Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 26 of 433
Found at i:6759754 original size:220 final size:220
Alignment explanation
Indices: 6759317--6759888 Score: 864
Period size: 220 Copynumber: 2.6 Consensus size: 220
6759307 AGATATGACC
* * * * * *
6759317 TTCAGGTGCTTACGCTGAAGCGGATCCAAGATGATTTATCATCTCTGTATTGTCAGAGAAAAAAT
1 TTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCAGAGAACAAAT
* *
6759382 CGAAGAAATAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAGCAATCTAACC
66 CGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAATCTAACC
*
6759447 -TTCATATGTTTTCACATCGAAGTAGATCCAAGACGATTTGGCATCCTTGCATTGACAAGGAGCA
131 TTTCATATGTCTTCACATCGAAGTAGATCCAAGACGATTTGGCATCCTTGCATTGACAAGGAGCA
* * *
6759511 GATCGAAGACATAGTAGATTTGGCT
196 GATCAAAGACATAGCAAATTTGGCT
6759536 TTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGAT-AGAGAACAAA
1 TTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTG-TCAGAGAACAAA
* * *
6759600 TCGAAGAAACAGATTTGACATCTTCC-TATTTGACGGAGAGCAGATCAAAGACATAGCAGATCTA
65 TCGAAGAAACAGATTTGGCATC-TCCATATTCGACGGAGAGCAGATCGAAGACATAGCA-ATCTA
* * *
6759664 ACCTTTGA-ATGTCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGA
128 ACCTTTCATATGTCTTCACATCGAAGTAGATCCAAGACGATTTGGCATCCTTGCATTGACAAGGA
6759728 GCAGATCAAAGACATAGCAAATTTGGCT
193 GCAGATCAAAGACATAGCAAATTTGGCT
* * ** *
6759756 TTCACGTGTTTATGCTAAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAAT
1 TTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCAGAGAACAAAT
*
6759821 CGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAAATCTGAC
66 CGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGC-AATCTAAC
6759886 CTT
130 CTT
6759889 CATTGAAGCA
Statistics
Matches: 319, Mismatches: 27, Indels: 13
0.89 0.08 0.04
Matches are distributed among these distances:
219 109 0.34
220 206 0.65
221 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (220 bp):
TTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCAGAGAACAAAT
CGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAATCTAACC
TTTCATATGTCTTCACATCGAAGTAGATCCAAGACGATTTGGCATCCTTGCATTGACAAGGAGCA
GATCAAAGACATAGCAAATTTGGCT
Found at i:6759939 original size:78 final size:78
Alignment explanation
Indices: 6759831--6760047 Score: 362
Period size: 78 Copynumber: 2.8 Consensus size: 78
6759821 CGAAGAAACA
** * * *
6759831 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
6759896 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
6759909 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
6759974 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
6759987 GATTTGGCATCTCTGTATTATACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
6760048 GTGTTTACAT
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 129 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:6760194 original size:44 final size:44
Alignment explanation
Indices: 6760061--6760206 Score: 143
Period size: 44 Copynumber: 3.3 Consensus size: 44
6760051 TTTACATCGA
* * * * *
6760061 AGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT-GACAGAG
** *
6760106 AGCAAATC-AGAGATAACAGATTTAACATCTCTGTATTGTCAGAG
1 AGCAAATCGA-AGATAACAGATTTGGCATCTCTGTATTGACAGAG
* **
6760150 AACAAATCGAAGA-AACAGATTTGGCATCTCCATATTCGACAGAG
1 AGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT-GACAGAG
*
6760194 AGCAGATCGAAGA
1 AGCAAATCGAAGA
6760207 CATAGCAGAT
Statistics
Matches: 83, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
43 19 0.23
44 32 0.39
45 32 0.39
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (44 bp):
AGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGACAGAG
Found at i:6760499 original size:78 final size:78
Alignment explanation
Indices: 6760387--6760603 Score: 317
Period size: 78 Copynumber: 2.8 Consensus size: 78
6760377 CGAAGAAACA
** * * * *
6760387 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
6760452 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
6760465 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCTAAGACACAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
6760530 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
6760543 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAGCAGATCTGATCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
6760604 GTGTTTACAT
Statistics
Matches: 122, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 122 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:6760620 original size:556 final size:556
Alignment explanation
Indices: 6759568--6760698 Score: 1980
Period size: 556 Copynumber: 2.0 Consensus size: 556
6759558 GATCTAAGAT
*
6759568 GATTTAACATCTCTGTATTGATAGAGAACAAATCGAAGAAACAGATTTGACATCTTCCTATTTGA
1 GATTTAACATCTCTGTATTGATAGAGAACAAATCGAAGAAACAGATTTGACATCTTCCTATTCGA
* *
6759633 CGGAGAGCAGATCAAAGACATAGCAGATCTAACCTTTGAATGTCTTCACATCGAAGTAGATCCAA
66 CAGAGAGCAGATCAAAGACATAGCAGATCTAACCTTAGAATGTCTTCACATCGAAGTAGATCCAA
6759698 GATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCAAAGACATAGCAAATTTGGCTTTCACGT
131 GATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCAAAGACATAGCAAATTTGGCTTTCACGT
*
6759763 GTTTATGCTAAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAA
196 GTTTACGCTAAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAA
6759828 ACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCATT
261 ACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCATT
* *
6759893 GAAGCAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGA
326 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAAA
* *
6759958 TCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTATACGGGGAGCAGATCG
391 TCTGACCTTCATTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGACGGGGAGCAGATCG
6760023 AAGACATAGCAGATCTGACCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGCA
456 AAGACATAGCAGATCTGACCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGCA
6760088 TCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
521 TCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
*
6760124 GATTTAACATCTCTGTATTG-TCAGAGAACAAATCGAAGAAACAGATTTGGCATC-TCCATATTC
1 GATTTAACATCTCTGTATTGAT-AGAGAACAAATCGAAGAAACAGATTTGACATCTTCC-TATTC
*
6760187 GACAGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCAG-ATGTCTTCACATCGAAGTAGATC
64 GACAGAGAGCAGATCAAAGACATAGCAGATCTAACCTT-AGAATGTCTTCACATCGAAGTAGATC
* * *
6760251 CAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACATAGCAGATTTTGCTTTCA
128 CAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCAAAGACATAGCAAATTTGGCTTTCA
* *
6760316 CGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAATAAATCGAA
193 CGTGTTTACGCTAAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAA
* * *
6760381 GAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTT
258 GAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTC
* *
6760446 ATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGTAGATCTAAGACACAGC
323 ATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGC
6760511 AAATCTGACCTTCATTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGACGGGGAGCAGA
388 AAATCTGACCTTCATTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGACGGGGAGCAGA
* *
6760576 TTGAAGACATAGCAGATCTGATCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTG
453 TCGAAGACATAGCAGATCTGACCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTG
*
6760641 GCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
518 GCATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
* **
6760680 AATTTGGCATCTCTGTATT
1 GATTTAACATCTCTGTATT
6760699 AGACGGGGAG
Statistics
Matches: 546, Mismatches: 26, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
555 4 0.01
556 541 0.99
557 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (556 bp):
GATTTAACATCTCTGTATTGATAGAGAACAAATCGAAGAAACAGATTTGACATCTTCCTATTCGA
CAGAGAGCAGATCAAAGACATAGCAGATCTAACCTTAGAATGTCTTCACATCGAAGTAGATCCAA
GATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCAAAGACATAGCAAATTTGGCTTTCACGT
GTTTACGCTAAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAA
ACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCATT
GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAAA
TCTGACCTTCATTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGACGGGGAGCAGATCG
AAGACATAGCAGATCTGACCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGCA
TCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
Found at i:6760700 original size:45 final size:45
Alignment explanation
Indices: 6760544--6760816 Score: 277
Period size: 45 Copynumber: 6.0 Consensus size: 45
6760534 ATCCAAGATA
* *
6760544 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAGCAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACAG
* * * * * *
6760591 ATCT-G-ATCTTCATGTGTTTACATC--GAAGCAGATCCAAGATGACAG
1 ATTTGGCATC-TC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACAG
* * *
6760636 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
* *
6760681 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
* * *
6760725 ATTTAGCGTCTCTGTATTAAACGGGGAGCAGATCGAAGATAACAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
* * * *
6760770 ATTTGGCGTCTCTATATTAGACGGGGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
6760815 AT
1 AT
6760817 ATCGCCTTCC
Statistics
Matches: 185, Mismatches: 32, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
43 1 0.01
44 42 0.23
45 111 0.60
46 6 0.03
47 20 0.11
48 4 0.02
49 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.26
Consensus pattern (45 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
Found at i:6760788 original size:89 final size:90
Alignment explanation
Indices: 6760617--6760816 Score: 278
Period size: 89 Copynumber: 2.2 Consensus size: 90
6760607 TTTACATCGA
* * * *
6760617 AGCAGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAA
1 AGCAGATCAAAGATAG-CAGATTTAGCATCTCTGTATTAAACGGGGAGCAAATCGAAGATAACAA
*
6760681 ATTTGGCATCTCTGTATTAGACGGGG
65 ATTTGGCATCTCTATATTAGACGGGG
** * * *
6760707 AGCAGATTGAAGA-AGCAGATTTAGCGTCTCTGTATTAAACGGGGAGCAGATCGAAGATAACAGA
1 AGCAGATCAAAGATAGCAGATTTAGCATCTCTGTATTAAACGGGGAGCAAATCGAAGATAACAAA
*
6760771 TTTGGCGTCTCTATATTAGACGGGG
66 TTTGGCATCTCTATATTAGACGGGG
6760796 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
6760817 ATCGCCTTCC
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
89 77 0.80
90 19 0.20
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.23
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTAGCATCTCTGTATTAAACGGGGAGCAAATCGAAGATAACAAA
TTTGGCATCTCTATATTAGACGGGG
Found at i:6760788 original size:134 final size:136
Alignment explanation
Indices: 6760543--6760799 Score: 353
Period size: 134 Copynumber: 1.9 Consensus size: 136
6760533 GATCCAAGAT
* * *
6760543 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAGCAGATCTGATCTTCATGTGT
1 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-ATAGCAGATCTGAGCGTCATCTGT
* * *
6760608 TTACATCGAAGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGA
65 TTACAACGAAGCAGATCCAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGGA
6760673 GATAACA
130 GATAACA
*
6760680 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAG-A-AGCAGAT-TTAGCGTC-TCTGTA
1 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGAATAGCAGATCTGAGCGTCATCTGT-
* * *
6760741 TTA-AACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTATATTAGACGGGGAGCA
65 TTACAAC--GAAGCAGATCCAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCA
6760800 GATCAAAGAT
Statistics
Matches: 107, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
132 6 0.06
133 8 0.07
134 53 0.50
135 1 0.01
137 39 0.36
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (136 bp):
AATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGAATAGCAGATCTGAGCGTCATCTGTT
TACAACGAAGCAGATCCAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGGAG
ATAACA
Found at i:6761175 original size:19 final size:19
Alignment explanation
Indices: 6761151--6761241 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
6761141 ATAATCTTCA
6761151 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
6761170 ATGATATGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
*
6761189 ACGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6761206 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6761224 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
6761242 AGATATGATT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 14 0.22
18 16 0.25
19 35 0.54
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:6761267 original size:22 final size:22
Alignment explanation
Indices: 6761151--6761264 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 22
6761141 ATAATCTTCA
6761151 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
6761170 ATGATATGCAATATT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
6761189 ACGATA--CAATCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
6761206 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
6761224 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
6761246 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
6761265 GATTTAATTT
Statistics
Matches: 78, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
17 12 0.15
18 14 0.18
19 32 0.41
22 8 0.10
23 12 0.15
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:6761553 original size:17 final size:17
Alignment explanation
Indices: 6761531--6761564 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
6761521 TGTTTCCCTG
6761531 ATTTTTT-ATATATTTTA
1 ATTTTTTAATA-ATTTTA
6761548 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
6761565 GTATCATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:6763105 original size:127 final size:127
Alignment explanation
Indices: 6762961--6763237 Score: 455
Period size: 127 Copynumber: 2.2 Consensus size: 127
6762951 TCGGGAAATA
* * *
6762961 GTGCCCTATCGTGCTAGGTTTCGATTTCCCGTTTGTTCAAAATAATTGAATATTCCTTTAGAATT
1 GTGCCCTATCATGCTAGGTTTCGATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTGAGAATT
*
6763026 TTACTCGTGTTTTCTAAACCCTAAAACAAGGCAATGTTTGATATTTAGAAATTTAGAGAATC
66 TTACTCGTGTTTTCTAAACCCTAAAACAAGGCAATGTTTGATATTTAGAAATTCAGAGAATC
* *
6763088 GTGCCCTATCATACTAGGTTTCGATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTGATAATT
1 GTGCCCTATCATGCTAGGTTTCGATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTGAGAATT
* * *
6763153 TTACTTGTGTTTTCTAAACCCTAAAACAAGGCAATGTTTGATATTTGGAAATTCGGAGAATC
66 TTACTCGTGTTTTCTAAACCCTAAAACAAGGCAATGTTTGATATTTAGAAATTCAGAGAATC
* *
6763215 GTGCCCTACCATGCTGGGTTTCG
1 GTGCCCTATCATGCTAGGTTTCG
6763238 GTTTTGTGTT
Statistics
Matches: 138, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
127 138 1.00
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (127 bp):
GTGCCCTATCATGCTAGGTTTCGATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTGAGAATT
TTACTCGTGTTTTCTAAACCCTAAAACAAGGCAATGTTTGATATTTAGAAATTCAGAGAATC
Found at i:6763942 original size:25 final size:25
Alignment explanation
Indices: 6763908--6763958 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
6763898 TAAGTGGAAG
6763908 TAAGAAACTATGCTTTCGTGAGGTT
1 TAAGAAACTATGCTTTCGTGAGGTT
6763933 TAAGAAACTATGCTTTCGTGAGGTT
1 TAAGAAACTATGCTTTCGTGAGGTT
6763958 T
1 T
6763959 TCACCTCCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (25 bp):
TAAGAAACTATGCTTTCGTGAGGTT
Found at i:6775823 original size:44 final size:45
Alignment explanation
Indices: 6775714--6775831 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 45
6775704 AATTACAAGT
* * * *
6775714 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCATAT
1 CTTATCTCTCTAAAGTTGCAGTGGAGCAGATCGAAGACAGCATAC
* * *
6775759 CTTATCT-TCCTGAAGTTGCAGTGGAGCAGATCGGAG-CCGCGAT-C
1 CTTATCTCT-CTAAAGTTGCAGTGGAGCAGATCGAAGACAGC-ATAC
* *
6775803 CTTATCTCTCTAAAGGTGCAGTAGAGCAG
1 CTTATCTCTCTAAAGTTGCAGTGGAGCAG
6775832 GATAAAAGAT
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
44 26 0.43
45 34 0.57
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (45 bp):
CTTATCTCTCTAAAGTTGCAGTGGAGCAGATCGAAGACAGCATAC
Found at i:6775870 original size:47 final size:46
Alignment explanation
Indices: 6775819--6775913 Score: 129
Period size: 46 Copynumber: 2.0 Consensus size: 46
6775809 TCTCTAAAGG
*
6775819 TGCAGTAGAGCAGGATAAAAGATACACAAACTTTATCTT-CCTGAAGT
1 TGCAGTAGAGCAGGATAAAA-ATACACAAACCTTAT-TTCCCTGAAGT
* * *
6775866 TGCAGTGGAGCAGGATAAAAATACTCAGACCTTATTTCCCTGAAGT
1 TGCAGTAGAGCAGGATAAAAATACACAAACCTTATTTCCCTGAAGT
6775912 TG
1 TG
6775914 TAGTGGAGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
45 2 0.05
46 22 0.51
47 19 0.44
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (46 bp):
TGCAGTAGAGCAGGATAAAAATACACAAACCTTATTTCCCTGAAGT
Found at i:6775919 original size:46 final size:47
Alignment explanation
Indices: 6775802--6775921 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 47
6775792 GAGCCGCGAT
* * *
6775802 CCTTATC-TCTCTAAAGGTGCAGTAGAGCAGGATAAAAGATACACAAA
1 CCTTATCTTC-CTGAAGTTGCAGTGGAGCAGGATAAAAGATACACAAA
* * *
6775849 CTTTATCTTCCTGAAGTTGCAGTGGAGCAGGATAAAA-ATACTCAGA
1 CCTTATCTTCCTGAAGTTGCAGTGGAGCAGGATAAAAGATACACAAA
*
6775895 CCTTAT-TTCCCTGAAGTTGTAGTGGAG
1 CCTTATCTT-CCTGAAGTTGCAGTGGAG
6775922 AAGTCATGGC
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
45 2 0.03
46 29 0.46
47 30 0.48
48 2 0.03
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (47 bp):
CCTTATCTTCCTGAAGTTGCAGTGGAGCAGGATAAAAGATACACAAA
Found at i:6778770 original size:127 final size:127
Alignment explanation
Indices: 6778613--6778915 Score: 473
Period size: 127 Copynumber: 2.4 Consensus size: 127
6778603 CAAGGTAATA
* * *
6778613 TTTGATGTTTGGAAATTCGGGGAATAGTGCCCTATCGTGCTGAGTTTCGATTTCCTGTTTGTTCA
1 TTTGATATTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGAGTTTCGATTTCCCGTTTGTTCA
* *
6778678 AAATAATTGAATATTCCTTTAGAATTTTACTCGTGTTTTCTAAACCCTAAAACAAGACAATG
66 AAATAATCGAATATTCCTTTAAAATTTTACTCGTGTTTTCTAAACCCTAAAACAAGACAATG
* * * *
6778740 TTTGATATTTAGAAATTCAGGGAATCGTGCCCTATCTTGCT-AGGTTTTGATTTCCCGTTTGTTC
1 TTTGATATTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGA-GTTTCGATTTCCCGTTTGTTC
* *
6778804 AAAATAATCGAATATTCCTTTAAAATTTTACTCGTGTTTTCTAAACCCTAAAATAAGGCAATG
65 AAAATAATCGAATATTCCTTTAAAATTTTACTCGTGTTTTCTAAACCCTAAAACAAGACAATG
* *
6778867 TTTGATATTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTTCG
1 TTTGATATTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGAGTTTCG
6778916 GTTTTTTGTT
Statistics
Matches: 157, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
126 1 0.01
127 156 0.99
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (127 bp):
TTTGATATTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGAGTTTCGATTTCCCGTTTGTTCA
AAATAATCGAATATTCCTTTAAAATTTTACTCGTGTTTTCTAAACCCTAAAACAAGACAATG
Found at i:6779323 original size:43 final size:43
Alignment explanation
Indices: 6779247--6779376 Score: 206
Period size: 43 Copynumber: 3.0 Consensus size: 43
6779237 AAAAATTTGT
* *
6779247 GGCGTTTATTGGAAAAAAACGCCGCTAAAGGTCAAGTCTTTTAGC
1 GGCGTTTGTTGG--AAAAGCGCCGCTAAAGGTCAAGTCTTTTAGC
6779292 GGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCAAGTCTTTTAGC
1 GGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCAAGTCTTTTAGC
* *
6779335 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGCCTTTTAG
1 GGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCAAGTCTTTTAG
6779377 TGCCTCTTTT
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
43 70 0.86
45 11 0.14
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (43 bp):
GGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCAAGTCTTTTAGC
Found at i:6785406 original size:9 final size:9
Alignment explanation
Indices: 6785392--6785517 Score: 128
Period size: 9 Copynumber: 13.6 Consensus size: 9
6785382 ATGTATTAGT
6785392 TAAGTTATG
1 TAAGTTATG
6785401 TAAGTTGTTATG
1 TAA---GTTATG
*
6785413 TACGTTATG
1 TAAGTTATG
6785422 TAAG-TATG
1 TAAGTTATG
*
6785430 TAAATTATG
1 TAAGTTATG
6785439 TAAGTTATG
1 TAAGTTATG
*
6785448 TGAGTTATG
1 TAAGTTATG
6785457 TAAGTGTTATG
1 TAA--GTTATG
*
6785468 TAAATTATG
1 TAAGTTATG
*
6785477 TAAGTTATA
1 TAAGTTATG
*
6785486 TGAGTTATG
1 TAAGTTATG
6785495 TAAGTTATG
1 TAAGTTATG
* *
6785504 TAATTTATT
1 TAAGTTATG
6785513 TAAGT
1 TAAGT
6785518 AATGATCAAT
Statistics
Matches: 96, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
8 7 0.07
9 72 0.75
11 9 0.09
12 8 0.08
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:6785438 original size:38 final size:38
Alignment explanation
Indices: 6785396--6785517 Score: 139
Period size: 38 Copynumber: 3.3 Consensus size: 38
6785386 ATTAGTTAAG
6785396 TTATGTAAGTTGTTATGTACGTTATGTAAG-TATGTAAA
1 TTATGTAAGTTGTTATGTA-GTTATGTAAGTTATGTAAA
6785434 TTATGTAA---GTTATGTGAGTTATGTAAGTGTTATGTAAA
1 TTATGTAAGTTGTTATGT-AGTTATGTAA--GTTATGTAAA
* *
6785472 TTATGTAAGTT-ATATG-AGTTATGTAAGTTATGTAAT
1 TTATGTAAGTTGTTATGTAGTTATGTAAGTTATGTAAA
*
6785508 TTATTTAAGT
1 TTATGTAAGT
6785518 AATGATCAAT
Statistics
Matches: 74, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
35 16 0.22
36 19 0.26
37 1 0.01
38 34 0.46
40 4 0.05
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (38 bp):
TTATGTAAGTTGTTATGTAGTTATGTAAGTTATGTAAA
Found at i:6786060 original size:241 final size:241
Alignment explanation
Indices: 6785637--6786793 Score: 2224
Period size: 241 Copynumber: 4.8 Consensus size: 241
6785627 TGAATATAGT
* *
6785637 ATTTTTTAATATTCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
1 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
6785702 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
66 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
*
6785767 GGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
131 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
*
6785832 CTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTGA
196 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTGA
*
6785878 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAAGGAGGATCCATTATATCTTACAGCT
1 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
6785943 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
66 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
* *
6786008 GGTTAGAGAGAAGGTCAGCTATCGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
131 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
6786073 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTGA
196 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTGA
6786119 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
1 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
6786184 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
66 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
*
6786249 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAATCAAGCTACATGGTAATAAATA
131 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
6786314 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTGA
196 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTGA
6786360 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
1 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
6786425 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
66 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
6786490 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
131 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
6786555 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTGA
196 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTGA
*
6786601 AATTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
1 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
6786666 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
66 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
*
6786731 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAATCTACATGGTAATAAA
131 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
6786794 ATTAATTCAT
Statistics
Matches: 902, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 902 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Consensus pattern (241 bp):
ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAA
GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTGA
Found at i:6787352 original size:2 final size:2
Alignment explanation
Indices: 6787345--6787381 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
6787335 ATACAATAAC
6787345 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6787382 ACAATTTGAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6789482 original size:14 final size:15
Alignment explanation
Indices: 6789458--6789487 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
6789448 CACAAACTTC
6789458 AGAATTTATGTATTT
1 AGAATTTATGTATTT
6789473 AGAA-TTATGTATTT
1 AGAATTTATGTATTT
6789487 A
1 A
6789488 TATAAACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
AGAATTTATGTATTT
Found at i:6790807 original size:22 final size:22
Alignment explanation
Indices: 6790776--6790825 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
6790766 AAATTAAATT
* *
6790776 ATATTGAATAATTATTATTTAA
1 ATATTTAATAATTAATATTTAA
*
6790798 ATATTTAATATTTAATATTTAA
1 ATATTTAATAATTAATATTTAA
6790820 AT-TTTA
1 ATATTTA
6790826 GGTAAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
ATATTTAATAATTAATATTTAA
Found at i:6790809 original size:7 final size:7
Alignment explanation
Indices: 6790776--6790823 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
6790766 AAATTAAATT
*
6790776 ATATTGA
1 ATATTTA
*
6790783 ATAATTA
1 ATATTTA
*
6790790 TTATTTAA
1 ATATTT-A
6790798 ATATTTA
1 ATATTTA
6790805 ATATTTA
1 ATATTTA
6790812 ATATTTA
1 ATATTTA
6790819 A-ATTT
1 ATATTT
6790824 TAGGTAAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
6 4 0.11
7 25 0.71
8 6 0.17
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (7 bp):
ATATTTA
Found at i:6791868 original size:40 final size:40
Alignment explanation
Indices: 6791815--6792068 Score: 170
Period size: 41 Copynumber: 6.5 Consensus size: 40
6791805 TTTTGCCGCG
*
6791815 TTTGGACCAAAAAAGCCGCTATTAATCAGTTTTTAGTGGCGT
1 TTTGGA-C-AAAAAGCCGCTATTGATCAGTTTTTAGTGGCGT
* * * *
6791857 TTTGGATAAAAACGCCACAATTGATCAGTTTTTTGTGGCGT
1 TTTGGACAAAAA-GCCGCTATTGATCAGTTTTTAGTGGCGT
*
6791898 TTTGGACAAAAA--CGC-A--G--CA--ATTTAGTGGCGT
1 TTTGGACAAAAAGCCGCTATTGATCAGTTTTTAGTGGCGT
** * * *
6791929 TTGAGATTAAAACGCCGCTATTGATCAGCTTTTAGTGGCGT
1 TTTGGA-CAAAAAGCCGCTATTGATCAGTTTTTAGTGGCGT
* * *
6791970 TTTGAGA-AAAACGCCGCTATTGACCAGTTTTTAGTGGTGT
1 TTTG-GACAAAAAGCCGCTATTGATCAGTTTTTAGTGGCGT
* * * * * * *
6792010 TTTTGCCAAAAACGCCGCTATAGTTTAGCTTTTAATGGCGT
1 TTTGGACAAAAA-GCCGCTATTGATCAGTTTTTAGTGGCGT
* *
6792051 TTCGGAC-AAACGCCGCTA
1 TTTGGACAAAAAGCCGCTA
6792069 ATGTATATTA
Statistics
Matches: 165, Mismatches: 33, Indels: 31
0.72 0.14 0.14
Matches are distributed among these distances:
31 14 0.08
32 4 0.02
33 2 0.01
34 3 0.02
35 2 0.01
37 2 0.01
38 2 0.01
39 10 0.06
40 45 0.27
41 73 0.44
42 8 0.05
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (40 bp):
TTTGGACAAAAAGCCGCTATTGATCAGTTTTTAGTGGCGT
Found at i:6791868 original size:41 final size:41
Alignment explanation
Indices: 6791823--6792030 Score: 186
Period size: 41 Copynumber: 5.3 Consensus size: 41
6791813 CGTTTGGACC
* *
6791823 AAAAAAGCCGCTATTAATCAGTTTTTAGTGGCGTTTTGGAT
1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGAT
* * * *
6791864 AAAAACGCCACAATTGATCAGTTTTTTGTGGCGTTTTGGAC
1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGAT
* **
6791905 AAAAA---CGC-A--G--CA--ATTTAGTGGCGTTTGAGAT
1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGAT
* * *
6791936 TAAAACGCCGCTATTGATCAGCTTTTAGTGGCGTTTT-GAG
1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGAT
* * * **
6791976 AAAAACGCCGCTATTGACCAGTTTTTAGTGGTGTTTTTGCC
1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGAT
6792017 AAAAACGCCGCTAT
1 AAAAACGCCGCTAT
6792031 AGTTTAGCTT
Statistics
Matches: 134, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
31 18 0.13
33 2 0.01
34 3 0.02
35 2 0.01
37 2 0.01
38 2 0.01
39 2 0.01
40 35 0.26
41 68 0.51
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (41 bp):
AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGAT
Found at i:6791967 original size:72 final size:71
Alignment explanation
Indices: 6791846--6791983 Score: 197
Period size: 72 Copynumber: 1.9 Consensus size: 71
6791836 TTAATCAGTT
* *
6791846 TTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGTTTTTTGTGGCGTTTTGGACAAAAAC
1 TTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTTT-GACAAAAAC
6791911 GCAGCAA
65 GCAGCAA
* * * *
6791918 TTTAGTGGCG-TTTGAGATTAAAACGCCGCTATTGATCAGCTTTTAGTGGCGTTTTGAGAAAAAC
1 TTTAGTGGCGTTTTG-GATAAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTTTGACAAAAAC
6791982 GC
65 GC
6791984 CGCTATTGAC
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
71 14 0.24
72 45 0.76
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (71 bp):
TTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTTTGACAAAAACG
CAGCAA
Found at i:6792118 original size:12 final size:12
Alignment explanation
Indices: 6792096--6792124 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
6792086 CGTTTTTTGT
6792096 TAAAA-CGCCAC
1 TAAAAGCGCCAC
6792107 TAAAAGCGCCAC
1 TAAAAGCGCCAC
6792119 TAAAAG
1 TAAAAG
6792125 TCTATTTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.48, C:0.28, G:0.14, T:0.10
Consensus pattern (12 bp):
TAAAAGCGCCAC
Found at i:6803451 original size:127 final size:127
Alignment explanation
Indices: 6803301--6803628 Score: 392
Period size: 128 Copynumber: 2.6 Consensus size: 127
6803291 TATTTAGTCC
* * * * * **
6803301 AACGAAAAACCGAAACCCAGCACGGTCGGGCACGATTCCTCAAACTTCCAAACATTGAACATTGC
1 AACGAGAAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACATTGC
* * * *
6803366 TTTGTTTTAGAATTT-ACAGAATACGAATAAAATTCTAAAGGAATATTCGACTATTTTGAACA
66 CTTG-TTTAGAATTTGAAAAAACACGAATAAAATTCTAAAGGAATATTCGACTATTTTGAACA
* *
6803428 AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCC-CTGAATTTCCAAACATCAAACTTTG
1 AACGAGAAATCGAAACCCAGCACGGTAGGGCACGATTCCTC-GAATTTCCAAACATCAAACATTG
* * * * *
6803492 CCTTGTTTAGAATTTGGAAAAAACACGAGTGAAATTCTAAAGGAATATTTGATTATTTTGTACA
65 CCTTGTTTAGAATTT-GAAAAAACACGAATAAAATTCTAAAGGAATATTCGACTATTTTGAACA
* * **
6803556 AACGGGAAATCGAGACCCAGCACGGTAGGGCACGATTTTTCGAATTTCCAAACATCAAA-ACTTG
1 AACGAGAAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACA-TTG
6803620 CCTTCGTTT
65 CCTT-GTTT
6803629 TAAGGAATTC
Statistics
Matches: 171, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
126 11 0.06
127 57 0.33
128 98 0.57
129 5 0.03
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (127 bp):
AACGAGAAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACATTGC
CTTGTTTAGAATTTGAAAAAACACGAATAAAATTCTAAAGGAATATTCGACTATTTTGAACA
Found at i:6804703 original size:12 final size:12
Alignment explanation
Indices: 6804675--6804708 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6804665 ACTAATGTAA
*
6804675 AAAATATTTATAT
1 AAAATA-TTATAC
6804688 AAAATATTATAC
1 AAAATATTATAC
6804700 AAAATATTA
1 AAAATATTA
6804709 AAACGATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (12 bp):
AAAATATTATAC
Found at i:6808976 original size:26 final size:26
Alignment explanation
Indices: 6808940--6809047 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
6808930 TGAAATTCCA
6808940 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
6808966 ATCATAGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
6808992 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
6809018 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
6809044 ATCA
1 ATCA
6809048 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:6816333 original size:46 final size:46
Alignment explanation
Indices: 6816281--6816645 Score: 498
Period size: 46 Copynumber: 8.0 Consensus size: 46
6816271 GCTTTCTGAA
* *
6816281 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
6816327 ATGAAAT-TGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
6816372 ATGAAACGTGTAAGACCATGATTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
6816418 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
6816464 ATGAAATGAACAAGACCATGGTTGAAAAATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
6816510 GGGAAATGAATAAGACCATGGTTGAAAGATACTATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
6816556 ATGAAATGAACAAGACCATAGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
6816602 AGGAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
6816646 TCAAAGATAA
Statistics
Matches: 291, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 44 0.15
46 247 0.85
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:6831561 original size:20 final size:20
Alignment explanation
Indices: 6831533--6831574 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
6831523 TTCTTACCGG
*
6831533 ATAATTATGTAATTAATAAA
1 ATAACTATGTAATTAATAAA
*
6831553 ATAACTATGTAATTAATCAA
1 ATAACTATGTAATTAATAAA
6831573 AT
1 AT
6831575 TTAATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (20 bp):
ATAACTATGTAATTAATAAA
Found at i:6832006 original size:20 final size:19
Alignment explanation
Indices: 6831964--6832012 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
6831954 CCATTCATGT
*
6831964 TATT-TTTAAATTTTTTTA
1 TATTATTTAAATTTTTATA
6831982 TATTATTTAAATTTTTATA
1 TATTATTTAAATTTTTATA
6832001 TAATTATCTTAA
1 T-ATTAT-TTAA
6832013 TATATTATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 4 0.15
19 14 0.52
20 5 0.19
21 4 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TATTATTTAAATTTTTATA
Found at i:6842816 original size:148 final size:148
Alignment explanation
Indices: 6842548--6842846 Score: 571
Period size: 148 Copynumber: 2.0 Consensus size: 148
6842538 CGTTTCTTCA
6842548 GTAAGAATGGCATGAATCCGATTTTGTCTCCCCCTATCCACAACCTTTATTAGCGTTTTCCTTCT
1 GTAAGAATGGCATGAATCCGATTTTGTCTCCCCCTATCCACAACCTTTATTAGCGTTTTCCTTCT
6842613 TTTTTACAGATTCAATCCAACTCCCTTTCTTTTTCTTTTAAGATCATCTTCTCTTTCATCACCTC
66 TTTTTACAGATTCAATCCAACTCCCTTTCTTTTTCTTTTAAGATCATCTTCTCTTTCATCACCTC
6842678 CTAGCTAGGTTCAAACAG
131 CTAGCTAGGTTCAAACAG
*
6842696 GTAAGAATGGCATGAATCCGGTTTTGTCTCCCCCTATCCACAACCTTTATTAGCGTTTTCCTTCT
1 GTAAGAATGGCATGAATCCGATTTTGTCTCCCCCTATCCACAACCTTTATTAGCGTTTTCCTTCT
*
6842761 TTTTTACAGATTCAATCCAACTCCCTTTCTTTTTCTTTTAAGATCATTTTCTCTTTCATCACCTC
66 TTTTTACAGATTCAATCCAACTCCCTTTCTTTTTCTTTTAAGATCATCTTCTCTTTCATCACCTC
*
6842826 CTAGCTATGTTCAAACAG
131 CTAGCTAGGTTCAAACAG
6842844 GTA
1 GTA
6842847 GGCATTCGAT
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 148 1.00
ACGTcount: A:0.22, C:0.27, G:0.10, T:0.40
Consensus pattern (148 bp):
GTAAGAATGGCATGAATCCGATTTTGTCTCCCCCTATCCACAACCTTTATTAGCGTTTTCCTTCT
TTTTTACAGATTCAATCCAACTCCCTTTCTTTTTCTTTTAAGATCATCTTCTCTTTCATCACCTC
CTAGCTAGGTTCAAACAG
Found at i:6843348 original size:4 final size:4
Alignment explanation
Indices: 6843339--6843367 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
6843329 GAATGGCAAA
6843339 TTAT TTAT TTAT TTAT TTAT TTA- TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
6843368 CAAGTCTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:6854269 original size:30 final size:30
Alignment explanation
Indices: 6854233--6854292 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
6854223 TATTTTATTA
* *
6854233 TTAATTTTGTTTTTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
6854263 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
6854293 CTTGTTAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.02, G:0.13, T:0.60
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:6857013 original size:25 final size:25
Alignment explanation
Indices: 6856985--6857057 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
6856975 AGCTAATATG
6856985 TATGATTAGGTAATATAATGGTATA
1 TATGATTAGGTAATATAATGGTATA
*
6857010 TATGA-T--GT-AT-TAA---TATG
1 TATGATTAGGTAATATAATGGTATA
6857027 TATGATTAGGTAATATAATGGTATA
1 TATGATTAGGTAATATAATGGTATA
6857052 TATGAT
1 TATGAT
6857058 GTAATATACT
Statistics
Matches: 38, Mismatches: 2, Indels: 16
0.68 0.04 0.29
Matches are distributed among these distances:
17 8 0.21
18 1 0.03
20 5 0.13
21 4 0.11
22 5 0.13
24 1 0.03
25 14 0.37
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.42
Consensus pattern (25 bp):
TATGATTAGGTAATATAATGGTATA
Found at i:6857025 original size:42 final size:42
Alignment explanation
Indices: 6856978--6857060 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
6856968 GTGTTTAAGC
6856978 TAATATGTATGATTAGGTAATATAATGGTATATATGATGTAT
1 TAATATGTATGATTAGGTAATATAATGGTATATATGATGTAT
6857020 TAATATGTATGATTAGGTAATATAATGGTATATATGATGTA
1 TAATATGTATGATTAGGTAATATAATGGTATATATGATGTA
6857061 ATATACTATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (42 bp):
TAATATGTATGATTAGGTAATATAATGGTATATATGATGTAT
Found at i:6859501 original size:23 final size:23
Alignment explanation
Indices: 6859470--6859517 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
6859460 GGCGTTACAG
*
6859470 AATACGCCACATAGGCATCACAA
1 AATACGCCACAAAGGCATCACAA
* * *
6859493 AATATGCCACAAAGGCTTTACAA
1 AATACGCCACAAAGGCATCACAA
6859516 AA
1 AA
6859518 CATTACGTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (23 bp):
AATACGCCACAAAGGCATCACAA
Found at i:6861211 original size:23 final size:24
Alignment explanation
Indices: 6861178--6861223 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
6861168 TTTTTAAAAG
6861178 ATAAAGTGTGATGTTATAAGAAAT
1 ATAAAGTGTGATGTTATAAGAAAT
*
6861202 ATAAA-TGTGATGTTGTAAGAAA
1 ATAAAGTGTGATGTTATAAGAAA
6861224 CCATGAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.46, C:0.00, G:0.22, T:0.33
Consensus pattern (24 bp):
ATAAAGTGTGATGTTATAAGAAAT
Found at i:6862137 original size:13 final size:13
Alignment explanation
Indices: 6862115--6862146 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
6862105 CCCAATTTAT
6862115 AATG-TGAAAACA
1 AATGATGAAAACA
6862127 AATGATGAAAACA
1 AATGATGAAAACA
6862140 AATGATG
1 AATGATG
6862147 GGCACATAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (13 bp):
AATGATGAAAACA
Found at i:6863453 original size:25 final size:25
Alignment explanation
Indices: 6863425--6863474 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
6863415 TTGTGTGTTC
6863425 AATTTCTCAATTTATTCTGCTATTT
1 AATTTCTCAATTTATTCTGCTATTT
6863450 AATTTCTCAATTTATTCTGCTATTT
1 AATTTCTCAATTTATTCTGCTATTT
6863475 TCTTGTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.04, T:0.56
Consensus pattern (25 bp):
AATTTCTCAATTTATTCTGCTATTT
Found at i:6870810 original size:18 final size:18
Alignment explanation
Indices: 6870768--6870803 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
6870758 AAAATACACG
* *
6870768 AATAATTTAAGTATATAT
1 AATAAATTAAATATATAT
6870786 AATAAATTAAATATATAT
1 AATAAATTAAATATATAT
6870804 TAAAAATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
AATAAATTAAATATATAT
Found at i:6871199 original size:13 final size:13
Alignment explanation
Indices: 6871181--6871206 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6871171 GGCGGAGCAG
6871181 GTGCACCCGCCTA
1 GTGCACCCGCCTA
6871194 GTGCACCCGCCTA
1 GTGCACCCGCCTA
6871207 TCTACTCGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.46, G:0.23, T:0.15
Consensus pattern (13 bp):
GTGCACCCGCCTA
Found at i:6871382 original size:16 final size:16
Alignment explanation
Indices: 6871361--6871393 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6871351 ACTTTTGTAA
6871361 TTTTTTCGGA-TTTGGG
1 TTTTTT-GGAGTTTGGG
6871377 TTTTTTGGAGTTTGGG
1 TTTTTTGGAGTTTGGG
6871393 T
1 T
6871394 GGGTTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.06, C:0.03, G:0.33, T:0.58
Consensus pattern (16 bp):
TTTTTTGGAGTTTGGG
Found at i:6874702 original size:132 final size:132
Alignment explanation
Indices: 6874535--6874785 Score: 346
Period size: 132 Copynumber: 1.9 Consensus size: 132
6874525 AGTATGAGTA
* * *
6874535 AAATTCTAAAGGAATCTTCGATCATTTTGGACAAAC-AGGAAATCGCTACCCAGCACGATAGGGC
1 AAATTCAAAAGGAACCTTCGATCATTTTGGACAAACGA-GAAATCGCAACCCAGCACGATAGGGC
* *
6874599 ACGATTCCCCGAATTGCCAAACATCGAATATTACCTTCGTTTTG-AAGAGTTTTTAGAAAATATA
65 ACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCGTTTTGAAAG-GTTTTTAGAAAATATA
6874663 AGTG
129 AGTG
* * * *
6874667 AAATTCAAAAGGGACCTTCGATTATTTT-GAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGC
1 AAATTCAAAAGGAACCTTCGATCATTTTGGA-CAAACGAGAAATCGCAACCCAGCACGATAGGGC
* * *
6874731 ACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCGTTTTGAAAGGTTTTTA
65 ACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCGTTTTGAAAGGTTTTTA
6874786 AATGAATAAT
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
131 2 0.02
132 98 0.94
133 4 0.04
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (132 bp):
AAATTCAAAAGGAACCTTCGATCATTTTGGACAAACGAGAAATCGCAACCCAGCACGATAGGGCA
CGATTCCCCGAATTGCCAAACATCGAACATCACCTTCGTTTTGAAAGGTTTTTAGAAAATATAAG
TG
Found at i:6875141 original size:14 final size:14
Alignment explanation
Indices: 6875122--6875151 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6875112 AACACGACAC
6875122 AAAAATAATGGACT
1 AAAAATAATGGACT
*
6875136 AAAAATGATGGACT
1 AAAAATAATGGACT
6875150 AA
1 AA
6875152 CAGTCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (14 bp):
AAAAATAATGGACT
Found at i:6875491 original size:2 final size:2
Alignment explanation
Indices: 6875484--6875517 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
6875474 TCATAAATTT
*
6875484 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6875518 AATAAACTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6896495 original size:93 final size:94
Alignment explanation
Indices: 6896288--6896512 Score: 267
Period size: 93 Copynumber: 2.4 Consensus size: 94
6896278 AAGTGCTTTA
* * * * *
6896288 GTTTGGGACCCTGTTGATCCATTGAAATCATTAAAAGACACGTCACTGCATCTTCACTAAATTAA
1 GTTTTGGACTCTGTTGATCCATTGAAAACATTAAAAGACACATCAC--CATCTTCACTAAATAAA
*
6896353 GGTTCAAGAGGAAGTGCTTCAGTTTGGTTTG
64 GGTTCAAGAGGAAGCGCTTCAGTTTGGTTTG
** * * *
6896384 GTTTTGGACTCCATTGATCCTTTGAAAACATTAAAAGATACATCA-CATCTTCACTAGATAAAGG
1 GTTTTGGACTCTGTTGATCCATTGAAAACATTAAAAGACACATCACCATCTTCACTAAATAAAGG
*
6896448 TTCATA-AGGAAGCGCTTCAGTTTGGTTTT
66 TTCA-AGAGGAAGCGCTTCAGTTTGGTTTG
* * *
6896477 GTTTTGGACTCTGCTGATCCCTTGAAAGCA-TAAAAG
1 GTTTTGGACTCTGTTGATCCATTGAAAACATTAAAAG
6896513 GCGCATCGCA
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
92 6 0.05
93 67 0.60
94 1 0.01
96 37 0.33
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (94 bp):
GTTTTGGACTCTGTTGATCCATTGAAAACATTAAAAGACACATCACCATCTTCACTAAATAAAGG
TTCAAGAGGAAGCGCTTCAGTTTGGTTTG
Found at i:6896781 original size:15 final size:15
Alignment explanation
Indices: 6896761--6896791 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6896751 TCGCTAAACA
6896761 GTTCATGTTTGAAAG
1 GTTCATGTTTGAAAG
*
6896776 GTTCATGTTTGGAAG
1 GTTCATGTTTGAAAG
6896791 G
1 G
6896792 ACAACTAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.32, T:0.39
Consensus pattern (15 bp):
GTTCATGTTTGAAAG
Found at i:6898834 original size:6 final size:6
Alignment explanation
Indices: 6898823--6898852 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
6898813 AGCTGAACCC
6898823 TATATT TATATT TATATT TATATT TATATT
1 TATATT TATATT TATATT TATATT TATATT
6898853 ATCTTAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TATATT
Found at i:6898863 original size:18 final size:17
Alignment explanation
Indices: 6898824--6898870 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
6898814 GCTGAACCCT
*
6898824 ATATTTATATTTATATTT
1 ATATTTATA-TTATATTA
*
6898842 ATATTTATATTATCTTAA
1 ATATTTATATTATATT-A
6898860 ATATTTA-ATTA
1 ATATTTATATTA
6898871 AATAATCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
ATATTTATATTATATTA
Found at i:6903779 original size:44 final size:47
Alignment explanation
Indices: 6903724--6903830 Score: 125
Period size: 46 Copynumber: 2.3 Consensus size: 47
6903714 GCCATATTCC
6903724 AGACATGGTCTTACACTGACATATC-TCGT-A-GCCGATGCATGT-CCT
1 AGACAT-GTCTTACACTGACATA-CGTCGTAAGGCCGATGCATGTCCCT
*** *
6903769 AGACATGTCTTACACTGGTTTACGTCTTAAGGCCGATGCATGTCCCT
1 AGACATGTCTTACACTGACATACGTCGTAAGGCCGATGCATGTCCCT
6903816 -GACATGTCTTACACT
1 AGACATGTCTTACACT
6903831 AGCACTTGTC
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
43 1 0.02
44 16 0.30
45 7 0.13
46 27 0.50
47 3 0.06
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (47 bp):
AGACATGTCTTACACTGACATACGTCGTAAGGCCGATGCATGTCCCT
Found at i:6903842 original size:46 final size:46
Alignment explanation
Indices: 6903754--6903927 Score: 145
Period size: 46 Copynumber: 3.7 Consensus size: 46
6903744 ATATCTCGTA
* **
6903754 GCCGATGCATGTCCTAGACATGTCTTACACT-G-GTTTACGTCTTAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTT--GTCTTAAG
* *
6903800 GCCGATGCATGTCCCTGACATGTCTTACACTAGCACTTGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTTGTCTTAAG
* * * * * ** ** **
6903846 GCTGTTGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTTGTCTTAAG
*
6903894 GCCGATGCATGTTCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
6903928 TCACGCAAGT
Statistics
Matches: 101, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
46 53 0.52
47 25 0.25
48 23 0.23
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTTGTCTTAAG
Found at i:6908869 original size:46 final size:46
Alignment explanation
Indices: 6908812--6909085 Score: 424
Period size: 46 Copynumber: 6.0 Consensus size: 46
6908802 TTTGACATGA
* * * * *
6908812 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
6908858 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
6908904 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
6908950 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
**
6908996 TGCCATGGTATCTTTCAACCATGGTCTTACATTTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
6909042 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
6909086 AGAGCACACT
Statistics
Matches: 211, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 207 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:6911229 original size:11 final size:11
Alignment explanation
Indices: 6911213--6911260 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
6911203 CTTTATATAC
6911213 TAATAAAATAA
1 TAATAAAATAA
*
6911224 TAATAAAATATCT
1 TAATAAAATA--A
* *
6911237 TATTAAAATAT
1 TAATAAAATAA
6911248 TAATAAAATAA
1 TAATAAAATAA
6911259 TA
1 TA
6911261 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:6916521 original size:39 final size:39
Alignment explanation
Indices: 6916465--6916737 Score: 424
Period size: 39 Copynumber: 7.0 Consensus size: 39
6916455 CAAGACACTA
*
6916465 GAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* * *
6916504 GGAATGTATCCAGGCTAAAATCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
6916543 GAAATGTATCCGAGCTAAAGTCCTGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
6916582 GAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
6916621 GAAATGTATCCGGGCTAAAGTCCC-CAGACTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
6916659 GAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTT
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
6916698 GAAATGTAT-CGGAGCTAAAGTCCCGCAGGCTTTGTGCTG
1 GAAATGTATCCGG-GCTAAAGTCCCGCAGGCTTCGTGCTG
6916737 G
1 G
6916738 TAATATAATT
Statistics
Matches: 212, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
38 39 0.18
39 173 0.82
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:6916715 original size:116 final size:117
Alignment explanation
Indices: 6916465--6916737 Score: 424
Period size: 116 Copynumber: 2.3 Consensus size: 117
6916455 CAAGACACTA
* *
6916465 GAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCTGGGAATGTATCCAGGCTAAAATCCCGC
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCAGGCTAAAATCCCGC
* * *
6916530 AGGCTTCGTGCTGGAAATGTATCCGAGCTAAAGTCCTGCAGGCTTCGTGCTG
66 AGACTTCGTGCTGGAAATATATCCGAGCTAAAGTCCCGCAGGCTTCGTGCTG
* * *
6916582 GAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCC-C
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCAGGCTAAAATCCCGC
* *
6916646 AGACTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTT
66 AGACTTCGTGCTGGAAATATATCCGAGCTAAAGTCCCGCAGGCTTCGTGCTG
*
6916698 GAAATGTAT-CGGAGCTAAAGTCCCGCAGGCTTTGTGCTGG
1 GAAATGTATCCGG-GCTAAAGTCCCGCAGGCTTCGTGCTGG
6916738 TAATATAATT
Statistics
Matches: 143, Mismatches: 12, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
115 3 0.02
116 82 0.57
117 58 0.41
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (117 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCAGGCTAAAATCCCGC
AGACTTCGTGCTGGAAATATATCCGAGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:6919525 original size:42 final size:42
Alignment explanation
Indices: 6919462--6919588 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
6919452 CTCCGTTTTC
** * *
6919462 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
6919505 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
6919546 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
6919587 TC
1 TC
6919589 TCACTGATGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 10 0.13
42 64 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:6919723 original size:31 final size:31
Alignment explanation
Indices: 6919688--6919836 Score: 237
Period size: 31 Copynumber: 4.8 Consensus size: 31
6919678 CTTATCACTT
*
6919688 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
6919719 GTAGCCGGAGCTACCATTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
6919750 GTAGCC-AGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
6919781 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
6919812 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
6919837 TGTCATTTGT
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
31 106 0.99
32 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:6919916 original size:50 final size:50
Alignment explanation
Indices: 6919812--6919988 Score: 309
Period size: 50 Copynumber: 3.5 Consensus size: 50
6919802 CACTGATCAG
* *
6919812 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
6919863 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
6919913 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
6919963 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
6919989 ATTGCCATGG
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
50 96 0.80
51 24 0.20
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:6922337 original size:46 final size:45
Alignment explanation
Indices: 6922212--6922423 Score: 128
Period size: 46 Copynumber: 4.6 Consensus size: 45
6922202 GTGTCGACGC
* * *
6922212 CATGTCCTAGACATGGTCTTACACTA--ACACATCTCGTA-GCTGATG
1 CATGTCC-AAACAT-GTCTTACACTAGCACTCATCTCG-AGGCCGATG
* * * *
6922257 CATGTCCCAGACATGTCTTACCCTAGC-TTACGTCTCGAGGCCGATG
1 CATGT-CCAAACATGTCTTACACTAGCACT-CATCTCGAGGCCGATG
* * ** * *
6922303 CATGTCCTTAACATGTCTTACACTAGCACTCGTCTTAATGCCGTTG
1 CATGTCC-AAACATGTCTTACACTAGCACTCATCTCGAGGCCGATG
* * * * *
6922349 CCATGTCCCAAACATGGTCTTATACTGGCTCTCATAAT-GTGGCCGATG
1 -CATGT-CCAAACAT-GTCTTACACTAGCACTCAT-CTCGAGGCCGATG
6922397 CATGTCCCAAACATGTCTTACACTAGC
1 CATGT-CCAAACATGTCTTACACTAGC
6922424 TCACGCAAGT
Statistics
Matches: 131, Mismatches: 25, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
44 10 0.08
45 14 0.11
46 58 0.44
47 25 0.19
48 23 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
CATGTCCAAACATGTCTTACACTAGCACTCATCTCGAGGCCGATG
Found at i:6927904 original size:13 final size:13
Alignment explanation
Indices: 6927886--6927910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6927876 AATACGACTT
6927886 TAAAAATATTTAA
1 TAAAAATATTTAA
6927899 TAAAAATATTTA
1 TAAAAATATTTA
6927911 TGGCCTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAAAAATATTTAA
Found at i:6928291 original size:30 final size:30
Alignment explanation
Indices: 6928255--6928315 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
6928245 TTGTAAAGAG
6928255 TATACAATAAGGAGTTTTCCACCATGATAC
1 TATACAATAAGGAGTTTTCCACCATGATAC
6928285 TATACAATAAGGAGTTTTCCACCATGATAC
1 TATACAATAAGGAGTTTTCCACCATGATAC
6928315 T
1 T
6928316 TCTTGTGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (30 bp):
TATACAATAAGGAGTTTTCCACCATGATAC
Found at i:6930021 original size:62 final size:59
Alignment explanation
Indices: 6929944--6930061 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 59
6929934 AAGTGATTAT
* * * *
6929944 TTTAATATTAAATTTAATT-TATTATTTATCTTGTAGATAAATATTCTATTTATTTAATAAGA
1 TTTAATATTAAATTT-ATTATAATATTTATC---AAGATAAATATTATATTAATTTAATAAGA
*
6930006 TTTAATATTATATTTATTATAATATTTATCAAGATAAATATTATATTAATTTAATA
1 TTTAATATTAAATTTATTATAATATTTATCAAGATAAATATTATATTAATTTAATA
6930062 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
59 23 0.46
61 3 0.06
62 24 0.48
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (59 bp):
TTTAATATTAAATTTATTATAATATTTATCAAGATAAATATTATATTAATTTAATAAGA
Found at i:6930211 original size:25 final size:26
Alignment explanation
Indices: 6930170--6930218 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
6930160 AGTTTTAGAG
6930170 AGAAAATTCTCTGAAGAGATTATTTT
1 AGAAAATTCTCTGAAGAGATTATTTT
*
6930196 AGAAAATT-TCTGAAGATATTATT
1 AGAAAATTCTCTGAAGAGATTATT
6930219 CTTATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.41, C:0.06, G:0.14, T:0.39
Consensus pattern (26 bp):
AGAAAATTCTCTGAAGAGATTATTTT
Found at i:6935295 original size:21 final size:24
Alignment explanation
Indices: 6935269--6935312 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
6935259 TTCTATGCCA
6935269 TATCTA-TA-ATTA-ATTTTTCAT
1 TATCTATTAGATTAGATTTTTCAT
6935290 TATCTATTAGATTAGATTTTTCA
1 TATCTATTAGATTAGATTTTTCA
6935313 AATTTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 2 0.10
23 4 0.20
24 8 0.40
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.55
Consensus pattern (24 bp):
TATCTATTAGATTAGATTTTTCAT
Found at i:6935320 original size:23 final size:23
Alignment explanation
Indices: 6935270--6935321 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
6935260 TCTATGCCAT
*
6935270 ATCTA-TA-ATTAATTTTTCATT
1 ATCTATTAGATTAATTTTTCATA
6935291 ATCTATTAGATTAGATTTTTCA-A
1 ATCTATTAGATTA-ATTTTTCATA
*
6935314 ATTTATTA
1 ATCTATTA
6935322 TGAATGTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 5 0.19
22 2 0.08
23 11 0.42
24 8 0.31
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.54
Consensus pattern (23 bp):
ATCTATTAGATTAATTTTTCATA
Found at i:6936823 original size:20 final size:22
Alignment explanation
Indices: 6936784--6936825 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6936774 TAATCTAAAT
*
6936784 TTATTATTAAATATTTTTATCA
1 TTATAATTAAATATTTTTATCA
6936806 TTATAATTAAA-A-TTTTATCA
1 TTATAATTAAATATTTTTATCA
6936826 ATACATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 1 0.05
22 10 0.53
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (22 bp):
TTATAATTAAATATTTTTATCA
Found at i:6939449 original size:19 final size:18
Alignment explanation
Indices: 6939427--6939465 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
6939417 CTGTAACATT
6939427 TAAAAAATGTTATAATTTG
1 TAAAAAAT-TTATAATTTG
* *
6939446 TAAAATATTTATAGTTTG
1 TAAAAAATTTATAATTTG
6939464 TA
1 TA
6939466 TTATAATCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (18 bp):
TAAAAAATTTATAATTTG
Found at i:6941741 original size:11 final size:11
Alignment explanation
Indices: 6941725--6941751 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
6941715 ATTTTGTATA
6941725 ATATTTAATTT
1 ATATTTAATTT
6941736 ATATTTAATTT
1 ATATTTAATTT
6941747 ATATT
1 ATATT
6941752 AATACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
ATATTTAATTT
Found at i:6943976 original size:22 final size:22
Alignment explanation
Indices: 6943948--6943989 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
6943938 ATAAGCTCCT
* *
6943948 TTACATTCAATTAATCAATGTA
1 TTACATTCAATCAATAAATGTA
6943970 TTACATTCAATCAATAAATG
1 TTACATTCAATCAATAAATG
6943990 ATTTCATGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38
Consensus pattern (22 bp):
TTACATTCAATCAATAAATGTA
Found at i:6952728 original size:20 final size:20
Alignment explanation
Indices: 6952692--6952739 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
6952682 GATTTTTTAA
* *
6952692 ATAAATGTTTCATTTAATTT
1 ATAAATGTTTCACTTAAATT
6952712 ATAAATGATTT-ACTTAAATT
1 ATAAATG-TTTCACTTAAATT
*
6952732 ATCAATGT
1 ATAAATGT
6952740 AAACATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.04
20 20 0.83
21 3 0.12
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (20 bp):
ATAAATGTTTCACTTAAATT
Found at i:6953367 original size:24 final size:23
Alignment explanation
Indices: 6953313--6953376 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
6953303 TTGCTTATTT
*
6953313 CATTAAAT-AAAAATTTTAAAAA
1 CATTAAATCAAATATTTTAAAAA
*
6953335 TATAATAAATCAAATATATTTAAAAA
1 CAT--TAAATCAAATAT-TTTAAAAA
*
6953361 CATTAAAACAAATATT
1 CATTAAATCAAATATT
6953377 AAAACAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
22 2 0.06
23 1 0.03
24 16 0.47
25 5 0.15
26 10 0.29
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (23 bp):
CATTAAATCAAATATTTTAAAAA
Found at i:6953379 original size:12 final size:12
Alignment explanation
Indices: 6953362--6953386 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6953352 ATTTAAAAAC
6953362 ATTAAAACAAAT
1 ATTAAAACAAAT
6953374 ATTAAAACAAAT
1 ATTAAAACAAAT
6953386 A
1 A
6953387 AAAATGATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
ATTAAAACAAAT
Found at i:6953987 original size:11 final size:11
Alignment explanation
Indices: 6953936--6953987 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
6953926 GAAAAGAATG
6953936 TAATTTTTTTT
1 TAATTTTTTTT
*
6953947 T-ATTTTACTTT
1 TAATTTT-TTTT
6953958 TAAGTTTTTTTT
1 TAA-TTTTTTTT
*
6953970 AAATTTTTTTT
1 TAATTTTTTTT
6953981 T-ATTTTT
1 TAATTTTT
6953988 ATATATACGA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
10 11 0.32
11 13 0.38
12 6 0.18
13 4 0.12
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (11 bp):
TAATTTTTTTT
Found at i:6954900 original size:27 final size:26
Alignment explanation
Indices: 6954786--6955149 Score: 305
Period size: 26 Copynumber: 13.9 Consensus size: 26
6954776 TTTATTCATC
**
6954786 TTTTATATACATTATTTATTTTAAACGG
1 TTTTATAT--ATTATTTATTTTAAATTG
* *
6954814 TTTTATATTTTATTTATTTTAAAAT-
1 TTTTATATATTATTTATTTTAAATTG
* * *
6954839 TCTTATATATTAGTTATATTAAATTG
1 TTTTATATATTATTTATTTTAAATTG
* *
6954865 --TTGTATATTATTTATTTTAAATCG
1 TTTTATATATTATTTATTTTAAATTG
*
6954889 TTTTAGATTATTATTTATTTTAAATTG
1 TTTTATA-TATTATTTATTTTAAATTG
* *
6954916 TTTCATATATTATTTATTTTGAATTG
1 TTTTATATATTATTTATTTTAAATTG
6954942 TTTTATATATTATTTTATTTTAAATTG
1 TTTTATATATTA-TTTATTTTAAATTG
*
6954969 TTTTATATATTTTATTTATTTTAAATTT
1 TTTTATATA--TTATTTATTTTAAATTG
* **
6954997 TTTTCCACATATTA-TTCCTTTAAATTG
1 TTTT--ATATATTATTTATTTTAAATTG
* *
6955024 TTTTATGTATTGTTTATTTTAAATTG
1 TTTTATATATTATTTATTTTAAATTG
* *
6955050 CTTTA-A-ATTATTTA-TTTCAATATG
1 TTTTATATATTATTTATTTTAAAT-TG
*
6955074 TTTTATACT-TTATTTATGTTAAATCAT-
1 TTTTATA-TATTATTTATTTTAAAT--TG
* * ***
6955101 TTTTATATATTGTTTATTTTGAACCA
1 TTTTATATATTATTTATTTTAAATTG
* *
6955127 TTTTTTGTATTATTTATTTTAAA
1 TTTTATATATTATTTATTTTAAA
6955150 ATTTTAATTA
Statistics
Matches: 272, Mismatches: 46, Indels: 38
0.76 0.13 0.11
Matches are distributed among these distances:
23 6 0.02
24 33 0.12
25 26 0.10
26 88 0.32
27 82 0.30
28 30 0.11
29 3 0.01
30 4 0.01
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.61
Consensus pattern (26 bp):
TTTTATATATTATTTATTTTAAATTG
Found at i:6954928 original size:53 final size:52
Alignment explanation
Indices: 6954786--6955149 Score: 305
Period size: 53 Copynumber: 6.9 Consensus size: 52
6954776 TTTATTCATC
** * *
6954786 TTTTATATACATTATTTATTTTAAACGGTTTTATATTTTATTTATTTTAAAAT-
1 TTTTATAT--ATTATTTATTTTAAATTGTTTTATATATTATTTATTTTAAATTG
* * * * *
6954839 TCTTATATATTAGTTATATTAAATTG--TTGTATATTATTTATTTTAAATCG
1 TTTTATATATTATTTATTTTAAATTGTTTTATATATTATTTATTTTAAATTG
* * *
6954889 TTTTAGATTATTATTTATTTTAAATTGTTTCATATATTATTTATTTTGAATTG
1 TTTTATA-TATTATTTATTTTAAATTGTTTTATATATTATTTATTTTAAATTG
*
6954942 TTTTATATATTATTTTATTTTAAATTGTTTTATATATTTTATTTATTTTAAATTT
1 TTTTATATATTA-TTTATTTTAAATTGTTTTATATA--TTATTTATTTTAAATTG
* ** * *
6954997 TTTTCCACATATTA-TTCCTTTAAATTGTTTTATGTATTGTTTATTTTAAATTG
1 TTTT--ATATATTATTTATTTTAAATTGTTTTATATATTATTTATTTTAAATTG
* * *
6955050 CTTTA-A-ATTATTTA-TTTCAATATGTTTTATACT-TTATTTATGTTAAATCAT-
1 TTTTATATATTATTTATTTTAAAT-TGTTTTATA-TATTATTTATTTTAAAT--TG
* * *** * *
6955101 TTTTATATATTGTTTATTTTGAACCATTTTTTGTATTATTTATTTTAAA
1 TTTTATATATTATTTATTTTAAATTGTTTTATATATTATTTATTTTAAA
6955150 ATTTTAATTA
Statistics
Matches: 251, Mismatches: 42, Indels: 36
0.76 0.13 0.11
Matches are distributed among these distances:
49 29 0.12
50 29 0.12
51 37 0.15
52 8 0.03
53 98 0.39
54 5 0.02
55 38 0.15
57 7 0.03
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.61
Consensus pattern (52 bp):
TTTTATATATTATTTATTTTAAATTGTTTTATATATTATTTATTTTAAATTG
Found at i:6955040 original size:108 final size:103
Alignment explanation
Indices: 6954813--6955097 Score: 251
Period size: 108 Copynumber: 2.7 Consensus size: 103
6954803 ATTTTAAACG
* * * * *
6954813 GTTTTATATTTTATTTATTTTAAAATT-CTTATATATTAGTTATATTAAAT-TGTTGTATA--TT
1 GTTTCATATATTATTTATTTT-AAATTGCTT-TAAATTATTTAT-TTAAATATGTTTTATACTTT
* ** * **
6954874 ATTTATTTTAAATCGTTTT--AGATTATTATTTATTTTAAATT
63 ATTTATGTTAAATTTTTTTCCACA-TATTA-TTCCTTTAAATT
* * *
6954915 GTTTCATATATTATTTATTTTGAATTGTTTTATATATTATTTTATTTTAAAT-TGTTTTATATAT
1 GTTTCATATATTATTTATTTTAAATTGCTTTA-A-ATTA-TTTA-TTTAAATATG-TTT-TATAC
*
6954979 TTTATTTATTTTAAATTTTTTTCCACATATTATTCCTTTAAATT
60 TTTATTTATGTTAAATTTTTTTCCACATATTATTCCTTTAAATT
* * * *
6955023 GTTTTATGTATTGTTTATTTTAAATTGCTTTAAATTATTTATTTCAATATGTTTTATACTTTATT
1 GTTTCATATATTATTTATTTTAAATTGCTTTAAATTATTTATTTAAATATGTTTTATACTTTATT
6955088 TATGTTAAAT
66 TATGTTAAAT
6955098 CATTTTTATA
Statistics
Matches: 151, Mismatches: 20, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
101 6 0.04
102 21 0.14
103 23 0.15
104 20 0.13
105 9 0.06
106 8 0.05
107 1 0.01
108 56 0.37
109 5 0.03
110 2 0.01
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.61
Consensus pattern (103 bp):
GTTTCATATATTATTTATTTTAAATTGCTTTAAATTATTTATTTAAATATGTTTTATACTTTATT
TATGTTAAATTTTTTTCCACATATTATTCCTTTAAATT
Found at i:6957095 original size:27 final size:27
Alignment explanation
Indices: 6957054--6957107 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
6957044 TTGTTGAGTA
6957054 GAGAGAAATTCGACAATGATTTTGGTT
1 GAGAGAAATTCGACAATGATTTTGGTT
*
6957081 GAGAGAAATTTGACAATGATTTTGGTT
1 GAGAGAAATTCGACAATGATTTTGGTT
6957108 TGGATAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.06, G:0.26, T:0.35
Consensus pattern (27 bp):
GAGAGAAATTCGACAATGATTTTGGTT
Found at i:6960700 original size:18 final size:18
Alignment explanation
Indices: 6960679--6960716 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6960669 ATTCGGGTAA
6960679 AACCGAAAAAATTCAGTT
1 AACCGAAAAAATTCAGTT
* *
6960697 AACCGACAGAATTCAGTT
1 AACCGAAAAAATTCAGTT
6960715 AA
1 AA
6960717 TCACTCGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.18, G:0.13, T:0.21
Consensus pattern (18 bp):
AACCGAAAAAATTCAGTT
Found at i:6960950 original size:18 final size:18
Alignment explanation
Indices: 6960927--6960964 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
6960917 AATATATATT
6960927 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
6960945 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
6960963 AA
1 AA
6960965 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:6960957 original size:13 final size:13
Alignment explanation
Indices: 6960941--6960965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6960931 CAAGTACCCA
6960941 ACCCAACCCAATT
1 ACCCAACCCAATT
6960954 ACCCAACCCAAT
1 ACCCAACCCAAT
6960966 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:6961005 original size:20 final size:19
Alignment explanation
Indices: 6960963--6961023 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
6960953 TACCCAACCC
* *
6960963 AATCATAAAAATTACAAAAA
1 AATC-TAAAAATAAAAAAAA
6960983 AAT-TAATAAATAAAAATAAA
1 AATCTAA-AAATAAAAA-AAA
*
6961003 AATCTAAAAGTAAAAAAAA
1 AATCTAAAAATAAAAAAAA
6961022 AA
1 AA
6961024 AAAAATTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
18 3 0.09
19 12 0.34
20 17 0.49
21 3 0.09
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.20
Consensus pattern (19 bp):
AATCTAAAAATAAAAAAAA
Found at i:6961054 original size:9 final size:9
Alignment explanation
Indices: 6961040--6961125 Score: 111
Period size: 9 Copynumber: 9.6 Consensus size: 9
6961030 TTATACAAAA
6961040 TAATTCGGT
1 TAATTCGGT
6961049 TAATTCGGT
1 TAATTCGGT
6961058 TAATTCGGT
1 TAATTCGGT
* *
6961067 TAATTTGGG
1 TAATTCGGT
6961076 TAATTCAGG-
1 TAATTC-GGT
*
6961085 TAATTCGGG
1 TAATTCGGT
6961094 TAATTCGGT
1 TAATTCGGT
*
6961103 TAATTCGAT
1 TAATTCGGT
*
6961112 TAATTCCGT
1 TAATTCGGT
6961121 TAATT
1 TAATT
6961126 TTATACTTAT
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
8 2 0.03
9 64 0.94
10 2 0.03
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (9 bp):
TAATTCGGT
Found at i:6963254 original size:30 final size:30
Alignment explanation
Indices: 6963208--6963298 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
6963198 TTGTAATATA
* *
6963208 ATATA-TAAATTTTGATTTGATTTAATTGT
1 ATATATTAAAATTTGATTTGATTTAATTAT
*
6963237 ATATATTAAAATTTGATTTGAATTAATTAT
1 ATATATTAAAATTTGATTTGATTTAATTAT
* * * *
6963267 ATAAATAAAAAATTGATATTAATTTAATTAT
1 ATATATTAAAATTTGAT-TTGATTTAATTAT
6963298 A
1 A
6963299 AATCTTTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
29 5 0.10
30 35 0.67
31 12 0.23
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (30 bp):
ATATATTAAAATTTGATTTGATTTAATTAT
Found at i:6963271 original size:25 final size:25
Alignment explanation
Indices: 6963196--6963271 Score: 64
Period size: 30 Copynumber: 2.8 Consensus size: 25
6963186 TTTTAATTAA
*
6963196 ATTTGTAATATAA-TATATAAATTTTG
1 ATTTG-AAT-TAATTATATAAAATTTG
*
6963222 ATTTGATTTAATTGTATATATTAAAATTTG
1 ATTTGAATTAA---T-TATA-TAAAATTTG
6963252 ATTTGAATTAATTATATAAA
1 ATTTGAATTAATTATATAAA
6963272 TAAAAAATTG
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
24 3 0.07
25 6 0.15
26 9 0.22
27 1 0.02
29 4 0.10
30 18 0.44
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (25 bp):
ATTTGAATTAATTATATAAAATTTG
Found at i:6965329 original size:19 final size:19
Alignment explanation
Indices: 6965294--6965331 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
6965284 TTGCAATTAA
*
6965294 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
6965313 AATTCTTTA-TTTATTTTCT
1 AATT-TTTATTTTATTTTCT
6965332 TCTGACGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:6966512 original size:16 final size:16
Alignment explanation
Indices: 6966491--6966521 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6966481 GATATTTTAA
6966491 TATATTATATTAATAT
1 TATATTATATTAATAT
*
6966507 TATATTATGTTAATA
1 TATATTATATTAATA
6966522 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:6971768 original size:29 final size:29
Alignment explanation
Indices: 6971705--6971769 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
6971695 TTTAAATTTT
* **
6971705 TATTTTCTAAAATATCGATTAAGAAATTT
1 TATTTTTTAAAATATCGATTAAGAAATGA
*
6971734 TATTTTTTAAAATATCGATTAAGGACATGA
1 TATTTTTTAAAATATCGATTAA-GAAATGA
6971764 T-TTTTT
1 TATTTTT
6971770 AATTTGCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 26 0.84
30 5 0.16
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.48
Consensus pattern (29 bp):
TATTTTTTAAAATATCGATTAAGAAATGA
Found at i:6972121 original size:17 final size:17
Alignment explanation
Indices: 6972099--6972131 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
6972089 ATTTTATTAG
6972099 TCACAAAGAATTAATCA
1 TCACAAAGAATTAATCA
6972116 TCACAAAGAATTAATC
1 TCACAAAGAATTAATC
6972132 TAAATTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.18, G:0.06, T:0.24
Consensus pattern (17 bp):
TCACAAAGAATTAATCA
Found at i:6974449 original size:122 final size:122
Alignment explanation
Indices: 6974230--6974449 Score: 264
Period size: 122 Copynumber: 1.8 Consensus size: 122
6974220 AACAAGTTTG
* * * * *
6974230 GATCCAAGAGTCTTTGAAACTTGTTCTTGGATGGATGATTCCACTTCAAGATCTTCCAAACTTGA
1 GATCCAAGAGTCTTTGAAACTTGATATTGGATGAATAATTCCACTTCAAGACCTTCCAAACTTGA
* *
6974295 TATTAAATTATGTACTTTATCTTCTTTGTGTTGATGCATCATATTACGGAGAGCTTT
66 TATTAAATAATGTACTTTATCTTCTTTATGTTGATGCATCATATTACGGAGAGCTTT
* * * * * *
6974352 GATCCAAGTGTTTTTGAGACTTGATATTGGATGAATAATTCCACTTTAAGAGCCTTCTAGACTTG
1 GATCCAAGAGTCTTTGAAACTTGATATTGGATGAATAATTCCACTTCAAGA-CCTTCCAAACTTG
* * *
6974417 ATCTTAAA-AATG-AGTTTAGTCTTTTTTATGTTG
65 ATATTAAATAATGTACTTTA-TCTTCTTTATGTTG
6974450 GCTGAATAAG
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
121 5 0.06
122 58 0.73
123 17 0.21
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.41
Consensus pattern (122 bp):
GATCCAAGAGTCTTTGAAACTTGATATTGGATGAATAATTCCACTTCAAGACCTTCCAAACTTGA
TATTAAATAATGTACTTTATCTTCTTTATGTTGATGCATCATATTACGGAGAGCTTT
Found at i:6981851 original size:16 final size:18
Alignment explanation
Indices: 6981820--6981853 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
6981810 TCCTTAAATG
6981820 CAAAATATTATTAATTTT
1 CAAAATATTATTAATTTT
6981838 CAAAA-ATT-TTAATTTT
1 CAAAATATTATTAATTTT
6981854 GTACATTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 3 0.19
18 5 0.31
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (18 bp):
CAAAATATTATTAATTTT
Found at i:6989351 original size:21 final size:21
Alignment explanation
Indices: 6989312--6989351 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6989302 TTTAAAGGGA
*
6989312 AAAAATGTAAATAATAAAATT
1 AAAAATGTAAATAACAAAATT
6989333 AAAAATGCTAAA-AACAAAA
1 AAAAATG-TAAATAACAAAA
6989352 ATACACTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAAATGTAAATAACAAAATT
Found at i:6993887 original size:31 final size:31
Alignment explanation
Indices: 6993813--6993887 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 31
6993803 ATTTAAAACA
*
6993813 TGAACTTTGA-TTTGGTACAATTTGATACAT
1 TGAACTTTGATTTTGGTACAATATGATACAT
* * *
6993843 TAAAC-TTGAATTTTGGT-TAATATGTATATAT
1 TGAACTTTG-ATTTTGGTACAATATG-ATACAT
6993874 TGAACTTTGATTTT
1 TGAACTTTGATTTT
6993888 AATTAAACTT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
29 3 0.08
30 10 0.28
31 20 0.56
32 3 0.08
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.48
Consensus pattern (31 bp):
TGAACTTTGATTTTGGTACAATATGATACAT
Found at i:6998351 original size:19 final size:20
Alignment explanation
Indices: 6998313--6998357 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
6998303 TAAATACTAT
*
6998313 AAAAATTTATTAACACAATA
1 AAAAATTTATAAACACAATA
*
6998333 AAAAATTTCTAAACA-AATA
1 AAAAATTTATAAACACAATA
6998352 ACAAAA
1 A-AAAA
6998358 AATCGTATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAATTTATAAACACAATA
Found at i:6999215 original size:2 final size:2
Alignment explanation
Indices: 6999208--6999261 Score: 78
Period size: 2 Copynumber: 28.5 Consensus size: 2
6999198 ATGAATAAGC
6999208 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
6999248 AT TT AT A- AT AT AT A
1 AT AT AT AT AT AT AT A
6999262 GCTTGAACAC
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
1 3 0.06
2 44 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7001831 original size:14 final size:14
Alignment explanation
Indices: 7001800--7001840 Score: 64
Period size: 14 Copynumber: 2.8 Consensus size: 14
7001790 CTGTATTAGC
7001800 TATTTTTATGACTTAA
1 TATTTTTAT-A-TTAA
7001816 TATTTTTATATTAA
1 TATTTTTATATTAA
7001830 TATTTTTATAT
1 TATTTTTATAT
7001841 ATTTTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 15 0.60
15 1 0.04
16 9 0.36
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (14 bp):
TATTTTTATATTAA
Found at i:7004410 original size:6 final size:6
Alignment explanation
Indices: 7004399--7004427 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
7004389 CAGGGTCGGA
7004399 GAGCAT GAGCAT GAGCAT GAGCAT G-GCAT
1 GAGCAT GAGCAT GAGCAT GAGCAT GAGCAT
7004428 ACAGTTCTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 19 0.83
ACGTcount: A:0.31, C:0.17, G:0.34, T:0.17
Consensus pattern (6 bp):
GAGCAT
Found at i:7004605 original size:17 final size:17
Alignment explanation
Indices: 7004565--7004599 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
7004555 TCCTCTATGT
*
7004565 TAGAATAAATATTAAAA
1 TAGAATAAAAATTAAAA
7004582 TAGAATAAAAATTAAAA
1 TAGAATAAAAATTAAAA
7004599 T
1 T
7004600 CAAATAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
TAGAATAAAAATTAAAA
Found at i:7009197 original size:28 final size:27
Alignment explanation
Indices: 7009147--7009260 Score: 79
Period size: 28 Copynumber: 3.9 Consensus size: 27
7009137 CTATTCAGAA
*
7009147 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
7009174 ATCAGTATTAATCTGGGCCATAGCCC-T
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
* *
7009201 ATTACAATATCAGAGCATACTGGGCCTAGCCCAT
1 A-T-CAGTAT--TA--AT-CTGGGCCTAGCCCAT
* *
7009235 ATCAGTATCAGTCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCC-TAGCCC
7009261 TATTACAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
27 19 0.27
28 21 0.30
29 5 0.07
30 1 0.01
31 1 0.01
32 5 0.07
33 9 0.13
34 9 0.13
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:7009202 original size:62 final size:60
Alignment explanation
Indices: 7009124--7009268 Score: 177
Period size: 61 Copynumber: 2.4 Consensus size: 60
7009114 TCAAGCTTTA
* * *
7009124 CTGGGCCTAAGCCCTATT-CAGAAATCAGTG-TTAACTGGGCCTTAGCCCATATCAGTATTAAT
1 CTGGGCCT-AGCCCTATTACA-AAATCAGAGCAT-ACTGGGCC-TAGCCCATATCAGTATCAAT
* *
7009186 CTGGGCCATAGCCCTATTACAATATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAGT
1 CTGGGCC-TAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
7009247 CTGGGCCGTAGCCCTATTACAA
1 CTGGGCC-TAGCCCTATTACAA
7009269 GTCGAGATAT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 39 0.53
62 31 0.42
63 4 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (60 bp):
CTGGGCCTAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
Found at i:7009314 original size:20 final size:19
Alignment explanation
Indices: 7009289--7009344 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 19
7009279 ATTGGGTCTT
7009289 GCCCATATTAATACAGTTAG
1 GCCCATATTAATACAGTT-G
* *
7009309 GCCCATTTTAATACAGCTG
1 GCCCATATTAATACAGTTG
* *
7009328 GCCCATAATAAAACAGT
1 GCCCATATTAATACAGT
7009345 CTCATATGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (19 bp):
GCCCATATTAATACAGTTG
Found at i:7009957 original size:8 final size:8
Alignment explanation
Indices: 7009944--7009973 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
7009934 ACAAATGCCA
7009944 GCTTTTCG
1 GCTTTTCG
7009952 GCTTTTCG
1 GCTTTTCG
7009960 GCTTTTCG
1 GCTTTTCG
7009968 GCTTTT
1 GCTTTT
7009974 GCTGATCTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.23, T:0.53
Consensus pattern (8 bp):
GCTTTTCG
Found at i:7010199 original size:9 final size:9
Alignment explanation
Indices: 7010185--7010210 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7010175 TAGATTTAGA
7010185 TCCACTTGT
1 TCCACTTGT
7010194 TCCACTTGT
1 TCCACTTGT
7010203 TCCACTTG
1 TCCACTTG
7010211 CCCAAGCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.12, T:0.42
Consensus pattern (9 bp):
TCCACTTGT
Found at i:7013174 original size:20 final size:19
Alignment explanation
Indices: 7013147--7013185 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
7013137 TCTTAAATCC
*
7013147 CAAACCTAACCTCGAACCT
1 CAAACCTAAACTCGAACCT
*
7013166 CAAATCCTAAACTTGAACCT
1 CAAA-CCTAAACTCGAACCT
7013186 TGAATCTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.38, C:0.36, G:0.05, T:0.21
Consensus pattern (19 bp):
CAAACCTAAACTCGAACCT
Found at i:7016724 original size:253 final size:251
Alignment explanation
Indices: 7016278--7016740 Score: 676
Period size: 253 Copynumber: 1.8 Consensus size: 251
7016268 AATCAGATCC
* * * * *
7016278 TCTTGTTTCGAAGAAATATAATATCACATCCAACACGTAGGATACGATATTTCAACCTTCGATAC
1 TCTTGTTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATATTTAAACCTTCAATAC
* * * * * * *
7016343 CAAAATCGTCTCATAGTTTCCAAAACTTATGCATTGAAAATTTAAAAGGATATTCAGTCGTTTGG
66 CAAAATCATCTCATAGTTCCCAAAACTCATACATTGAAAATTTAAAAGAATATTCAGTCATTCGG
* *
7016408 TCAAACAATAAATTGAAACCCAACACGTAGGGCACAATTTCTCGAAATTTCCAAACGCCAAATAT
131 TCAAACAATAAATCGAAACCCAACACGTAGGGCACAATTTCTAGAAATTTCCAAACGCCAAATAT
*
7016473 TGCCTTGTTTAAAAATCTCGAATAAAAATGCAATAGTATGAAACAATTAAGTTTAA
196 TGCCTTATTTAAAAATCTCGAATAAAAATGCAATAGTATGAAACAATTAAGTTTAA
*
7016529 TCTTGTTTCAAAGAAATAAAATATCACATCCAGCACGTAGGACACGATATTTTAAACCTTCAATA
1 TCTTGTTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATA-TTTAAACCTTCAATA
* * *
7016594 CCAAAATCATCTCAT-GATTCCCAAAACTCATACATTGAAATTTTGAAAAGAATATTCGGTTATT
65 CCAAAATCATCTCATAG-TTCCCAAAACTCATACATTGAAAATTT-AAAAGAATATTCAGTCATT
* * * **
7016658 CGGTCAAACGATAAGTCGAAACCCAGCACGTAGGGCACGGTTTCTAGAAATTTCCAAACGCCAAA
128 CGGTCAAACAATAAATCGAAACCCAACACGTAGGGCACAATTTCTAGAAATTTCCAAACGCCAAA
7016723 TATTGCCTTATTTAAAAA
193 TATTGCCTTATTTAAAAA
7016741 ATTTATTTTG
Statistics
Matches: 185, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
251 46 0.25
252 50 0.27
253 89 0.48
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (251 bp):
TCTTGTTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATATTTAAACCTTCAATAC
CAAAATCATCTCATAGTTCCCAAAACTCATACATTGAAAATTTAAAAGAATATTCAGTCATTCGG
TCAAACAATAAATCGAAACCCAACACGTAGGGCACAATTTCTAGAAATTTCCAAACGCCAAATAT
TGCCTTATTTAAAAATCTCGAATAAAAATGCAATAGTATGAAACAATTAAGTTTAA
Found at i:7022934 original size:12 final size:13
Alignment explanation
Indices: 7022916--7022945 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
7022906 GCTGGTGATG
7022916 GTTTTTCTTTTTC
1 GTTTTTCTTTTTC
7022929 -TTTTTCTTTTTC
1 GTTTTTCTTTTTC
7022941 GTTTT
1 GTTTT
7022946 AGACTTAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.00, C:0.13, G:0.07, T:0.80
Consensus pattern (13 bp):
GTTTTTCTTTTTC
Found at i:7028378 original size:14 final size:15
Alignment explanation
Indices: 7028361--7028401 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
7028351 TATTTGGTGT
7028361 ATTATATTTTTTAA-
1 ATTATATTTTTTAAG
7028375 ATTAT-TTAATTTTAAG
1 ATTATATT--TTTTAAG
7028391 ATTATATTTTT
1 ATTATATTTTT
7028402 AATATAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 2 0.09
14 5 0.22
15 9 0.39
16 5 0.22
17 2 0.09
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (15 bp):
ATTATATTTTTTAAG
Found at i:7029263 original size:17 final size:19
Alignment explanation
Indices: 7029222--7029264 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
7029212 TATTTTCAAG
7029222 AAAATATAATAATAAATTA
1 AAAATATAATAATAAATTA
7029241 AAAATAT-ATAA-AAA-TA
1 AAAATATAATAATAAATTA
7029257 AAGAATAT
1 AA-AATAT
7029265 CGTTGACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 4 0.17
17 8 0.35
18 4 0.17
19 7 0.30
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAATATAATAATAAATTA
Found at i:7029350 original size:29 final size:29
Alignment explanation
Indices: 7029318--7029392 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 29
7029308 TTTTTAAAAT
* * *
7029318 ATATAATAATTAAT-TTAAATTTTATATTA
1 ATATAATAATTAATATT-AATATTAAATAA
7029347 ATATTAAT-ATTAATATTAATATTAAATAA
1 ATA-TAATAATTAATATTAATATTAAATAA
7029376 ATATAATTACATTAATA
1 ATATAA-TA-ATTAATA
7029393 CTAAACAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
28 3 0.08
29 22 0.58
30 6 0.16
31 7 0.18
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (29 bp):
ATATAATAATTAATATTAATATTAAATAA
Found at i:7029381 original size:6 final size:6
Alignment explanation
Indices: 7029315--7029371 Score: 64
Period size: 6 Copynumber: 9.3 Consensus size: 6
7029305 TATTTTTTAA
*
7029315 AATATAT AATAATT AAT-TT AA-ATTT TATATT AATATT AATATT AATATT
1 AATAT-T AAT-ATT AATATT AATA-TT AATATT AATATT AATATT AATATT
7029364 AATATT AA
1 AATATT AA
7029372 ATAAATATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
5 4 0.09
6 30 0.68
7 8 0.18
8 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
AATATT
Found at i:7029907 original size:26 final size:26
Alignment explanation
Indices: 7029870--7029959 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
7029860 ATATTATTTT
*
7029870 TATTAAATTATGTTTAATAATAATTA
1 TATTAAAATATGTTTAATAATAATTA
* * *
7029896 TATTAAAATATGATTAAAGTATTTATTA
1 TATTAAAATATG-TTTAA-TAATAATTA
* * * **
7029924 TTATTAAATTATATTTAATAACAATCC
1 -TATTAAAATATGTTTAATAATAATTA
7029951 TATTAAAAT
1 TATTAAAAT
7029960 TTAATAACAA
Statistics
Matches: 48, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
26 19 0.40
27 8 0.17
28 11 0.23
29 10 0.21
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (26 bp):
TATTAAAATATGTTTAATAATAATTA
Found at i:7030514 original size:10 final size:10
Alignment explanation
Indices: 7030499--7030557 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
7030489 AATTTTAGCT
7030499 TTTATCTTTA
1 TTTATCTTTA
*
7030509 TTTATCCTTA
1 TTTATCTTTA
7030519 TTTATCTTTA
1 TTTATCTTTA
*
7030529 ATTATCTTTA
1 TTTATCTTTA
7030539 TTTAT-TTGTA
1 TTTATCTT-TA
7030549 TTTATCTTT
1 TTTATCTTT
7030558 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:7032940 original size:53 final size:53
Alignment explanation
Indices: 7032859--7033009 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
7032849 CTTACACGGT
* *
7032859 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAACCCAG-CTATGGTCTTATACGGAATCACATTA
* *
7032914 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAACCCAGCTATGGTCTTATACGGAATCACATTA
** *
7032967 TCACATTGCACCGATGCCATAACCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAACCCAGCTATGGTCTTATACGG
7033010 GCGCACTTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAACCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:7034492 original size:22 final size:19
Alignment explanation
Indices: 7034466--7034516 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 19
7034456 TATATAACCA
7034466 TTTATTTATATTATATTTTAAC
1 TTTATTTAT-TT-TA-TTTAAC
7034488 TTTATTTATTTTATTTAAC
1 TTTATTTATTTTATTTAAC
7034507 --TATTTATTTT
1 TTTATTTATTTT
7034517 TAATTTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 10 0.34
19 6 0.21
20 2 0.07
21 2 0.07
22 9 0.31
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTATTTATTTTATTTAAC
Found at i:7037813 original size:21 final size:18
Alignment explanation
Indices: 7037787--7037839 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
7037777 TTACACCGCA
7037787 TTGTGGATAAACCACTCATCG
1 TTGTGGATAAACCA--C-TCG
*
7037808 TTGTGGACAAACCACTCG
1 TTGTGGATAAACCACTCG
*
7037826 TTATGGATAAACCA
1 TTGTGGATAAACCA
7037840 TTAGTAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 15 0.52
19 1 0.03
21 13 0.45
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (18 bp):
TTGTGGATAAACCACTCG
Found at i:7038031 original size:22 final size:22
Alignment explanation
Indices: 7038005--7038064 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 22
7037995 ATATAGTATG
7038005 GATAAACCACTCAAACGGTGTA
1 GATAAACCACTCAAACGGTGTA
* *
7038027 GATAAAAGCTACTCAAACGGTGTG
1 GAT-AAA-CCACTCAAACGGTGTA
*
7038051 GAAAAACCACTCAA
1 GATAAACCACTCAA
7038065 TGGTGCAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 10 0.31
23 6 0.19
24 16 0.50
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.17
Consensus pattern (22 bp):
GATAAACCACTCAAACGGTGTA
Done.