Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 260 of 433
Found at i:80825675 original size:131 final size:132
Alignment explanation
Indices: 80825402--80825745 Score: 376
Period size: 131 Copynumber: 2.6 Consensus size: 132
80825392 TCTTTTTCAA
* * * * * **
80825402 GTAACTTCATTCTAAC-CCATTGCAACTTCAGAGG-TATAGGATTTGTCACTTTAATCTATTCCA
1 GTAACTTCAATCT-ACTCCACTGCAACTTCA-AGGAGATAAGATTTGTAACTTTAATCTGCTCCA
* * ** * *
80825465 CTTCAACTTTAGGGAGATTAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATGAG
64 CTACAACTTTAGGGAGATTAGACTTGTAGCTTTAATCTAATCCACTACAACTTCAGGGAGATAAG
80825530 ACTT
129 ACTT
* ** * *
80825534 TTCTCTTCAATCTACTTCACTGCAA-TCTCAAGGA-ATAAGATTTGTAACTTCAATCTGCTCCAC
1 GTAACTTCAATCTACTCCACTGCAACT-TCAAGGAGATAAGATTTGTAACTTTAATCTGCTCCAC
80825597 TACAA-TTTCAGGGAGATGT-GACTTGTAGCTTTAATCTAATCCACTACAACTTCAGGGAGATAA
65 TACAACTTT-AGGGAGAT-TAGACTTGTAGCTTTAATCTAATCCACTACAACTTCAGGGAGATAA
80825660 GACTT
128 GACTT
* * * * * * *
80825665 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATTAGACTCGTAGCTTTAATTTGCTCCACT
1 GTAACTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTTAATCTGCTCCACT
80825730 ACAACTTTAGGGAGAT
66 ACAACTTTAGGGAGAT
80825746 AAGATTCTCT
Statistics
Matches: 175, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
130 3 0.02
131 112 0.64
132 57 0.33
133 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (132 bp):
GTAACTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTTAATCTGCTCCACT
ACAACTTTAGGGAGATTAGACTTGTAGCTTTAATCTAATCCACTACAACTTCAGGGAGATAAGAC
TT
Found at i:80825684 original size:88 final size:88
Alignment explanation
Indices: 80825450--80825842 Score: 396
Period size: 88 Copynumber: 4.5 Consensus size: 88
80825440 GGATTTGTCA
* * * * * *
80825450 CTTTAATCTATTCCACTTCAACTTTAGGGAGATTAGATTTGTAGCTTTAATCTGCTCCACTGCAA
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAA
* * **
80825515 CTTCAGGGAGATGAGACTTTTCT
66 CTTCAGGGAGATGTGACTTGTAG
* * * * *
80825538 CTTCAATCTACTTCACTGCAA-TCTCAAGGA-ATAAGATTTGTAACTTCAATCTGCTCCACTACA
1 CTTTAATCTACTCCACTACAACT-TCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCA
*
80825601 ATTTCAGGGAGATGTGACTTGTAG
65 ACTTCAGGGAGATGTGACTTGTAG
* *
80825625 CTTTAATCTAATCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAA
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAA
*
80825690 CTTCAGGGAGAT-TAGACTCGTAG
66 CTTCAGGGAGATGT-GACTTGTAG
* * * * * *
80825713 CTTTAATTTGCTCCACTACAACTTTAGGGAGATAAGATTCTCTATCTTCAATCTGCTCCACTGTA
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATT-TGTAACTTCAATCTGCTCCACTGCA
* * * ** * *
80825778 AATTTAGAGAGATAAGATTTGTGG
65 ACTTCAGGGAGATGTGACTTGTAG
* * * * * *
80825802 CCTTAATTTGCTCCACTGCAAATTCAGAGAGATAAGATTTG
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTTG
80825843 CCACAATAAC
Statistics
Matches: 254, Mismatches: 45, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
87 73 0.29
88 109 0.43
89 72 0.28
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (88 bp):
CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAA
CTTCAGGGAGATGTGACTTGTAG
Found at i:80829373 original size:46 final size:46
Alignment explanation
Indices: 80829323--80829495 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
80829313 TGGTTGAGCA
* *
80829323 TCCGAACTCGTGGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
80829369 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80829414 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80829462 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80829496 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.56
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80829479 original size:93 final size:93
Alignment explanation
Indices: 80829320--80829490 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
80829310 GGATGGTTGA
* *
80829320 GCATCCGAACTCGTGGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTGGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80829385 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
80829413 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTGGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80829478 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80829491 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTGGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:80835418 original size:38 final size:37
Alignment explanation
Indices: 80835361--80835501 Score: 183
Period size: 38 Copynumber: 3.7 Consensus size: 37
80835351 GCACATATAT
* * *
80835361 TGCCATGGCCTTGCCATGGTCTTTACACTTTATCACAA
1 TGCCATAGCCTAGCTATGGTC-TTACACTTTATCACAA
* *
80835399 TGCCATAGCCCAACTATGGTCTTTACACTTTATCACAA
1 TGCCATAGCCTAGCTATGGTC-TTACACTTTATCACAA
* **
80835437 TGCCATAGCCTAGCTATGGTCTTACACTTTAATTATGA
1 TGCCATAGCCTAGCTATGGTCTTACACTTT-ATCACAA
80835475 TGCCATAGCCTAGCTATGGTCTTACAC
1 TGCCATAGCCTAGCTATGGTCTTACAC
80835502 GTAAACAGAT
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
37 9 0.10
38 83 0.90
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (37 bp):
TGCCATAGCCTAGCTATGGTCTTACACTTTATCACAA
Found at i:80837665 original size:30 final size:31
Alignment explanation
Indices: 80837631--80837693 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
80837621 ATTTATTTTA
80837631 TTGTTAA-TTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTTCTTATTATTTTAGAA-GCAT
*
80837661 TTGTTAATTTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTTCTTATTATTTTAGAAGCAT
80837692 TT
1 TT
80837694 TCTTGTTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 7 0.23
31 21 0.70
32 2 0.07
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (31 bp):
TTGTTAATTTTTCTTATTATTTTAGAAGCAT
Found at i:80837911 original size:23 final size:23
Alignment explanation
Indices: 80837879--80837927 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
80837869 ATTTTTATCC
80837879 AGGTCGGGCTTGGACAAAATTTT
1 AGGTCGGGCTTGGACAAAATTTT
* * *
80837902 AGGTCTGGCTTGGATAGAATTTT
1 AGGTCGGGCTTGGACAAAATTTT
80837925 AGG
1 AGG
80837928 CCCATTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.24, C:0.10, G:0.33, T:0.33
Consensus pattern (23 bp):
AGGTCGGGCTTGGACAAAATTTT
Found at i:80839025 original size:38 final size:38
Alignment explanation
Indices: 80838983--80839058 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
80838973 AGTAATATTT
80838983 GACCTTGTCAAAAGTTTTATGGCATTCTTCATCCCATA
1 GACCTTGTCAAAAGTTTTATGGCATTCTTCATCCCATA
80839021 GACCTTGTCAAAAGTTTTATGGCATTCTTCATCCCATA
1 GACCTTGTCAAAAGTTTTATGGCATTCTTCATCCCATA
80839059 CACTTGGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (38 bp):
GACCTTGTCAAAAGTTTTATGGCATTCTTCATCCCATA
Found at i:80845110 original size:40 final size:40
Alignment explanation
Indices: 80845065--80845232 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
80845055 CGGAATATAA
80845065 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80845105 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80845145 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80845185 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80845224 CCGGATATA
1 CCGGATATA
80845233 TTCAATTTCT
Statistics
Matches: 108, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 15 0.14
40 93 0.86
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80849000 original size:40 final size:40
Alignment explanation
Indices: 80848955--80849121 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
80848945 CGGAATATAA
80848955 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
80848995 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80849035 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80849075 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80849114 CCGGATAT
1 CCGGATAT
80849122 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80849105 original size:80 final size:79
Alignment explanation
Indices: 80848971--80849121 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
80848961 ATAATCACGT
*
80848971 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
80849036 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
80849051 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
80849114 CCGGATAT
64 CCGGATAT
80849122 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:80850379 original size:54 final size:53
Alignment explanation
Indices: 80850307--80850418 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 53
80850297 ATCCTCCCCC
* *
80850307 TTTTCCCTTAGTATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTT
1 TTTTTCCTTAGTAATTCGGCCAAGAAGATGGAG-AAGGATGAACAAATTTTTTT
*** **
80850360 TTTTTCCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTT
1 TTTTTCCTTAGTA-ATTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTT
80850414 TTTTT
1 TTTTT
80850419 TTTTTTTCAT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 12 0.24
54 35 0.70
55 3 0.06
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (53 bp):
TTTTTCCTTAGTAATTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTT
Found at i:80856320 original size:40 final size:40
Alignment explanation
Indices: 80856275--80856441 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
80856265 CGGAATATAA
80856275 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80856315 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80856355 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80856395 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80856434 CCGGATAT
1 CCGGATAT
80856442 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80869383 original size:21 final size:20
Alignment explanation
Indices: 80869359--80869403 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
80869349 CACCAAGAGT
* *
80869359 CAAAAGGAGCCAAAAACGAGC
1 CAAAAAGAGACAAAAACGA-C
*
80869380 CAAAAAGAGACAAAAAGGAC
1 CAAAAAGAGACAAAAACGAC
80869400 CAAA
1 CAAA
80869404 TCAAAAAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.60, C:0.20, G:0.20, T:0.00
Consensus pattern (20 bp):
CAAAAAGAGACAAAAACGAC
Found at i:80869384 original size:10 final size:10
Alignment explanation
Indices: 80869353--80869396 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
80869343 AGAGAGCACC
*
80869353 AAGAGTCAAA
1 AAGAGCCAAA
*
80869363 AGGAGCCAAA
1 AAGAGCCAAA
80869373 AACGAGCCAAA
1 AA-GAGCCAAA
*
80869384 AAGAGACAAA
1 AAGAGCCAAA
80869394 AAG
1 AAG
80869397 GACCAAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 19 0.66
11 10 0.34
ACGTcount: A:0.59, C:0.16, G:0.23, T:0.02
Consensus pattern (10 bp):
AAGAGCCAAA
Found at i:80869403 original size:10 final size:11
Alignment explanation
Indices: 80869360--80869403 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
80869350 ACCAAGAGTC
80869360 AAAAGGAGCCA
1 AAAAGGAGCCA
*
80869371 AAAACGAGCCA
1 AAAAGGAGCCA
*
80869382 AAAA-GAGACA
1 AAAAGGAGCCA
80869392 AAAAGGA-CCA
1 AAAAGGAGCCA
80869402 AA
1 AA
80869404 TCAAAAAGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 13 0.45
11 16 0.55
ACGTcount: A:0.61, C:0.18, G:0.20, T:0.00
Consensus pattern (11 bp):
AAAAGGAGCCA
Found at i:80901156 original size:20 final size:20
Alignment explanation
Indices: 80901112--80901157 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
80901102 CAATTAGAGA
*
80901112 AAAATAAATGAACAATAAAAT
1 AAAATAAAT-AACAACAAAAT
80901133 -AAATAAAT-ACAACAACAAT
1 AAAATAAATAACAACAA-AAT
80901152 AAAATA
1 AAAATA
80901158 GGCATCAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 6 0.27
19 3 0.14
20 13 0.59
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.17
Consensus pattern (20 bp):
AAAATAAATAACAACAAAAT
Found at i:80901338 original size:2 final size:2
Alignment explanation
Indices: 80901331--80901355 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80901321 TAAAAATAAG
80901331 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
80901356 ACTTTAGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80904172 original size:24 final size:24
Alignment explanation
Indices: 80904140--80904200 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
80904130 AAAATCCAAT
* * *
80904140 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAAT-TA
80904164 GCACTATGTGTGCGAGTGTAATTA
1 GCACTATGTGTGCGAGTGTAATTA
80904188 GCACTATGTGTGC
1 GCACTATGTGTGC
80904201 AAATACGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATTA
Found at i:80907177 original size:42 final size:42
Alignment explanation
Indices: 80907129--80907282 Score: 200
Period size: 42 Copynumber: 3.7 Consensus size: 42
80907119 ATAGTTTTGA
*
80907129 CTATGCATTGGCACTTAGTGTACGAGATCGGGATAGCTTCGG
1 CTATGCATTGGCACTTAGTGTGCGAGATCGGGATAGCTTCGG
*
80907171 CTATGCATTGGCACTTAGTGTGCGAGATCAGGATAGCTTCGG
1 CTATGCATTGGCACTTAGTGTGCGAGATCGGGATAGCTTCGG
* * * * * *
80907213 CTATGCATTGGAACTTAGTGTGCGTGATTGTGTTAGCTTTGG
1 CTATGCATTGGCACTTAGTGTGCGAGATCGGGATAGCTTCGG
*** *
80907255 CTACATATTGGCACTTAGTGTGTGAGAT
1 CTATGCATTGGCACTTAGTGTGCGAGAT
80907283 TCTCGAGTAA
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 97 1.00
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (42 bp):
CTATGCATTGGCACTTAGTGTGCGAGATCGGGATAGCTTCGG
Found at i:80907385 original size:32 final size:32
Alignment explanation
Indices: 80907348--80907446 Score: 162
Period size: 32 Copynumber: 3.1 Consensus size: 32
80907338 TGAGTATGAG
*
80907348 ATTGGTACAAGATGGTACAGGTATGTACGGAA
1 ATTGGTACAAGATGGTATAGGTATGTACGGAA
** *
80907380 ATTGGTATGAGATGGTATAGGTATGTATGGAA
1 ATTGGTACAAGATGGTATAGGTATGTACGGAA
80907412 ATTGGTACAAGATGGTATAGGTATGTACGGAA
1 ATTGGTACAAGATGGTATAGGTATGTACGGAA
80907444 ATT
1 ATT
80907447 CAATTGAGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.33, C:0.05, G:0.31, T:0.30
Consensus pattern (32 bp):
ATTGGTACAAGATGGTATAGGTATGTACGGAA
Found at i:80921282 original size:122 final size:121
Alignment explanation
Indices: 80921066--80921284 Score: 271
Period size: 122 Copynumber: 1.8 Consensus size: 121
80921056 ATTATGTGAG
** ** * * **
80921066 ATGAAATATGGATGTGTATGATTATTGATTATGTGTGTATGAGTATTTGAATTCTACCCGGGCTA
1 ATGAAATATGGATGTCAATGATTATTGATTATGTGTACATGAGAAATTGAATGATACCCGGGCTA
* * **
80921131 AGTCCCGAAGGCGAATATGCTTGTGATTATATTGCGTTTGAGCCTTAGTAACGAAA
66 AGTCCCGAAGACGAATATGCTGGAAATTATATTGCGTTTGAGCCTTAGTAACGAAA
* *
80921187 ATGAAATATGTATGTCCAATGATTATTGATGTATGTGTACATGAGAAATTGAATGATATCCGGGC
1 ATGAAATATGGATGT-CAATGATTATTGAT-TATGTGTACATGAGAAATTGAATGATACCCGGGC
80921252 TAAG-CCCGAAGAC-AATTATGCTGGAAATTATAT
64 TAAGTCCCGAAGACGAA-TATGCTGGAAATTATAT
80921285 CCGGGTTAAG
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
121 16 0.20
122 34 0.42
123 31 0.38
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (121 bp):
ATGAAATATGGATGTCAATGATTATTGATTATGTGTACATGAGAAATTGAATGATACCCGGGCTA
AGTCCCGAAGACGAATATGCTGGAAATTATATTGCGTTTGAGCCTTAGTAACGAAA
Found at i:80921308 original size:40 final size:40
Alignment explanation
Indices: 80921242--80921408 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
80921232 AAATTGAATG
* * *
80921242 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80921281 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
80921321 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80921361 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80921401 ATATCCGG
1 ATATCCGG
80921409 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80929292 original size:122 final size:120
Alignment explanation
Indices: 80929077--80929294 Score: 269
Period size: 122 Copynumber: 1.8 Consensus size: 120
80929067 ATTATGTGAG
** ** * * *
80929077 ATGAAATATGGATGTGTATGATTATTGATTATGTGTGTATGAGTATTTGAATCTACCCGGGCTAA
1 ATGAAATATGGATGTCAATGATTATTGATTATGTGTACATGAGAAATTGAATATACCCGGGCTAA
* * **
80929142 GTCCCGAAGGCGAATATGCTTGTGATTATATTGCGTTTGAGCCTTAGTAACGAAA
66 GTCCCGAAGACGAATATGCTGGAAATTATATTGCGTTTGAGCCTTAGTAACGAAA
* *
80929197 ATGAAATATGTATGTCCAATGATTATTGATGTATGTGTACATGAGAAATTGAATGATATCCGGGC
1 ATGAAATATGGATGT-CAATGATTATTGAT-TATGTGTACATGAGAAATTGAAT-ATACCCGGGC
80929262 TAAG-CCCGAAGAC-AATTATGCTGGAAATTATAT
63 TAAGTCCCGAAGACGAA-TATGCTGGAAATTATAT
80929295 CCGGGTTAAG
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
120 14 0.17
121 14 0.17
122 41 0.51
123 12 0.15
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (120 bp):
ATGAAATATGGATGTCAATGATTATTGATTATGTGTACATGAGAAATTGAATATACCCGGGCTAA
GTCCCGAAGACGAATATGCTGGAAATTATATTGCGTTTGAGCCTTAGTAACGAAA
Found at i:80929318 original size:40 final size:40
Alignment explanation
Indices: 80929252--80929418 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
80929242 AAATTGAATG
* * *
80929252 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80929291 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
80929331 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80929371 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80929411 ATATCCGG
1 ATATCCGG
80929419 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80939111 original size:43 final size:43
Alignment explanation
Indices: 80939050--80939154 Score: 147
Period size: 43 Copynumber: 2.4 Consensus size: 43
80939040 TTATTTGAAA
* * * *
80939050 AAACGCCACTAAAGGTCATGGACTTTAGTGGCGCTTTTACCAC
1 AAACGCCGCTAAAGGTCATGGACTTTAGCGACACTTTTACCAC
* * *
80939093 AAACGCCGCTAAAAGTCATGGCCTTTAGCGACACTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGGACTTTAGCGACACTTTTACCAC
80939136 AAACGCCGCTAAAGGTCAT
1 AAACGCCGCTAAAGGTCAT
80939155 TAAATTTAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGGACTTTAGCGACACTTTTACCAC
Found at i:80943274 original size:14 final size:14
Alignment explanation
Indices: 80943255--80943304 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
80943245 AGTTAAGTAA
80943255 TTTTATAAAATATT
1 TTTTATAAAATATT
* *
80943269 TTTTAT-TACTATT
1 TTTTATAAAATATT
* *
80943282 TTTTATAAATTAGT
1 TTTTATAAAATATT
80943296 TTTTATAAA
1 TTTTATAAA
80943305 TAAAAAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
13 11 0.37
14 19 0.63
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (14 bp):
TTTTATAAAATATT
Found at i:80943750 original size:20 final size:22
Alignment explanation
Indices: 80943725--80943769 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
80943715 CAAATGTTTT
*
80943725 TTTATTTATTTTTC-ATG-TTA
1 TTTATTTATTTATCAATGATTA
80943745 TTTATTTATTTATCAATGATTA
1 TTTATTTATTTATCAATGATTA
80943767 TTT
1 TTT
80943770 TACTTTACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.59
21 3 0.14
22 6 0.27
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTATTTATTTATCAATGATTA
Found at i:80943776 original size:24 final size:21
Alignment explanation
Indices: 80943718--80943776 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 21
80943708 AATATATCAA
* *
80943718 ATGTTTTTTTATTTATTTTTC
1 ATGTTATTTTATTTATTTATC
80943739 ATGTTA-TTTATTTATTTATC
1 ATGTTATTTTATTTATTTATC
80943759 AATGATTATTTTACTTTA
1 -ATG-TTATTTTA-TTTA
80943777 CAAATTCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 13 0.41
21 8 0.25
22 3 0.09
23 4 0.12
24 4 0.12
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (21 bp):
ATGTTATTTTATTTATTTATC
Found at i:80944060 original size:2 final size:2
Alignment explanation
Indices: 80944053--80944084 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80944043 GAATGTATTT
80944053 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80944085 ATAAAAACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80944160 original size:24 final size:24
Alignment explanation
Indices: 80944133--80944180 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
80944123 CAAAATAACG
*
80944133 ATTAATTTTTATCTAAACTTTTAA
1 ATTAATTTTTATATAAACTTTTAA
80944157 ATTAATTTTTATATAAACTTTTAA
1 ATTAATTTTTATATAAACTTTTAA
80944181 TAAATATATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
ATTAATTTTTATATAAACTTTTAA
Found at i:80944838 original size:41 final size:41
Alignment explanation
Indices: 80944793--80945010 Score: 253
Period size: 41 Copynumber: 5.3 Consensus size: 41
80944783 TTACATGACT
* * * * *
80944793 TTTAGTGGCATTTTACCAAAAACCCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTGATGCTCTGGTC
*
80944834 TTTAGCGGCGTTTCACCAAAAGCGCCGCTGATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTGATGCTCTGGTC
**
80944875 TTTAGCGGCGTTGCACCAAAAGCGCCGCTGATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTGATGCTCTGGTC
* * * *
80944916 TTTAGTGGCGTTTTACCAAAAGCACCGTTGATGCTCT-GTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTGATGCTCTGGTC
* * *
80944956 TTTAGCGGCGTTTTAACAAAAAACGCCGCT-ATTGCTCT-GTT
1 TTTAGCGGCGTTTT-ACCAAAAGCGCCGCTGA-TGCTCTGGTC
*
80944997 TTTAGCGTCGTTTT
1 TTTAGCGGCGTTTT
80945011 TGTCAAAACG
Statistics
Matches: 156, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 16 0.10
41 140 0.90
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTGATGCTCTGGTC
Found at i:80945030 original size:40 final size:40
Alignment explanation
Indices: 80944792--80945041 Score: 184
Period size: 41 Copynumber: 6.1 Consensus size: 40
80944782 GTTACATGAC
* * * * *
80944792 TTTTAGTGGCATTTTACCAAAAACCCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTAACAAAAACGCCGCTATTGCTCT-GT
* * * *
80944833 CTTTAGCGGCGTTTCACCAAAAGCGCCGCTGA-TGCTCTGGT
1 TTTTAGCGGCGTTTTAACAAAAACGCCGCT-ATTGCTCT-GT
* ** * *
80944874 CTTTAGCGGCGTTGCACCAAAAGCGCCGCTGA-TGCTCTGGT
1 TTTTAGCGGCGTTTTAACAAAAACGCCGCT-ATTGCTCT-GT
* * * * * *
80944915 CTTTAGTGGCGTTTTACCAAAAGCACCGTTGA-TGCTCTGT
1 TTTTAGCGGCGTTTTAACAAAAACGCCGCT-ATTGCTCTGT
80944955 TTTTAGCGGCGTTTTAACAAAAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTAAC-AAAAACGCCGCTATTGCTCTGT
* **
80944996 TTTTAGCGTCGTTTTTGTC-AAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCG-TTTTAACAAAAACGCCGCTATTGCTCTGT
80945036 ATTTTA
1 -TTTTA
80945042 CAATTTTTGC
Statistics
Matches: 183, Mismatches: 21, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
40 39 0.21
41 138 0.75
42 6 0.03
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTAACAAAAACGCCGCTATTGCTCTGT
Found at i:80945080 original size:12 final size:12
Alignment explanation
Indices: 80945065--80945090 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80945055 GTTTTTTGAT
80945065 AAAACGCCGCTA
1 AAAACGCCGCTA
80945077 AAAACGCCGCTA
1 AAAACGCCGCTA
80945089 AA
1 AA
80945091 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:80949661 original size:17 final size:18
Alignment explanation
Indices: 80949639--80949672 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80949629 TTTATATTAA
*
80949639 GGTTAA-AATGTTAATTT
1 GGTTAATAAGGTTAATTT
80949656 GGTTAATAAGGTTAATT
1 GGTTAATAAGGTTAATT
80949673 AAATAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (18 bp):
GGTTAATAAGGTTAATTT
Found at i:80950580 original size:43 final size:44
Alignment explanation
Indices: 80950532--80950695 Score: 210
Period size: 43 Copynumber: 3.8 Consensus size: 44
80950522 TACTGAGATG
*
80950532 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* *
80950575 TGATTACGTGTAAGACCATGTCTGGGACATTGGAATCGT-TATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* * * *
80950618 TAATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-ATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* * *
80950661 TGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCAT
80950696 TGTACGAACT
Statistics
Matches: 106, Mismatches: 13, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
42 7 0.07
43 99 0.93
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
Found at i:80960954 original size:37 final size:36
Alignment explanation
Indices: 80960903--80961004 Score: 127
Period size: 37 Copynumber: 2.8 Consensus size: 36
80960893 TGTGAGTATG
80960903 TGTAAGACCATAGCTGGGCTATGGCATCGTAATGACA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTAAT-ACA
* * * *
80960940 TGTATGACCATAGCTGGGCTATGGCATTGTGATACG
1 TGTAAGACCATAGCTGGGCTATGGCATCGTAATACA
80960976 TGTAAGACCAT-GTCTGGGAC-ATGGCATCG
1 TGTAAGACCATAG-CTGGG-CTATGGCATCG
80961005 ATATGAGATT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
35 1 0.02
36 25 0.44
37 31 0.54
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (36 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGTAATACA
Found at i:80961021 original size:42 final size:42
Alignment explanation
Indices: 80960974--80961089 Score: 182
Period size: 42 Copynumber: 2.8 Consensus size: 42
80960964 CATTGTGATA
* *
80960974 CGTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATTT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATGAGACTT
80961016 CGTGTAAGACCATGTCTGGGACATGGCATCAATATGAGACTT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATGAGACTT
80961058 CGTGTAAGACCATAGT-T-GGACTATGGCATCAA
1 CGTGTAAGACCAT-GTCTGGGAC-ATGGCATCAA
80961090 GTAAACGACG
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
41 4 0.06
42 64 0.91
43 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATGGCATCAATATGAGACTT
Found at i:80966026 original size:47 final size:47
Alignment explanation
Indices: 80965975--80966106 Score: 246
Period size: 47 Copynumber: 2.8 Consensus size: 47
80965965 TTTAGGATTA
*
80965975 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
80966022 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
80966069 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGC
80966107 ATGCATATGT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 83 1.00
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:80966076 original size:22 final size:22
Alignment explanation
Indices: 80966005--80966076 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
80965995 GCATATATGA
80966005 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
80966027 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
80966052 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
80966074 GAT
1 GAT
80966077 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:80966111 original size:20 final size:20
Alignment explanation
Indices: 80966086--80966126 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
80966076 TGAATGTGAA
80966086 CATGCATATGTGTGATAAGG
1 CATGCATATGTGTGATAAGG
80966106 CATGCATATGTGTGATAAGG
1 CATGCATATGTGTGATAAGG
80966126 C
1 C
80966127 CGAATGGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (20 bp):
CATGCATATGTGTGATAAGG
Found at i:80966120 original size:67 final size:67
Alignment explanation
Indices: 80966039--80966166 Score: 238
Period size: 67 Copynumber: 1.9 Consensus size: 67
80966029 TGAATGTGAA
*
80966039 CATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAA
1 CATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAA
80966104 GG
66 GG
*
80966106 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTG
1 CATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTG
80966167 GTAAAGCCGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.27
Consensus pattern (67 bp):
CATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAA
GG
Found at i:80966293 original size:46 final size:46
Alignment explanation
Indices: 80966160--80966296 Score: 204
Period size: 46 Copynumber: 3.0 Consensus size: 46
80966150 GAACATGCAT
*
80966160 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAAATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
*
80966206 ATATGAT-GTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATG-TGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
80966252 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
80966297 TGTATATATA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
45 1 0.01
46 80 0.98
47 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:80975204 original size:22 final size:21
Alignment explanation
Indices: 80975179--80975220 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
80975169 ATTATTAACG
80975179 TAATGAATTTTAATTAATTTTA
1 TAATGAATTTTAATT-ATTTTA
* *
80975201 TAATTAATTTTGATTATTTT
1 TAATGAATTTTAATTATTTT
80975221 CGATAGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (21 bp):
TAATGAATTTTAATTATTTTA
Found at i:80985699 original size:41 final size:41
Alignment explanation
Indices: 80985653--80985734 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
80985643 TTCCCAGTTG
80985653 GACCTTCGGAATAGAAAAGATACGAAAGATCCATTGTGAGA
1 GACCTTCGGAATAGAAAAGATACGAAAGATCCATTGTGAGA
80985694 GACCTTCGGAATAGAAAAGATACGAAAGATCCATTGTGAGA
1 GACCTTCGGAATAGAAAAGATACGAAAGATCCATTGTGAGA
80985735 ACACATGTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (41 bp):
GACCTTCGGAATAGAAAAGATACGAAAGATCCATTGTGAGA
Found at i:80985854 original size:50 final size:51
Alignment explanation
Indices: 80985782--80985918 Score: 159
Period size: 50 Copynumber: 2.7 Consensus size: 51
80985772 GAAAATGGTT
* * * *
80985782 TTAGGTTACGTGTGTAGTACTAAGTGCAGGCTATTACGTGCACCAGAT-GG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAGC
* * *
80985832 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAGC
* * * * *
80985883 TTCGATCACATGAGTGGTACTAAGTGCAGGCCACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
80985919 TGCGTAAAAG
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 42 0.57
51 32 0.43
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (51 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAGC
Found at i:80985913 original size:51 final size:50
Alignment explanation
Indices: 80985795--80985920 Score: 153
Period size: 51 Copynumber: 2.5 Consensus size: 50
80985785 GGTTACGTGT
* * * * *
80985795 GTAGTACTAAGTGCAGGCTATTACGTGCACCAGATGGTTAGGTCACATGT
1 GTAGTACTAAGTGCAGGCTACTATGTGCACCAGATGCTTAGATCACATGA
* * *
80985845 GTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCGATCACATGA
1 GTAGTACTAAGTGCAGGCTACTATGTGCACCAGAT-GCTTAGATCACATGA
* *
80985896 GTGGTACTAAGTGCAGGCCACTATG
1 GTAGTACTAAGTGCAGGCTACTATG
80985921 CGTAAAAGAT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 31 0.48
51 34 0.52
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (50 bp):
GTAGTACTAAGTGCAGGCTACTATGTGCACCAGATGCTTAGATCACATGA
Found at i:80985932 original size:51 final size:51
Alignment explanation
Indices: 80985837--80986018 Score: 170
Period size: 51 Copynumber: 3.6 Consensus size: 51
80985827 GATGGTTAGG
* * * *** *
80985837 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCGA
1 TCACAAGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGA
* * * *
80985888 TCACATGAGTGGTACTAAGTGCAGGCCACTATGCGTAAAAGATAGCTTTGG
1 TCACAAGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGA
* * * * *
80985939 TTACAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTTGA
1 TCACAAGTGTGGTACTAAGTGCAGGCCACTATGTGTAA-AAGATAGCTTTGA
* *
80985990 -CTACAAGGGTGGTACTATGTGCAGGCCAC
1 TC-ACAAGTGTGGTACTAAGTGCAGGCCAC
80986019 CGGGCATCCG
Statistics
Matches: 108, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
50 2 0.02
51 106 0.98
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (51 bp):
TCACAAGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGA
Found at i:80987425 original size:40 final size:40
Alignment explanation
Indices: 80987355--80987532 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
80987345 AAACCAAGTA
* * * *
80987355 CCTTCGGAATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
80987394 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
80987434 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
80987474 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
80987514 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80987533 TTACCATCCG
Statistics
Matches: 126, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:80995692 original size:40 final size:40
Alignment explanation
Indices: 80995639--80995790 Score: 261
Period size: 40 Copynumber: 3.8 Consensus size: 40
80995629 GAACATAGCT
*
80995639 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
80995679 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
80995719 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
*
80995759 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
80995791 TTACCATCCG
Statistics
Matches: 108, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
39 1 0.01
40 107 0.99
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:81003183 original size:39 final size:39
Alignment explanation
Indices: 81003128--81003290 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
81003118 TGTGTATGAA
*
81003128 TGTGCGATATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGA-GTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
81003168 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81003207 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81003246 TGTGCGAGTTGTGATATCCGGGTTAAGTCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
81003285 TGTGCG
1 TGTGCG
81003291 GTTACCATAA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 106 0.94
40 7 0.06
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:81003317 original size:39 final size:39
Alignment explanation
Indices: 81003140--81003320 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
81003130 TGCGATATTG
*
81003140 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
81003179 TGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
81003218 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
81003257 TGATATCCGGGTTAAGTCCGAAGGCATTTGTGCG-GTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
** * *
81003295 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
81003321 GTTTGAACGA
Statistics
Matches: 125, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
38 14 0.11
39 111 0.89
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:81011104 original size:39 final size:39
Alignment explanation
Indices: 81011050--81011290 Score: 374
Period size: 39 Copynumber: 6.2 Consensus size: 39
81011040 TGTGTATGAA
*
81011050 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
81011089 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81011128 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
81011167 TGTGCAAGTTGTGATATCCGGGCAAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81011206 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
81011245 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
81011285 TGTGCG
1 TGTGCG
81011291 GTTTACCATA
Statistics
Matches: 182, Mismatches: 19, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
39 165 0.91
40 17 0.09
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:81011306 original size:40 final size:40
Alignment explanation
Indices: 81011050--81011326 Score: 226
Period size: 39 Copynumber: 7.0 Consensus size: 40
81011040 TGTGTATGAA
* * * *
81011050 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTCATAACCGGGCTAAGTCCCGAAGGCATT
* * *
81011089 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTCATAACCGGGCTAAGTCCCGAAGGCATT
* * * * * *
81011128 GGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTCATAACCGGGCTAAGTCCCGAAGGCATT
* * * * *
81011167 TGTGCAAGTTGTGATATCCGGGCAAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTCATAACCGGGCTAAGTCCCGAAGGCATT
* * * * * *
81011206 GGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTCATAACCGGGCTAAGTCCCGAAGGCATT
* * *
81011245 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTCATAACCGGGCTAAGTCCCGAAGGCATT
* *
81011285 TGTGCG-GTT-TACCATAACCGGGCTATGTCCCGAAGGCGTT
1 TGTGCGAGTTGT--CATAACCGGGCTAAGTCCCGAAGGCATT
81011325 TG
1 TG
81011327 AACGAGTAGC
Statistics
Matches: 211, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
38 1 0.00
39 168 0.80
40 42 0.20
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (40 bp):
TGTGCGAGTTGTCATAACCGGGCTAAGTCCCGAAGGCATT
Found at i:81014474 original size:2 final size:2
Alignment explanation
Indices: 81014467--81014523 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
81014457 ATTTGAGTTG
81014467 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81014509 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
81014524 ATTATTTATA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81017370 original size:29 final size:27
Alignment explanation
Indices: 81017336--81017438 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
81017326 TACTCAATCA
*
81017336 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * **
81017365 CGCACACATAGTGCCATATAGTCCAAATT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
81017394 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
81017423 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81017439 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:81021391 original size:14 final size:14
Alignment explanation
Indices: 81021374--81021404 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
81021364 CTTTAATTAA
81021374 TTAACTTGGTCTTG
1 TTAACTTGGTCTTG
81021388 TTAACTTGGTCTTG
1 TTAACTTGGTCTTG
81021402 TTA
1 TTA
81021405 TTTAAAGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.13, G:0.19, T:0.52
Consensus pattern (14 bp):
TTAACTTGGTCTTG
Found at i:81028340 original size:40 final size:40
Alignment explanation
Indices: 81028293--81028496 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
81028283 CGGGCTTCAA
** *
81028293 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
81028333 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
81028373 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81028413 CCAGA-ATTAGTAACTCGCACAAATGCCTTTGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81028453 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
81028493 CCGG
1 CCGG
81028497 TTATCATCTG
Statistics
Matches: 146, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 145 0.99
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:81036139 original size:26 final size:25
Alignment explanation
Indices: 81036094--81036155 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 25
81036084 ACTAGGGAAA
81036094 AAGCCCTTTTGGTAAACTGGGGCAT
1 AAGCCCTTTTGGTAAACTGGGGCAT
81036119 AAGCCCTTTTCGGTAAACTGGGGCAT
1 AAGCCCTTTT-GGTAAACTGGGGCAT
*
81036145 AAGCTCTTTTG
1 AAGCCCTTTTG
81036156 CACTTCCTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 11 0.31
26 24 0.69
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (25 bp):
AAGCCCTTTTGGTAAACTGGGGCAT
Found at i:81036229 original size:20 final size:20
Alignment explanation
Indices: 81036204--81036290 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
81036194 TTATGAATAC
* *
81036204 ATCATGTGCATATCGTATAT
1 ATCATGTGCATATCATACAT
*
81036224 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
81036244 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
81036264 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
81036284 ATCATGT
1 ATCATGT
81036291 ATATCAAAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
20 62 0.97
21 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:81036255 original size:11 final size:11
Alignment explanation
Indices: 81036204--81036279 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
81036194 TTATGAATAC
81036204 ATCATGTGCAT
1 ATCATGTGCAT
**
81036215 ATC--GTATAT
1 ATCATGTGCAT
81036224 ATCATGTGCAT
1 ATCATGTGCAT
*
81036235 ATC--GTACAT
1 ATCATGTGCAT
81036244 ATCATGTGCAT
1 ATCATGTGCAT
*
81036255 ATCA--TACAT
1 ATCATGTGCAT
81036264 ATCATGTGCAT
1 ATCATGTGCAT
81036275 ATCAT
1 ATCAT
81036280 ATCAATCATG
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:81036296 original size:9 final size:10
Alignment explanation
Indices: 81036204--81036296 Score: 63
Period size: 9 Copynumber: 9.4 Consensus size: 10
81036194 TTATGAATAC
81036204 ATCATGTGCAT
1 ATCATGT-CAT
* *
81036215 ATCGTAT-AT
1 ATCATGTCAT
81036224 ATCATGTGCAT
1 ATCATGT-CAT
81036235 ATC--GTACAT
1 ATCATGT-CAT
81036244 ATCATGTGCAT
1 ATCATGT-CAT
*
81036255 ATCAT-ACAT
1 ATCATGTCAT
81036264 ATCATGTGCAT
1 ATCATGT-CAT
*
81036275 ATCATATCA-
1 ATCATGTCAT
81036284 ATCATGT-AT
1 ATCATGTCAT
81036293 ATCA
1 ATCA
81036297 AAATCCCATG
Statistics
Matches: 65, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
8 1 0.02
9 33 0.51
10 2 0.03
11 29 0.45
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (10 bp):
ATCATGTCAT
Found at i:81044212 original size:25 final size:26
Alignment explanation
Indices: 81044184--81044269 Score: 86
Period size: 26 Copynumber: 3.3 Consensus size: 26
81044174 CTGGAGGCCT
81044184 AGCCTCTTTT-AAT-AACTCGGGCAAA
1 AGCC-CTTTTCAATAAACTCGGGCAAA
* * *
81044209 AGCCCTTTTCGATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTCGGGCAAA
** * *
81044235 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTCGGGCAAA
81044261 AGCCCTTTT
1 AGCCCTTTT
81044270 GCACTTCCTC
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
24 5 0.09
25 6 0.11
26 44 0.80
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTCGGGCAAA
Found at i:81044231 original size:26 final size:26
Alignment explanation
Indices: 81044197--81044269 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
81044187 CTCTTTTAAT
* *
81044197 AACTCGGGCAAAAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
81044223 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
81044249 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
81044270 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:81044346 original size:20 final size:20
Alignment explanation
Indices: 81044319--81044405 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
81044309 TTATGAATAC
* *
81044319 ATCATGTGCATATCGTATAT
1 ATCATGTGCATATCATACAT
*
81044339 AACATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
81044359 ATCATGTGTATATCATACAT
1 ATCATGTGCATATCATACAT
81044379 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
81044399 ATCATGT
1 ATCATGT
81044406 ATATCAAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 58 0.97
21 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:81044390 original size:11 final size:11
Alignment explanation
Indices: 81044319--81044394 Score: 56
Period size: 11 Copynumber: 7.5 Consensus size: 11
81044309 TTATGAATAC
81044319 ATCATGTGCAT
1 ATCATGTGCAT
**
81044330 ATC--GTATAT
1 ATCATGTGCAT
*
81044339 AACATGTGCAT
1 ATCATGTGCAT
*
81044350 ATCA--TACAT
1 ATCATGTGCAT
*
81044359 ATCATGTGTAT
1 ATCATGTGCAT
*
81044370 ATCA--TACAT
1 ATCATGTGCAT
81044379 ATCATGTGCAT
1 ATCATGTGCAT
81044390 ATCAT
1 ATCAT
81044395 ATCAATCATG
Statistics
Matches: 47, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
9 21 0.45
11 26 0.55
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:81046476 original size:23 final size:23
Alignment explanation
Indices: 81046450--81046499 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
81046440 ATTTTCAATA
*
81046450 CACCGTCACATAGCCCAAATAAT
1 CACCGACACATAGCCCAAATAAT
*
81046473 CACCGACACATAGCCCGAATAAT
1 CACCGACACATAGCCCAAATAAT
81046496 CACC
1 CACC
81046500 AAATTTCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.14
Consensus pattern (23 bp):
CACCGACACATAGCCCAAATAAT
Found at i:81058526 original size:48 final size:49
Alignment explanation
Indices: 81058455--81058572 Score: 175
Period size: 48 Copynumber: 2.4 Consensus size: 49
81058445 CCCAAACATG
81058455 GTCCCAGACATGGTCTTACACTGGCTCACATATCA-ACGCTGATGCCAT
1 GTCCCAGACATGGTCTTACACTGGCTCACATATCACACGCTGATGCCAT
* * * *
81058503 GTCCCAGACATGGTCTTACACTGGTTCTCATCTCACATGCTGATGCCAT
1 GTCCCAGACATGGTCTTACACTGGCTCACATATCACACGCTGATGCCAT
* *
81058552 GTCCTATACATGGTCTTACAC
1 GTCCCAGACATGGTCTTACAC
81058573 GGCATCTCGT
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
48 32 0.51
49 31 0.49
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.29
Consensus pattern (49 bp):
GTCCCAGACATGGTCTTACACTGGCTCACATATCACACGCTGATGCCAT
Found at i:81068041 original size:21 final size:20
Alignment explanation
Indices: 81068015--81068054 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
81068005 GCATTACGGT
81068015 AAGTTGGGCCTCAAGGGGCTG
1 AAGTTGGGCC-CAAGGGGCTG
*
81068036 AAGTTGGGCCCAATGGGCT
1 AAGTTGGGCCCAAGGGGCT
81068055 TTTGGGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20
Consensus pattern (20 bp):
AAGTTGGGCCCAAGGGGCTG
Found at i:81068432 original size:20 final size:20
Alignment explanation
Indices: 81068407--81068453 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
81068397 ATTTTGATAT
81068407 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
81068427 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
81068447 ACATGAT
1 ACATGAT
81068454 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:81068575 original size:25 final size:26
Alignment explanation
Indices: 81068503--81068600 Score: 137
Period size: 25 Copynumber: 3.8 Consensus size: 26
81068493 AAGGAAGTGC
81068503 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
81068529 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
* * **
81068556 AAAAGGGATT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
81068581 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
81068601 ATTAAAGAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
25 30 0.46
26 9 0.14
27 26 0.40
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:81069228 original size:18 final size:18
Alignment explanation
Indices: 81069205--81069239 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81069195 ACTTAGGACA
81069205 TGTTTTCAAAACAACACT
1 TGTTTTCAAAACAACACT
*
81069223 TGTTTTCCAAACAACAC
1 TGTTTTCAAAACAACAC
81069240 AACGTTACGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (18 bp):
TGTTTTCAAAACAACACT
Found at i:81078450 original size:13 final size:13
Alignment explanation
Indices: 81078432--81078458 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81078422 GAGCACGACG
81078432 CACACGGGCGTGT
1 CACACGGGCGTGT
81078445 CACACGGGCGTGT
1 CACACGGGCGTGT
81078458 C
1 C
81078459 CCTTTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:81086417 original size:7 final size:7
Alignment explanation
Indices: 81086401--81086433 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
81086391 TTCAAACTAC
81086401 TTTTTA-
1 TTTTTAT
81086407 TTTTTAT
1 TTTTTAT
81086414 TTTTTAT
1 TTTTTAT
81086421 TTTTTAT
1 TTTTTAT
81086428 TTTTTA
1 TTTTTA
81086434 GTAGATTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:81088060 original size:46 final size:44
Alignment explanation
Indices: 81087993--81088163 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 44
81087983 ATGTAACCGC
*
81087993 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTT--CAT
* *
81088039 CCATAAGTGAACTCGGACTCAACTCAATGAGTT-GGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTT-CAT
* * *
81088088 -C-TCA-CGAACTCGGACTCAAC-CAACGAGTTCGGACATTCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCAT
*
81088128 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
81088164 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
40 3 0.03
41 3 0.03
42 2 0.02
43 16 0.15
44 12 0.12
45 10 0.10
46 47 0.45
47 3 0.03
48 2 0.02
49 3 0.03
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCAT
Found at i:81088140 original size:89 final size:92
Alignment explanation
Indices: 81088000--81088167 Score: 270
Period size: 89 Copynumber: 1.8 Consensus size: 92
81087990 CGCCCATAAG
* *
81088000 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTC-CATCCATAAGTGAACTCGGACTCAACTCA
*
81088065 ATGAGTT-GGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
*
81088092 CGAACTCGGACTCAAC-CAACGAGTTCGGACATT-CATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCCATCCATAAGTGAACTCGGACTCAACTCAA
81088155 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81088168 TCAACCATCC
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
89 35 0.49
90 6 0.08
91 14 0.20
92 16 0.23
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:81095211 original size:93 final size:93
Alignment explanation
Indices: 81095098--81095269 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
81095088 CGCCCATAAG
*
81095098 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
81095162 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
81095191 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81095256 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81095270 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:81095264 original size:46 final size:46
Alignment explanation
Indices: 81095091--81095266 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
81095081 TGTAACCCGC
* *
81095091 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
81095137 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
81095187 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81095230 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81095267 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81098678 original size:35 final size:35
Alignment explanation
Indices: 81098637--81098703 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
81098627 TTTCTTGGGG
81098637 TTCGACAATCTGGTCTTGCTAAAACTATACTACTA
1 TTCGACAATCTGGTCTTGCTAAAACTATACTACTA
81098672 TTCGACAATCTGGTCTTGCTAAAACTATACTA
1 TTCGACAATCTGGTCTTGCTAAAACTATACTA
81098704 TGCGATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (35 bp):
TTCGACAATCTGGTCTTGCTAAAACTATACTACTA
Found at i:81099920 original size:40 final size:40
Alignment explanation
Indices: 81099876--81099951 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
81099866 TAGTGCCTCA
*
81099876 TATAGTCGAAGCTA-TTTGAATTCACACACTTAGTGCTATT
1 TATAGCCGAAGCTATTTTGAA-TCACACACTTAGTGCTATT
* *
81099916 TATAGCCGAAGCTATTTTGAATCGCATACTTAGTGC
1 TATAGCCGAAGCTATTTTGAATCACACACTTAGTGC
81099952 CAATGTAGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 26 0.81
41 6 0.19
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (40 bp):
TATAGCCGAAGCTATTTTGAATCACACACTTAGTGCTATT
Found at i:81102047 original size:28 final size:28
Alignment explanation
Indices: 81102014--81102067 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
81102004 TATATGGCCT
81102014 ACTAGACCCAATTATATTCACATGGCAC
1 ACTAGACCCAATTATATTCACATGGCAC
81102042 ACTAGACCCAATTATATTCACATGGC
1 ACTAGACCCAATTATATTCACATGGC
81102068 CCATTAGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (28 bp):
ACTAGACCCAATTATATTCACATGGCAC
Found at i:81102096 original size:29 final size:29
Alignment explanation
Indices: 81102063--81102234 Score: 247
Period size: 29 Copynumber: 6.0 Consensus size: 29
81102053 TTATATTCAC
*
81102063 ATGGCCCATTAGGCCCAAGTCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
81102092 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
81102121 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
81102150 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
* **
81102179 GTGGCCCATTAGGCCCAAATCACATCCAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
* * *
81102208 ACGG-CCATTAGGCCCAATTTACATTTA
1 ATGGCCCATTAGGCCCAAATCACATTTA
81102235 CATTCATGCT
Statistics
Matches: 131, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 19 0.15
29 112 0.85
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTTAT
Found at i:81107996 original size:40 final size:40
Alignment explanation
Indices: 81107941--81108137 Score: 256
Period size: 40 Copynumber: 4.9 Consensus size: 40
81107931 GAATGCTTAA
*
81107941 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
81107981 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGGGC
1 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
81108021 TAGTTACTAATTCCGGGCTAAGTCCCAAAGGCATTTGTGC
1 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
* * *
81108061 GAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTAC
1 TAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGC
* * *
81108101 GAACT-ACT-ATATCCGGGCTAAGTCTCGAAGGCATTTG
1 -TAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTG
81108138 AGCGAGTAGC
Statistics
Matches: 144, Mismatches: 11, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
39 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
Found at i:81108079 original size:80 final size:80
Alignment explanation
Indices: 81107941--81108170 Score: 279
Period size: 80 Copynumber: 2.9 Consensus size: 80
81107931 GAATGCTTAA
* * * *
81107941 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACTA-ATTCCGGGCTAAGTC
1 TAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTC
*
81108005 CCGAAGGCATTTGGGC
65 CCGAAGGCATTTGGAC
*
81108021 TAGTTACTAATTCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 TAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
81108086 CGAAGGCATTTGTAC
66 CGAAGGCATTTGGAC
* ** * * * *
81108101 GAACTACT-ATATCCGGGCTAAGTCTCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAAT
1 TAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGT
81108163 CCCGAAGG
64 CCCGAAGG
81108171 TACTTGGTTT
Statistics
Matches: 132, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
79 18 0.14
80 113 0.86
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
CGAAGGCATTTGGAC
Found at i:81108151 original size:40 final size:39
Alignment explanation
Indices: 81107952--81108170 Score: 239
Period size: 40 Copynumber: 5.5 Consensus size: 39
81107942 AGTGACTAAT
* * *
81107952 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-ACTATA
* *
81107991 TTCCGGGCTAAGTCCCGAAGGCATTTGGGCTAGTTACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATA
* *
81108031 TTCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATA
*
81108072 TCCGGGCTAAGTCCCGAAGGCATTTGTA-CGAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTG-AGCG-AGTACTATA
*
81108112 TCCGGGCTAAGTCTCGAAGGCATTTGAGCGAGTAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTA-CTATA
* *
81108152 TCC-GGTTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
81108171 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 17 0.11
40 140 0.88
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTACTATA
Found at i:81116120 original size:80 final size:80
Alignment explanation
Indices: 81115881--81116139 Score: 348
Period size: 80 Copynumber: 3.2 Consensus size: 80
81115871 AGTGACTAAT
* * *
81115881 TCCGGGCTAAGTCCCGAAGGTATTTGTGC-TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACTAATTCCGGGCTAAGTCCCGAAGGCATT
81115945 TGTGCGAGTTACTA-A
65 TGTGCGAGTTACTATA
** *
81115960 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATT
81116025 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTATA
* *
81116041 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTAAT-TCCGGGCTAAGTCCCGAAGGCATT
*
81116105 TGAGCGAG-TAGCTATA
65 TGTGCGAGTTA-CTATA
* *
81116121 TCC-GGTTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
81116140 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
79 18 0.11
80 142 0.88
81 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:81116125 original size:40 final size:40
Alignment explanation
Indices: 81115875--81116113 Score: 365
Period size: 40 Copynumber: 6.0 Consensus size: 40
81115865 CTTAATAGTG
* * *
81115875 ACTAATTCCGGGCTAAGTCCCGAAGGTATTTGTGCTAGTG
1 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
81115915 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
1 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
81115955 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
1 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
*
81115995 ACTAATTCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
1 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
* **
81116035 ACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAACT
1 ACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
* *
81116075 ACT-ATATCCGGGCTAAGTCCCGAAGGCATGTGAGCGAGT
1 ACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
81116114 AGCTATATCC
Statistics
Matches: 185, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.01
40 183 0.99
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
Found at i:81117898 original size:28 final size:28
Alignment explanation
Indices: 81117855--81117911 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
81117845 CTGTATATAT
81117855 CCCACTAGACCCAATTATATTCACATGG
1 CCCACTAGACCCAATTATATTCACATGG
* *
81117883 CCCACTAGACCTAATTATATTGACATGG
1 CCCACTAGACCCAATTATATTCACATGG
81117911 C
1 C
81117912 ACATTAGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (28 bp):
CCCACTAGACCCAATTATATTCACATGG
Found at i:81117949 original size:29 final size:28
Alignment explanation
Indices: 81117913--81117980 Score: 82
Period size: 29 Copynumber: 2.4 Consensus size: 28
81117903 TGACATGGCA
* * * *
81117913 CATTAGGCCCAAGTCGCATTTATATGGCC
1 CATTAGGCCCAAATCACATTCATAT-GAC
*
81117942 CTTTAGGCCCAAATCACATTCATATGAC
1 CATTAGGCCCAAATCACATTCATATGAC
81117970 CATTAGGCCCA
1 CATTAGGCCCA
81117981 GTTTACATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 12 0.36
29 21 0.64
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (28 bp):
CATTAGGCCCAAATCACATTCATATGAC
Found at i:81118226 original size:16 final size:16
Alignment explanation
Indices: 81118205--81118247 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
81118195 ATAGCCAAAC
*
81118205 TTTCGGCTTTTCAGTA
1 TTTCGGCTTTTCAGCA
*
81118221 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCAGCA
*
81118237 TTTCGCCTTTT
1 TTTCGGCTTTT
81118248 GCCGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.07, C:0.23, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:81121338 original size:40 final size:40
Alignment explanation
Indices: 81121255--81121461 Score: 182
Period size: 40 Copynumber: 5.2 Consensus size: 40
81121245 CGGCATTTAA
* * * * * *
81121255 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
81121295 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
81121335 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
81121375 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
81121415 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
81121455 CCGGATA
1 CCGGATA
81121462 CCATTCCAAT
Statistics
Matches: 138, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 136 0.99
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:81121375 original size:80 final size:80
Alignment explanation
Indices: 81121281--81121461 Score: 218
Period size: 80 Copynumber: 2.3 Consensus size: 80
81121271 GCTCGATTGT
* * *** * * * **
81121281 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
81121346 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
81121361 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
81121426 TACTAGCATAATTGC
66 AACTAGCACAAATGC
81121441 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
81121462 CCATTCCAAT
Statistics
Matches: 84, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:81123295 original size:16 final size:18
Alignment explanation
Indices: 81123269--81123302 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
81123259 TATTAATTTT
81123269 AAAAGGTTAAAT-ATGTA
1 AAAAGGTTAAATAATGTA
81123286 AAAAGG-TAAATAATGTA
1 AAAAGGTTAAATAATGTA
81123303 TATGATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.56, C:0.00, G:0.18, T:0.26
Consensus pattern (18 bp):
AAAAGGTTAAATAATGTA
Found at i:81124275 original size:43 final size:41
Alignment explanation
Indices: 81124202--81124297 Score: 104
Period size: 43 Copynumber: 2.3 Consensus size: 41
81124192 ATATGTGTTC
* *
81124202 TCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ATATGTGAT
1 TCGTGTAAGACCACGTCTGGGACATCGGCATCGTA-AT-TGAT
* * * *
81124244 TACGTGTAAGATCATGTCTGGGCCATCGGCATTGTAATTGAT
1 T-CGTGTAAGACCACGTCTGGGACATCGGCATCGTAATTGAT
81124286 TCGTGTAAGACC
1 TCGTGTAAGACC
81124298 CAATTTGGAC
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
41 10 0.22
42 6 0.13
43 28 0.62
44 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (41 bp):
TCGTGTAAGACCACGTCTGGGACATCGGCATCGTAATTGAT
Found at i:81132231 original size:43 final size:41
Alignment explanation
Indices: 81132147--81132262 Score: 124
Period size: 43 Copynumber: 2.8 Consensus size: 41
81132137 TAGGATTTCG
* * * * **
81132147 ATATGTGTTCTCGTGTAAGACTACGTCTGGGACGTTGGCATC
1 ATATGTGAT-TCGTGTAAGACCATGTCTGGGACATCAGCATC
81132189 AATATGTGATTACGTGTAAGACCATGTCTGGGACATCAGCATC
1 -ATATGTGATT-CGTGTAAGACCATGTCTGGGACATCAGCATC
* * *
81132232 GTATTTGATTCGTGTAAGACCCTGTCTGGGA
1 ATATGTGATTCGTGTAAGACCATGTCTGGGA
81132263 TAGTGGCATC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 20 0.32
42 9 0.14
43 34 0.54
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (41 bp):
ATATGTGATTCGTGTAAGACCATGTCTGGGACATCAGCATC
Found at i:81144520 original size:146 final size:146
Alignment explanation
Indices: 81144256--81144547 Score: 584
Period size: 146 Copynumber: 2.0 Consensus size: 146
81144246 AAAGGAATCA
81144256 ACTAATCCAATGCATATACGAAACATACCTCATCATTGGGATTTTACGAGCATATTAATTGAAAT
1 ACTAATCCAATGCATATACGAAACATACCTCATCATTGGGATTTTACGAGCATATTAATTGAAAT
81144321 TATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGGGCTTTAACCGGATATAGCCACTC
66 TATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGGGCTTTAACCGGATATAGCCACTC
81144386 GCTCAAATGCCTTCGG
131 GCTCAAATGCCTTCGG
81144402 ACTAATCCAATGCATATACGAAACATACCTCATCATTGGGATTTTACGAGCATATTAATTGAAAT
1 ACTAATCCAATGCATATACGAAACATACCTCATCATTGGGATTTTACGAGCATATTAATTGAAAT
81144467 TATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGGGCTTTAACCGGATATAGCCACTC
66 TATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGGGCTTTAACCGGATATAGCCACTC
81144532 GCTCAAATGCCTTCGG
131 GCTCAAATGCCTTCGG
81144548 GACTTAGCCC
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
146 146 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (146 bp):
ACTAATCCAATGCATATACGAAACATACCTCATCATTGGGATTTTACGAGCATATTAATTGAAAT
TATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGGGCTTTAACCGGATATAGCCACTC
GCTCAAATGCCTTCGG
Found at i:81144563 original size:40 final size:40
Alignment explanation
Indices: 81144516--81144679 Score: 233
Period size: 40 Copynumber: 4.1 Consensus size: 40
81144506 CGGGCTTTAA
* *
81144516 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
* *
81144556 CCGGATATAGT-AGTTCGCACAAATGCCTTTGGGACTTAGC
1 CCGGATATAGTCA-CTCGCACAAATGCCTTCGGGACTTAGC
*
81144596 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
* *
81144636 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGAGACTTAGC
1 CCGGATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGC
81144676 CCGG
1 CCGG
81144680 TTATCATCCG
Statistics
Matches: 112, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 2 0.02
40 109 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:81150285 original size:34 final size:32
Alignment explanation
Indices: 81150234--81150327 Score: 100
Period size: 34 Copynumber: 2.8 Consensus size: 32
81150224 AAGCCCATTA
* **
81150234 GGCCTAAGCCCTATTCAGATAACAGTGGGTACTG
1 GGCCTAAGCCCTTTTCAGATAACAGT--AAACTG
*
81150268 GGCCGAAGCCCTTTTCAGAATAA-AGTAAACTG
1 GGCCTAAGCCCTTTTCAG-ATAACAGTAAACTG
*
81150300 GGCCTTAGCCCCTTTTCAGATAACAGTA
1 GGCCTAAG-CCCTTTTCAGATAACAGTA
81150328 TGGCACATAA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
32 14 0.27
33 14 0.27
34 19 0.37
35 4 0.08
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (32 bp):
GGCCTAAGCCCTTTTCAGATAACAGTAAACTG
Found at i:81150310 original size:32 final size:33
Alignment explanation
Indices: 81150264--81150327 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
81150254 AACAGTGGGT
81150264 ACTGGGCCGAAG-CCCTTTTCAGAATAA-AGTAA
1 ACTGGGCCGAAGCCCCTTTTCAG-ATAACAGTAA
**
81150296 ACTGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTCAGATAACAGTA
81150328 TGGCACATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTCAGATAACAGTAA
Found at i:81155165 original size:42 final size:42
Alignment explanation
Indices: 81155105--81155373 Score: 322
Period size: 42 Copynumber: 6.4 Consensus size: 42
81155095 CTCGATTTGA
* * *
81155105 GATTTACGTGTAAGACCATGTTTGGGACATCAGCATCGTATTT
1 GATTT-CGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
*
81155148 GATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * * *
81155190 CATTTCGTGTAAGACCATGTCTGGAATATCGGCATCGTTTCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * * * *
81155232 CATTTCGTGTAAAACCATGTCTGGGACATCAGCACCATATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * *
81155274 GATTTCGTGTAAGACCATGTCTGAGACATCGTCATTGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * * * * * *
81155316 GATTTTGTGTAAGACCATGTCTAGGATATTGGAATCATATTT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
81155358 GATTTCGTGTAAGACC
1 GATTTCGTGTAAGACC
81155374 CTATTCGGGA
Statistics
Matches: 191, Mismatches: 35, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
42 186 0.97
43 5 0.03
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
Found at i:81155262 original size:126 final size:127
Alignment explanation
Indices: 81155106--81155337 Score: 358
Period size: 126 Copynumber: 1.8 Consensus size: 127
81155096 TCGATTTGAG
* * * * *
81155106 ATTTACGTGTAAGACCATGTTTGGGACATCAGCATCGTATTTGATTTCATGTAAGACCATGTCTG
1 ATTTACGTGTAAAACCATGTCTGGGACATCAGCACCATATCTGATTTCATGTAAGACCATGTCTG
*
81155171 GGACATCGGCATCGTATCTCATTTCGTGTAAGACCATGTCTGGAATATCGGCATCGTTTCTC
66 AGACATCGGCATCGTATCTCATTTCGTGTAAGACCATGTCTGGAATATCGGCATCGTTTCTC
*
81155233 ATTT-CGTGTAAAACCATGTCTGGGACATCAGCACCATATCTGATTTCGTGTAAGACCATGTCTG
1 ATTTACGTGTAAAACCATGTCTGGGACATCAGCACCATATCTGATTTCATGTAAGACCATGTCTG
* * * *
81155297 AGACATCGTCATTGTATCTGATTTTGTGTAAGACCATGTCT
66 AGACATCGGCATCGTATCTCATTTCGTGTAAGACCATGTCT
81155338 AGGATATTGG
Statistics
Matches: 94, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
126 90 0.96
127 4 0.04
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (127 bp):
ATTTACGTGTAAAACCATGTCTGGGACATCAGCACCATATCTGATTTCATGTAAGACCATGTCTG
AGACATCGGCATCGTATCTCATTTCGTGTAAGACCATGTCTGGAATATCGGCATCGTTTCTC
Found at i:81158705 original size:27 final size:26
Alignment explanation
Indices: 81158663--81158714 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
81158653 GCGAGGCTGC
*
81158663 CAGATATTGTGACGAGGTCACCAGAA
1 CAGATATTGTGACGAGGCCACCAGAA
*
81158689 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAGGCCACCAGA
81158715 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAGGCCACCAGAA
Found at i:81161741 original size:42 final size:42
Alignment explanation
Indices: 81161689--81162000 Score: 390
Period size: 42 Copynumber: 7.4 Consensus size: 42
81161679 TGAGATTTGC
*
81161689 GTGTAAGACCATGTCTGGGACATCGGCATCATATCTGGTTTT
1 GTGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTT
* *
81161731 GTGTAAGACCATGTCTGGGACATCGGCATCATATCTAATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTT
** * * * *
81161773 GTGTAAGACCATGTCTAAGACATCAGCATCGTATCTAATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTT
*
81161815 GTGTAAGACCATGTCTGGGACATTGGCATCATATCTGATTTT
1 GTGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTT
* * * * *
81161857 GTGTAAGACCATGCCTGGGACATTGGTATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTT
* * * * *
81161899 ATGGAAGACCATGTCTGGGACATCGACATCGTATCTAATTTT
1 GTGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTT
* * * *
81161941 GTGTAAGACCATGTTTGAGACATTGGCGTCATATCTGATTTT
1 GTGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTT
* *
81161983 GTTTAAGACCCTGTCTGG
1 GTGTAAGACCATGTCTGG
81162001 TACAGAGGCA
Statistics
Matches: 231, Mismatches: 39, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 231 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTT
Found at i:81161795 original size:84 final size:84
Alignment explanation
Indices: 81161683--81162036 Score: 395
Period size: 84 Copynumber: 4.2 Consensus size: 84
81161673 TCGATTTGAG
* * *
81161683 ATTTGCGTGTAAGACCATGTCTGGGACATCGGCATCATATCTGGTTTTGTGTAAGACCATGTCTG
1 ATTT-CGTGTAAGACCATGTCTGAGACATCGGCATCATATCTGATTTCGTGTAAGACCATGTCTG
81161748 GGACATCGGCATCATATCTA
65 GGACATCGGCATCATATCTA
* * * *
81161768 ATTTCGTGTAAGACCATGTCTAAGACATCAGCATCGTATCTAATTTCGTGTAAGACCATGTCTGG
1 ATTTCGTGTAAGACCATGTCTGAGACATCGGCATCATATCTGATTTCGTGTAAGACCATGTCTGG
* *
81161833 GACATTGGCATCATATCTG
66 GACATCGGCATCATATCTA
* * * * * * * *
81161852 ATTTTGTGTAAGACCATGCCTGGGACATTGGTATCGTATCTGATTTCATGGAAGACCATGTCTGG
1 ATTTCGTGTAAGACCATGTCTGAGACATCGGCATCATATCTGATTTCGTGTAAGACCATGTCTGG
* *
81161917 GACATCGACATCGTATCTA
66 GACATCGGCATCATATCTA
* * * * * * *
81161936 ATTTTGTGTAAGACCATGTTTGAGACATTGGCGTCATATCTGATTTTGTTTAAGACCCTGTCTGG
1 ATTTCGTGTAAGACCATGTCTGAGACATCGGCATCATATCTGATTTCGTGTAAGACCATGTCTGG
* **
81162001 TACAGAGGCATCGATA-CTGA
66 GACATCGGCATC-ATATCT-A
* *
81162021 ATTACATGTAAGACCA
1 ATTTCGTGTAAGACCA
81162037 CGTTCGGGAC
Statistics
Matches: 225, Mismatches: 42, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
84 205 0.91
85 20 0.09
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (84 bp):
ATTTCGTGTAAGACCATGTCTGAGACATCGGCATCATATCTGATTTCGTGTAAGACCATGTCTGG
GACATCGGCATCATATCTA
Found at i:81161913 original size:126 final size:126
Alignment explanation
Indices: 81161683--81162036 Score: 451
Period size: 126 Copynumber: 2.8 Consensus size: 126
81161673 TCGATTTGAG
* * *
81161683 ATTTGCGTGTAAGACCATGTCTGGGACATCGGCATCATATCTGGTTTTGTGTAAGACCATGTCTG
1 ATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCATATCTGATTTTGTGTAAGACCATGCCTG
* *
81161748 GGACATCGGCATCATATCTAATTTCGTGTAAGACCATGTCTAAGACATC-AGCATCGTATCTA
65 GGACATCGGCATCATATCTAATTTCATGGAAGACCATGTCTAAGACATCGA-CATCGTATCTA
81161810 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCATATCTGATTTTGTGTAAGACCATGCCTGG
1 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCATATCTGATTTTGTGTAAGACCATGCCTGG
* * * * **
81161875 GACATTGGTATCGTATCTGATTTCATGGAAGACCATGTCTGGGACATCGACATCGTATCTA
66 GACATCGGCATCATATCTAATTTCATGGAAGACCATGTCTAAGACATCGACATCGTATCTA
* * * * * * *
81161936 ATTTTGTGTAAGACCATGTTTGAGACATTGGCGTCATATCTGATTTTGTTTAAGACCCTGTCTGG
1 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCATATCTGATTTTGTGTAAGACCATGCCTGG
* ** * *
81162001 TACAGAGGCATCGATA-CTGAATTACATGTAAGACCA
66 GACATCGGCATC-ATATCT-AATTTCATGGAAGACCA
81162037 CGTTCGGGAC
Statistics
Matches: 198, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
126 177 0.89
127 21 0.11
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (126 bp):
ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCATATCTGATTTTGTGTAAGACCATGCCTGG
GACATCGGCATCATATCTAATTTCATGGAAGACCATGTCTAAGACATCGACATCGTATCTA
Found at i:81165263 original size:29 final size:29
Alignment explanation
Indices: 81165230--81165361 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
81165220 CCTTCGAGCT
** * *
81165230 CGCACACCCAGTGCCGTATATTTTCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
81165259 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
81165288 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81165317 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81165346 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81165362 ATCTTGTCAC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81165264 original size:58 final size:58
Alignment explanation
Indices: 81165201--81165361 Score: 171
Period size: 58 Copynumber: 2.8 Consensus size: 58
81165191 GATTTAAGCC
* * * * *
81165201 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTTCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCA
* * * **
81165259 TGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
* * * **
81165317 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCA
81165362 ATCTTGTCAC
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
58 89 0.99
59 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
Found at i:81165293 original size:87 final size:87
Alignment explanation
Indices: 81165202--81165361 Score: 221
Period size: 87 Copynumber: 1.8 Consensus size: 87
81165192 ATTTAAGCCC
* * * * * *
81165202 GCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATATTTTCAGCATGCACACT
1 GCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACT
81165267 TAGTGCCATATATTTCCAGCAT
66 TAGTGCCATATATTTCCAGCAT
* * * **
81165289 GCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACACT
1 GCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACT
81165354 TAGTGCCA
66 TAGTGCCA
81165362 ATCTTGTCAC
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 62 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (87 bp):
GCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACT
TAGTGCCATATATTTCCAGCAT
Found at i:81168932 original size:67 final size:69
Alignment explanation
Indices: 81168861--81169057 Score: 281
Period size: 71 Copynumber: 2.8 Consensus size: 69
81168851 ACACCCTGTA
* * * * *
81168861 GTAGCTAGGTCACATGCGTGAT-ACGAGATGTA-TCCATGTAGACAAGAGAGCTACGTGAAAGAT
1 GTAGCTAGGTCGCATGCGTGATCAAGAGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAGAT
81168924 AAAT
66 AAAT
*
81168928 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGA-T-CAAGAGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
81168993 ATAAAT
64 ATAAAT
*
81168999 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGA-T-CAAGAGAAGGACACCATGTAGACAAGAGAGCTACG
81169058 AGACAAATCG
Statistics
Matches: 120, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
67 20 0.17
68 1 0.01
70 6 0.05
71 93 0.77
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (69 bp):
GTAGCTAGGTCGCATGCGTGATCAAGAGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAGAT
AAAT
Found at i:81168971 original size:41 final size:41
Alignment explanation
Indices: 81168926--81169043 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81168916 TGAAAGATAA
81168926 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81168967 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81168997 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81169038 ATGTAG
1 ATGTAG
81169044 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81168985 original size:71 final size:71
Alignment explanation
Indices: 81168894--81169057 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81168884 CGAGATGTAT
81168894 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81168959 AGGACA
66 AGGACA
81168965 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81169030 AGGACA
66 AGGACA
81169036 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81169058 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81176471 original size:68 final size:70
Alignment explanation
Indices: 81176399--81176596 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
81176389 ACACCCTGTA
* * * *
81176399 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
81176461 ATAAAT
65 ATAAAT
*
81176467 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
81176532 ATAAAT
65 ATAAAT
*
81176538 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
81176597 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:81176510 original size:41 final size:41
Alignment explanation
Indices: 81176465--81176582 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81176455 TGAAAGATAA
81176465 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81176506 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81176536 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81176577 ATGTAG
1 ATGTAG
81176583 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81176522 original size:71 final size:71
Alignment explanation
Indices: 81176433--81176596 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81176423 GAGATGTATC
81176433 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81176498 AGGACA
66 AGGACA
81176504 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81176569 AGGACA
66 AGGACA
81176575 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81176597 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81183054 original size:68 final size:70
Alignment explanation
Indices: 81182982--81183179 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
81182972 ACACCCTGTA
* * * *
81182982 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
81183044 ATAAAT
65 ATAAAT
*
81183050 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
81183115 ATAAAT
65 ATAAAT
*
81183121 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
81183180 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:81183093 original size:41 final size:41
Alignment explanation
Indices: 81183048--81183165 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81183038 TGAAAGATAA
81183048 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81183089 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81183119 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81183160 ATGTAG
1 ATGTAG
81183166 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81183105 original size:71 final size:71
Alignment explanation
Indices: 81183016--81183179 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81183006 GAGATGTATC
81183016 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81183081 AGGACA
66 AGGACA
81183087 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81183152 AGGACA
66 AGGACA
81183158 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81183180 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81190618 original size:68 final size:70
Alignment explanation
Indices: 81190546--81190743 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
81190536 ACACCCTGTA
* * * *
81190546 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
81190608 ATAAAT
65 ATAAAT
*
81190614 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
81190679 ATAAAT
65 ATAAAT
*
81190685 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
81190744 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:81190657 original size:41 final size:41
Alignment explanation
Indices: 81190612--81190729 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81190602 TGAAAGATAA
81190612 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81190653 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81190683 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81190724 ATGTAG
1 ATGTAG
81190730 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81190669 original size:71 final size:71
Alignment explanation
Indices: 81190580--81190743 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81190570 GAGATGTATC
81190580 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81190645 AGGACA
66 AGGACA
81190651 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81190716 AGGACA
66 AGGACA
81190722 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81190744 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Done.