACTAGCCTCAATATACATATATGTCTTCTATAGCAAAGTACCAATTCACAACAAGTTATAAGAC
80323035 ATATAT
66 ATATAT
80323041 AACTAGCCTCAATATACATATATGTCTTCTATAGCAAAGTACCAATTCACAACAAGTTATAAGAC
1 AACTAGCCTCAATATACATATATGTCTTCTATAGCAAAGTACCAATTCACAACAAGTTATAAGAC
80323106 ATATAT
66 ATATAT
80323112 AA
1 AA
80323114 TATGCACATT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.29
Consensus pattern (71 bp):
AACTAGCCTCAATATACATATATGTCTTCTATAGCAAAGTACCAATTCACAACAAGTTATAAGAC
ATATAT
Found at i:80326084 original size:50 final size:51
Alignment explanation
Indices: 80325995--80326123 Score: 170
Period size: 50 Copynumber: 2.5 Consensus size: 51
80325985 GACCATGGCA
* * * *
80325995 ACAAGTGATAAGCGATAGCTTCGGCTACATTTATTTGATCAAAGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
* * *
80326046 A-AAGTGATAAGTGATAGATTCGGTTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
* *
80326096 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
80326124 CTGATTAGTG
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 43 0.65
51 23 0.35
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
Found at i:80326137 original size:31 final size:31
Alignment explanation
Indices: 80326099--80326216 Score: 157
Period size: 31 Copynumber: 3.8 Consensus size: 31
80326089 ACAAATGACA
80326099 AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
* *
80326130 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
* * * *
80326161 AGTGAAAAATAGTAGCTCCGGCTGCCTG-TT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
*
80326191 CAGTGAATAGTGGTAGCTTCGGCTAC
1 -AGTGAAAAGTGGTAGCTTCGGCTAC
80326217 AAGTGACAAG
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
30 1 0.01
31 72 0.99
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
Found at i:80327462 original size:39 final size:39
Alignment explanation
Indices: 80327419--80327554 Score: 168
Period size: 39 Copynumber: 3.5 Consensus size: 39
80327409 CTTTAAACCA
* *
80327419 GGATATATTTCCAGTATATAGCCTGCGAACCTTAAGTCC
1 GGATATAATTCCAGCATATAGCCTGCGAACCTTAAGTCC
* * **
80327458 GGATATAATTCCAGCATATAGCCTGCGGGTA-TTTAAACCC
1 GGATATAATTCCAGCATATAGCCTGC--GAACCTTAAGTCC
* *
80327498 GGATATAATTCCAGCACATAGCCTGCGGACCTTAAGTCC
1 GGATATAATTCCAGCATATAGCCTGCGAACCTTAAGTCC
80327537 GGATATAATTCCAG-ATAT
1 GGATATAATTCCAGCATAT
80327555 CATGCATATT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
38 5 0.06
39 44 0.54
40 31 0.38
41 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (39 bp):
GGATATAATTCCAGCATATAGCCTGCGAACCTTAAGTCC
Found at i:80327530 original size:79 final size:78
Alignment explanation
Indices: 80327410--80327554 Score: 236
Period size: 79 Copynumber: 1.8 Consensus size: 78
80327400 CCTTCGGGAC
* * *
80327410 TTTAAACCAGGATATATTTCCAGTATATAGCCTGCGAACCTTAAGTCCGGATATAATTCCAGCAT
1 TTTAAACCAGGATATAATTCCAGCACATAGCCTGCGAACCTTAAGTCCGGATATAATTCCAG-AT
80327475 ATAGCCTGCGGGTA
65 ATAGCCTGCGGGTA
* *
80327489 TTTAAACCCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGATA
1 TTTAAACCAGGATATAATTCCAGCACATAGCCTGCGAACCTTAAGTCCGGATATAATTCCAGATA
80327554 T
66 T
80327555 CATGCATATT
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
78 4 0.07
79 57 0.93
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (78 bp):
TTTAAACCAGGATATAATTCCAGCACATAGCCTGCGAACCTTAAGTCCGGATATAATTCCAGATA
TAGCCTGCGGGTA
Found at i:80328535 original size:63 final size:63
Alignment explanation
Indices: 80328436--80328561 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
80328426 CCATTCAATC
80328436 TTGTTTAAAGCCGATTCTATCTTGTTCATATTAAGGACATAAATCACTTAAAAGAAATTCTAA
1 TTGTTTAAAGCCGATTCTATCTTGTTCATATTAAGGACATAAATCACTTAAAAGAAATTCTAA
80328499 TTGTTTAAAGCCGATTCTATCTTGTTCATATTAAGGACATAAATCACTTAAAAGAAATTCTAA
1 TTGTTTAAAGCCGATTCTATCTTGTTCATATTAAGGACATAAATCACTTAAAAGAAATTCTAA
80328562 CCTTTCGCAC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (63 bp):
TTGTTTAAAGCCGATTCTATCTTGTTCATATTAAGGACATAAATCACTTAAAAGAAATTCTAA
Found at i:80331704 original size:13 final size:13
Alignment explanation
Indices: 80331686--80331717 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
80331676 CGGATCAACA
80331686 CGAATACCCGATG
1 CGAATACCCGATG
80331699 CGAATACCCGATG
1 CGAATACCCGATG
80331712 CGAATA
1 CGAATA
80331718 AAAAACTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.28, G:0.22, T:0.16
Consensus pattern (13 bp):
CGAATACCCGATG
Found at i:80335225 original size:39 final size:39
Alignment explanation
Indices: 80335182--80335319 Score: 172
Period size: 39 Copynumber: 3.5 Consensus size: 39
80335172 GACTCTAAAC
* *
80335182 CCGGATATATTTACAGCATATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCATATAGCCTGCGGACCTTAAGT
* * * **
80335221 CCGGATATAATTCCAACATATAGCCTGTAGGTA-TTTAAAC
1 CCGGATATAATTCCAGCATATAGCCTG-CGG-ACCTTAAGT
*
80335261 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCATATAGCCTGCGGACCTTAAGT
80335300 CCGGATATAATTCCAG-ATAT
1 CCGGATATAATTCCAGCATAT
80335320 CATGCATATT
Statistics
Matches: 82, Mismatches: 14, Indels: 7
0.80 0.14 0.07
Matches are distributed among these distances:
38 4 0.05
39 46 0.56
40 31 0.38
41 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (39 bp):
CCGGATATAATTCCAGCATATAGCCTGCGGACCTTAAGT
Found at i:80345126 original size:51 final size:51
Alignment explanation
Indices: 80345041--80345146 Score: 126
Period size: 51 Copynumber: 2.1 Consensus size: 51
80345031 CGGATGCCCG
* * *
80345041 GTGGCCTACACATAGTACCGCCCTTGTAGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTACACATAGTACCACACTTGTAGACAAAGCTACCTT-TTACACAAA
* * *
80345092 GTGGCCTTCACATAGTACCACACTTGT-GAACAAAGCTATCTTTTACACATA
1 GTGGCCTACACATAGTACCACACTTGTAG-ACAAAGCTACCTTTTACACAAA
80345143 GTGG
1 GTGG
80345147 TTTGCACTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
50 3 0.06
51 44 0.94
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (51 bp):
GTGGCCTACACATAGTACCACACTTGTAGACAAAGCTACCTTTTACACAAA
Found at i:80353238 original size:40 final size:39
Alignment explanation
Indices: 80353193--80353399 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
80353183 CGGAATACAA
*
80353193 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
80353233 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
80353273 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
80353313 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
80353353 CCGG-TATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
80353392 CCGGATAT
1 CCGGATAT
80353400 CATTCAATTG
Statistics
Matches: 139, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 31 0.22
40 108 0.78
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:80353333 original size:80 final size:80
Alignment explanation
Indices: 80353193--80353398 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
80353183 CGGAATACAA
* * *
80353193 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
80353257 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
80353273 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
80353337 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
80353353 CCGG-TATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
80353399 TCATTCAATT
Statistics
Matches: 106, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
79 36 0.34
80 68 0.64
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:80361269 original size:40 final size:39
Alignment explanation
Indices: 80361224--80361430 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
80361214 CGGAATACAA
*
80361224 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
80361264 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
80361304 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
80361344 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
80361384 CCGG-TATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
80361423 CCGGATAT
1 CCGGATAT
80361431 CATTCAATTG
Statistics
Matches: 139, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 31 0.22
40 108 0.78
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:80361364 original size:80 final size:80
Alignment explanation
Indices: 80361224--80361429 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
80361214 CGGAATACAA
* * *
80361224 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
80361288 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
80361304 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
80361368 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
80361384 CCGG-TATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
80361430 TCATTCAATT
Statistics
Matches: 106, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
79 36 0.34
80 68 0.64
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:80364448 original size:93 final size:93
Alignment explanation
Indices: 80364336--80364506 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80364326 GCCCATAAGT
* *
80364336 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80364401 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
80364429 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80364494 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80364507 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80364503 original size:46 final size:46
Alignment explanation
Indices: 80364328--80364503 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
80364318 TGTAACCCGC
* * *
80364328 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
80364374 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
80364424 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
80364467 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80364504 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:80366908 original size:29 final size:29
Alignment explanation
Indices: 80366869--80366956 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
80366859 CAAAGATAAC
*
80366869 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
80366898 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
80366927 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
80366957 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:80366927 original size:15 final size:15
Alignment explanation
Indices: 80366869--80366947 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
80366859 CAAAGATAAC
*
80366869 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
80366883 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
80366898 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
80366912 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
80366927 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
80366942 AAGAAA
1 AAGAAA
80366948 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:80366956 original size:15 final size:15
Alignment explanation
Indices: 80366880--80366956 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
80366870 AGAAAACCGA
80366880 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
80366895 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
80366909 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
80366923 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
80366939 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
80366954 ATA
1 ATA
80366957 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:80370012 original size:93 final size:93
Alignment explanation
Indices: 80369900--80370070 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80369890 GCCCATAAGT
* *
80369900 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80369965 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
80369993 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80370058 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80370071 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80370067 original size:46 final size:46
Alignment explanation
Indices: 80369892--80370067 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
80369882 TGTAACCCGC
* * *
80369892 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
80369938 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
80369988 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
80370031 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80370068 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:80378056 original size:20 final size:20
Alignment explanation
Indices: 80378013--80378056 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
80378003 GATGCTTGGT
* *
80378013 TTTATTTCATTTATTTAGTA
1 TTTATTTCATTAATTTACTA
80378033 TTTATTT-ATTAATTTACTA
1 TTTATTTCATTAATTTACTA
80378052 GTTTA
1 -TTTA
80378057 ACCTTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTATTTCATTAATTTACTA
Found at i:80382282 original size:25 final size:25
Alignment explanation
Indices: 80382237--80382352 Score: 135
Period size: 25 Copynumber: 4.7 Consensus size: 25
80382227 CTGTAATATG
*
80382237 CCACAAAGGC-TTTCAGATATCTCA
1 CCACAAAGGCTTTTCAGGTATCTCA
*
80382261 CCACAAGGGCTTTTCAGGTATCTCA
1 CCACAAAGGCTTTTCAGGTATCTCA
* * *
80382286 CCACGAAGGCTTTTCAAGTATCTTA
1 CCACAAAGGCTTTTCAGGTATCTCA
* * **
80382311 CCATAAAGGCTTTTTAGGTATCTTG
1 CCACAAAGGCTTTTCAGGTATCTCA
*
80382336 CCACAAAGGATTTTCAG
1 CCACAAAGGCTTTTCAG
80382353 ATAATCCATA
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
24 9 0.12
25 68 0.88
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (25 bp):
CCACAAAGGCTTTTCAGGTATCTCA
Found at i:80392077 original size:27 final size:27
Alignment explanation
Indices: 80391704--80392079 Score: 224
Period size: 27 Copynumber: 14.0 Consensus size: 27
80391694 TTTACCTTAT
* *
80391704 AGGGGTATTTCTGTAATTTTACACTA-C
1 AGGGGTATTTCGGTAATTTTACA-AACC
* **
80391731 AAGGGTATTTCGGTAATTTTACAAATT
1 AGGGGTATTTCGGTAATTTTACAAACC
* * *
80391758 GGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACAAACC
* * ** **
80391785 AAGGATATTTCAATAATTTTACAAATT
1 AGGGGTATTTCGGTAATTTTACAAACC
* ** *
80391812 GGGGGTATTTCAATAAATTTACAAA-C
1 AGGGGTATTTCGGTAATTTTACAAACC
* * * * *
80391838 TGTGAGTATTTTGGTAATTTTACATTA-T
1 AG-GGGTATTTCGGTAATTTTACA-AACC
* * **
80391866 AAGGGTATTTCGGTAATTTTATAAATT
1 AGGGGTATTTCGGTAATTTTACAAACC
* * *
80391893 GGGGGCATTTCGGTAATTTTATAAACC
1 AGGGGTATTTCGGTAATTTTACAAACC
*** * ***
80391920 AAATGAATTTTAATAATTTTACAAA-C
1 AGGGGTATTTCGGTAATTTTACAAACC
* * * * * *
80391946 TGGGGATATTTTGTTAATTTCACACTACG
1 AGGGG-TATTTCGGTAATTTTACA-AACC
*
80391975 A-GGGTATTTTGGTAATTTTACAAA-C
1 AGGGGTATTTCGGTAATTTTACAAACC
* * *
80392000 TGGGGTATTTCGGTAAGTTTACAAATC
1 AGGGGTATTTCGGTAATTTTACAAACC
80392027 AGGGGTATTTCGGTAATTTTACAAACC
1 AGGGGTATTTCGGTAATTTTACAAACC
* *
80392054 AGAGGCATTTCGGTAATTTTACAAAC
1 AGGGGTATTTCGGTAATTTTACAAAC
80392080 TGGGGTCATA
Statistics
Matches: 269, Mismatches: 71, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
26 27 0.10
27 237 0.88
28 5 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTTACAAACC
Found at i:80394583 original size:40 final size:40
Alignment explanation
Indices: 80394528--80394789 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
80394518 TATTCGAATG
*
80394528 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
80394568 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
80394608 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
80394648 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80394688 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80394728 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
80394768 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80394790 TACTTGTGAC
Statistics
Matches: 210, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 14 0.07
40 194 0.92
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:80396504 original size:40 final size:40
Alignment explanation
Indices: 80396445--80396652 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
80396435 CAATTGAATG
* * * *
80396445 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
80396485 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
80396525 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
80396565 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
80396605 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
80396645 ATATCCGG
1 ATATCCGG
80396653 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:80396583 original size:80 final size:80
Alignment explanation
Indices: 80396446--80396652 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
80396436 AATTGAATGA
* * ** * * *
80396446 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
80396511 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
80396524 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
80396589 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
80396606 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
80396653 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:80404497 original size:40 final size:40
Alignment explanation
Indices: 80404438--80404645 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
80404428 CAATTGAATG
* * * *
80404438 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
80404478 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
80404518 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
80404558 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
80404598 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
80404638 ATATCCGG
1 ATATCCGG
80404646 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:80404576 original size:80 final size:80
Alignment explanation
Indices: 80404439--80404645 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
80404429 AATTGAATGA
* * ** * * *
80404439 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
80404504 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
80404517 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
80404582 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
80404599 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
80404646 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:80407794 original size:27 final size:26
Alignment explanation
Indices: 80407746--80407805 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
80407736 GCGAGGCTGC
*
80407746 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
80407773 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
80407799 CAGATAT
1 CAGATAT
80407806 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80410928 original size:44 final size:44
Alignment explanation
Indices: 80410850--80410996 Score: 158
Period size: 44 Copynumber: 3.4 Consensus size: 44
80410840 TCCCAAACAG
* * *
80410850 GGTCTTACAC-GAAATCAG-A-TACGATGCTGATGTCCCAGACAT
1 GGTCTTACACAGAAAACAGAAGT-CGATGCTAATGTCCCAGACGT
* ** * * * *
80410892 TGTCTTACACTTAAAATAGAAGTTGATGCTAATGTCCTAGATGT
1 GGTCTTACACAGAAAACAGAAGTCGATGCTAATGTCCCAGACGT
*
80410936 GGTCTTACACAGAAAACAGAAGTCGATGCCAATGTCCCAGACGT
1 GGTCTTACACAGAAAACAGAAGTCGATGCTAATGTCCCAGACGT
80410980 GGTCTTACAC-GAAAACA
1 GGTCTTACACAGAAAACA
80410997 TATATCGGAT
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 9 0.11
43 12 0.14
44 63 0.74
45 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (44 bp):
GGTCTTACACAGAAAACAGAAGTCGATGCTAATGTCCCAGACGT
Found at i:80415582 original size:22 final size:22
Alignment explanation
Indices: 80415556--80415600 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
80415546 AGATCAACAC
*
80415556 AAATAT-AATGGCATACATATCA
1 AAATATCAATAGCAT-CATATCA
*
80415578 AAATATCAATATCATCATATCA
1 AAATATCAATAGCATCATATCA
80415600 A
1 A
80415601 TCATCATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.51, C:0.16, G:0.04, T:0.29
Consensus pattern (22 bp):
AAATATCAATAGCATCATATCA
Found at i:80415589 original size:14 final size:14
Alignment explanation
Indices: 80415572--80415611 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
80415562 AATGGCATAC
*
80415572 ATATCAAAATATCA
1 ATATCATAATATCA
*
80415586 ATATCATCATATCA
1 ATATCATAATATCA
80415600 ATCATCATAATA
1 AT-ATCATAATA
80415612 ATCACAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (14 bp):
ATATCATAATATCA
Found at i:80415844 original size:21 final size:22
Alignment explanation
Indices: 80415814--80415869 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
80415804 CATTGTGGAC
*
80415814 AAACCACCACATATTTGCAG-A
1 AAACGACCACATATTTGCAGAA
* *
80415835 TAACGACCACATATTTGTAGAA
1 AAACGACCACATATTTGCAGAA
*
80415857 AAACTACCACATA
1 AAACGACCACATA
80415870 AGTTCCACAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 17 0.59
22 12 0.41
ACGTcount: A:0.45, C:0.25, G:0.09, T:0.21
Consensus pattern (22 bp):
AAACGACCACATATTTGCAGAA
Found at i:80424414 original size:31 final size:31
Alignment explanation
Indices: 80424377--80424447 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
80424367 TTACTGGGCT
80424377 GAAGCCTTTTCATAAATCATATCACTAGGCC
1 GAAGCCTTTTCATAAATCATATCACTAGGCC
* *
80424408 GAAGCCTTTTCATAAATCATATCATTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTAGGCC
80424439 GAAGCCTTT
1 GAAGCCTTT
80424448 ACTGTAAACG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (31 bp):
GAAGCCTTTTCATAAATCATATCACTAGGCC
Found at i:80424698 original size:25 final size:25
Alignment explanation
Indices: 80424653--80424735 Score: 118
Period size: 24 Copynumber: 3.4 Consensus size: 25
80424643 TTGGTGGCCT
80424653 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
*
80424677 AGCCCTTTTCGATAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
80424702 AG-CCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
80424727 AGCCCTTTT
1 AGCCCTTTT
80424736 GCACTTCCTC
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
23 5 0.09
24 26 0.49
25 16 0.30
26 6 0.11
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:80425597 original size:27 final size:26
Alignment explanation
Indices: 80425536--80425599 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
80425526 GGGCATATTC
80425536 GTCATTTTACCATACAGGGGATTACG
1 GTCATTTTACCATACAGGGGATTACG
* * *
80425562 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAGGGG-ATTACG
*
80425589 GTCTTTTTACC
1 GTCATTTTACC
80425600 TAATAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 18 0.56
27 14 0.44
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (26 bp):
GTCATTTTACCATACAGGGGATTACG
Found at i:80425801 original size:54 final size:54
Alignment explanation
Indices: 80425715--80425908 Score: 185
Period size: 54 Copynumber: 3.6 Consensus size: 54
80425705 TAGAAAGTCA
* * ** * *
80425715 AGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTG
* * * *
80425769 AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACT-
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTG
** * **
80425822 AGGGTA-TTCTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACTG
1 AGGGTATTTC-GGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTG
* ** **
80425876 AAGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTA
80425909 AAACAATAAT
Statistics
Matches: 110, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
52 3 0.03
53 40 0.36
54 65 0.59
55 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTG
Found at i:80425838 original size:80 final size:80
Alignment explanation
Indices: 80425743--80425894 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 80
80425733 TGTAAATCAG
* *
80425743 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAAC-CAAGGGTATTTTA
1 GGGTATTCTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACTCAA-GGTATTTTA
80425807 GCAATTTTACAGACTA
65 GCAATTTTACAGACTA
** * ** *
80425823 GGGTATTCTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACTGAAGGTATTTTAG
1 GGGTATTCTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACTCAAGGTATTTTAG
*
80425888 TAATTTT
66 CAATTTT
80425895 GTAAATCAAG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 60 0.97
81 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (80 bp):
GGGTATTCTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACTCAAGGTATTTTAG
CAATTTTACAGACTA
Found at i:80425881 original size:27 final size:27
Alignment explanation
Indices: 80425743--80425894 Score: 155
Period size: 27 Copynumber: 5.7 Consensus size: 27
80425733 TGTAAATCAG
*
80425743 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACTGA
* **
80425770 GGGTATTTCGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTGA
* * *
80425797 GGGTATTTTAGCAATTTTACAGACT-A
1 GGGTATTTTGGTAATTTTACAAACTGA
* **
80425823 GGGTATTCTGGTAATTTTACTGA-TCGA
1 GGGTATTTTGGTAATTTTACAAACT-GA
**
80425850 GGGTATTTTGGTAATTTTGTAAACTGA
1 GGGTATTTTGGTAATTTTACAAACTGA
* *
80425877 AGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
80425895 GTAAATCAAG
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
25 1 0.01
26 20 0.20
27 80 0.78
28 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTGA
Found at i:80425908 original size:27 final size:27
Alignment explanation
Indices: 80425657--80425908 Score: 131
Period size: 27 Copynumber: 9.3 Consensus size: 27
80425647 ATCTACAAGC
* *
80425657 CAAGGGTATTTCAGT-ATTTTGTTAAAC
1 CAAGGGTATTTTAGTAATTTTG-TAAAT
* *
80425684 CAATGGTATTTCCA-TAATTTT-TAGAAAGT
1 CAAGGGTATTT-TAGTAATTTTGT--AAA-T
*
80425713 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTGTAAAT
* * **
80425740 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
** ** ** *
80425767 TGAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTGTAAAT
* ** *
80425794 CAAGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTAGTAATTTTGTAAAT
* * * * *
80425820 CTAGGGTATTCTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTT-GTAAAT
* *
80425847 CGAGGGTATTTTGGTAATTTTGTAAACT
1 CAAGGGTATTTTAGTAATTTTGTAAA-T
*
80425875 GAA-GGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
80425901 CAAGGGTA
1 CAAGGGTA
80425909 AAACAATAAT
Statistics
Matches: 178, Mismatches: 34, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
26 25 0.14
27 120 0.67
28 15 0.08
29 17 0.10
30 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTGTAAAT
Found at i:80430841 original size:32 final size:30
Alignment explanation
Indices: 80430774--80430834 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
80430764 ATGGGGCAGA
*
80430774 CCGTGTGTCACACACGGCCTAGACACATGC
1 CCGTGTGTCACACACGGCCTAAACACATGC
80430804 CCGTGTGTCACACACGGCCTAAACACATGC
1 CCGTGTGTCACACACGGCCTAAACACATGC
80430834 C
1 C
80430835 TGCGTGTCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.38, G:0.21, T:0.16
Consensus pattern (30 bp):
CCGTGTGTCACACACGGCCTAAACACATGC
Found at i:80430842 original size:30 final size:30
Alignment explanation
Indices: 80430778--80430842 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
80430768 GGCAGACCGT
* *
80430778 GTGTCACACACGGCCTAGACACATGCCCGT
1 GTGTCACACACGGCCTAAACACATGCCCGC
*
80430808 GTGTCACACACGGCCTAAACACATGCCTGC
1 GTGTCACACACGGCCTAAACACATGCCCGC
80430838 GTGTC
1 GTGTC
80430843 TACCCATGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.23, C:0.35, G:0.23, T:0.18
Consensus pattern (30 bp):
GTGTCACACACGGCCTAAACACATGCCCGC
Found at i:80432889 original size:40 final size:40
Alignment explanation
Indices: 80432831--80432994 Score: 222
Period size: 40 Copynumber: 4.1 Consensus size: 40
80432821 TGGGATTTAA
*
80432831 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
*
80432871 CCAGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
80432911 CCGGATATAATC-GCTAGCATAAATGCCTTCGGGTCATAGC
1 CCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
80432951 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGT
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
80432991 CCGG
1 CCGG
80432995 TTATCATCCG
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 102 0.96
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:80439818 original size:30 final size:30
Alignment explanation
Indices: 80439772--80439830 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
80439762 TTTACGAGCC
* *
80439772 TAGGGGCTAAAGTGCAAATATGTGAAAGTT
1 TAGGGGCTAAAATGCAAATATGTAAAAGTT
* *
80439802 TAGGGGTTAAAATGCAAATTTGTAAAAGT
1 TAGGGGCTAAAATGCAAATATGTAAAAGT
80439831 ATGATTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.39, C:0.05, G:0.27, T:0.29
Consensus pattern (30 bp):
TAGGGGCTAAAATGCAAATATGTAAAAGTT
Found at i:80440450 original size:28 final size:28
Alignment explanation
Indices: 80440369--80440450 Score: 66
Period size: 28 Copynumber: 3.1 Consensus size: 28
80440359 GCGAGAACAA
* *
80440369 TGTGTAGTACTATGTGCAGGCTACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTACG
* * **
80440397 TGTTTAAG-AC-AATTTTAGG-T-C-ACG
1 TGTGT-AGTACTAAGTGCAGGCTACTACG
80440421 TGTGTAGTACTAAGTGCAGGCTACTACG
1 TGTGTAGTACTAAGTGCAGGCTACTACG
80440449 TG
1 TG
80440451 CACCAGATTG
Statistics
Matches: 38, Mismatches: 10, Indels: 12
0.63 0.17 0.20
Matches are distributed among these distances:
23 2 0.05
24 8 0.21
25 7 0.18
26 2 0.05
27 6 0.16
28 11 0.29
29 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (28 bp):
TGTGTAGTACTAAGTGCAGGCTACTACG
Found at i:80440680 original size:142 final size:142
Alignment explanation
Indices: 80440424--80440698 Score: 390
Period size: 142 Copynumber: 1.9 Consensus size: 142
80440414 GGTCACGTGT
* * * *
80440424 GTAGTACTAAGTGCAGGCTACTACGTGCACCAGATTGTTAGGTCGCATTTGTGGTACTAAGTGCA
1 GTAGTACTAAGTGCAGGCTACTACGTGCACCAGATTGATAAGTCGCATGTGTAGTACTAAGTGCA
* * ** * *
80440489 GGCTACTATGCGTACTCGATAGTTTTGATCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTA
66 GGCTACTATGCGCACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA
80440554 TCAAATGGTTAG
131 TCAAATGGTTAG
* * * *
80440566 GTAGTACTAAGTGCAGGTTACTATGTGTACCGGATTGATAAGTCGCATGTGTAGTACTAAGTGCA
1 GTAGTACTAAGTGCAGGCTACTACGTGCACCAGATTGATAAGTCGCATGTGTAGTACTAAGTGCA
* *
80440631 GGCTACTATAG-GCACCCGTTAACTTCGATCACGTGTGTAGTATTAAGTGCAGGCTACTACATGT
66 GGCTACTAT-GCGCACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGT
80440695 ATCA
130 ATCA
80440699 GATGAAAAAG
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
142 115 0.99
143 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (142 bp):
GTAGTACTAAGTGCAGGCTACTACGTGCACCAGATTGATAAGTCGCATGTGTAGTACTAAGTGCA
GGCTACTATGCGCACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA
TCAAATGGTTAG
Found at i:80447954 original size:30 final size:30
Alignment explanation
Indices: 80447899--80448088 Score: 246
Period size: 30 Copynumber: 6.5 Consensus size: 30
80447889 ATAATGAATC
80447899 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
80447928 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
80447958 CGCACACTTAGTGCCATGTAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
80447988 CGAACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
80448017 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * * *
80448045 CGTACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
80448075 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80448089 CAATCTTGTC
Statistics
Matches: 142, Mismatches: 13, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
27 2 0.01
28 21 0.15
29 47 0.33
30 71 0.50
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:80454032 original size:46 final size:46
Alignment explanation
Indices: 80453857--80454118 Score: 205
Period size: 46 Copynumber: 5.6 Consensus size: 46
80453847 GGTGCCATGT
* * * * *
80453857 CATGTCCCAGACATGGTCTTACACGAGTTCTAGCGTATCTAT-GTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CCT--CGTCTCAATGGCCGATG
* * * *
80453906 CCATGTCCCAGACATGGTCTTACACT-GACACATCTC-ATAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCCTCGTCTCAATGGCCGATG
* * * * *
80453952 CATGTCCCAGACACGTCTTGCACTGGCTTACGTCTCGA-GGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCCT-CGTCTCAATGGCCGATG
* *
80453998 CATGTCCCAGACATGTCTTATACTAGCACTCGTCTCAAT-GCCAATG
1 CATGTCCCAGACATGTCTTACACTAGC-CTCGTCTCAATGGCCGATG
* *
80454044 CCATGTCCCAGACATGGTCTTACACTAG-CT-GTCACAATGTTGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCCTCGTCTCAATG--GCCGATG
80454092 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
80454119 TCACACAAGT
Statistics
Matches: 176, Mismatches: 24, Indels: 27
0.78 0.11 0.12
Matches are distributed among these distances:
44 9 0.05
45 23 0.13
46 72 0.41
47 30 0.17
48 17 0.10
49 1 0.01
50 24 0.14
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCCTCGTCTCAATGGCCGATG
Found at i:80455923 original size:94 final size:94
Alignment explanation
Indices: 80455762--80455949 Score: 304
Period size: 94 Copynumber: 2.0 Consensus size: 94
80455752 AAGGTGACTG
*
80455762 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
* * *
80455827 GAATTAAATGTCACTTTGTGTGTAGATTT
66 GAATTAAATGGCACTATGTGTGCAGATTT
* * * *
80455856 TATATGCTATTTGAATTAAGTAAATTTCCTTATTATAGTGTGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
80455921 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGGCACTATGTGTGCAGATTT
80455950 GAATGTCGAT
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGGCACTATGTGTGCAGATTT
Found at i:80456010 original size:24 final size:24
Alignment explanation
Indices: 80455978--80456039 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
80455968 GAAAATTTTA
* *
80455978 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
80456002 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
80456026 AGCACTATGTGTGC
1 GGCACTATGTGTGC
80456040 AAATTTGGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 29 0.85
25 5 0.15
ACGTcount: A:0.19, C:0.16, G:0.31, T:0.34
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:80461293 original size:26 final size:27
Alignment explanation
Indices: 80461257--80461317 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
80461247 TGTCAGCTAG
* * *
80461257 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAATTTTTAAGTGTCCGAATGCATGC
80461283 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAATTTTTAAGTGTCCGAATGCATGC
80461310 TAGAATTT
1 T-GAATTT
80461318 AACATGTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 14 0.47
28 6 0.20
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (27 bp):
TGAATTTTTAAGTGTCCGAATGCATGC
Found at i:80462646 original size:48 final size:48
Alignment explanation
Indices: 80462582--80462727 Score: 229
Period size: 48 Copynumber: 3.0 Consensus size: 48
80462572 TGTACAAGAT
*
80462582 ATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
80462630 ATATATATATGTGGTAAAGCCGAAAGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* ** * *
80462678 CTATGCATATGTGGTAAAGCCAAATGGTTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
80462726 AT
1 AT
80462728 GTGTATATAT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:80467566 original size:94 final size:94
Alignment explanation
Indices: 80467404--80467591 Score: 313
Period size: 94 Copynumber: 2.0 Consensus size: 94
80467394 AAGGTGACTG
* *
80467404 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAATTAACATTGGCACTATGTGTGTG
1 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAATTAACATTGGCACTATGTGTGCG
* *
80467469 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGGCACTATGTGTGCAGATTT
* * *
80467498 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAGTGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAATTAACATTGGCACTATGTGTGCG
80467563 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGGCACTATGTGTGCAGATTT
80467592 GAATGTCGAT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 87 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAATTAACATTGGCACTATGTGTGCG
GAATTAAATGGCACTATGTGTGCAGATTT
Found at i:80467652 original size:24 final size:24
Alignment explanation
Indices: 80467620--80467683 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
80467610 GAAAATTTCA
* *
80467620 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
80467644 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
80467668 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
80467684 ATTTGGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:80473902 original size:27 final size:27
Alignment explanation
Indices: 80473872--80474073 Score: 237
Period size: 27 Copynumber: 7.5 Consensus size: 27
80473862 AAAGTACTCC
*
80473872 CGATTTACAGAATTTCCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
80473899 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80473926 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * * *
80473953 TGATTTATAGCATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
80473980 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
80474007 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
80474034 TGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80474061 TGATTTACAGAAT
1 CGATTTACAGAAT
80474074 GTGACAGCCC
Statistics
Matches: 150, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.01
27 146 0.97
28 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:80475822 original size:40 final size:37
Alignment explanation
Indices: 80475753--80475904 Score: 119
Period size: 40 Copynumber: 3.9 Consensus size: 37
80475743 AGCAATTGAA
*
80475753 TGATATCCGGGCTAAGTCTCG-AGGACATTTGTGC-TAG
1 TGATATCCGGGCTAAG-CCCGAAGG-CATTTGTGCATAG
*
80475790 TGACTACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTG
1 TGA-T--ATCCGGGCTAAG-CCCGAAGGCATTTGTGC--ATAG
* *
80475833 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCATTTGTGC-A-TAG
* * * *
80475872 CGATACCCGGGTTAAGTCCCGAAGGCCTTTGTG
1 TGATATCCGGGCTAAG-CCCGAAGGCATTTGTG
80475905 TGGGCTACCA
Statistics
Matches: 96, Mismatches: 10, Indels: 15
0.79 0.08 0.12
Matches are distributed among these distances:
37 3 0.03
38 2 0.02
39 32 0.33
40 50 0.52
41 3 0.03
42 1 0.01
43 5 0.05
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (37 bp):
TGATATCCGGGCTAAGCCCGAAGGCATTTGTGCATAG
Found at i:80475864 original size:39 final size:40
Alignment explanation
Indices: 80475797--80475897 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
80475787 TAGTGACTAC
* *
80475797 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATTGCGAT
* *
80475837 ATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGCGAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATTGCGAT
* * *
80475876 ACCCGGGTTAAGTCCCGAAGGC
1 ATCCGGGCTAAGACCCGAAGGC
80475898 CTTTGTGTGG
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 33 0.61
40 21 0.39
ACGTcount: A:0.25, C:0.24, G:0.31, T:0.21
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATTGCGAT
Found at i:80477992 original size:27 final size:27
Alignment explanation
Indices: 80477346--80477992 Score: 716
Period size: 27 Copynumber: 24.0 Consensus size: 27
80477336 GGGGTGTTAC
80477346 ACAGAATTACCGTTTTACCCTC-AGTTT
1 ACAGAATTACCGTTTTACCCTCGA-TTT
* **
80477373 ATAGAATTACTATTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
80477400 ACAGAATTACCGTTTTACCCTC-AGTTT
1 ACAGAATTACCGTTTTACCCTCGA-TTT
* **
80477427 ACAAAATTACTATTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
* * *
80477454 ATAGAATTACCTTTTTACCCTCAATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
** *
80477481 GTAAAATTACCGTTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
*
80477508 ACAGAATTATCGTTTTACCCTC-AGTTT
1 ACAGAATTACCGTTTTACCCTCGA-TTT
80477535 ACAGAATTACCGTTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
*
80477562 ACAGAATTACTGTTTTACCCTC-AGTTT
1 ACAGAATTACCGTTTTACCCTCGA-TTT
* **
80477589 ACAAAATTACTATTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
*
80477616 ATAGAATTACCGTTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
** * *
80477643 GTAAAATTACCGTTTCACCCTC-AGTTT
1 ACAGAATTACCGTTTTACCCTCGA-TTT
*
80477670 ACAGAATTACTGTTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
* * **
80477697 ATAGAATTACTGTTTTACCCTTAATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
** *
80477724 GTAAAATTACCGTTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
* *
80477751 ACAAAATTACCGTTTTACCCTC-AGGTT
1 ACAGAATTACCGTTTTACCCTCGA-TTT
**
80477778 ACAGAATTACTATTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
*
80477805 ACAGAATTACCATTTTACCCTC-AGTTT
1 ACAGAATTACCGTTTTACCCTCGA-TTT
*
80477832 ACAGAATTACTGTTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
* *
80477859 ACAGAATTATCGTTTTACCCTCAATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
** * ** **
80477886 GTAAAATTACCGTTTTACGATTAATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
* *
80477913 ACAGAATTACAGGTTTACCCTC-AGTTT
1 ACAGAATTACCGTTTTACCCTCGA-TTT
* *
80477940 ACAAAATTATCGTTTTACCCTCGATTT
1 ACAGAATTACCGTTTTACCCTCGATTT
*
80477967 ACAGAATTACCGTTTTACCCTTGATT
1 ACAGAATTACCGTTTTACCCTCGATT
80477993 GTGAAATTAC
Statistics
Matches: 524, Mismatches: 81, Indels: 30
0.83 0.13 0.05
Matches are distributed among these distances:
26 7 0.01
27 509 0.97
28 8 0.02
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
ACAGAATTACCGTTTTACCCTCGATTT
Found at i:80478065 original size:54 final size:54
Alignment explanation
Indices: 80477997--80478192 Score: 268
Period size: 54 Copynumber: 3.6 Consensus size: 54
80477987 TTGATTGTGA
* * *
80477997 AATTACTGAAATACCCCTATAGGGTAGAATTTCCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
80478051 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
80478105 AATTA-TCGAAATACCCTTGTAGGGGAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
80478159 AATTACTGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTATAGGGTAGAATTACC
80478193 ATTTTGCCCC
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 123 0.98
55 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:80478183 original size:27 final size:27
Alignment explanation
Indices: 80477997--80478191 Score: 221
Period size: 27 Copynumber: 7.2 Consensus size: 27
80477987 TTGATTGTGA
*
80477997 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
80478024 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
80478051 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
80478078 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
80478105 AATTA-TCGAAATACCCTTGTAGGGGAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
80478132 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
80478159 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
80478186 AATTAC
1 AATTAC
80478192 CATTTTGCCC
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:80480339 original size:25 final size:25
Alignment explanation
Indices: 80480310--80480357 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80480300 TAATACCATG
* * *
80480310 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
80480335 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
80480358 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:80480426 original size:20 final size:20
Alignment explanation
Indices: 80480401--80480459 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
80480391 TAAATATGGT
80480401 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
80480421 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
*
80480441 ATGAATGATATGCACATGA
1 ATGTATGATATGCACATGA
80480460 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:80480441 original size:11 final size:11
Alignment explanation
Indices: 80480405--80480459 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
80480395 TATGGTATGT
80480405 ATGATATGCAC
1 ATGATATGCAC
* *
80480416 ATGAAATG--T
1 ATGATATGCAC
80480425 ATGATATGCAC
1 ATGATATGCAC
80480436 ATGATATG-A-
1 ATGATATGCAC
80480445 ATGATATGCAC
1 ATGATATGCAC
80480456 ATGA
1 ATGA
80480460 GGTAATCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 15 0.42
10 2 0.06
11 19 0.53
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:80480578 original size:47 final size:48
Alignment explanation
Indices: 80480510--80480627 Score: 163
Period size: 47 Copynumber: 2.5 Consensus size: 48
80480500 GAGGAAGTGA
80480510 AAAAGGG-TTATGCCCCAGTTATCGAAAGGGCTTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGGCCCCAGTTATT
*
80480556 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
*
80480604 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
80480628 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
46 8 0.12
47 35 0.54
48 11 0.17
49 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
Found at i:80480603 original size:24 final size:24
Alignment explanation
Indices: 80480510--80480627 Score: 145
Period size: 24 Copynumber: 5.0 Consensus size: 24
80480500 GAGGAAGTGA
*
80480510 AAAAGGG-TTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
80480533 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
80480556 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
80480580 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
80480604 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
80480628 ATGATAAAGC
Statistics
Matches: 83, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
23 28 0.34
24 44 0.53
25 11 0.13
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:80480856 original size:31 final size:31
Alignment explanation
Indices: 80480818--80480881 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
80480808 CGTTTACAGT
*
80480818 AAAGGCTTCGGCGCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
80480849 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
80480880 AA
1 AA
80480882 TATGAAACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:80480886 original size:38 final size:38
Alignment explanation
Indices: 80480835--80480949 Score: 149
Period size: 45 Copynumber: 2.8 Consensus size: 38
80480825 TCGGCGCAGT
80480835 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
80480873 AATATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATG-AA-AT-----ATGAAAAGGCTTCGGCCCAGTATTATGA
*
80480918 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
80480950 GCATGATTGA
Statistics
Matches: 68, Mismatches: 1, Indels: 15
0.81 0.01 0.18
Matches are distributed among these distances:
38 13 0.19
39 15 0.22
40 2 0.03
43 2 0.03
44 2 0.03
45 34 0.50
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:80480886 original size:45 final size:45
Alignment explanation
Indices: 80480835--80480933 Score: 189
Period size: 45 Copynumber: 2.2 Consensus size: 45
80480825 TCGGCGCAGT
*
80480835 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAATATGA
80480880 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAATATGA
80480925 AATATGAAA
1 AATATGAAA
80480934 AGGGCTACGG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.25
Consensus pattern (45 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAATATGA
Found at i:80481681 original size:26 final size:27
Alignment explanation
Indices: 80481639--80481706 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
80481629 GGGTGTTACA
*
80481639 CTGCCACAAATATCTGT-TCTGGTGGCT
1 CTGCCAC-AATATCTGTATCTGGTGACT
*
80481666 CTGCCACAATATCTGTATTTGGTGACT
1 CTGCCACAATATCTGTATCTGGTGACT
*
80481693 CTGTCACAATATCT
1 CTGCCACAATATCT
80481707 ATTGACCGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 9 0.24
27 28 0.76
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
CTGCCACAATATCTGTATCTGGTGACT
Found at i:80481829 original size:22 final size:22
Alignment explanation
Indices: 80481797--80481855 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
80481787 CCCGTTATTA
*
80481797 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
80481819 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
80481841 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
80481856 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:80482042 original size:27 final size:27
Alignment explanation
Indices: 80482020--80482086 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
80482010 TAGGTGGGTT
*
80482020 TGCCACATTATCTGAT-TCTGGTGGCTC
1 TGCCACAATATCT-ATATCTGGTGGCTC
*
80482047 TGCCACAATATCTATATCTGGTGACTC
1 TGCCACAATATCTATATCTGGTGGCTC
* *
80482074 TGTCACGATATCT
1 TGCCACAATATCT
80482087 GTTCTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTATATCTGGTGGCTC
Found at i:80482247 original size:6 final size:6
Alignment explanation
Indices: 80482236--80482282 Score: 69
Period size: 6 Copynumber: 7.8 Consensus size: 6
80482226 TTGTCACGTA
*
80482236 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
80482283 CATTTTTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
5 2 0.05
6 33 0.89
7 2 0.05
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (6 bp):
ATTCTG
Found at i:80488295 original size:68 final size:68
Alignment explanation
Indices: 80488206--80488363 Score: 298
Period size: 68 Copynumber: 2.3 Consensus size: 68
80488196 TTCACTTGGA
* *
80488206 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
80488271 CGT
66 CGT
80488274 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
80488339 CGT
66 CGT
80488342 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
80488364 TATATAGTAT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:80490785 original size:27 final size:27
Alignment explanation
Indices: 80490755--80491218 Score: 520
Period size: 27 Copynumber: 17.2 Consensus size: 27
80490745 AAAGCACTCC
80490755 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80490782 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
80490809 CCATTTTTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
80490836 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * * **
80490863 CGATTTTTAAAATTACAGTTTTACAGT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
80490890 CAATTTATAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
80490917 CGATTTTTAAAATTACCGTTTTACACT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80490944 CAATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80490971 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
80490998 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
80491025 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80491052 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
80491079 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** ** *
80491106 TAATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
80491133 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
80491160 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
80491187 CGATTTACATAATTACCGTTTTATCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80491214 TGATT
1 CGATT
80491219 GTGAAATTAC
Statistics
Matches: 369, Mismatches: 62, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.01
27 363 0.98
28 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:80491261 original size:27 final size:27
Alignment explanation
Indices: 80491231--80491418 Score: 180
Period size: 27 Copynumber: 7.0 Consensus size: 27
80491221 GAAATTACTA
***
80491231 AAATACCCCTGTAGGGTAGAATTTTTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
80491258 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
80491285 AAATACCCTTATAGGATAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
80491312 AAATACCCCTGTATGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
80491339 AAATACCCTTGTAGGGCAGAAATACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
80491366 AAATACCTCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
80491393 AGATACCCTTGT-GGCGTAAAATTACC
1 AAATACCCCTGTAGG-GTAGAATTACC
80491419 ATTTTGCCCC
Statistics
Matches: 130, Mismatches: 30, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
26 2 0.02
27 128 0.98
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:80491289 original size:54 final size:54
Alignment explanation
Indices: 80491223--80491419 Score: 202
Period size: 54 Copynumber: 3.6 Consensus size: 54
80491213 TTGATTGTGA
* * ****
80491223 AATTACTAAAATACCCCTGTAGGGTAGAATTTTTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * * *
80491277 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * * *
80491331 AATTA-TCGAAATACCCTTGTAGGGCAGAAATACCAAAATACCTCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* *
80491385 AATTA-TCGAGATACCCTTGT-GGCGTAAAATTACCA
1 AATTACT-GAAATACCCTTGTAGG-GTAGAATTACCA
80491420 TTTTGCCCCT
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 3 0.02
54 118 0.98
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
Found at i:80491400 original size:81 final size:81
Alignment explanation
Indices: 80491223--80491389 Score: 210
Period size: 81 Copynumber: 2.1 Consensus size: 81
80491213 TTGATTGTGA
* * * * * **
80491223 AATTACTAAAATACCCCTGTAGGGTAGAATTTTTGAAATACCCCTATAGGGTAGAATTACTGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGCAGAAATACCAAAA
80491288 TACCCTTATAGGATAG
66 TACCCTTATAGGATAG
* * *
80491304 AATTACCAAAATACCCCTGTATGGTAGAATTATCGAAATACCCTTGTAGGGCAGAAATACCAAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGCAGAAATACCAAAA
* *
80491369 TA-CCTCTGTAGGGTAG
66 TACCCT-TATAGGATAG
80491385 AATTA
1 AATTA
80491390 TCGAGATACC
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 3 0.04
81 70 0.96
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGCAGAAATACCAAAA
TACCCTTATAGGATAG
Found at i:80491655 original size:27 final size:26
Alignment explanation
Indices: 80491617--80491699 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
80491607 CGGAGGAAGC
*
80491617 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
80491644 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
80491670 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
80491697 GTT
1 GTT
80491700 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:80492029 original size:27 final size:27
Alignment explanation
Indices: 80492007--80492080 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
80491997 TAGGTGGGTT
*
80492007 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
80492034 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
80492061 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
80492081 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:80492206 original size:6 final size:6
Alignment explanation
Indices: 80492197--80492437 Score: 212
Period size: 6 Copynumber: 39.8 Consensus size: 6
80492187 TTGCATTCAC
* * *
80492197 ATTCTG ATTCTG ATTCTG -TCACGTA ATTTTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
80492245 ATTACTA ATACTG ATTCTA ATTCTG ATTCTG -TTACTC ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* *
80492294 ATTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
* * *
80492342 ATTCTG ATTCT- ATCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
80492391 ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
80492438 CATTTTGGTT
Statistics
Matches: 193, Mismatches: 22, Indels: 40
0.76 0.09 0.16
Matches are distributed among these distances:
5 17 0.09
6 159 0.82
7 13 0.07
8 4 0.02
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:80492458 original size:30 final size:30
Alignment explanation
Indices: 80492197--80492437 Score: 292
Period size: 30 Copynumber: 8.4 Consensus size: 30
80492187 TTGCATTCAC
* *
80492197 ATTCTGATTCTGATTCTGTCACGTAATTTTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
* *
80492228 ATTCTGATTCTGATTCTATTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
80492258 ATTCTAATTCTGATTCTGTTAC----TC--
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
80492282 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
80492312 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
80492342 ATTCTGATTCT-A-TC----ACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
80492367 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
80492397 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
80492427 ATTCTGATTCT
1 ATTCTGATTCT
80492438 CATTTTGGTT
Statistics
Matches: 182, Mismatches: 13, Indels: 31
0.81 0.06 0.14
Matches are distributed among these distances:
24 22 0.12
25 19 0.10
26 2 0.01
27 2 0.01
28 3 0.02
29 2 0.01
30 110 0.60
31 22 0.12
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:80494054 original size:50 final size:50
Alignment explanation
Indices: 80493979--80494079 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
80493969 CGGGAAGCTA
80493979 ACATAAGAGTGGATGGGAAGCTGGCTTTAAATAGAGAGAACCATGAGGAG
1 ACATAAGAGTGGATGGGAAGCTGGCTTTAAATAGAGAGAACCATGAGGAG
80494029 ACATAAGAGTGGATGGGAAGCTGGCTTTAAATAGAGAGAACCATGAGGAG
1 ACATAAGAGTGGATGGGAAGCTGGCTTTAAATAGAGAGAACCATGAGGAG
80494079 A
1 A
80494080 GTAAAGGTAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.39, C:0.10, G:0.34, T:0.18
Consensus pattern (50 bp):
ACATAAGAGTGGATGGGAAGCTGGCTTTAAATAGAGAGAACCATGAGGAG
Found at i:80494568 original size:53 final size:53
Alignment explanation
Indices: 80494502--80494862 Score: 426
Period size: 53 Copynumber: 6.8 Consensus size: 53
80494492 CGATTTACAG
* *
80494502 AATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTAACCTCAATTTTTAA
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTACCCTCAATTTTTAA
* * *
80494555 AATTACCGTTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCGA-TTTTAA
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCG-TTTACCCTCAATTTTTAA
* * * *
80494608 AATTACCATTTTACCCTCGATTTATAGAATTACCTTTTACCCTCGA-TTTTAA
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTACCCTCAATTTTTAA
* * ** *
80494660 AATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACCGTTTTACCCTCGATTTACAGAATTACC-GTTTACCCTCAATTTTTAA
** * *
80494714 AATTACTATTTTACCCTC-ATTTACA-AATTACCGTTTTACCCTCGATTTGT-A
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCG-TTTACCCTCAATTTTTAA
* * * **
80494765 AATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAA
1 AATTACCGTTTTACCCTCGATTTACAGAATTAC-CGTTTACCCTCAATTTTTAA
*
80494819 AATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCG-TTTACCCT
80494863 TGATTGTGAA
Statistics
Matches: 267, Mismatches: 32, Indels: 17
0.84 0.10 0.05
Matches are distributed among these distances:
51 15 0.06
52 75 0.28
53 108 0.40
54 69 0.26
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (53 bp):
AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTACCCTCAATTTTTAA
Found at i:80494699 original size:105 final size:105
Alignment explanation
Indices: 80494502--80494877 Score: 483
Period size: 105 Copynumber: 3.6 Consensus size: 105
80494492 CGATTTACAG
* * * *
80494502 AATTACCGTTTTACCCTCGATTTATAGAATTACCG-TTTAACCTCAATTTTTAAAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTTAAAATTACCGTTT
* *
80494566 TACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTTAA
65 TACCCTCGATTTACAGAATTACCGTTTTACCCTC-ATTTTAA
*
80494608 AATTACCATTTTACCCTCGATTTATAGAATTACC-TTTTACCCTCGATTTTAAAATTACCGTTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTTAAAATTACCGTTTT
* *
80494672 ACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACA
66 ACCCTCGATTTACAGAATTACCGTTTTACCCTCATTTTA-A
*
80494713 GAATTACTATTTTACCCTC-ATTTACA-AATTACCGTTTTACCCTCGATTTGT-AAATTACCGTT
1 -AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT-TAAAATTACCGTT
* * * *
80494775 TTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAA
64 TTACCCTCGATTTACAGAATTACCGTTTTACCCTCA-TTT-TAA
* * * * *
80494819 AATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTGTGAAATTAC
1 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTTAAAATTAC
80494878 TGAAATACCC
Statistics
Matches: 240, Mismatches: 20, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
104 12 0.05
105 128 0.53
106 71 0.30
107 29 0.12
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (105 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTTAAAATTACCGTTTT
ACCCTCGATTTACAGAATTACCGTTTTACCCTCATTTTAA
Found at i:80494804 original size:27 final size:27
Alignment explanation
Indices: 80494490--80494867 Score: 454
Period size: 27 Copynumber: 14.3 Consensus size: 27
80494480 CCAAAGTACT
80494490 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
80494517 CTCGATTTATAGAATTACCG-TTTAAC
1 CTCGATTTACAGAATTACCGTTTTACC
* ** *
80494543 CTCAATTTTTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
80494570 CTCGATTTATAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
80494597 CTCGATTTTA-A-AATTACCATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
80494623 CTCGATTTATAGAATTACC-TTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
80494649 CTCGATTTTA-A-AATTACCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
80494675 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
80494702 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
80494729 CTC-ATTTACA-AATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
80494754 CTCGATTTGTA-AATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
80494780 CTTGATTTACAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
80494807 CTC-AGTTTACAAAATTATCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
80494834 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
80494861 CTTGATT
1 CTCGATT
80494868 GTGAAATTAC
Statistics
Matches: 307, Mismatches: 31, Indels: 26
0.84 0.09 0.07
Matches are distributed among these distances:
25 31 0.10
26 103 0.34
27 168 0.55
28 5 0.02
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:80494944 original size:27 final size:27
Alignment explanation
Indices: 80494872--80495064 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
80494862 TTGATTGTGA
*
80494872 AATTACTGAAATACCC-TGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80494898 AATT-TCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80494924 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
80494951 AATTACCAAAATACCC-TGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
80494977 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
80495004 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80495031 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
80495058 AATTACC
1 AATTACC
80495065 ATTTTGCCCC
Statistics
Matches: 143, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
25 9 0.06
26 39 0.27
27 95 0.66
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:80494977 original size:53 final size:54
Alignment explanation
Indices: 80494872--80495064 Score: 259
Period size: 53 Copynumber: 3.6 Consensus size: 54
80494862 TTGATTGTGA
* *
80494872 AATTACTGAAATACCC-TGTAGGGTAGAATT-TCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
80494924 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATA-CCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
80494977 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
80495031 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
80495065 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
52 17 0.14
53 58 0.48
54 47 0.39
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:80495017 original size:80 final size:80
Alignment explanation
Indices: 80494880--80495062 Score: 251
Period size: 80 Copynumber: 2.3 Consensus size: 80
80494870 GAAATTACTG
* * *
80494880 AAATACCCTGTAGGGTAGAATT-TCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTAT
1 AAATACCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTAT
80494944 AGGATAGAATTACCA
66 AGGATAGAATTACCA
* * *
80494959 AAATACCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGT
1 AAATACCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTAT
* *
80495024 AGGGTAGAATTACCG
66 AGGATAGAATTACCA
* * *
80495039 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCC-TGTAGGGTAGAATTA
80495063 CCATTTTGCC
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
79 22 0.24
80 56 0.62
81 13 0.14
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (80 bp):
AAATACCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTAT
AGGATAGAATTACCA
Found at i:80495301 original size:27 final size:26
Alignment explanation
Indices: 80495263--80495345 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
80495253 CGGAGGAAGC
*
80495263 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
80495290 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
80495316 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
80495343 GTT
1 GTT
80495346 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:80495465 original size:22 final size:22
Alignment explanation
Indices: 80495433--80495491 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
80495423 CCCGTTATTA
*
80495433 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
80495455 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
80495477 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
80495492 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:80495677 original size:27 final size:27
Alignment explanation
Indices: 80495655--80495728 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
80495645 TAGGTGGGTT
*
80495655 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
80495682 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
80495709 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
80495729 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:80495853 original size:6 final size:6
Alignment explanation
Indices: 80495844--80496062 Score: 242
Period size: 6 Copynumber: 36.8 Consensus size: 6
80495834 TTGCATTCAC
* *
80495844 ATTCTG ATTCTG ATTCTG -TCACGTA ATT-TG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
*
80495891 ATTACTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
* *
80495940 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT- A-CCTA
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
80495986 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
80496034 ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
80496063 CATTTTGGTT
Statistics
Matches: 185, Mismatches: 10, Indels: 36
0.80 0.04 0.16
Matches are distributed among these distances:
4 2 0.01
5 19 0.10
6 151 0.82
7 11 0.06
8 2 0.01
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:80496083 original size:30 final size:30
Alignment explanation
Indices: 80495844--80496062 Score: 267
Period size: 30 Copynumber: 7.4 Consensus size: 30
80495834 TTGCATTCAC
*
80495844 ATTCTGATTCTGATTCTGTCACGTAATT-TG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
80495874 ATTCTGATTCTGATTCTATTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
80495904 ATTCTGATTCTGATTCTGATT-CTGATTCTG
1 ATTCTGATTCTGATTCTG-TTACTAATTCTG
*
80495934 -TTACTGATTCTGATTCTGATT-CT-GTTACTG
1 ATT-CTGATTCTGATTCTG-TTACTAATT-CTG
80495964 ATTCTGATTCTGATTC---TACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
80495992 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
80496022 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
80496052 ATTCTGATTCT
1 ATTCTGATTCT
80496063 CATTTTGGTT
Statistics
Matches: 169, Mismatches: 7, Indels: 26
0.84 0.03 0.13
Matches are distributed among these distances:
26 1 0.01
28 21 0.12
29 12 0.07
30 128 0.76
31 7 0.04
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:80497660 original size:30 final size:30
Alignment explanation
Indices: 80497626--80497687 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
80497616 AGTGGATGGA
80497626 AGCTGGCTTTAAATAGAGAGAACCATGAGG
1 AGCTGGCTTTAAATAGAGAGAACCATGAGG
80497656 AGCTGGCTTTAAATAGAGAGAACCATGAGG
1 AGCTGGCTTTAAATAGAGAGAACCATGAGG
80497686 AG
1 AG
80497688 AGTAAAGGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.13, G:0.31, T:0.19
Consensus pattern (30 bp):
AGCTGGCTTTAAATAGAGAGAACCATGAGG
Found at i:80498201 original size:26 final size:27
Alignment explanation
Indices: 80498105--80498473 Score: 493
Period size: 27 Copynumber: 14.2 Consensus size: 27
80498095 CAAAGTACTC
80498105 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80498132 CGATTTATAGAATTACCG-TTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
80498157 C-ATTTTA-AGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
80498183 CGATTTATAGAATTA-CGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
80498209 CGATTTA-A-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80498234 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
80498261 CGATTTACAGAATTA-CGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
80498287 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80498314 C-AGTTTACAGAATTA-CTTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
80498340 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80498366 CGATTT---G-TTTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
80498389 TGATTTACAGAATTA-TGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
80498415 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
80498442 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80498469 TGATT
1 CGATT
80498474 GTGAAATTAC
Statistics
Matches: 306, Mismatches: 16, Indels: 40
0.85 0.04 0.11
Matches are distributed among these distances:
23 20 0.07
24 16 0.05
25 37 0.12
26 112 0.37
27 120 0.39
28 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:80498378 original size:155 final size:156
Alignment explanation
Indices: 80498105--80498468 Score: 526
Period size: 155 Copynumber: 2.3 Consensus size: 156
80498095 CAAAGTACTC
* *
80498105 CGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCG-TTTA-CCTCATTTTAAGAA
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTAAGAA
*
80498168 TTACCGTTTTACCCTCGATTTATAGAATTACGTTTTACCCTCGATTTAAAATTACCGTTTTACCC
66 TTACCGTTTTACCCTCGATTTACAGAATTACGTTTTACCCTCGATTT-AAATTACCGTTTTACCC
* *
80498233 TCGATTTATAGAATTACCGTTTTACCCT
130 TCGATTTACAGAATTA-CGGTTTACCCT
80498261 CGATTTACAGAATTA-CGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGA
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTA-AGA
* **
80498325 ATTA-CTTTTTACCCTCGATTTACA-AATTACCGTTTTACCCTCGATTT-GTTTACCGTTTTACC
65 ATTACCGTTTTACCCTCGATTTACAGAATTA-CGTTTTACCCTCGATTTAAATTACCGTTTTACC
* *
80498387 CTTGATTTACAGAATTATGGTTTACCCT
129 CTCGATTTACAGAATTACGGTTTACCCT
* *
80498415 C-AGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
80498469 TGATTGTGAA
Statistics
Matches: 191, Mismatches: 11, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
153 1 0.01
154 21 0.11
155 94 0.49
156 24 0.13
157 44 0.23
158 7 0.04
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.40
Consensus pattern (156 bp):
CGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTAAGAA
TTACCGTTTTACCCTCGATTTACAGAATTACGTTTTACCCTCGATTTAAATTACCGTTTTACCCT
CGATTTACAGAATTACGGTTTACCCT
Found at i:80498494 original size:53 final size:52
Alignment explanation
Indices: 80498105--80498483 Score: 449
Period size: 53 Copynumber: 7.3 Consensus size: 52
80498095 CAAAGTACTC
*
80498105 CGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCG-TTTA-CCT
1 CGATTTA-A-AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
*
80498157 C-ATTTTAAGAATTACCGTTTTACCCTCGATTTATAGAATTA-CGTTTTACCCT
1 CGA-TTTAA-AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
*
80498209 CGATTTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
1 CGATTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
80498261 CGATTTACAGAATTA-CGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
1 CGATTTA-A-AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
*
80498314 C-AGTTTACAGAATTA-CTTTTTACCCTCGATTTACA-AATTACCGTTTTACCCT
1 CGA-TTTA-A-AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
** * * *
80498366 CGATTT--GTTTACCGTTTTACCCTTGATTTACAGAATTA-TGGTTTACCCT
1 CGATTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
*
80498415 C-AGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
1 CGA-TTT--AAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
* *
80498469 TGATTGTGAAATTAC
1 CGATT-TAAAATTAC
80498484 TGAAATACCC
Statistics
Matches: 291, Mismatches: 17, Indels: 37
0.84 0.05 0.11
Matches are distributed among these distances:
48 4 0.01
49 31 0.11
50 7 0.02
51 71 0.24
52 54 0.19
53 106 0.36
54 16 0.05
55 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.40
Consensus pattern (52 bp):
CGATTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
Found at i:80498550 original size:27 final size:27
Alignment explanation
Indices: 80498478--80498670 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
80498468 TTGATTGTGA
*
80498478 AATTACTGAAATACCC-TGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80498504 AATT-TCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80498530 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
80498557 AATTACCAAAATACCC-TGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
80498583 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
80498610 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80498637 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
80498664 AATTACC
1 AATTACC
80498671 ATTTTGCCCC
Statistics
Matches: 143, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
25 9 0.06
26 39 0.27
27 95 0.66
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:80498583 original size:53 final size:54
Alignment explanation
Indices: 80498478--80498670 Score: 259
Period size: 53 Copynumber: 3.6 Consensus size: 54
80498468 TTGATTGTGA
* *
80498478 AATTACTGAAATACCC-TGTAGGGTAGAATT-TCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
80498530 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATA-CCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
80498583 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
80498637 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
80498671 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
52 17 0.14
53 58 0.48
54 47 0.39
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:80498623 original size:80 final size:80
Alignment explanation
Indices: 80498486--80498668 Score: 251
Period size: 80 Copynumber: 2.3 Consensus size: 80
80498476 GAAATTACTG
* * *
80498486 AAATACCCTGTAGGGTAGAATT-TCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTAT
1 AAATACCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTAT
80498550 AGGATAGAATTACCA
66 AGGATAGAATTACCA
* * *
80498565 AAATACCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGT
1 AAATACCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTAT
* *
80498630 AGGGTAGAATTACCG
66 AGGATAGAATTACCA
* * *
80498645 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCC-TGTAGGGTAGAATTA
80498669 CCATTTTGCC
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
79 22 0.24
80 56 0.62
81 13 0.14
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (80 bp):
AAATACCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTAT
AGGATAGAATTACCA
Found at i:80498907 original size:27 final size:26
Alignment explanation
Indices: 80498869--80498951 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
80498859 CGGAGGAAGC
*
80498869 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
80498896 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
80498922 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
80498949 GTT
1 GTT
80498952 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:80499071 original size:22 final size:22
Alignment explanation
Indices: 80499039--80499097 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
80499029 CCCGTTATTA
*
80499039 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
80499061 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
80499083 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
80499098 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:80499284 original size:27 final size:27
Alignment explanation
Indices: 80499262--80499335 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
80499252 TAGGTGGGTT
*
80499262 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
80499289 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
80499316 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
80499336 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:80499457 original size:6 final size:6
Alignment explanation
Indices: 80499448--80499665 Score: 268
Period size: 6 Copynumber: 35.8 Consensus size: 6
80499438 TTGCATTCAC
* *
80499448 ATTCTG ATTCTG ATTCTG -TCACTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
80499496 -TTCTG TTACTTACTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG --A-TT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
80499547 CATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TACTG ATTCTG
1 -ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
80499595 ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG
80499643 -TTACTG ATTCTG ATTCTG ATTCT
1 ATT-CTG ATTCTG ATTCTG ATTCT
80499666 CATTTTGGTT
Statistics
Matches: 187, Mismatches: 10, Indels: 30
0.82 0.04 0.13
Matches are distributed among these distances:
5 15 0.08
6 154 0.82
7 12 0.06
8 2 0.01
9 2 0.01
10 2 0.01
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:80501265 original size:50 final size:50
Alignment explanation
Indices: 80501206--80501306 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
80501196 CGGGAAGCTA
80501206 ACATAAGAGTGGATGGGAAGCTGGCTTTAAATAGAGAGAACCATGAGGAG
1 ACATAAGAGTGGATGGGAAGCTGGCTTTAAATAGAGAGAACCATGAGGAG
80501256 ACATAAGAGTGGATGGGAAGCTGGCTTTAAATAGAGAGAACCATGAGGAG
1 ACATAAGAGTGGATGGGAAGCTGGCTTTAAATAGAGAGAACCATGAGGAG
80501306 A
1 A
80501307 GTAAAGGTAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.39, C:0.10, G:0.34, T:0.18
Consensus pattern (50 bp):
ACATAAGAGTGGATGGGAAGCTGGCTTTAAATAGAGAGAACCATGAGGAG
Done.