Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 259 of 433
Found at i:80501739 original size:27 final size:27
Alignment explanation
Indices: 80501709--80501769 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
80501699 CGACTTGTAA
*
80501709 AATTACCAAAGTACTCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
**** *
80501736 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTACAG
80501763 AATTACC
1 AATTACC
80501770 GTTTAACCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.34
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:80501770 original size:27 final size:27
Alignment explanation
Indices: 80501724--80502108 Score: 405
Period size: 27 Copynumber: 14.3 Consensus size: 27
80501714 CCAAAGTACT
80501724 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
80501751 CTCGATTTATAGAATTACCGTTTAACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * ** *
80501778 TTCAATTTTTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
80501805 CTTGATTTATAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
80501832 CTCGATTTTTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
80501859 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
80501886 CTCGATTTTTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
80501913 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
80501940 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
80501967 CTCAATTTACAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
80501994 CTCGATTTGTACAATAACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* ** *
80502021 CTTGATTTACAGAATTATTGGTTTA-C
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
80502047 CTTTAGTTTACAAAATTATCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
80502075 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
80502102 CTTGATT
1 CTCGATT
80502109 GTGAAATTAC
Statistics
Matches: 301, Mismatches: 53, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
26 6 0.02
27 290 0.96
28 5 0.02
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.42
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:80502148 original size:27 final size:27
Alignment explanation
Indices: 80502113--80502308 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
80502103 TTGATTGTGA
* *
80502113 AATTACTGAAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
80502140 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80502167 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
80502194 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
80502221 AATTATCGAAATACCCTTGTAGGGCAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
80502248 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80502275 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
80502302 AATTACC
1 AATTACC
80502309 ATTTTGCCCC
Statistics
Matches: 147, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:80502545 original size:27 final size:26
Alignment explanation
Indices: 80502507--80502589 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
80502497 CGGAGGGAGC
*
80502507 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
80502534 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
80502560 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
80502587 GTT
1 GTT
80502590 GACCGATCCA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:80502921 original size:27 final size:27
Alignment explanation
Indices: 80502899--80502967 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
80502889 TAGGTGGGTT
*
80502899 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
80502926 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
80502953 TGTCACGATATCTGT
1 TGCCACAATATCTGT
80502968 TCTAGCAGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:80503099 original size:6 final size:6
Alignment explanation
Indices: 80503090--80503380 Score: 283
Period size: 6 Copynumber: 47.8 Consensus size: 6
80503080 TTGCATTCAC
* *
80503090 ATTCTG ATTCTG ATTCTG -TCACATA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
80503139 GTTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
* *
80503187 ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
80503236 ATTCTG GTTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT- ATCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
80503285 ATTCTG ATTCTG ATTCTG ATTCTG -TCACATA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG
* * *
80503334 ATTCTG GTTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
80503381 CATTTTGGTT
Statistics
Matches: 238, Mismatches: 27, Indels: 40
0.78 0.09 0.13
Matches are distributed among these distances:
5 13 0.05
6 206 0.87
7 14 0.06
8 5 0.02
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:80503215 original size:79 final size:78
Alignment explanation
Indices: 80503127--80503333 Score: 299
Period size: 79 Copynumber: 2.6 Consensus size: 78
80503117 TCTGATTCTG
*
80503127 ATTCTGATTCTGGTTCTG-TTACTAATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATTC
1 ATTCTGATTCTGATTCTGATT-CT-ATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATTC
* *
80503191 TGATTCTGTCACGTA
64 TGATTCTATCACCTA
* *
80503206 ATTCTGATTCTGATTCTGATTCTGATTCTGATTCTGGTTCTGATTCTGTTACTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGATTCT-ATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCT
80503271 GATTCTATCACCTA
65 GATTCTATCACCTA
* *
80503285 ATTCTGATTCTGATTCTGATTCTGTCACATAATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGATTCTAT-AC-TGATTCTGATTCTGATTCTG
80503334 ATTCTGGTTC
Statistics
Matches: 115, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 94 0.82
80 20 0.17
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.47
Consensus pattern (78 bp):
ATTCTGATTCTGATTCTGATTCTATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTG
ATTCTATCACCTA
Found at i:80503368 original size:79 final size:78
Alignment explanation
Indices: 80503116--80503380 Score: 255
Period size: 79 Copynumber: 3.4 Consensus size: 78
80503106 TGTCACATAA
* *
80503116 TTCTGATTCTGAT-TCTGATTCTGGTTCTG----T-TACTAATACTGATTCTGATTCTGATTCTG
1 TTCTGATTCTGATCTCTGATTCTGATTCTGATTCTGTACTAATTCTGATTCTGATTCTGATTCTG
80503175 TTACTGATTCTGA
66 TTACTGATTCTGA
* * * * *
80503188 TTCTGATTCTG-TCACGTAATTCTGATTCTGATTCTGATTCTGATTCTGATTCTGGTTCTGATTC
1 TTCTGATTCTGATCTC-TGATTCTGATTCTGATTCTG-TACTAATTCTGATTCTGATTCTGATTC
80503252 TGTTACTGATTCTGA
64 TGTTACTGATTCTGA
80503267 TTCTGATTCT-ATCACCTAATTCTGATTCTGATTCTGATTCTGTCACATAATTCTGATTCTGATT
1 TTCTGATTCTGAT---C----TCTGATTCTGATTCTGATTCTGT-AC-TAATTCTGATTCTGATT
*
80503331 CTGATTCTGGTT-CTG-TTACTAA
57 CTGATTCT-GTTACTGATT-CTGA
*
80503353 TACTGATTCTGAT-TCTGATTCTGATTCT
1 TTCTGATTCTGATCTCTGATTCTGATTCT
80503381 CATTTTGGTT
Statistics
Matches: 158, Mismatches: 14, Indels: 35
0.76 0.07 0.17
Matches are distributed among these distances:
71 1 0.01
72 12 0.08
73 12 0.08
77 1 0.01
79 64 0.41
82 1 0.01
84 1 0.01
85 22 0.14
86 39 0.25
87 5 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (78 bp):
TTCTGATTCTGATCTCTGATTCTGATTCTGATTCTGTACTAATTCTGATTCTGATTCTGATTCTG
TTACTGATTCTGA
Found at i:80505016 original size:71 final size:71
Alignment explanation
Indices: 80504928--80505091 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
80504918 CGAGATGTAT
*
80504928 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTAA
80504993 AGGACA
66 AGGACA
80504999 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTAA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTAA
80505064 AGGACA
66 AGGACA
80505070 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80505092 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTAA
AGGACA
Found at i:80514757 original size:28 final size:27
Alignment explanation
Indices: 80514721--80514826 Score: 103
Period size: 28 Copynumber: 3.9 Consensus size: 27
80514711 AAAAGTACTC
80514721 CGATTTACAGAATTACCATTTTTACCCT
1 CGATTTACAGAATTACC-TTTTTACCCT
* * *
80514749 TGATTTACAGAATTA-TTGTTTTATACCT
1 CGATTTACAGAATTACCT-TTTTA-CCCT
* *
80514777 CGATTT-TA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCTTTTTACCCT
80514802 CGATTTACAGAATTA-CTGTTTTACC
1 CGATTTACAGAATTACCT-TTTTACC
80514827 NGCCCGAGTG
Statistics
Matches: 62, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
25 9 0.15
26 13 0.21
27 18 0.29
28 22 0.35
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.43
Consensus pattern (27 bp):
CGATTTACAGAATTACCTTTTTACCCT
Found at i:80519823 original size:68 final size:70
Alignment explanation
Indices: 80519751--80519948 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
80519741 ACACCCTGTA
* * * *
80519751 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
80519813 ATAAAT
65 ATAAAT
*
80519819 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
80519884 ATAAAT
65 ATAAAT
*
80519890 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
80519949 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:80519862 original size:41 final size:41
Alignment explanation
Indices: 80519817--80519934 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
80519807 TGAAAGATAA
80519817 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
80519858 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
80519888 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
80519929 ATGTAG
1 ATGTAG
80519935 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:80519874 original size:71 final size:71
Alignment explanation
Indices: 80519785--80519948 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80519775 GAGATGTATC
80519785 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80519850 AGGACA
66 AGGACA
80519856 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80519921 AGGACA
66 AGGACA
80519927 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80519949 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:80525473 original size:46 final size:46
Alignment explanation
Indices: 80525423--80525597 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80525413 TGGTTGAGCA
80525423 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80525469 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80525514 CATCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80525561 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80525598 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 6 0.05
46 84 0.76
47 7 0.06
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80525585 original size:92 final size:93
Alignment explanation
Indices: 80525420--80525589 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
80525410 GGATGGTTGA
* *
80525420 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80525485 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80525513 GCATCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80525577 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80525590 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 67 0.91
93 7 0.09
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80527329 original size:29 final size:29
Alignment explanation
Indices: 80527290--80527369 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
80527280 CTTAATAATC
*
80527290 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
80527320 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
80527349 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
80527370 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:80529262 original size:15 final size:15
Alignment explanation
Indices: 80529244--80529281 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
80529234 TTTTTTATGT
80529244 TGGATTTCT-ATATTC
1 TGGATTTCTCA-ATTC
*
80529259 TGGATTTCTCAATTG
1 TGGATTTCTCAATTC
80529274 TGGATTTC
1 TGGATTTC
80529282 CTTATCTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 20 0.95
16 1 0.05
ACGTcount: A:0.18, C:0.13, G:0.18, T:0.50
Consensus pattern (15 bp):
TGGATTTCTCAATTC
Found at i:80532062 original size:52 final size:50
Alignment explanation
Indices: 80531966--80532097 Score: 165
Period size: 52 Copynumber: 2.6 Consensus size: 50
80531956 CCATTGAGAA
* * **
80531966 CACATGTGTAGTACTATGTGCAGCCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAAAATGG--TTAGGT
* * *
80532018 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGATGGTTAGGT
1 CACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAAAATGGTTAGGT
* *
80532068 CTCATATGTAGTACTATGTGCAGGCTACTA
1 CACATGTGTAGTACTATGTGCAGGCTACTA
80532098 TGCGTACCTG
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
50 32 0.46
52 37 0.54
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAAAATGGTTAGGT
Found at i:80532162 original size:51 final size:51
Alignment explanation
Indices: 80531966--80532165 Score: 177
Period size: 51 Copynumber: 3.9 Consensus size: 51
80531956 CCATTGAGAA
* * ** * * * *
80531966 CACATGTGTAGTACTATGTGCAGCCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAG-CTTAGAT
* * * *
80532018 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGAT-GGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGCTTAGAT
* * * * ** *
80532068 CTCATATGTAGTACTATGTGCAGGCTACTATGCGTACCTGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGCTTAGAT
* * * *
80532119 CACATGTGTGGTTCTAAGTGCAGGCCACTATGTGTAAAAGATAGCTT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGCTT
80532166 TTTCACAAGT
Statistics
Matches: 118, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
50 40 0.34
51 43 0.36
52 35 0.30
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGCTTAGAT
Found at i:80543887 original size:39 final size:39
Alignment explanation
Indices: 80543833--80543943 Score: 177
Period size: 39 Copynumber: 2.8 Consensus size: 39
80543823 ATGGAGAATT
80543833 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTA
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTA
* * *
80543872 ATATCCGGGCTAAGTCTCGAAGGTATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTA
* *
80543911 ATATTCGTGCTAAGTCCCGAAGGCATTCGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCT
80543944 AAGTCCCGAA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTA
Found at i:80543941 original size:22 final size:22
Alignment explanation
Indices: 80543913--80543965 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
80543903 CTGGTGTTAT
*
80543913 ATTCGTGCTAAGTCCCGAAGGC
1 ATTCGTGCTAAGTCCCGAAGAC
80543935 ATTCGTGCTAAGTCCCGAAGAC
1 ATTCGTGCTAAGTCCCGAAGAC
80543957 ATTCGTGCT
1 ATTCGTGCT
80543966 GGTATTATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (22 bp):
ATTCGTGCTAAGTCCCGAAGAC
Found at i:80543954 original size:61 final size:61
Alignment explanation
Indices: 80543880--80544004 Score: 189
Period size: 61 Copynumber: 2.0 Consensus size: 61
80543870 TAATATCCGG
* ** * *
80543880 GCTAAGTCTCGAAGGTATTCGTGCTGGTGTTATAT-TCGTGCTAAGTCCCGAAGGCATTCGT
1 GCTAAGTCCCGAAGACATTCGTGCTGGTATTATATCT-GGGCTAAGTCCCGAAGGCATTCGT
80543941 GCTAAGTCCCGAAGACATTCGTGCTGGTATTATATCTGGGCTAAGTCCCGAAGGCATTCGT
1 GCTAAGTCCCGAAGACATTCGTGCTGGTATTATATCTGGGCTAAGTCCCGAAGGCATTCGT
80544002 GCT
1 GCT
80544005 GGTGTTATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 57 0.98
62 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (61 bp):
GCTAAGTCCCGAAGACATTCGTGCTGGTATTATATCTGGGCTAAGTCCCGAAGGCATTCGT
Found at i:80543999 original size:39 final size:39
Alignment explanation
Indices: 80543941--80544095 Score: 222
Period size: 39 Copynumber: 4.0 Consensus size: 39
80543931 AGGCATTCGT
* *
80543941 GCTAAGTCCCGAAGACATTCGTGCTGGTATTATATCTGG
1 GCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGG
*
80543980 GCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGG
1 GCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGG
* * *
80544019 GCTAAGTCCCAAAGGCATTCGTGCTAGTGTTATATCCGG
1 GCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGG
* *
80544058 GCTAAAGTCCCGCAGGC-TTTGTGCTGGTATTATATCCG
1 GCT-AAGTCCCGAAGGCATTCGTGCTGGTATTATATCCG
80544096 AGCTTAAAGT
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
39 94 0.90
40 11 0.10
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.30
Consensus pattern (39 bp):
GCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGG
Found at i:80544014 original size:100 final size:100
Alignment explanation
Indices: 80543841--80544044 Score: 327
Period size: 100 Copynumber: 2.0 Consensus size: 100
80543831 TTATATCCGG
* * * *
80543841 GCTAAGTCCCGAAGGCATTCGTGCTGGTGTAATATCCGGGCTAAGTCTCGAAGGTATTCGTGCTG
1 GCTAAGTCCCGAAGACATTCGTGCTGGTATAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTG
* * *
80543906 GTGTTATATTCGTGCTAAGTCCCGAAGGCATTCGT
66 GTGTTATATCCGGGCTAAGTCCCAAAGGCATTCGT
* *
80543941 GCTAAGTCCCGAAGACATTCGTGCTGGTATTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTG
1 GCTAAGTCCCGAAGACATTCGTGCTGGTATAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTG
80544006 GTGTTATATCCGGGCTAAGTCCCAAAGGCATTCGT
66 GTGTTATATCCGGGCTAAGTCCCAAAGGCATTCGT
80544041 GCTA
1 GCTA
80544045 GTGTTATATC
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 95 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (100 bp):
GCTAAGTCCCGAAGACATTCGTGCTGGTATAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTG
GTGTTATATCCGGGCTAAGTCCCAAAGGCATTCGT
Found at i:80544082 original size:139 final size:139
Alignment explanation
Indices: 80543830--80544082 Score: 400
Period size: 139 Copynumber: 1.8 Consensus size: 139
80543820 ATAATGGAGA
* *
80543830 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTAATATCCGGGCTAAGTCTCGAAGG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTAATATCCGGGCTAAGTCCCAAAGG
* * * *
80543895 TATTCGTGCTGGTGTTATATTCGTGCTAAGTCCCGAAGGCATTCGTGCTAAGTCCCGAAGACATT
66 CATTCGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTCCCGAAGACATT
80543960 CGTGCTGGT
131 CGTGCTGGT
* *
80543969 ATTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTAATATCCGGGCTAAGTCCCAAAGG
* *
80544034 CATTCGTGCTAGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCT
66 CATTCGTGCTAGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCT
80544083 GGTATTATAT
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
139 91 0.88
140 12 0.12
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (139 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTAATATCCGGGCTAAGTCCCAAAGG
CATTCGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTCCCGAAGACATT
CGTGCTGGT
Found at i:80544117 original size:40 final size:39
Alignment explanation
Indices: 80543961--80544126 Score: 167
Period size: 39 Copynumber: 4.2 Consensus size: 39
80543951 GAAGACATTC
* * *
80543961 GTGCTGGTATTATATCTGGGCT-AAGTCCCGA-AGGCATTC
1 GTGCTGGTGTTATATCCGGGCTAAAGTCCC-ACAGGC-TTT
* *
80544000 GTGCTGGTGTTATATCCGGGCT-AAGTCCCAAAGGCATTC
1 GTGCTGGTGTTATATCCGGGCTAAAGTCCCACAGGC-TTT
* *
80544039 GTGCTAGTGTTATATCCGGGCTAAAGTCCCGCAGGCTTT
1 GTGCTGGTGTTATATCCGGGCTAAAGTCCCACAGGCTTT
* * * *
80544078 GTGCTGGTATTATATCCGAGCTTAAAGTCCTACATGCTTT
1 GTGCTGGTGTTATATCCGGGC-TAAAGTCCCACAGGCTTT
*
80544118 GTGGTGGTG
1 GTGCTGGTG
80544127 ATTGGATTTG
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
38 1 0.01
39 76 0.69
40 33 0.30
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.32
Consensus pattern (39 bp):
GTGCTGGTGTTATATCCGGGCTAAAGTCCCACAGGCTTT
Found at i:80550172 original size:95 final size:95
Alignment explanation
Indices: 80550008--80550198 Score: 310
Period size: 95 Copynumber: 2.0 Consensus size: 95
80549998 TCACTTATCC
* * * **
80550008 TTAACCATTTAAACATCCAACTCCATACCTAAATATGGCAATTCAAATCACCAATTTACAATCGG
1 TTAACCATTTAAACATCCAACTCCATACCTAAATATGCCAATTCAAATCACAAACTTACAATCAA
*
80550073 AGTATCAATATATCAACCATAGACTAAACA
66 AGTATCAATACATCAACCATAGACTAAACA
80550103 TTAACCATTTAAACATCCAACTCCATACCTAAATATGCCAATTCAAATCACAAACTTACAATCAA
1 TTAACCATTTAAACATCCAACTCCATACCTAAATATGCCAATTCAAATCACAAACTTACAATCAA
* *
80550168 AGTATTAATACATCAATCATAGACTAAACA
66 AGTATCAATACATCAACCATAGACTAAACA
80550198 T
1 T
80550199 CACAACTCAT
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 88 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.27
Consensus pattern (95 bp):
TTAACCATTTAAACATCCAACTCCATACCTAAATATGCCAATTCAAATCACAAACTTACAATCAA
AGTATCAATACATCAACCATAGACTAAACA
Found at i:80554664 original size:27 final size:27
Alignment explanation
Indices: 80554632--80554811 Score: 98
Period size: 27 Copynumber: 6.7 Consensus size: 27
80554622 CTCGACTTGT
*
80554632 AAAATTACCAAAGTACTCTCGATTTAC
1 AAAATTACCAAAGTACCCTCGATTTAC
* ***
80554659 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCTCGATTTAC
* * * **
80554686 AAAACTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAGTACCCTC-GATTTAC
* * * *
80554713 AAAACTACCAAAATACCC-CTGGTTTGC
1 AAAATTACCAAAGTACCCTC-GATTTAC
* * *
80554740 AAAATTACCAAAATATCCCT-GGTTTGC
1 AAAATTACCAAAGTA-CCCTCGATTTAC
* * *
80554767 AAAATTACCAAAATACCCAT-GGTTTGC
1 AAAATTACCAAAGTACCC-TCGATTTAC
* *
80554794 AAAATTACTAAAATACCC
1 AAAATTACCAAAGTACCC
80554812 CTGTAGGGTA
Statistics
Matches: 133, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.03
27 126 0.95
28 3 0.02
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAGTACCCTCGATTTAC
Found at i:80554722 original size:54 final size:54
Alignment explanation
Indices: 80554674--80554841 Score: 176
Period size: 54 Copynumber: 3.1 Consensus size: 54
80554664 TACCATTTTA
*
80554674 CCCTCGATTTACAAAACTACCAAAATACCCCTGGTTTGTAAAACTACCAAAATAC
1 CCCT-GATTTACAAAACTACCAAAATACCCCTGGTTTGCAAAACTACCAAAATAC
* * * * *
80554729 CCCTGGTTTGCAAAATTACCAAAATATCCCTGGTTTGCAAAATTACCAAAATAC
1 CCCTGATTTACAAAACTACCAAAATACCCCTGGTTTGCAAAACTACCAAAATAC
* * * * * ** * *
80554783 CCATGGTTTGCAAAATTACTAAAATACCCCT-GTAGGGTAAAATTACCAAAATAC
1 CCCTGATTTACAAAACTACCAAAATACCCCTGGT-TTGCAAAACTACCAAAATAC
80554837 CCCTG
1 CCCTG
80554842 TAGGGTAGAA
Statistics
Matches: 99, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 2 0.02
54 93 0.94
55 4 0.04
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.26
Consensus pattern (54 bp):
CCCTGATTTACAAAACTACCAAAATACCCCTGGTTTGCAAAACTACCAAAATAC
Found at i:80554776 original size:81 final size:81
Alignment explanation
Indices: 80554685--80554841 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
80554675 CCTCGATTTA
* * **
80554685 CAAAACTACCAAAATACCCCTGGTTTGTAAAACTACCAAAATACCCCTGGT-TTGCAAAATTACC
1 CAAAACTACCAAAATACCCATGGTTTGCAAAACTACCAAAATACCCCT-GTAGGGCAAAATTACC
*
80554749 AAAATATCCCTGGTTTG
65 AAAATACCCCTGGTTTG
* * * *
80554766 CAAAATTACCAAAATACCCATGGTTTGCAAAATTACTAAAATACCCCTGTAGGGTAAAATTACCA
1 CAAAACTACCAAAATACCCATGGTTTGCAAAACTACCAAAATACCCCTGTAGGGCAAAATTACCA
80554831 AAATACCCCTG
66 AAATACCCCTG
80554842 TAGGGTAGAA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
80 2 0.03
81 64 0.97
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (81 bp):
CAAAACTACCAAAATACCCATGGTTTGCAAAACTACCAAAATACCCCTGTAGGGCAAAATTACCA
AAATACCCCTGGTTTG
Found at i:80554867 original size:27 final size:27
Alignment explanation
Indices: 80554686--80554857 Score: 127
Period size: 27 Copynumber: 6.4 Consensus size: 27
80554676 CTCGATTTAC
* **
80554686 AAAACTACCAAAATACCCCTGGT-TTGT
1 AAAATTACCAAAATACCCCT-GTAGGGT
* ** *
80554713 AAAACTACCAAAATACCCCTGGT-TTGC
1 AAAATTACCAAAATACCCCT-GTAGGGT
* ** *
80554740 AAAATTACCAAAATATCCCTGGT-TTGC
1 AAAATTACCAAAATACCCCT-GTAGGGT
* ** *
80554767 AAAATTACCAAAATACCCATGGT-TTGC
1 AAAATTACCAAAATACCCCT-GTAGGGT
*
80554794 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTGTAGGGT
80554821 AAAATTACCAAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTGTAGGGT
*
80554848 AGAATTACCA
1 AAAATTACCA
80554858 TTTTGCCCCT
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
26 2 0.02
27 130 0.98
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.25
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGTAGGGT
Found at i:80560430 original size:23 final size:23
Alignment explanation
Indices: 80560400--80560451 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
80560390 TTAAATGATT
80560400 GTGGCTTAATTATTTTATGGCAA
1 GTGGCTTAATTATTTTATGGCAA
80560423 GTGGCTTAATTATTTTATGGCAA
1 GTGGCTTAATTATTTTATGGCAA
80560446 GTGGCT
1 GTGGCT
80560452 ATTATGGTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.42
Consensus pattern (23 bp):
GTGGCTTAATTATTTTATGGCAA
Found at i:80564032 original size:47 final size:47
Alignment explanation
Indices: 80563979--80564226 Score: 424
Period size: 47 Copynumber: 5.3 Consensus size: 47
80563969 ATAAGATATG
* *
80563979 TATATGTGGTAAAGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
80564026 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
80564073 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGAGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
80564120 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* * *
80564167 TATATGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
80564214 TAAATGTGATAAG
1 TATATGTGATAAG
80564227 TCCCGAAGGG
Statistics
Matches: 191, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 191 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
Found at i:80564187 original size:25 final size:25
Alignment explanation
Indices: 80564017--80564187 Score: 105
Period size: 25 Copynumber: 7.2 Consensus size: 25
80564007 TGATGAATGT
80564017 GAATGTGTATATATGTGATAAGGCC
1 GAATGTGTATATATGTGATAAGGCC
** * * *
80564042 GAATG-G-CCA-ATGTGACGAATG-T
1 GAATGTGTATATATGTGA-TAAGGCC
80564064 GAATGTGTATATATGTGATAAGGCC
1 GAATGTGTATATATGTGATAAGGCC
** * *
80564089 GAATG-G-CCA-ATGTGATGAATG-A
1 GAATGTGTATATATGTGAT-AAGGCC
80564111 GAATGTGTATATATGTGATAAGGCC
1 GAATGTGTATATATGTGATAAGGCC
** * *
80564136 GAATG-G-CCA-ATGTGATGAATG-T
1 GAATGTGTATATATGTGAT-AAGGCC
80564158 GAATGTGTATATATGTGATAAGGCC
1 GAATGTGTATATATGTGATAAGGCC
*
80564183 AAATG
1 GAATG
80564188 GCCAATGTGA
Statistics
Matches: 104, Mismatches: 27, Indels: 30
0.65 0.17 0.19
Matches are distributed among these distances:
22 35 0.34
23 15 0.14
24 15 0.14
25 39 0.38
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (25 bp):
GAATGTGTATATATGTGATAAGGCC
Found at i:80566161 original size:39 final size:39
Alignment explanation
Indices: 80566107--80566431 Score: 499
Period size: 39 Copynumber: 8.3 Consensus size: 39
80566097 TAATGGAGAA
* *
80566107 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* * * *
80566146 TTATATCCAGGCTAAGTCTCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
*
80566185 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
80566224 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
80566263 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
80566302 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
** *
80566341 TTATATCTAGGCTAAGCCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* * * *
80566380 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGCCCCGAAGGCATTCGTGCTGGTG
*
80566419 TTATATTCGGGCT
1 TTATATCCGGGCT
80566432 TAAAGTCCCG
Statistics
Matches: 266, Mismatches: 19, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
39 255 0.96
40 11 0.04
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
Found at i:80567895 original size:46 final size:45
Alignment explanation
Indices: 80567828--80568090 Score: 224
Period size: 46 Copynumber: 5.7 Consensus size: 45
80567818 TGTAACCCGC
80567828 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
80567874 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * ***
80567920 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * *
80567967 CAATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
80568013 ACATCTCTCGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
80568060 CCATAAGTGAACTCGGACTCAGCTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
80568091 TACGGATGCC
Statistics
Matches: 164, Mismatches: 43, Indels: 20
0.72 0.19 0.09
Matches are distributed among these distances:
45 2 0.01
46 95 0.58
47 64 0.39
48 3 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:80567948 original size:93 final size:93
Alignment explanation
Indices: 80567836--80568100 Score: 442
Period size: 93 Copynumber: 2.8 Consensus size: 93
80567826 GCCCATAAGT
* * *
80567836 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80567901 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
** *
80567929 GAACTCGGACTCAACTCAACGAGTTCAAACATTCGCATCAATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80567994 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
80568022 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAGCTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80568087 CGAG-TACGGATGCC
66 CGAGCT-CGGATGCC
80568101 CAAATATCCT
Statistics
Matches: 160, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
92 1 0.01
93 159 0.99
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:80567951 original size:47 final size:47
Alignment explanation
Indices: 80567882--80568050 Score: 193
Period size: 47 Copynumber: 3.6 Consensus size: 47
80567872 ATCCATAAGT
80567882 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* ** * * ***
80567929 GAACTCGGACTCAACTCAACGAGTTCAAACATTCGC-A-TCA-ATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTC--GGATGC-CTAGTTACATCTCTC
80567975 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* *
80568022 GAACTCGGACTCAACTCAACAAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
80568051 CATTCGCATC
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 28 0.29
47 55 0.57
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:80571739 original size:30 final size:30
Alignment explanation
Indices: 80571705--80571770 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
80571695 CATTTAAGGG
* * *
80571705 TCACACTCCCTTGTTAACAAGCCATGTGCC
1 TCACACACCCGTGTTAACAAGCCATGAGCC
* *
80571735 TCACACACCCGTGTTAACAGGCCGTGAGCC
1 TCACACACCCGTGTTAACAAGCCATGAGCC
80571765 TCACAC
1 TCACAC
80571771 GGCTACCAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.38, G:0.17, T:0.21
Consensus pattern (30 bp):
TCACACACCCGTGTTAACAAGCCATGAGCC
Found at i:80573534 original size:43 final size:42
Alignment explanation
Indices: 80573486--80573629 Score: 153
Period size: 43 Copynumber: 3.4 Consensus size: 42
80573476 TCCCGAATAT
* * * *
80573486 GGTCTTACATGTTATCACATATCGATGCCACTGTCCTAGACAG
1 GGTCTTACATGTAATCACATA-CGATGCCAATGTCCCAGACAC
* * * *
80573529 GGTCTTATATGAAATCATATAACGATGCCAATGTCCCAAACAC
1 GGTCTTACATGTAATCACAT-ACGATGCCAATGTCCCAGACAC
* * * *
80573572 GGTCTTACAAGTAATTACAGTACAATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATCACA-TACGATGCCAATGTCCCAGACAC
80573615 GGTCTTACATGTAAT
1 GGTCTTACATGTAAT
80573630 GTCATCTCGG
Statistics
Matches: 82, Mismatches: 17, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
43 80 0.98
44 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (42 bp):
GGTCTTACATGTAATCACATACGATGCCAATGTCCCAGACAC
Found at i:80575150 original size:22 final size:22
Alignment explanation
Indices: 80575100--80575142 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
80575090 TAACATGTGT
80575100 CACATATA-TCATGAGCCCAGAC
1 CACATA-ACTCATGAGCCCAGAC
*
80575122 CACATAACTCATGAGCTCAGA
1 CACATAACTCATGAGCCCAGA
80575143 TCGCATAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.37, C:0.30, G:0.14, T:0.19
Consensus pattern (22 bp):
CACATAACTCATGAGCCCAGAC
Found at i:80577645 original size:55 final size:53
Alignment explanation
Indices: 80577509--80577712 Score: 219
Period size: 55 Copynumber: 3.8 Consensus size: 53
80577499 CTTTTTAAAT
* * * * *
80577509 TTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTACCTTATGAAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAC
* * * * * **
80577562 TCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AAC
* * * *
80577617 TTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAAC
* *
80577671 TTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
80577713 AAACCCTATG
Statistics
Matches: 121, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 41 0.34
54 38 0.31
55 42 0.35
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.38
Consensus pattern (53 bp):
TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAC
Found at i:80581077 original size:49 final size:49
Alignment explanation
Indices: 80581021--80581140 Score: 125
Period size: 49 Copynumber: 2.4 Consensus size: 49
80581011 GTCGATAACG
* *
80581021 TGTCCCAGATAAGTCTGACACTGACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCCAGACAAGTCTGACACTGACTCTCATATATCG-GTGCCGATGCCA
* * * * * * *
80581070 TGTCCCAGACAAGTTTTACACTGGCTCTCATCTATTGGTGTCGGTGCCA
1 TGTCCCAGACAAGTCTGACACTGACTCTCATATATCGGTGCCGATGCCA
* *
80581119 TGTCCCAGACAGGTCTTACACT
1 TGTCCCAGACAAGTCTGACACT
80581141 AACACACAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 58 0.98
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
TGTCCCAGACAAGTCTGACACTGACTCTCATATATCGGTGCCGATGCCA
Found at i:80581488 original size:21 final size:20
Alignment explanation
Indices: 80581460--80581499 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
80581450 CACTTGAAAC
80581460 AGGGAACACGCCCGTGTGGA
1 AGGGAACACGCCCGTGTGGA
80581480 AGGGCAACACGCCCGTGTGG
1 AGGG-AACACGCCCGTGTGG
80581500 CCCTGTTGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.23, C:0.28, G:0.40, T:0.10
Consensus pattern (20 bp):
AGGGAACACGCCCGTGTGGA
Found at i:80601680 original size:47 final size:49
Alignment explanation
Indices: 80601603--80601725 Score: 155
Period size: 49 Copynumber: 2.5 Consensus size: 49
80601593 AAATGTCAAC
80601603 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-AT-TAAAGTC-GAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTAGCATCTATCT-AAGTCAG-T
** **
80601651 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCTGTGTCAGT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTAGCATCTATCTAAGTCAGT
80601700 GCCATGTCCCAGACAGGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
80601726 AGCTTGTATA
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
47 17 0.25
48 16 0.24
49 32 0.48
50 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTAGCATCTATCTAAGTCAGT
Found at i:80601768 original size:97 final size:97
Alignment explanation
Indices: 80601603--80601780 Score: 234
Period size: 97 Copynumber: 1.8 Consensus size: 97
80601593 AAATGTCAAC
* * *
80601603 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATTAAAGTCGATGCCATGTCCCAGACAGG
1 GCCATGTCCCAGACATGGTCTTACACTAGCTAGCACATTAAAGCCGATGCCATGTCCCAAACAGG
*
80601668 TCTTACACTGGCTCTCATCTATCTGTGTCAGT
66 TCTTACACTAGCTCTCATCTATCTGTGTCAGT
* * * * *
80601700 GCCATGTCCCAGACA-GGTCTTACACTAGCTTGTATATCCTGAGGCCGATG-CATGTCCCAAACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTAGCACAT--TAAAGCCGATGCCATGTCCCAAACA
*
80601763 TGTCTTACACTAGCTCTC
64 GGTCTTACACTAGCTCTC
80601781 GTCTCAATGC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
96 18 0.26
97 43 0.62
98 8 0.12
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (97 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTAGCACATTAAAGCCGATGCCATGTCCCAAACAGG
TCTTACACTAGCTCTCATCTATCTGTGTCAGT
Found at i:80607054 original size:12 final size:13
Alignment explanation
Indices: 80607037--80607071 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
80607027 GAAATAATTC
80607037 AATAATTAAAT-A
1 AATAATTAAATCA
80607049 AATAATTAAATCA
1 AATAATTAAATCA
*
80607062 AATAAGTAAA
1 AATAATTAAA
80607072 AATTATTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (13 bp):
AATAATTAAATCA
Found at i:80610201 original size:29 final size:29
Alignment explanation
Indices: 80610169--80610271 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
80610159 GTGACGAGAT
* *
80610169 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
80610198 TGGCACTAAGTGTGCGAGCTTGGACTATC
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* *
80610227 TGGCACTATGTGTGCGAGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
80610256 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
80610272 TGAACGATTA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:80613074 original size:40 final size:40
Alignment explanation
Indices: 80612909--80613076 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
80612899 AAATTGAATG
* * * * **
80612909 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
80612949 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
80612989 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
80613029 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
80613069 ATATCCGG
1 ATATCCGG
80613077 TTATATTCCG
Statistics
Matches: 105, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 104 0.99
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:80620355 original size:40 final size:40
Alignment explanation
Indices: 80620288--80620455 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
80620278 AGAAATTGAA
* * *
80620288 TATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
* * ***
80620327 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
*
80620367 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAAT
* * ** *
80620407 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
80620447 TATATCCGG
1 TATATCCGG
80620456 TTATATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 17 0.16
40 87 0.82
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
Found at i:80625995 original size:43 final size:43
Alignment explanation
Indices: 80625874--80625995 Score: 144
Period size: 43 Copynumber: 2.8 Consensus size: 43
80625864 ATCGAGATGA
*
80625874 GATTACATGTAAGACCATGTCT-AGGACATTGGCAT-TGTATTGC
1 GATTACGTGTAAGACCATGTCTGA-GACATTGGCATCTGTATT-C
* *
80625917 GATTACGTGTAAGACCGTGTCTGGGACATTGGCATCAT-TATAT-
1 GATTACGTGTAAGACCATGTCTGAGACATTGGCATC-TGTAT-TC
*
80625960 GATTTCGTGTAAGACCATGTCTGAGACATTGGCATC
1 GATTACGTGTAAGACCATGTCTGAGACATTGGCATC
80625996 GATATGAGGT
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
43 64 0.93
44 3 0.04
45 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGAGACATTGGCATCTGTATTC
Found at i:80630957 original size:39 final size:40
Alignment explanation
Indices: 80630893--80631007 Score: 115
Period size: 39 Copynumber: 2.9 Consensus size: 40
80630883 TTGTGATTAG
* ** *
80630893 GAAGTCCAAACAATGGCACATATGTGCATTCAGGGGCAAA
1 GAAGTACAAACAGGGGCACAGATGTGCATTCAGGGGCAAA
* * * * **
80630933 GAAGTACAAATA-GGGCATAGATGTGCATTCAAGTGCACC
1 GAAGTACAAACAGGGGCACAGATGTGCATTCAGGGGCAAA
* *
80630972 GAAGTGCAAACAGGGGCACATATGTGCATTCAGGGG
1 GAAGTACAAACAGGGGCACAGATGTGCATTCAGGGG
80631008 TACTTCTTCA
Statistics
Matches: 59, Mismatches: 15, Indels: 2
0.78 0.20 0.03
Matches are distributed among these distances:
39 30 0.51
40 29 0.49
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (40 bp):
GAAGTACAAACAGGGGCACAGATGTGCATTCAGGGGCAAA
Found at i:80631005 original size:20 final size:20
Alignment explanation
Indices: 80630907--80631007 Score: 62
Period size: 20 Copynumber: 5.1 Consensus size: 20
80630897 TCCAAACAAT
*
80630907 GGCACATATGTGCATTCAGG
1 GGCACAGATGTGCATTCAGG
* * * *
80630927 GGCAAAGAAGTACAAAT-A-G
1 GGCACAGATGTGC-ATTCAGG
* *
80630946 GGCATAGATGTGCATTCAAG
1 GGCACAGATGTGCATTCAGG
* * * **
80630966 TGCACCGAAGTGCAAACAGG
1 GGCACAGATGTGCATTCAGG
*
80630986 GGCACATATGTGCATTCAGG
1 GGCACAGATGTGCATTCAGG
80631006 GG
1 GG
80631008 TACTTCTTCA
Statistics
Matches: 56, Mismatches: 22, Indels: 6
0.67 0.26 0.07
Matches are distributed among these distances:
18 2 0.04
19 12 0.21
20 40 0.71
21 2 0.04
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.19
Consensus pattern (20 bp):
GGCACAGATGTGCATTCAGG
Found at i:80632939 original size:40 final size:41
Alignment explanation
Indices: 80632895--80633035 Score: 145
Period size: 40 Copynumber: 3.6 Consensus size: 41
80632885 GCATTCTTTC
* *
80632895 CAGTAGATTCAGTAGGTATGGCTCACAAGC-CTATATGTTT
1 CAGTAGATTCAGTAGGTATGGCTCAAAAGCGCTATACGTTT
* * *
80632935 CAGTAGATTCTGTAGGTGTGGCATCAAAAGCGC-ATACATTT
1 CAGTAGATTCAGTAGGTATGGC-TCAAAAGCGCTATACGTTT
*
80632976 CAATAGATTC---A-GTATGGCTCAAAAGCGCT-TACGTTT
1 CAGTAGATTCAGTAGGTATGGCTCAAAAGCGCTATACGTTT
*
80633012 C-GATAGATTTAGTAGGTATGGCTC
1 CAG-TAGATTCAGTAGGTATGGCTC
80633036 TTTTGAGCAC
Statistics
Matches: 83, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
36 23 0.28
37 6 0.07
38 1 0.01
39 1 0.01
40 29 0.35
41 22 0.27
42 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (41 bp):
CAGTAGATTCAGTAGGTATGGCTCAAAAGCGCTATACGTTT
Found at i:80633018 original size:36 final size:37
Alignment explanation
Indices: 80632953--80633025 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 37
80632943 TCTGTAGGTG
80632953 TGGCATCAAAAGCGCATACATTTCAATAGATTCAGTA
1 TGGCATCAAAAGCGCATACATTTCAATAGATTCAGTA
* * * *
80632990 TGGC-TCAAAAGCGCTTACGTTTCGATAGATTTAGTA
1 TGGCATCAAAAGCGCATACATTTCAATAGATTCAGTA
80633026 GGTATGGCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 28 0.88
37 4 0.12
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (37 bp):
TGGCATCAAAAGCGCATACATTTCAATAGATTCAGTA
Found at i:80639018 original size:11 final size:11
Alignment explanation
Indices: 80639002--80639027 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
80638992 CGAAGCCCAC
80639002 ATCACAATAAT
1 ATCACAATAAT
80639013 ATCACAATAAT
1 ATCACAATAAT
80639024 ATCA
1 ATCA
80639028 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:80641637 original size:40 final size:39
Alignment explanation
Indices: 80641579--80641719 Score: 145
Period size: 39 Copynumber: 3.7 Consensus size: 39
80641569 GCAAATTGTG
* *
80641579 ATATCC-GGCTAAGTCCCG-AGGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGC-AGTAATT
* *
80641618 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT--TG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTAATT
80641656 ATAATCCGGGCTAAGACCCGAAGGCA-TTGTGCA--AATT
1 AT-ATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTAATT
80641693 GATATCCGGGCTAAG-CCCGAAGGCATT
1 -ATATCCGGGCTAAGACCCGAAGGCATT
80641720 GCCGAGTTGC
Statistics
Matches: 88, Mismatches: 7, Indels: 16
0.79 0.06 0.14
Matches are distributed among these distances:
36 10 0.11
37 15 0.17
38 10 0.11
39 29 0.33
40 21 0.24
41 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTAATT
Found at i:80641719 original size:36 final size:37
Alignment explanation
Indices: 80641614--80641720 Score: 173
Period size: 39 Copynumber: 2.9 Consensus size: 37
80641604 TTATGCTAGT
80641614 AATT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AATTGATATCCGGGCTAAGACCCGAAGGCATT-GTGCA
*
80641651 AGTTGATAATCCGGGCTAAGACCCGAAGGCATTGTGCA
1 AATTGAT-ATCCGGGCTAAGACCCGAAGGCATTGTGCA
80641689 AATTGATATCCGGGCTAAG-CCCGAAGGCATTG
1 AATTGATATCCGGGCTAAGACCCGAAGGCATTG
80641721 CCGAGTTGCA
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
36 13 0.20
37 15 0.23
38 13 0.20
39 25 0.38
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.21
Consensus pattern (37 bp):
AATTGATATCCGGGCTAAGACCCGAAGGCATTGTGCA
Found at i:80641735 original size:37 final size:37
Alignment explanation
Indices: 80641618--80641760 Score: 175
Period size: 37 Copynumber: 3.8 Consensus size: 37
80641608 GCTAGTAATT
80641618 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTTG
*
80641656 ATAATCCGGGCTAAGACCCGAAGGCATTGTGCAAATTG
1 AT-ATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTTG
* *
80641694 ATATCCGGGCTAAG-CCCGAAGGCATTG-CCGAGTTG
1 ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTTG
* * *
80641729 CAATATCC-GGATAAGTCCCGAAGGCCTTGTGC
1 --ATATCCGGGCTAAGACCCGAAGGCATTGTGC
80641761 GGGTTACCAT
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
35 5 0.05
36 19 0.20
37 30 0.32
38 14 0.15
39 25 0.27
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (37 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTTG
Found at i:80649764 original size:34 final size:35
Alignment explanation
Indices: 80649644--80649817 Score: 180
Period size: 34 Copynumber: 4.9 Consensus size: 35
80649634 AAATTGAATG
* *
80649644 ATATCCGGGCTAAG-CCCGAAGACATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTGTGC--G--ATT
* *
80649682 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGA-T-T
80649720 A-ATCCGGGCTAAGACCCGAAGGCATTGTGC-ATT
1 ATATCCGGGCTAAGACCCGAAGGCATTGTGCGATT
80649753 ATATCCGGGCTAAGACCCGAAGGCA--GTGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTGTGCGATT
* *
80649786 GATATCCGGG-TAAGTCCCGAAGGCCTTGTGCG
1 -ATATCCGGGCTAAGACCCGAAGGCATTGTGCG
80649818 GGTTACCATA
Statistics
Matches: 120, Mismatches: 7, Indels: 21
0.81 0.05 0.14
Matches are distributed among these distances:
32 4 0.03
33 18 0.15
34 33 0.28
35 6 0.05
36 8 0.07
37 22 0.18
38 15 0.12
39 8 0.07
40 6 0.05
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (35 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCGATT
Found at i:80651527 original size:27 final size:27
Alignment explanation
Indices: 80651495--80651737 Score: 182
Period size: 27 Copynumber: 8.9 Consensus size: 27
80651485 TTAGTAAATC
*
80651495 TACAAACCAAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
* * * * *
80651522 TGCAAACCAATGGT-GTTCTGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
** * *
80651548 TTGAAAGTCAAGGGTATCTCTGTAATTT
1 TACAAA-TCAAGGGTATTTCGGTAATTT
* *
80651576 TCCAAATCAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
* * * *
80651603 TCCAAATTAGGGGTATTTTGGTAATTTT
1 TACAAATCAAGGGTATTTCGGTAA-TTT
* *
80651631 TACAAATCGAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
* ** * *
80651658 TCCAGGTCGAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
* * *
80651685 CACAAATTAAGGGTATTTTTGGTAATTT
1 TACAAATCAAGGGTA-TTTCGGTAATTT
* * * *
80651713 TACAAACCAGGGGCATTTCAGTAAT
1 TACAAATCAAGGGTATTTCGGTAAT
80651738 ACTAGCCTAC
Statistics
Matches: 171, Mismatches: 41, Indels: 8
0.78 0.19 0.04
Matches are distributed among these distances:
26 14 0.08
27 100 0.58
28 57 0.33
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCGGTAATTT
Found at i:80651638 original size:55 final size:55
Alignment explanation
Indices: 80651504--80651718 Score: 188
Period size: 55 Copynumber: 3.9 Consensus size: 55
80651494 CTACAAACCA
* * * * * * **
80651504 AGGGTATTTCGGTAATTTTGCAAACCAATGGTGTTCT-GTAATTTTTGAAAGTCA-
1 AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTCCAAAGT-AG
* * *
80651558 AGGGTATCTCT-GTAATTTTCCAAATCAAGGGTATTTTGGTAATTTTCCAAATTAG
1 AGGGTAT-TTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTCCAAAGTAG
* * * * *
80651613 -GGGTATTTTGGTAATTTTTACAAATCGAGGGTATTTCGATAATTTTCC-AGGTCG
1 AGGGTATTTTGGTAA-TTTTACAAATCAAGGGTATTTTGGTAATTTTCCAAAGTAG
* * *
80651667 AGGGTATTTTGGTAATTTCACAAATTAAGGGTATTTTTGGTAATTTTACAAA
1 AGGGTATTTTGGTAATTTTACAAATCAAGGGTA-TTTTGGTAATTTTCCAAA
80651719 CCAGGGGCAT
Statistics
Matches: 128, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
53 2 0.02
54 57 0.45
55 68 0.53
56 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (55 bp):
AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTCCAAAGTAG
Found at i:80651730 original size:28 final size:28
Alignment explanation
Indices: 80651673--80651730 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
80651663 GTCGAGGGTA
** *
80651673 TTTTGGTAATTTCACAAATTAAGGGTAT
1 TTTTGGTAATTTCACAAACCAAGGGCAT
* *
80651701 TTTTGGTAATTTTACAAACCAGGGGCAT
1 TTTTGGTAATTTCACAAACCAAGGGCAT
80651729 TT
1 TT
80651731 CAGTAATACT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.41
Consensus pattern (28 bp):
TTTTGGTAATTTCACAAACCAAGGGCAT
Found at i:80651731 original size:82 final size:82
Alignment explanation
Indices: 80651570--80651731 Score: 222
Period size: 82 Copynumber: 2.0 Consensus size: 82
80651560 GGTATCTCTG
*
80651570 TAATTTTCCAAATCAAGGGTATTTTGGTAATTTTCCAAATTAGGGGTATTTTGGTAATTTTTACA
1 TAATTTTCCAAATCAAGGGTATTTTGGTAATTTTCCAAATTAAGGGTATTTTGGTAATTTTTACA
* *
80651635 AATCGAGGGTATTTCGA
66 AACCGAGGGCATTTCGA
** *
80651652 TAATTTTCCAGGTCGAGGGTATTTTGGTAA-TTTCACAAATTAAGGGTATTTTTGGTAA-TTTTA
1 TAATTTTCCAAATCAAGGGTATTTTGGTAATTTTC-CAAATTAAGGGTA-TTTTGGTAATTTTTA
80651715 CAAACC-AGGGGCATTTC
64 CAAACCGA-GGGCATTTC
80651732 AGTAATACTA
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
81 5 0.07
82 57 0.80
83 9 0.13
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.40
Consensus pattern (82 bp):
TAATTTTCCAAATCAAGGGTATTTTGGTAATTTTCCAAATTAAGGGTATTTTGGTAATTTTTACA
AACCGAGGGCATTTCGA
Found at i:80655937 original size:12 final size:12
Alignment explanation
Indices: 80655920--80655944 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80655910 TAGGGGTATG
80655920 ATCCTCATTTTT
1 ATCCTCATTTTT
80655932 ATCCTCATTTTT
1 ATCCTCATTTTT
80655944 A
1 A
80655945 GTTTCAGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.24, G:0.00, T:0.56
Consensus pattern (12 bp):
ATCCTCATTTTT
Found at i:80661282 original size:42 final size:42
Alignment explanation
Indices: 80661170--80661291 Score: 167
Period size: 43 Copynumber: 2.9 Consensus size: 42
80661160 TACCGTACCA
* * *
80661170 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
*
80661212 ATGCCAATAGCCCA-ACTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACACGTAA-TCTCATATCG
80661255 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
80661292 GTAACCCTAA
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
42 34 0.49
43 36 0.51
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:80664018 original size:43 final size:43
Alignment explanation
Indices: 80663962--80664085 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 43
80663952 TATGTCATAT
* * * * * *
80663962 ATATACCACAAACTCAGACCTACTCAATGAGTTTAGGTGTCAT
1 ATATATCATAAACTCAGACCAACTCAATGAGTTCAGATGTCAC
* * *
80664005 ATATTTCCTAAACTCAGACCAACTCAGTGAGTTCAGATGTCAC
1 ATATATCATAAACTCAGACCAACTCAATGAGTTCAGATGTCAC
* *
80664048 ATATATCATGAACTCAGACCAACTCATTGAGTTCAGAT
1 ATATATCATAAACTCAGACCAACTCAATGAGTTCAGAT
80664086 TACATAATTC
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (43 bp):
ATATATCATAAACTCAGACCAACTCAATGAGTTCAGATGTCAC
Found at i:80676507 original size:42 final size:42
Alignment explanation
Indices: 80676386--80676507 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
80676376 TACCGTACGA
* *
80676386 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* *
80676428 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
* * *
80676471 ATTCCATATCCCAGATATAGTCTTACCCGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
80676508 GTAACCCTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:80684818 original size:28 final size:28
Alignment explanation
Indices: 80684763--80684906 Score: 170
Period size: 28 Copynumber: 5.2 Consensus size: 28
80684753 AGCATGGCTG
* * *
80684763 CCAG-AACAGATA-TTGTGACTGAGTCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
*
80684789 CCA-AATACAGATAATTGTGGCA-AGGCCA
1 CCAGAA-ACAGATATTTGTGGCAGA-GCCA
* *
80684817 CCAGAAATAGATATTTGTAGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
*
80684845 CCAGAAACAGATATTTATGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
*
80684873 CCAGAAAAAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
80684901 CCAGAA
1 CCAGAA
80684907 CGCTTCCTCC
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
26 4 0.04
27 8 0.08
28 86 0.85
29 3 0.03
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:80686795 original size:24 final size:24
Alignment explanation
Indices: 80686553--80686789 Score: 438
Period size: 24 Copynumber: 9.9 Consensus size: 24
80686543 GCAAAGACCA
80686553 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
80686577 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
80686601 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
80686625 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
80686649 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
80686673 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
80686697 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
80686721 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
80686745 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
80686769 TATGGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
80686790 TGCTATAGTC
Statistics
Matches: 206, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 206 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:80689208 original size:17 final size:17
Alignment explanation
Indices: 80689186--80689218 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80689176 TCGGCTATAG
80689186 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
*
80689203 AGAAAAGAGAAGATGA
1 AGAAAAGAAAAGATGA
80689219 GAAGGGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:80700158 original size:28 final size:27
Alignment explanation
Indices: 80700092--80700161 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
80700082 ATAGTGAGTC
*
80700092 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
80700119 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
80700147 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80700162 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:80700276 original size:42 final size:42
Alignment explanation
Indices: 80700170--80700276 Score: 162
Period size: 42 Copynumber: 2.5 Consensus size: 42
80700160 CTGTACAAAT
*
80700170 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
**
80700212 TTTATACCCGCACAAAGT-GTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCAC-ACTTAGTGCCAATCTTGTCACCGTGTCCA
*
80700254 TTTATAGCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
80700277 GAGACCAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
41 2 0.04
42 53 0.93
43 2 0.04
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:80710874 original size:28 final size:27
Alignment explanation
Indices: 80710808--80710877 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
80710798 ATAGTGAGTC
*
80710808 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
80710835 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
80710863 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80710878 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:80710950 original size:42 final size:42
Alignment explanation
Indices: 80710886--80710992 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
80710876 CTGTACAAAT
*
80710886 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
80710928 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
*
80710970 TTTATAGCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
80710993 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:80716432 original size:40 final size:40
Alignment explanation
Indices: 80716386--80716548 Score: 211
Period size: 40 Copynumber: 4.1 Consensus size: 40
80716376 GGGATTTAGT
80716386 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
* *
80716426 CGGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * * *
80716466 CGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCC
1 CGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * * * *
80716506 CGGATATAGCAACTCGCACGAATGCCTTTGGATCTTAGTC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
80716546 CGG
1 CGG
80716549 TTATCATCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
Found at i:80720274 original size:29 final size:29
Alignment explanation
Indices: 80720213--80720315 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
80720203 GTGACGAGAT
* * *
80720213 TGGCACTGAGTGTACGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
80720242 TGGCACTAAGTGTGCGAGCTTGGACTATC
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* *
80720271 TGGCACTATGTGTGCGAGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
80720300 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
80720316 TGAACGATTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:80727144 original size:65 final size:65
Alignment explanation
Indices: 80727040--80727171 Score: 237
Period size: 65 Copynumber: 2.0 Consensus size: 65
80727030 CCCCTAGGGT
* * *
80727040 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGAATATTACTATTTACTGCATGCCATGTTATTATTATCCGA
80727105 TAAGGTTGACCTGAATGCATGTTTGAATATTACTATTTACTGCATGCCATGTTATTATTATCCGA
1 TAAGGTTGACCTGAATGCATGTTTGAATATTACTATTTACTGCATGCCATGTTATTATTATCCGA
80727170 TA
1 TA
80727172 CATGGGAATG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGAATATTACTATTTACTGCATGCCATGTTATTATTATCCGA
Found at i:80730933 original size:21 final size:20
Alignment explanation
Indices: 80730903--80730945 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
80730893 CTATGCGAGT
80730903 TAATAAATAAAATAAAAATAA
1 TAATAAATAAAATAAAAA-AA
* *
80730924 TAATATATAATATAAAAAAA
1 TAATAAATAAAATAAAAAAA
80730944 TA
1 TA
80730946 GGCAATAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
TAATAAATAAAATAAAAAAA
Found at i:80731354 original size:65 final size:65
Alignment explanation
Indices: 80731250--80731380 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
80731240 CCCCTAAGGT
*
80731250 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
*
80731315 TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCGATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
80731380 T
1 T
80731381 GCATGGGACT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:80735425 original size:40 final size:40
Alignment explanation
Indices: 80735380--80735559 Score: 265
Period size: 40 Copynumber: 4.5 Consensus size: 40
80735370 TTCGAATGAT
80735380 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
80735420 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
80735460 ATCCGGGGTAATTCCCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
80735500 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
80735541 A-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGTTAAT-TCCCGAAG
80735560 ACAATCAAGT
Statistics
Matches: 127, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:80735584 original size:80 final size:80
Alignment explanation
Indices: 80735380--80735599 Score: 205
Period size: 80 Copynumber: 2.8 Consensus size: 80
80735370 TTCGAATGAT
* * * *** * *
80735380 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATT
1 ATCCGGGCTAATTCCCGAAGACAATCAAGCGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATT
* *
80735445 TGTGCGAGTTACTAA
66 TGCGCGAATTACTAA
* * *** *
80735460 ATCCGGGGTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAATTCCCGAAGACAATCAAGCGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATT
80735525 TGCGCGAATTACTATA
66 TGCGCGAATTACTA-A
* * * *
80735541 A-CCGGGCT-ATGTCCCGAAGACAATCAAGTGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAT-TCCCGAAGACAATCAAGCGAGTTA-CCAAATCCGGGTTAAATCCCGAAGG
80735600 TACGTGATTC
Statistics
Matches: 121, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
79 18 0.15
80 101 0.83
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAATTCCCGAAGACAATCAAGCGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATT
TGCGCGAATTACTAA
Found at i:80735593 original size:120 final size:119
Alignment explanation
Indices: 80735380--80735599 Score: 259
Period size: 120 Copynumber: 1.8 Consensus size: 119
80735370 TTCGAATGAT
* * * * * *
80735380 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAATTCCCGAAGACAAT
***
80735445 TGTGCGAGTTACTAAATCCGGGGTAATTCCCGAAGGCAATTGTGCGAGTTACCAA
66 CAAGCGAGTTACTAAATCCGGGGTAATT-CCGAAGGCAATTGTGCGAGTTACCAA
80735500 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAGACA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTA-AATCCGGGCTAAT-TCCCGAAGACA
* * *
80735563 ATCAAGTGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
64 ATCAAGCGAGTTA-CTAAATCCGGGGT-AATTCCGAAGG
80735600 TACGTGATTC
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
119 14 0.17
120 68 0.81
121 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (119 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAATTCCCGAAGACAAT
CAAGCGAGTTACTAAATCCGGGGTAATTCCGAAGGCAATTGTGCGAGTTACCAA
Found at i:80736972 original size:42 final size:42
Alignment explanation
Indices: 80736924--80737031 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 42
80736914 TGAGATTACG
* **
80736924 TGTAAGACCATATATGGGATATGACATCAATATGAGGAT-TTA
1 TGTAAGACCATATCTGGGATATGACATCAATATGA-GATCCCA
* * * *
80736966 TGTAAGAACATAGCTGGGCTATTGGCATCAATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGACATCAATATGAGATCCCA
*
80737009 TGTAAGACCATATCTAGGATATG
1 TGTAAGACCATATCTGGGATATG
80737032 GCATTGGTAT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
42 22 0.42
43 31 0.58
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGACATCAATATGAGATCCCA
Found at i:80738865 original size:26 final size:27
Alignment explanation
Indices: 80738829--80738881 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
80738819 ATGTTGTAGA
80738829 CCCTAAAGAAATAGT-AAAAAAATATT
1 CCCTAAAGAAATAGTCAAAAAAATATT
80738855 CCCTAAAGAAATAGTCAAAAAAATATT
1 CCCTAAAGAAATAGTCAAAAAAATATT
80738882 TCTACTTCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.57, C:0.13, G:0.08, T:0.23
Consensus pattern (27 bp):
CCCTAAAGAAATAGTCAAAAAAATATT
Found at i:80741737 original size:40 final size:40
Alignment explanation
Indices: 80741681--80741820 Score: 122
Period size: 40 Copynumber: 3.5 Consensus size: 40
80741671 GGATATAGCG
* * * *
80741681 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TAAGA
* * **
80741721 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
* ** * **
80741761 ACTCGCACAAATGCCTTC-GGATCTTAGTCCAGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGA-CATAACCCGGATTTAAGA
80741801 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
80741821 ATCTTAGTCC
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.04
40 79 0.93
41 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
Found at i:80741821 original size:40 final size:40
Alignment explanation
Indices: 80741722--80741873 Score: 193
Period size: 40 Copynumber: 3.8 Consensus size: 40
80741712 GTTATAATAG
**
80741722 CTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTGGGAA
1 CTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTGGGAA
*
80741762 CTCGCACAAATGCCTTCGGATCTTAGTCCAGATTTGGGAA
1 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAA
**
80741802 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGTCA
1 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAA
* *
80741842 CTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 C-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
80741874 CATCATTCGA
Statistics
Matches: 101, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.03
40 87 0.86
41 11 0.11
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAA
Found at i:80747343 original size:31 final size:31
Alignment explanation
Indices: 80747303--80747369 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
80747293 GGACACTCCG
*
80747303 GTGTGGGCAGGTCATGTGGTCACACACGCCC
1 GTGTCGGCAGGTCATGTGGTCACACACGCCC
*
80747334 GTGTCGGCAGGTCGTGTGGTCACACACGCCC
1 GTGTCGGCAGGTCATGTGGTCACACACGCCC
80747365 GTGTC
1 GTGTC
80747370 CCTAACCCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.13, C:0.30, G:0.36, T:0.21
Consensus pattern (31 bp):
GTGTCGGCAGGTCATGTGGTCACACACGCCC
Found at i:80749565 original size:23 final size:23
Alignment explanation
Indices: 80749522--80749565 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
80749512 CATCATAATA
*
80749522 TCATCTATTTCATATCACAAAAC
1 TCATCTATATCATATCACAAAAC
*
80749545 TCATC-ATATCATCATCTCAAA
1 TCATCTATATCAT-ATCACAAA
80749566 CCAAAACAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (23 bp):
TCATCTATATCATATCACAAAAC
Found at i:80751419 original size:20 final size:20
Alignment explanation
Indices: 80751394--80751436 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
80751384 AATAATTTTT
80751394 TGACCTCAGAGTTGTGGTTC
1 TGACCTCAGAGTTGTGGTTC
80751414 TGACCTCAGAGTTGTGGTTC
1 TGACCTCAGAGTTGTGGTTC
80751434 TGA
1 TGA
80751437 AACCACTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.16, C:0.19, G:0.30, T:0.35
Consensus pattern (20 bp):
TGACCTCAGAGTTGTGGTTC
Found at i:80754362 original size:43 final size:43
Alignment explanation
Indices: 80754222--80754422 Score: 224
Period size: 43 Copynumber: 4.6 Consensus size: 43
80754212 CTGGCCTTTG
* * * * * * *
80754222 AGCCTAGCAGGCTATGATGCTGATGAGATACTATTCAGGCCTTCA
1 AGCCTAGCAGGCTATAATGCCGGTGAAATAATA-TC-GGGCATCA
* * * * *
80754267 AGCCTAACAGGCTATAATGCTGGTGAGATATTATTCGGGCCTCA
1 AGCCTAGCAGGCTATAATGCCGGTGAAATAATA-TCGGGCATCA
*
80754311 AGCCTAGCAGGCTATAATGTCGGTGAAATAATATCGGGCATCA
1 AGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCATCA
* *
80754354 ACCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCTTCA
1 AGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCATCA
*
80754397 AGCCTAGCAGGCGA-AATGCCGGTGAA
1 AGCCTAGCAGGCTATAATGCCGGTGAA
80754423 TGAATTCAGA
Statistics
Matches: 139, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
42 12 0.09
43 61 0.44
44 34 0.24
45 32 0.23
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.23
Consensus pattern (43 bp):
AGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCATCA
Found at i:80754379 original size:87 final size:85
Alignment explanation
Indices: 80754264--80754422 Score: 228
Period size: 87 Copynumber: 1.8 Consensus size: 85
80754254 ATTCAGGCCT
* * * * *
80754264 TCAAGCCTAACAGGCTATAATGCTGGTGAGATATTATTCGGGCCTCAAGCCTAGCAGGCTATAAT
1 TCAACCCTAACAGGCTATAATGCCGGTGAAATAATA-TCGGGCCTCAAGCCTAGCAGGCGA-AAT
*
80754329 GTCGGTGAAATAATATCGGGCA
64 GCCGGTGAAATAATATCGGGCA
* *
80754351 TCAACCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCTTCAAGCCTAGCAGGCGAAATGC
1 TCAACCCTAACAGGCTATAATGCCGGTGAAATAATATCGGGCCTCAAGCCTAGCAGGCGAAATGC
80754416 CGGTGAA
66 CGGTGAA
80754423 TGAATTCAGA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
85 11 0.17
86 22 0.34
87 31 0.48
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (85 bp):
TCAACCCTAACAGGCTATAATGCCGGTGAAATAATATCGGGCCTCAAGCCTAGCAGGCGAAATGC
CGGTGAAATAATATCGGGCA
Found at i:80756645 original size:22 final size:22
Alignment explanation
Indices: 80756601--80756645 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
80756591 GACCAAGCTA
* *
80756601 CAAGCGTATCATGATATCCCCT
1 CAAGCGTATAATGATACCCCCT
80756623 CAAG-GTATAATGATACCCACCT
1 CAAGCGTATAATGATACCC-CCT
80756645 C
1 C
80756646 GTGACAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.24
Consensus pattern (22 bp):
CAAGCGTATAATGATACCCCCT
Found at i:80763387 original size:12 final size:12
Alignment explanation
Indices: 80763356--80763381 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80763346 CACATTCTTA
80763356 TTGGTTAATATT
1 TTGGTTAATATT
80763368 TTGGTTAATATT
1 TTGGTTAATATT
80763380 TT
1 TT
80763382 TTTTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (12 bp):
TTGGTTAATATT
Found at i:80773557 original size:9 final size:10
Alignment explanation
Indices: 80773535--80773572 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
80773525 ATTACTACAA
80773535 TATTAAAAAT
1 TATTAAAAAT
80773545 TATTAAAAA-
1 TATTAAAAAT
80773554 TATTAAAAAT
1 TATTAAAAAT
80773564 TATTAAAAA
1 TATTAAAAA
80773573 CAATATCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.33
10 18 0.67
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
TATTAAAAAT
Found at i:80773557 original size:19 final size:19
Alignment explanation
Indices: 80773533--80773572 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80773523 AAATTACTAC
80773533 AATATTAAAAATTATTAAA
1 AATATTAAAAATTATTAAA
80773552 AATATTAAAAATTATTAAA
1 AATATTAAAAATTATTAAA
80773571 AA
1 AA
80773573 CAATATCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AATATTAAAAATTATTAAA
Found at i:80773682 original size:10 final size:9
Alignment explanation
Indices: 80773663--80773745 Score: 69
Period size: 10 Copynumber: 8.6 Consensus size: 9
80773653 TATAGTTTCT
80773663 TAAATAATTA
1 TAAA-AATTA
80773673 TAAAACATTA
1 TAAAA-ATTA
*
80773683 AAAAAATTAA
1 TAAAAATT-A
*
80773693 AAAATAATTA
1 TAAA-AATTA
80773703 TAAGAAATTA
1 TAA-AAATTA
80773713 TAAATAATT-
1 TAAA-AATTA
*
80773722 TTAAAATTA
1 TAAAAATTA
80773731 TTAAAAATTA
1 -TAAAAATTA
80773741 TAAAA
1 TAAAA
80773746 CACATATAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 15
0.77 0.05 0.19
Matches are distributed among these distances:
8 4 0.06
9 13 0.21
10 40 0.65
11 5 0.08
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (9 bp):
TAAAAATTA
Found at i:80773730 original size:18 final size:18
Alignment explanation
Indices: 80773707--80773745 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
80773697 TAATTATAAG
*
80773707 AAATTA-TAAATAATTTTA
1 AAATTATTAAA-AATTATA
80773725 AAATTATTAAAAATTATA
1 AAATTATTAAAAATTATA
80773743 AAA
1 AAA
80773746 CACATATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATTATTAAAAATTATA
Found at i:80774403 original size:18 final size:18
Alignment explanation
Indices: 80774376--80774415 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
80774366 ATTTTTTTTC
**
80774376 AAAA-ATTAAAACTTATT
1 AAAATATTAAAAAATATT
80774393 AAAATATTAAAAAATATT
1 AAAATATTAAAAAATATT
80774411 AAAAT
1 AAAAT
80774416 TGATATAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAATATTAAAAAATATT
Found at i:80774449 original size:20 final size:20
Alignment explanation
Indices: 80774383--80774484 Score: 68
Period size: 20 Copynumber: 5.2 Consensus size: 20
80774373 TTCAAAAATT
* * *
80774383 AAAACTTATTAAAA-TATTA
1 AAAAATTATAAAAATTATAA
*
80774402 AAAAA-TATTAAAATTGAT-A
1 AAAAATTATAAAAATT-ATAA
* *
80774421 TAAACTTATAAAAATTATAA
1 AAAAATTATAAAAATTATAA
**
80774441 AAAAATTATAAGTATTATAA
1 AAAAATTATAAAAATTATAA
* *
80774461 AAATA-TATAATAAATTCTAA
1 AAAAATTATAA-AAATTATAA
80774481 AAAA
1 AAAA
80774485 GCATAATTTT
Statistics
Matches: 65, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
18 8 0.12
19 16 0.25
20 41 0.63
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAATTATAAAAATTATAA
Found at i:80774531 original size:20 final size:21
Alignment explanation
Indices: 80774494--80774542 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 21
80774484 AGCATAATTT
80774494 TTTTATAAAATTAATAAAACA
1 TTTTATAAAATTAATAAAACA
* *
80774515 TTTT-TAAAATT-TTTAAA-A
1 TTTTATAAAATTAATAAAACA
80774533 TTTTATAAAA
1 TTTTATAAAA
80774543 ATGTATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 5 0.20
19 9 0.36
20 7 0.28
21 4 0.16
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTTATAAAATTAATAAAACA
Found at i:80774541 original size:30 final size:31
Alignment explanation
Indices: 80774493--80774569 Score: 77
Period size: 30 Copynumber: 2.5 Consensus size: 31
80774483 AAGCATAATT
*
80774493 TTTTTATAAAATTAATAAAACAT-TTTTAAAA
1 TTTTTATAAAATTAATAAAA-ATGTATTAAAA
* *
80774524 TTTTTA-AAATTTTATAAAAATGTATTAAAA
1 TTTTTATAAAATTAATAAAAATGTATTAAAA
* *
80774554 TTATATAAAAAATTAA
1 TT-TTTATAAAATTAA
80774570 AAATTATAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
29 2 0.05
30 20 0.54
31 9 0.24
32 6 0.16
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (31 bp):
TTTTTATAAAATTAATAAAAATGTATTAAAA
Found at i:80774557 original size:19 final size:17
Alignment explanation
Indices: 80774535--80774613 Score: 68
Period size: 20 Copynumber: 4.1 Consensus size: 17
80774525 TTTTAAAATT
80774535 TTATAAAAATGTATTAAAA
1 TTATAAAAA--TATTAAAA
*
80774554 TTATATAAAAAATTAAAAA
1 TTATA-AAAATATT-AAAA
80774573 TTATAATAAAATATATAAGATA
1 TTAT-A-AAAATAT-TAA-A-A
80774595 TTATAAAAATATTAAAA
1 TTATAAAAATATTAAAA
80774612 TT
1 TT
80774614 GATATGAACT
Statistics
Matches: 52, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
17 3 0.06
18 4 0.08
19 16 0.31
20 21 0.40
21 3 0.06
22 5 0.10
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (17 bp):
TTATAAAAATATTAAAA
Found at i:80774570 original size:39 final size:41
Alignment explanation
Indices: 80774527--80774613 Score: 94
Period size: 40 Copynumber: 2.2 Consensus size: 41
80774517 TTTAAAATTT
*
80774527 TTAAAATTTTAT-A-AAAATGTATTAA-A-ATTATATAAAAAA
1 TTAAAATTTTATAATAAAATATA-TAAGATATTATA-AAAAAA
* *
80774566 TTAAAA-ATTATAATAAAATATATAAGATATTATAAAAATA
1 TTAAAATTTTATAATAAAATATATAAGATATTATAAAAAAA
80774606 TTAAAATT
1 TTAAAATT
80774614 GATATGAACT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
38 4 0.10
39 10 0.26
40 19 0.49
41 6 0.15
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (41 bp):
TTAAAATTTTATAATAAAATATATAAGATATTATAAAAAAA
Found at i:80793711 original size:20 final size:23
Alignment explanation
Indices: 80793669--80793711 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
80793659 TAAGGAAAAT
*
80793669 ATTATTTTCTGTTGTTTTGTAAA
1 ATTATTCTCTGTTGTTTTGTAAA
80793692 ATTATTCTC-GTT-TTTT-TAAA
1 ATTATTCTCTGTTGTTTTGTAAA
80793712 TTAACTAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 4 0.21
22 3 0.16
23 8 0.42
ACGTcount: A:0.23, C:0.07, G:0.09, T:0.60
Consensus pattern (23 bp):
ATTATTCTCTGTTGTTTTGTAAA
Found at i:80794519 original size:27 final size:27
Alignment explanation
Indices: 80794481--80794536 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
80794471 CGTGTGTCCA
80794481 GGCCGTATGAGGGGTTGT-AAGTCACAC
1 GGCCGTATGAGGGGTTGTGAA-TCACAC
*
80794508 GGCCGTGTGAGGGGTTGTGAATCACAC
1 GGCCGTATGAGGGGTTGTGAATCACAC
80794535 GG
1 GG
80794537 TCGCGTGCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.20, C:0.18, G:0.41, T:0.21
Consensus pattern (27 bp):
GGCCGTATGAGGGGTTGTGAATCACAC
Found at i:80795158 original size:22 final size:23
Alignment explanation
Indices: 80795130--80795181 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
80795120 GGGTAGGAAA
*
80795130 TTGCATCTGAT-TCTGATATATT
1 TTGCATCTCATATCTGATATATT
*
80795152 TTGCATC-CATATCTGATATGTT
1 TTGCATCTCATATCTGATATATT
*
80795174 CTGCATCT
1 TTGCATCT
80795182 TATTTGAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 2 0.08
22 23 0.92
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.46
Consensus pattern (23 bp):
TTGCATCTCATATCTGATATATT
Found at i:80796667 original size:66 final size:68
Alignment explanation
Indices: 80796591--80796777 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
80796581 TAGTACCACT
*
80796591 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
80796653 CACG
65 CACG
80796657 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
80796722 ATCACG
63 ATCACG
80796728 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
80796778 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:80796702 original size:71 final size:71
Alignment explanation
Indices: 80796614--80796777 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80796604 CGATTTGTCT
80796614 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80796679 CTTTCA
66 CTTTCA
80796685 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80796750 CTTTCA
66 CTTTCA
80796756 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80796778 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:80796815 original size:71 final size:70
Alignment explanation
Indices: 80796614--80796811 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
80796604 CGATTTGTCT
* * *
80796614 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
80796679 CTTTCA
65 CTTTCA
* * *
80796685 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
80796750 CTTTCA
65 CTTTCA
* *
80796756 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
80796812 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:80804236 original size:66 final size:68
Alignment explanation
Indices: 80804160--80804346 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
80804150 TAGTACCACT
*
80804160 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
80804222 CACG
65 CACG
80804226 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
80804291 ATCACG
63 ATCACG
80804297 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
80804347 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:80804271 original size:71 final size:71
Alignment explanation
Indices: 80804183--80804346 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80804173 CGATTTGTCT
80804183 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80804248 CTTTCA
66 CTTTCA
80804254 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80804319 CTTTCA
66 CTTTCA
80804325 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80804347 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:80804384 original size:71 final size:70
Alignment explanation
Indices: 80804183--80804380 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
80804173 CGATTTGTCT
* * *
80804183 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
80804248 CTTTCA
65 CTTTCA
* * *
80804254 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
80804319 CTTTCA
65 CTTTCA
* *
80804325 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
80804381 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:80806552 original size:31 final size:30
Alignment explanation
Indices: 80806514--80806580 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
80806504 TCTTAGGTAC
*
80806514 CAAATTAAGAAAAAGTGTCAAGTTCATGTAT
1 CAAATTAA-AAAAAGTGTCAAGTTCACGTAT
** *
80806545 CAAATTAAACCAAGTGTCAAGTTTACGTAT
1 CAAATTAAAAAAAGTGTCAAGTTCACGTAT
80806575 CAAATT
1 CAAATT
80806581 GGATAAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 24 0.75
31 8 0.25
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (30 bp):
CAAATTAAAAAAAGTGTCAAGTTCACGTAT
Found at i:80809270 original size:6 final size:7
Alignment explanation
Indices: 80809231--80809269 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
80809221 AAATTAAATT
80809231 AAATTAAA
1 AAATT-AA
*
80809239 AAATGAA
1 AAATTAA
80809246 GAAATTAA
1 -AAATTAA
80809254 AAATTAA
1 AAATTAA
80809261 AAATTAA
1 AAATTAA
80809268 AA
1 AA
80809270 TAAAATAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 18 0.64
8 10 0.36
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (7 bp):
AAATTAA
Found at i:80812220 original size:40 final size:41
Alignment explanation
Indices: 80812163--80812348 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 41
80812153 TCGAATGATG
* * * *
80812163 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAA
*
80812203 TCCGGACTAAGAT-CCGAAGGCATTTGTAC-GAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTACTAAA
80812243 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTACTAAA
** *
80812283 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTA-AA
* ** *
80812324 -CCGGGCTATTTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
80812349 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
39 1 0.01
40 117 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (41 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAA
Found at i:80814045 original size:40 final size:38
Alignment explanation
Indices: 80813868--80814045 Score: 139
Period size: 40 Copynumber: 4.5 Consensus size: 38
80813858 GAATCACGTA
* * *
80813868 CCTTC-GGATCTTATCCGGATATAGCG-ACTCGCTCAAAAG
1 CCTTCGGGA-CTTACCCGGATAT-G-GTACTCGCACAAATG
* **
80813907 CCTTCGGGACTTAGCCCGGTTATAATAGCTCGCACAAATG
1 CCTTCGGGACTTA-CCCGGATATGGTA-CTCGCACAAATG
* * *
80813947 CCTTCGGGACTTAACCGGATTTGGGAACTCGCACAAATG
1 CCTTCGGGACTTACCCGGATAT-GGTACTCGCACAAATG
*
80813986 CCTTC-GGATCTTACTCCGGATATGGTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTAC-CCGGATATGGT-AC-TCGCACAAATG
80814026 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTA-CCCGGA
80814046 CATCATTCGA
Statistics
Matches: 112, Mismatches: 16, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
38 3 0.03
39 39 0.35
40 58 0.52
41 12 0.11
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (38 bp):
CCTTCGGGACTTACCCGGATATGGTACTCGCACAAATG
Found at i:80821950 original size:40 final size:40
Alignment explanation
Indices: 80821894--80821993 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
80821884 GGATATAGCG
* * * *
80821894 ACTCGCTCAAAAGCCTTCGGGACTTAGCCC-GATTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAAGA
* **
80821934 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAAGA
80821974 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
80821994 ATCTTACTCC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 47 0.92
41 4 0.08
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAAGA
Found at i:80822006 original size:40 final size:39
Alignment explanation
Indices: 80821935--80822046 Score: 120
Period size: 40 Copynumber: 2.8 Consensus size: 39
80821925 ATTATAATAG
*
80821935 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGAA
1 CTCGCACAAATGCCTTC-GGACTTAACCCGGATATGGGAA
**
80821975 CTCGCACAAATGCCTTCGGATCTT-ACTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGA-CTTAAC-CCGGATATGGGAA
* *
80822015 CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTC-GGACTTAACCCGGA
80822047 CATCATTCGA
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
39 5 0.08
40 45 0.73
41 12 0.19
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGACTTAACCCGGATATGGGAA
Found at i:80825490 original size:44 final size:43
Alignment explanation
Indices: 80825424--80825842 Score: 308
Period size: 44 Copynumber: 9.5 Consensus size: 43
80825414 TAACCCATTG
* * ** *
80825424 CAACTTCAGAGG-TATAGGATTTGTCACTTTAATCTATTCCACTT
1 CAACTTCAG-GGAGATAAGATTTGT-ACTTTAATCTGCTCCACTA
* * *
80825468 CAACTTTAGGGAGATTAGATTTGTAGCTTTAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTA-CTTTAATCTGCTCCACTA
* * * *
80825512 CAACTTCAGGGAGATGAGACTTT-T-CTCTTCAATCTACTTCACTG
1 CAACTTCAGGGAGATAAGA-TTTGTACT-TT-AATCTGCTCCACTA
* *
80825556 CAA-TCTCAAGGA-ATAAGATTTGTAACTTCAATCTGCTCCACTA
1 CAACT-TCAGGGAGATAAGATTTGT-ACTTTAATCTGCTCCACTA
* ** * **
80825599 CAATTTCAGGGAGATGTGACTTGTAGCTTTAATCTAATCCACTA
1 CAACTTCAGGGAGATAAGATTTGTA-CTTTAATCTGCTCCACTA
* * *
80825643 CAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGT-ACTTTAATCTGCTCCACTA
* * * *
80825687 CAACTTCAGGGAGATTAGACTCGTAGCTTTAATTTGCTCCACTA
1 CAACTTCAGGGAGATAAGATTTGTA-CTTTAATCTGCTCCACTA
* * * *
80825731 CAACTTTAGGGAGATAAGATTCTCTATCTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATT-TGTA-CTTTAATCTGCTCCACTA
* * * * * * * *
80825776 TAAATTTAGAGAGATAAGATTTGTGGCCTTAATTTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGT-ACTTTAATCTGCTCCACTA
* *
80825820 CAAATTCAGAGAGATAAGATTTG
1 CAACTTCAGGGAGATAAGATTTG
80825843 CCACAATAAC
Statistics
Matches: 304, Mismatches: 55, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
42 5 0.02
43 34 0.11
44 224 0.74
45 41 0.13
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (43 bp):
CAACTTCAGGGAGATAAGATTTGTACTTTAATCTGCTCCACTA
Done.