Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 261 of 433
Found at i:81198184 original size:68 final size:70
Alignment explanation
Indices: 81198112--81198309 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
81198102 ACACCCTGTA
* * * *
81198112 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
81198174 ATAAAT
65 ATAAAT
*
81198180 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
81198245 ATAAAT
65 ATAAAT
*
81198251 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
81198310 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:81198223 original size:41 final size:41
Alignment explanation
Indices: 81198178--81198295 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81198168 TGAAAGATAA
81198178 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81198219 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81198249 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81198290 ATGTAG
1 ATGTAG
81198296 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81198235 original size:71 final size:71
Alignment explanation
Indices: 81198146--81198309 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81198136 GAGATGTATC
81198146 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81198211 AGGACA
66 AGGACA
81198217 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81198282 AGGACA
66 AGGACA
81198288 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81198310 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81205298 original size:28 final size:29
Alignment explanation
Indices: 81205260--81205352 Score: 161
Period size: 29 Copynumber: 3.2 Consensus size: 29
81205250 TCGCACACCC
*
81205260 AGTGCCGTATATTTCCAGCATGCAC-CTT
1 AGTGCCATATATTTCCAGCATGCACACTT
81205288 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
81205317 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
81205346 AGTGCCA
1 AGTGCCA
81205353 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
28 24 0.39
29 38 0.61
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:81207129 original size:40 final size:40
Alignment explanation
Indices: 81207085--81207160 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
81207075 TAGTGCCTCA
*
81207085 TATAGCCAAAGCTA-TTTGAATTCACATACTTAGTGCTATT
1 TATAGCCAAAGCTATTTTGAA-TCACACACTTAGTGCTATT
* * *
81207125 TATAGCCGAATCTATTTTGAATCGCACACTTAGTGC
1 TATAGCCAAAGCTATTTTGAATCACACACTTAGTGC
81207161 CAATGTAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 25 0.81
41 6 0.19
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (40 bp):
TATAGCCAAAGCTATTTTGAATCACACACTTAGTGCTATT
Found at i:81209817 original size:58 final size:59
Alignment explanation
Indices: 81209727--81209843 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 59
81209717 CTATGATGCC
81209727 CTAAACATGCATTGAAAGTAGTCAGAGACTAAACTGAGAACCTTAG-AATTTTTGAGAA
1 CTAAACATGCATTGAAAGTAGTCAGAGACTAAACTGAGAACCTTAGAAATTTTTGAGAA
81209785 CTAAACATGCATTGAAAGTAGTCAGAGACTAAACTGAGAACCTTAGAAATTTTTGAGAA
1 CTAAACATGCATTGAAAGTAGTCAGAGACTAAACTGAGAACCTTAGAAATTTTTGAGAA
81209844 AACTTATAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 46 0.79
59 12 0.21
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.26
Consensus pattern (59 bp):
CTAAACATGCATTGAAAGTAGTCAGAGACTAAACTGAGAACCTTAGAAATTTTTGAGAA
Found at i:81209818 original size:28 final size:28
Alignment explanation
Indices: 81209727--81209818 Score: 73
Period size: 28 Copynumber: 3.2 Consensus size: 28
81209717 CTATGATGCC
81209727 CTAAACATGCATTGAAAGTAGTCAGAGA
1 CTAAACATGCATTGAAAGTAGTCAGAGA
* * ** *
81209755 CTAAAC-TGAGAACCTT-AGAATTTTTGAGA-A
1 CTAAACAT--G--CATTGA-AAGTAGTCAGAGA
81209785 CTAAACATGCATTGAAAGTAGTCAGAGA
1 CTAAACATGCATTGAAAGTAGTCAGAGA
81209813 CTAAAC
1 CTAAAC
81209819 TGAGAACCTT
Statistics
Matches: 46, Mismatches: 10, Indels: 16
0.64 0.14 0.22
Matches are distributed among these distances:
27 11 0.24
28 14 0.30
29 2 0.04
30 8 0.17
31 11 0.24
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.24
Consensus pattern (28 bp):
CTAAACATGCATTGAAAGTAGTCAGAGA
Found at i:81217161 original size:42 final size:42
Alignment explanation
Indices: 81217080--81217161 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
81217070 ATGTCAGTGC
* *
81217080 CGATACCATGTCCCAGACATGGTCTTATACAAGACCTCATAT
1 CGATACCATGTCCCAGACATGGTCTTACACAAAACCTCATAT
* ** *
81217122 CGATGCCATGTCTGAGACATGGTCTTACACAAAATCTCAT
1 CGATACCATGTCCCAGACATGGTCTTACACAAAACCTCAT
81217162 CTCAACGCCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (42 bp):
CGATACCATGTCCCAGACATGGTCTTACACAAAACCTCATAT
Found at i:81217172 original size:42 final size:42
Alignment explanation
Indices: 81217085--81217192 Score: 108
Period size: 42 Copynumber: 2.6 Consensus size: 42
81217075 AGTGCCGATA
* * * *
81217085 CCATGTCCCAGACATGGTCTTATACAAGACCTCATATCGATG
1 CCATGTCCCAGACATGGTCTTACACAAAACCTCATATCAACG
** * *
81217127 CCATGTCTGAGACATGGTCTTACACAAAATCTCATCTCAACG
1 CCATGTCCCAGACATGGTCTTACACAAAACCTCATATCAACG
* * * *
81217169 CCATATCCTAGATATTGTCTTACA
1 CCATGTCCCAGACATGGTCTTACA
81217193 TGAAATCACA
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (42 bp):
CCATGTCCCAGACATGGTCTTACACAAAACCTCATATCAACG
Found at i:81217251 original size:48 final size:48
Alignment explanation
Indices: 81217168--81217337 Score: 144
Period size: 48 Copynumber: 3.5 Consensus size: 48
81217158 TCATCTCAAC
* * * ** * *
81217168 GCCATATCCTAGATATTGTCTTACA-TGAAATCACATATCGATACTGAT
1 GCCATATCCCAGACATGGTCTTACACTGGCA-CACATATCAACACTGAT
* * * *
81217216 GTCATATCCCATATATGGTTTTACACTGGCACACATATCAACACTGAT
1 GCCATATCCCAGACATGGTCTTACACTGGCACACATATCAACACTGAT
* * * * * **
81217264 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATCTCGAATGCTGAT
1 GCCATATCCCAGACATGGTCTTACACTGGCACACATATC-AACACTGAT
*
81217313 GCCATGTCCCAGACATGGTCTTACA
1 GCCATATCCCAGACATGGTCTTACA
81217338 TGCGATCTCG
Statistics
Matches: 100, Mismatches: 20, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
48 65 0.65
49 35 0.35
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (48 bp):
GCCATATCCCAGACATGGTCTTACACTGGCACACATATCAACACTGAT
Found at i:81218389 original size:27 final size:26
Alignment explanation
Indices: 81218345--81218396 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
81218335 CTCGCTGCAA
*
81218345 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
81218372 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
81218397 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:81234406 original size:27 final size:26
Alignment explanation
Indices: 81234376--81234503 Score: 125
Period size: 26 Copynumber: 4.8 Consensus size: 26
81234366 ATTACCAAAG
81234376 TACCCTCGATTTAT-AGAATTACTGTTT
1 TACCCTCGA-TTATGA-AATTACTGTTT
* * *
81234403 TACCCTTGATTTATAAAATTACTATTT
1 TACCCTCGA-TTATGAAATTACTGTTT
* *
81234430 TACCCTGGATTGTGAAATTA-TCGTTT
1 TACCCTCGATTATGAAATTACT-GTTT
* *
81234456 TACCCTCGATTGTGAAATTACCGTTT
1 TACCCTCGATTATGAAATTACTGTTT
* *
81234482 TACCCTCAATTGTGAAATTACT
1 TACCCTCGATTATGAAATTACT
81234504 TAAATACCCC
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
25 1 0.01
26 55 0.62
27 31 0.35
28 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.42
Consensus pattern (26 bp):
TACCCTCGATTATGAAATTACTGTTT
Found at i:81234456 original size:26 final size:26
Alignment explanation
Indices: 81234392--81234502 Score: 132
Period size: 26 Copynumber: 4.2 Consensus size: 26
81234382 CGATTTATAG
* * * *
81234392 AATTACTGTTTTACCCTTGATTTATAA
1 AATTACCGTTTTACCCTCGA-TTGTGA
** *
81234419 AATTACTATTTTACCCTGGATTGTGA
1 AATTACCGTTTTACCCTCGATTGTGA
*
81234445 AATTATCGTTTTACCCTCGATTGTGA
1 AATTACCGTTTTACCCTCGATTGTGA
*
81234471 AATTACCGTTTTACCCTCAATTGTGA
1 AATTACCGTTTTACCCTCGATTGTGA
81234497 AATTAC
1 AATTAC
81234503 TTAAATACCC
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 56 0.76
27 18 0.24
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (26 bp):
AATTACCGTTTTACCCTCGATTGTGA
Found at i:81234579 original size:27 final size:27
Alignment explanation
Indices: 81234524--81234582 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
81234514 TATAGGGTAG
**
81234524 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTACAA
81234551 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTACAA
81234578 AATTA
1 AATTA
81234583 AAGAATTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTACAA
Found at i:81234644 original size:27 final size:27
Alignment explanation
Indices: 81234605--81234656 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
81234595 TGACTTTCTA
81234605 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
81234632 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
81234657 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:81235716 original size:67 final size:69
Alignment explanation
Indices: 81235608--81235747 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 69
81235598 GAGGAAGCAT
* * *
81235608 TCTGGCAGCCTCGCTGCAATCTAGTGGCCTCGCCACATATAT-T-TGTTCTGGTGACTTCGTCAC
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCCTCGCCACATATATATCTGTTCTGGTGACCTAGCCAC
81235671 AATA
66 AATA
* * * * *
81235675 TCTGGTAGCCTCGCTGCAATCTGGTGGCTTTGCCACATATATATCTGTTCTGGTGGCCTAGCCAC
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCCTCGCCACATATATATCTGTTCTGGTGACCTAGCCAC
81235740 AATA
66 AATA
81235744 TCTG
1 TCTG
81235748 TATCTGGTGA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 38 0.60
68 1 0.02
69 24 0.38
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (69 bp):
TCTGGCAGCCTCGCTGCAATCTAGTGGCCTCGCCACATATATATCTGTTCTGGTGACCTAGCCAC
AATA
Found at i:81235738 original size:29 final size:27
Alignment explanation
Indices: 81235715--81235774 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
81235705 TGCCACATAT
81235715 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGGCCTAGCCACA
* * * *
81235741 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGGCCTAGCCACA
81235768 ATATCTG
1 ATATCTG
81235775 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGGCCTAGCCACA
Found at i:81235924 original size:6 final size:6
Alignment explanation
Indices: 81235893--81235974 Score: 64
Period size: 6 Copynumber: 13.3 Consensus size: 6
81235883 TTGCATTCAC
* *
81235893 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
81235941 -TTCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATT---CTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
81235975 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
4 2 0.03
5 3 0.05
6 48 0.77
7 6 0.10
8 1 0.02
9 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:81235928 original size:31 final size:31
Alignment explanation
Indices: 81235893--81235965 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
81235883 TTGCATTCAC
*
81235893 ATTCTGATTTTGATTCTGTT-ACCTGATACTG
1 ATTCTGATTCTGATTCT-TTCACCTGATACTG
*
81235924 ATTCTGATTCTGATTCTTTCACCTGATTCTG
1 ATTCTGATTCTGATTCTTTCACCTGATACTG
81235955 ATTCTGATTCT
1 ATTCTGATTCT
81235966 AGTTCTGATA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
30 2 0.05
31 37 0.95
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTTTCACCTGATACTG
Found at i:81242833 original size:50 final size:50
Alignment explanation
Indices: 81242768--81243166 Score: 379
Period size: 50 Copynumber: 7.9 Consensus size: 50
81242758 TAAGACAGTT
* * *
81242768 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * **
81242818 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGGGTACCCGATACC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-TG
* * ** * * *
81242869 TTCGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCTGATGG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * ** * * *
81242919 TAAGGTCACCTGTGTAGTACTATCTGTAGGCTACTATGTGTACTAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * ** *
81242969 TTAGGTCGCATGTGTAGTACTAAGTGAAGGCTACTATGCATACTC-GATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG
* * * *
81243019 CTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCCA-ATGG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTG
* * ** *
81243070 TTAGGTCACATGTGTGGTACTAAGTGCAGGCTACGATATGTACCAAATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
81243120 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
81243167 GAGCTTCGGT
Statistics
Matches: 277, Mismatches: 66, Indels: 12
0.78 0.19 0.03
Matches are distributed among these distances:
49 3 0.01
50 196 0.71
51 77 0.28
52 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:81242925 original size:101 final size:100
Alignment explanation
Indices: 81242768--81243163 Score: 384
Period size: 101 Copynumber: 3.9 Consensus size: 100
81242758 TAAGACAGTT
* * * *
81242768 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGT
* *
81242833 AGTACTAAGTGCAGGCTACTATGGGTACCCGATACC
66 AGTACTAAGTGCAGGCTACTATGTGTACCCGAT-CG
* * ** * * * * *
81242869 TTCGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCTGATGGTAAGGTCACCTGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGT
** * ** *
81242934 AGTACTATCTGTAGGCTACTATGTGTACTAGATTG
66 AGTACTAAGTGCAGGCTACTATGTGTACCCGATCG
* * * * * *
81242969 TTAGGTCGCATGTGTAGTACTAAGTGAAGGCTACT--ATGCATACTC-GATAGCTTCGATCACGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATG--TAC-CAGAT-GGTTAGGTCACAT
* * * *
81243031 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCCAATGG
62 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATCG
* * * * * *
81243070 TTAGGTCACATGTGTGGTACTAAGTGCAGGCTACGATATGTACCAAATTGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGT
*
81243135 AGTACTAAGTGCAGGCTACTATGCGTACC
66 AGTACTAAGTGCAGGCTACTATGTGTACC
81243164 AGAGAGCTTC
Statistics
Matches: 233, Mismatches: 55, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
98 2 0.01
100 72 0.31
101 156 0.67
103 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (100 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTATGTGTACCCGATCG
Found at i:81243172 original size:151 final size:150
Alignment explanation
Indices: 81242768--81243174 Score: 607
Period size: 151 Copynumber: 2.7 Consensus size: 150
81242758 TAAGACAGTT
* *
81242768 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATATGTACCAGATTGTTAGGTCGCATGTGT
* * *
81242833 AGTACTAAGTGCAGGCTACTATGGGTACCCGATACCTTCGATCATGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTA-CCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
**
81242898 GCTACTACGTGTATCTGATGG
130 GCTACTACGTGTATCCAATGG
* * ** * *
81242919 TAAGGTCACCTGTGTAGTACTATCTGTAGGCTACTATGTGTACTAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATATGTACCAGATTGTTAGGTCGCATGTGT
* *
81242984 AGTACTAAGTGAAGGCTACTATGCATACTCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTAC-CGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
81243049 GCTACTACGTGTATCCAATGG
130 GCTACTACGTGTATCCAATGG
* * * *
81243070 TTAGGTCACATGTGTGGTACTAAGTGCAGGCTACGATATGTACCAAATTGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATATGTACCAGATTGTTAGGTCGCATGTGT
*
81243135 AGTACTAAGTGCAGGCTACTATGCGTACCAGAGAGCTTCG
66 AGTACTAAGTGCAGGCTACTATGCGTACC-GATAGCTTCG
81243175 GTTACAAGGG
Statistics
Matches: 227, Mismatches: 27, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
150 2 0.01
151 225 0.99
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (150 bp):
TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATATGTACCAGATTGTTAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGG
CTACTACGTGTATCCAATGG
Found at i:81248970 original size:18 final size:19
Alignment explanation
Indices: 81248937--81248992 Score: 96
Period size: 18 Copynumber: 2.9 Consensus size: 19
81248927 GACAAGAATC
81248937 CCCCATTTTATTTTTCTGAG
1 CCCC-TTTTATTTTTCTGAG
81248957 CCCCTTTT-TTTTTCTGAG
1 CCCCTTTTATTTTTCTGAG
81248975 CCCCTTTTATTTTTCTGA
1 CCCCTTTTATTTTTCTGA
81248993 CTCATTCCCC
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
18 18 0.51
19 13 0.37
20 4 0.11
ACGTcount: A:0.11, C:0.27, G:0.09, T:0.54
Consensus pattern (19 bp):
CCCCTTTTATTTTTCTGAG
Found at i:81257379 original size:27 final size:26
Alignment explanation
Indices: 81257303--81257471 Score: 158
Period size: 27 Copynumber: 6.3 Consensus size: 26
81257293 ATCCATGTTT
** *
81257303 AAAATACTTTGGTTTACAAAATTACC
1 AAAATACCCTGGTTTATAAAATTACC
* * *
81257329 AAAATACCCTGCTTTGTAAAATTACT
1 AAAATACCCTGGTTTATAAAATTACC
*
81257355 AAAATACCATTGGTTTATAAAATTACC
1 AAAATACC-CTGGTTTATAAAATTACC
* *
81257382 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATA-CCCTGGTTTATAAAATTACC
** * *
81257409 AAAATACCCCTAATTTGTAAAATTATC
1 AAAATA-CCCTGGTTTATAAAATTACC
** *
81257436 AAAATACCCCTAATTTGTAAAATTACC
1 AAAATA-CCCTGGTTTATAAAATTACC
81257463 AAAATACCC
1 AAAATACCC
81257472 CTAATTTGTG
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 31 0.25
27 92 0.74
28 2 0.02
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (26 bp):
AAAATACCCTGGTTTATAAAATTACC
Found at i:81257472 original size:27 final size:27
Alignment explanation
Indices: 81257320--81257498 Score: 234
Period size: 27 Copynumber: 6.7 Consensus size: 27
81257310 TTTGGTTTAC
**
81257320 AAAATTACCAAAATA-CCCTGCTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
* ** ** *
81257346 AAAATTACTAAAATACCATTGGTTTAT
1 AAAATTACCAAAATACCCCTAATTTGT
*
81257373 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
81257400 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
*
81257427 AAAATTATCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
81257454 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
* **
81257481 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
81257499 TCGACCTGTA
Statistics
Matches: 136, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 14 0.10
27 122 0.90
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAATTTGT
Found at i:81257509 original size:81 final size:81
Alignment explanation
Indices: 81257372--81257552 Score: 222
Period size: 81 Copynumber: 2.2 Consensus size: 81
81257362 CATTGGTTTA
* **
81257372 TAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCA
1 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAACCTGTAAAATTATCA
*
81257437 AAATACCC-CTAATTTG
66 AAATACCCTC-AACTTG
* ** * *
81257453 TAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATA-CCCTCGACCTGTAAAATTATT
1 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCT-AACCTGTAAAATTATC
* *
81257517 GAAATACCCTCGACTTG
65 AAAATACCCTCAACTTG
*
81257534 TAAAATTACCAAAGTACCC
1 TAAAATTACCAAAATACCC
81257553 TCGATTTATA
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 4 0.05
81 81 0.94
82 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAACCTGTAAAATTATCA
AAATACCCTCAACTTG
Found at i:81257567 original size:27 final size:27
Alignment explanation
Indices: 81257548--81257892 Score: 381
Period size: 27 Copynumber: 12.8 Consensus size: 27
81257538 ATTACCAAAG
81257548 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
81257575 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
81257602 TACCCTCGATTTATAGAATAACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
81257629 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
81257656 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
81257683 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * * *
81257710 TACCC-AGATTTACATAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
81257736 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
81257763 TACCCTAGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
**
81257790 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
81257817 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * **
81257844 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
81257871 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTATAGAATTAC
81257893 TAAAATACCC
Statistics
Matches: 279, Mismatches: 35, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
26 24 0.09
27 254 0.91
28 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:81257758 original size:161 final size:161
Alignment explanation
Indices: 81257555--81257875 Score: 455
Period size: 161 Copynumber: 2.0 Consensus size: 161
81257545 AAGTACCCTC
* ** * *
81257555 GATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTATAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTAGATTTACAGAA
* * *
81257620 TAACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTT
66 TAACCATTTTACCCTCGA-TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTT
*
81257684 ACCCCTAATTTACATAATTACCATTTTACCCA
130 ACCCCTAATTTACAAAATTACCATTTTACCCA
* * *
81257716 GATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTAGATTTACAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTAGATTTACAGAA
* * * *
81257781 TTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACTGTTTTA
66 TAACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTA
* * *
81257846 CCCTTGATTTACAAAATTACTATTTTACCC
131 CCCCTAATTTACAAAATTACCATTTTACCC
81257876 TCGATTTATA
Statistics
Matches: 140, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
161 139 0.99
162 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (161 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTAGATTTACAGAA
TAACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTA
CCCCTAATTTACAAAATTACCATTTTACCCA
Found at i:81257901 original size:27 final size:27
Alignment explanation
Indices: 81257315--81257903 Score: 144
Period size: 27 Copynumber: 21.9 Consensus size: 27
81257305 AATACTTTGG
* * * *
81257315 TTTACAAAATTACCAAAATACCCT-GC
1 TTTATAAAATTACTATAATACCCTCGA
* * * * *
81257341 TTTGTAAAATTACTAAAATACCATTGG
1 TTTATAAAATTACTATAATACCCTCGA
* * *
81257368 TTTATAAAATTACCAAAATACCC-CTA
1 TTTATAAAATTACTATAATACCCTCGA
* * * *
81257394 GTTTGTAAAATTACCAAAATACCC-CTAA
1 -TTTATAAAATTACTATAATACCCTC-GA
* * *
81257422 TTTGTAAAATTA-TCAAAATACCC-CTAA
1 TTTATAAAATTACT-ATAATACCCTC-GA
* * * *
81257449 TTTGTAAAATTACCAAAATACCC-CTAA
1 TTTATAAAATTACTATAATACCCTC-GA
* *
81257476 TTTGTGAAATTACTGA-AATACCCTCGA
1 TTTATAAAATTACT-ATAATACCCTCGA
** * *
81257503 CCTGTAAAATTATTGA-AATACCCTCGA
1 TTTATAAAATTACT-ATAATACCCTCGA
* * *
81257530 CTTGTAAAATTACCA-AAGTACCCTCGA
1 TTTATAAAATTACTATAA-TACCCTCGA
* ** **
81257557 TTTATAGAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACTATAATACCCTCGA
* ** **
81257584 TTTGTAAAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACTATAATACCCTCGA
* * ** **
81257611 TTTATAGAATAACCGTTTTACCCTC-A
1 TTTATAAAATTACTATAATACCCTCGA
* * **
81257637 GTTTACAGAATTACTATTTTACCCTCGA
1 -TTTATAAAATTACTATAATACCCTCGA
* ** ** *
81257665 TTTATAGAATTACCGTTTTACCC-CTAA
1 TTTATAAAATTACTATAATACCCTC-GA
* * * ** *
81257692 TTTACATAATTACCATTTTACCC-AGA
1 TTTATAAAATTACTATAATACCCTCGA
* * *
81257718 TTTACATAATTATCGT-T-TTACCCTCGA
1 TTTATAAAATTA-C-TATAATACCCTCGA
* * ** ** *
81257745 TTTACAGAATTACCGTTTTACCCTAGA
1 TTTATAAAATTACTATAATACCCTCGA
* * * **
81257772 TTTACAGAATTACCATTTTACCCTCGA
1 TTTATAAAATTACTATAATACCCTCGA
* ** *
81257799 TTTATAGAATTACTATTTTACCCTTGA
1 TTTATAAAATTACTATAATACCCTCGA
* * ** *
81257826 TTTACAAAATTACTGTTTTACCCTTGA
1 TTTATAAAATTACTATAATACCCTCGA
* **
81257853 TTTACAAAATTACTATTTTACCCTCGA
1 TTTATAAAATTACTATAATACCCTCGA
*
81257880 TTTATAAAATTACTAAAATACCCT
1 TTTATAAAATTACTATAATACCCT
81257904 TGGTTTGTGA
Statistics
Matches: 478, Mismatches: 68, Indels: 33
0.83 0.12 0.06
Matches are distributed among these distances:
26 46 0.10
27 428 0.90
28 4 0.01
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (27 bp):
TTTATAAAATTACTATAATACCCTCGA
Found at i:81257905 original size:81 final size:81
Alignment explanation
Indices: 81257548--81257894 Score: 430
Period size: 81 Copynumber: 4.3 Consensus size: 81
81257538 ATTACCAAAG
** ** *
81257548 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATT
* * *
81257613 TATAGAATAACCGTTT
66 TACAGAATTACCATTT
* * * * *
81257629 TACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCCTAAT
1 TACCCTCGA-TTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGAT
*
81257693 TTACATAATTACCATTT
65 TTACAGAATTACCATTT
* * * * * *
81257710 TACCC-AGATTTACATAATTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTAGAT
1 TACCCTCGATTTATAGAATTACT-ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGAT
81257773 TTACAGAATTACCATTT
65 TTACAGAATTACCATTT
* *
81257790 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATT
* *
81257855 TACAAAATTACTATTT
66 TACAGAATTACCATTT
*
81257871 TACCCTCGATTTATAAAATTACTA
1 TACCCTCGATTTATAGAATTACTA
81257895 AAATACCCTT
Statistics
Matches: 230, Mismatches: 31, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.00
80 69 0.30
81 159 0.69
82 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATT
TACAGAATTACCATTT
Found at i:81257929 original size:81 final size:81
Alignment explanation
Indices: 81257686--81257930 Score: 210
Period size: 81 Copynumber: 3.0 Consensus size: 81
81257676 ACCGTTTTAC
* * * * ** *
81257686 CCCTA-ATTTACATAATTACCATTTTACCC-AGATTTACATAATTATCGT--TTTACCCTCGATT
1 CCCTAGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTA-C-TAAAATACCCTTGATT
* ***
81257747 TACAGAATTACCGTTTTA
64 TACAAAATTACCGCAATA
* * ***
81257765 CCCTAGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTA
1 CCCTAGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGATTTA
* ***
81257830 CAAAATTACTGTTTTA
66 CAAAATTACCGCAATA
* * * *
81257846 CCCTTGATTTACAAAATTACTATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTG
1 CCCTAGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGATTTA
**
81257911 TGAAATTACCGCAATA
66 CAAAATTACCGCAATA
81257927 CCCT
1 CCCT
81257931 CAATTTGTAA
Statistics
Matches: 140, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 6 0.04
80 24 0.17
81 110 0.79
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (81 bp):
CCCTAGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGATTTA
CAAAATTACCGCAATA
Found at i:81259254 original size:20 final size:20
Alignment explanation
Indices: 81259223--81259281 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
81259213 TAAATATGGT
*
81259223 ATGTTTGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
81259243 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
81259263 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
81259282 GGTAATCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:81259359 original size:24 final size:24
Alignment explanation
Indices: 81259332--81259450 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
81259322 GAGGAAGTGA
*
81259332 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
81259356 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
81259379 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
81259403 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
81259427 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
81259451 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:81259401 original size:47 final size:48
Alignment explanation
Indices: 81259332--81259450 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
81259322 GAGGAAGTGA
81259332 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
81259379 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
81259427 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
81259451 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:81259677 original size:31 final size:31
Alignment explanation
Indices: 81259642--81259705 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
81259632 CGTTTACAGT
81259642 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
81259673 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81259704 AA
1 AA
81259706 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81261181 original size:46 final size:46
Alignment explanation
Indices: 81261131--81261306 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
81261121 TGGTTGAGCA
81261131 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81261177 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81261222 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81261270 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81261307 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81261287 original size:93 final size:93
Alignment explanation
Indices: 81261128--81261298 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
81261118 GGATGGTTGA
* *
81261128 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81261193 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81261221 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81261286 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81261299 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81264292 original size:15 final size:15
Alignment explanation
Indices: 81264253--81264331 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
81264243 GTATCTTGGG
*
81264253 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
81264268 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
81264283 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
81264297 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
81264312 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
81264326 TTTCTT
1 TTTCTT
81264332 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:81264316 original size:29 final size:29
Alignment explanation
Indices: 81264244--81264330 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
81264234 CATAGTATCG
* * * *
81264244 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
81264274 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
81264303 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
81264331 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:81266762 original size:46 final size:46
Alignment explanation
Indices: 81266712--81266887 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81266702 TGGTTGAGCA
81266712 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81266758 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81266803 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81266851 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81266888 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81266868 original size:93 final size:93
Alignment explanation
Indices: 81266709--81266880 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81266699 GGATGGTTGA
* *
81266709 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81266774 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81266802 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81266867 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81266881 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81270921 original size:27 final size:27
Alignment explanation
Indices: 81270862--81271040 Score: 245
Period size: 27 Copynumber: 6.7 Consensus size: 27
81270852 TTTGGTTTAC
81270862 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* ** * *
81270888 AAAATTACTAAAATACCATTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
81270915 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
81270942 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
81270969 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
81270996 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
81271023 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
81271041 TCGACCTGTA
Statistics
Matches: 136, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 14 0.10
27 121 0.89
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:81271051 original size:81 final size:81
Alignment explanation
Indices: 81270862--81271094 Score: 233
Period size: 81 Copynumber: 2.9 Consensus size: 81
81270852 TTTGGTTTAC
* * ** * *
81270862 AAAATTACCAAAATA-CCC-TGCTTTGTAAAATTA-CTAAAATACCATTGGTTTATAAAATTACC
1 AAAATTACCAAAATACCCCGAGC-CTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACC
*
81270924 AAAATACCCCTAGTTTGT
64 AAAATACCCCTAATTTGT
* **
81270942 AAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
81271007 AATACCCCTAATTTGT
66 AATACCCCTAATTTGT
* ** ** * *
81271023 GAAATTACTGAAATACCCTCGA-CCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACC
1 AAAATTACCAAAATACCC-CGAGCCTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTACC
*
81271086 AAAGTACCC
64 AAAATACCC
81271095 TCGATTTATA
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 20 0.15
81 106 0.82
82 4 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:81271054 original size:27 final size:27
Alignment explanation
Indices: 81271024--81271098 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
81271014 CTAATTTGTG
81271024 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
81271051 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
81271078 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
81271099 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:81271110 original size:54 final size:54
Alignment explanation
Indices: 81270914--81271221 Score: 144
Period size: 54 Copynumber: 5.7 Consensus size: 54
81270904 CATTGGTTTA
* * * * * * *
81270914 TAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTCGA-CTTG
* * * * * * * *
81270968 TAAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTC-GACTTG
* * ** * * **
81271022 TGAAATTACTGAAA-TACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTG
1 TAAAATTAC-CAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
*** *
81271076 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTG
1 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
* **** *** *
81271130 TAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTT-
1 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
* ***
81271182 TACAGAATTACTATTTTACCCTCGATTTATAGAATTACCG
1 TA-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCG
81271222 TTTTACCCCT
Statistics
Matches: 213, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.01
53 6 0.03
54 198 0.93
55 7 0.03
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.34
Consensus pattern (54 bp):
TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
Found at i:81271137 original size:81 final size:81
Alignment explanation
Indices: 81271036--81271371 Score: 196
Period size: 81 Copynumber: 4.1 Consensus size: 81
81271026 ATTACTGAAA
** * ** *
81271036 TACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC-GAT
1 TACCCTCGATTTGTAGAATTACCGAAATACCCTCGACTTATAAAATTACCAAAGTACCCTCAG-T
* *
81271100 TTATAGAATTACCGTTT
65 TTACAGAATTACCATTT
*** * * ****
81271117 TACCCTCGATTTGTAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTT
1 TACCCTCGATTTGTAGAATTACCGAAATACCCTCGACTTATAAAATTACCAAAGTACCCTCAGTT
*
81271182 TACAGAATTACTATTT
66 TACAGAATTACCATTT
* *** * * ***
81271198 TACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATT-TACATAATTACCATTTTACCC-CAG
1 TACCCTCGATTTGTAGAATTACCGAAATACCCTCGACTTATA-A-AATTACCAAAGTACCCTCAG
* * *
81271260 ATTTACATAATTATCGTTT
64 -TTTACAGAATTACCATTT
** *** * * * ***
81271279 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTC-GAT
1 TACCCTCGATTTGTAGAATTACCGAAATACCCTCGACTTATAAAATTACCAAAGTACCCTCAG-T
* *
81271343 TTATAGAATTACTATTT
65 TTACAGAATTACCATTT
*
81271360 TACCCTTGATTT
1 TACCCTCGATTT
81271372 ACAAAATTAC
Statistics
Matches: 210, Mismatches: 38, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
79 2 0.01
80 7 0.03
81 194 0.92
82 6 0.03
83 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTGTAGAATTACCGAAATACCCTCGACTTATAAAATTACCAAAGTACCCTCAGTT
TACAGAATTACCATTT
Found at i:81271436 original size:27 final size:27
Alignment explanation
Indices: 81271090--81271435 Score: 437
Period size: 27 Copynumber: 12.8 Consensus size: 27
81271080 ATTACCAAAG
*
81271090 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
81271117 TACCCTCGATTTGTAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
81271144 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
81271171 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
81271198 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
81271225 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
81271252 TACCC-CAGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
81271279 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
81271306 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
81271333 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
81271360 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
81271387 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
81271414 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81271436 TAAAATACCC
Statistics
Matches: 289, Mismatches: 26, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
26 2 0.01
27 285 0.99
28 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:81271472 original size:81 final size:81
Alignment explanation
Indices: 81271144--81271479 Score: 223
Period size: 81 Copynumber: 4.1 Consensus size: 81
81271134 ATTACCGTTT
* * * * *** *
81271144 TACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGA-TTTACAAAATTACTAAAATACCCTTGAT
* * ***
81271208 TTATAGAATTACCGTTT
65 TTACAAAATTACCGCAA
* * * ** *
81271225 TACCC-CTAATTTACATAATTACCATTTTACCC-CAGATTTACATAATTATCGT--TTTACCCTC
1 TACCCTC-GATTTACAAAATTACCATTTTACCCTC-GATTTACAAAATTA-C-TAAAATACCCTT
* ***
81271286 GATTTACAGAATTACCGTTT
62 GATTTACAAAATTACCGCAA
* * * ***
81271306 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATT
* ***
81271371 TACAAAATTACTGTTT
66 TACAAAATTACCGCAA
* ** *
81271387 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATT
***
81271452 TGTGAAATTACCGCAA
66 TACAAAATTACCGCAA
*
81271468 TACCCTCAATTT
1 TACCCTCGATTT
81271480 GTAAAACTAC
Statistics
Matches: 214, Mismatches: 32, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
79 1 0.00
80 3 0.01
81 205 0.96
82 4 0.02
83 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATT
TACAAAATTACCGCAA
Found at i:81272791 original size:20 final size:20
Alignment explanation
Indices: 81272766--81272824 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
81272756 TAAATATGGT
81272766 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
81272786 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
81272806 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
81272825 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:81272902 original size:24 final size:24
Alignment explanation
Indices: 81272875--81272993 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
81272865 GAGGAAGTGA
*
81272875 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
81272899 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
81272922 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
81272946 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
81272970 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
81272994 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:81272944 original size:47 final size:48
Alignment explanation
Indices: 81272875--81272993 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
81272865 GAGGAAGTGA
81272875 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
81272922 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
81272970 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
81272994 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:81273220 original size:31 final size:31
Alignment explanation
Indices: 81273185--81273277 Score: 177
Period size: 31 Copynumber: 3.0 Consensus size: 31
81273175 CGTTTACAGT
81273185 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81273216 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
81273247 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81273278 TATATGAAAA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81275970 original size:24 final size:26
Alignment explanation
Indices: 81275933--81275995 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 26
81275923 ACAATCATAC
**
81275933 ATCACATAAAGGCACAAT-T-ATTTT
1 ATCACATAGGGGCACAATATCATTTT
*
81275957 ATCACATAGGGGCATAATAGTCATTTT
1 ATCACATAGGGGCACAATA-TCATTTT
*
81275984 ATCAAATAGGGG
1 ATCACATAGGGG
81275996 GTCTAGGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 15 0.47
26 1 0.03
27 16 0.50
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (26 bp):
ATCACATAGGGGCACAATATCATTTT
Found at i:81282566 original size:20 final size:19
Alignment explanation
Indices: 81282541--81282593 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
81282531 TGATAGTATT
81282541 TTATTAATTTAATATTAAA
1 TTATTAATTTAATATTAAA
81282560 GTTATT-ATCTTAATATTAAA
1 -TTATTAAT-TTAATATTAAA
81282580 -T-TTAATTTAATATT
1 TTATTAATTTAATATT
81282594 TATCTTCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 10 0.32
18 3 0.10
19 2 0.06
20 16 0.52
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (19 bp):
TTATTAATTTAATATTAAA
Found at i:81283256 original size:20 final size:19
Alignment explanation
Indices: 81283227--81283271 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
81283217 GAGAAACTCT
* *
81283227 TTTTATTGTTTTAATATTA
1 TTTTATTGTTATAATATGA
*
81283246 TTTTATATGTTATAGTATGA
1 TTTTAT-TGTTATAATATGA
81283266 TTTTAT
1 TTTTAT
81283272 GAGTGCATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (19 bp):
TTTTATTGTTATAATATGA
Found at i:81285583 original size:39 final size:39
Alignment explanation
Indices: 81285531--81285876 Score: 458
Period size: 39 Copynumber: 8.9 Consensus size: 39
81285521 ATTTGATGTA
*
81285531 TATCCGGACTTAAGGTCCGCAGGCCTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * ** * *
81285570 TATCTGGACTTAAGGTCCACAAACTTCGCGTTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * *
81285609 TATCCGGAATTAAGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
81285648 TATTCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
81285687 TATCCGGACTTAACGTCCGCAGGCTTCGCGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * *
81285726 TATCCGAACTTAAGATCTGCAGGCATCGCGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
81285765 TATCCGGACTTAAGATCCGTAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
81285804 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
81285843 TATCCAGACTTAAGGTCTGCAGGCTTCGTGCTGG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGG
81285877 TACTATATCT
Statistics
Matches: 264, Mismatches: 43, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 264 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:81288588 original size:26 final size:26
Alignment explanation
Indices: 81288559--81288608 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
81288549 CGGGGCATTC
81288559 TATGTGTAC-GTTT-ATCTTCAGAAGTA
1 TATGTG-ACGGTTTAAT-TTCAGAAGTA
81288585 TATGTGACGGTTTAATTTCAGAAG
1 TATGTGACGGTTTAATTTCAGAAG
81288609 GAATTTTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 18 0.82
27 2 0.09
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (26 bp):
TATGTGACGGTTTAATTTCAGAAGTA
Found at i:81288749 original size:2 final size:2
Alignment explanation
Indices: 81288744--81288786 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
81288734 AATATATACG
* *
81288744 TA TA TA TA TA CA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81288786 T
1 T
81288787 GTGATGCTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:81295210 original size:10 final size:9
Alignment explanation
Indices: 81295195--81295233 Score: 51
Period size: 10 Copynumber: 4.1 Consensus size: 9
81295185 ATATACCTAT
81295195 TTTATAATTA
1 TTTAT-ATTA
*
81295205 TTTATAATA
1 TTTATATTA
81295214 TTTATATTA
1 TTTATATTA
81295223 TGTTATATTA
1 T-TTATATTA
81295233 T
1 T
81295234 AATTTTGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 12 0.46
10 14 0.54
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTATATTA
Found at i:81295233 original size:24 final size:24
Alignment explanation
Indices: 81295202--81295250 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
81295192 TATTTTATAA
81295202 TTATTTATAATATTT-ATAT-TATG
1 TTATTTATAAT-TTTGATATATATG
81295225 TTATATTATAATTTTGATATATATG
1 TTAT-TTATAATTTTGATATATATG
81295250 T
1 T
81295251 ATGAGATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 7 0.30
24 11 0.48
25 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (24 bp):
TTATTTATAATTTTGATATATATG
Found at i:81297802 original size:40 final size:40
Alignment explanation
Indices: 81297719--81297871 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
81297709 TCGAATGATG
* *
81297719 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
81297759 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
81297799 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
81297840 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
81297872 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:81309417 original size:23 final size:23
Alignment explanation
Indices: 81309390--81309436 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
81309380 CTTAATCATC
81309390 AAGCATTCATATTTAAAACTAGA
1 AAGCATTCATATTTAAAACTAGA
81309413 AAGCATTCATATTTAAAACTAGA
1 AAGCATTCATATTTAAAACTAGA
81309436 A
1 A
81309437 CATATCTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.30
Consensus pattern (23 bp):
AAGCATTCATATTTAAAACTAGA
Found at i:81309548 original size:2 final size:2
Alignment explanation
Indices: 81309541--81309575 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
81309531 GAGACTAGTC
81309541 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81309576 AGAAAACAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81310916 original size:68 final size:66
Alignment explanation
Indices: 81310704--81310954 Score: 207
Period size: 68 Copynumber: 3.8 Consensus size: 66
81310694 ATAGTTCAGA
* * *
81310704 TCTCTTGTAC-ACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTA-TCTCGTAG
1 TCTCTTGTACTACATGGTGTACACTCAGTACCACCCATGTGACCTAGCCACATATATTCTTGTAG
81310766 C
66 C
* * * * * *
81310767 TCTCTTGT-CTACATGGTGT-C-CTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCC
1 TCTCTTGTACTACATGGTGTACAC-TCA----GTACCACCCATGTGACCTAGCCACATATATTCT
81310829 T-TAGC
61 TGTAGC
* *
81310834 TCTCTT-TTCTACATGGTGTACACAT-AGTATCACCCATGTGACCTAGCCACATCATAATGTCTT
1 TCTCTTGTACTACATGGTGTACAC-TCAGTACCACCCATGTGACCTAGCCACAT-AT-AT-TCTT
81310897 GTAGC
62 GTAGC
* * ** *
81310902 TCTCTTGTAC-ACATGATGTGCACTCAGTACCATACATGTGACCTAGCTACATA
1 TCTCTTGTACTACATGGTGTACACTCAGTACCACCCATGTGACCTAGCCACATA
81310955 CTATCTGTAT
Statistics
Matches: 147, Mismatches: 24, Indels: 30
0.73 0.12 0.15
Matches are distributed among these distances:
61 1 0.01
62 5 0.03
63 16 0.11
64 21 0.14
65 2 0.01
66 22 0.15
67 29 0.20
68 47 0.32
69 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.31
Consensus pattern (66 bp):
TCTCTTGTACTACATGGTGTACACTCAGTACCACCCATGTGACCTAGCCACATATATTCTTGTAG
C
Found at i:81317568 original size:43 final size:43
Alignment explanation
Indices: 81317514--81317599 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
81317504 GATATATGTG
* * *
81317514 GCATCCTAGCTCGTTGAGTGGTTCAAGTTCATTATAGATGCGA
1 GCATCCGAGCTCGTTGAGTGGTCCAAGTTCATAATAGATGCGA
* *
81317557 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGA
1 GCATCCGAGCTCGTTGAGTGGTCCAAGTTCATAATAGATGCGA
81317600 TACATGTGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGTGGTCCAAGTTCATAATAGATGCGA
Found at i:81325534 original size:42 final size:42
Alignment explanation
Indices: 81325470--81325615 Score: 184
Period size: 42 Copynumber: 3.5 Consensus size: 42
81325460 TCCAAATTCA
** * *
81325470 TTGAGTGGTCCGGGTTCGTGATATATGTGGCATCCTAACTCG
1 TTGAGTGGTCCAAGTTCATGATATATGTGGCATCCTAGCTCG
* *
81325512 TTGAGTGGTCCAGGTTCATGATATATGTGGCATCCTAGCTCA
1 TTGAGTGGTCCAAGTTCATGATATATGTGGCATCCTAGCTCG
* * * * *
81325554 TTGAGTGGTTCAAGTTCATTATAGATGCGAGCATCCGAGCTCG
1 TTGAGTGGTCCAAGTTCATGATATATGTG-GCATCCTAGCTCG
81325597 TTGAGTGGTCCAAGTTCAT
1 TTGAGTGGTCCAAGTTCAT
81325616 AATGGATTCG
Statistics
Matches: 91, Mismatches: 12, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
42 62 0.68
43 29 0.32
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (42 bp):
TTGAGTGGTCCAAGTTCATGATATATGTGGCATCCTAGCTCG
Found at i:81326039 original size:2 final size:2
Alignment explanation
Indices: 81326032--81326065 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
81326022 AAGTATATTC
81326032 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81326066 GAACACTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81333746 original size:11 final size:11
Alignment explanation
Indices: 81333730--81333779 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
81333720 GTTATGATGG
81333730 TATTTTTTAAT
1 TATTTTTTAAT
81333741 TA-TTTTT-AT
1 TATTTTTTAAT
*
81333750 T-TTTAATTAATT
1 TATTT-TTTAA-T
81333762 TATTTTTTAAT
1 TATTTTTTAAT
81333773 TATTTTT
1 TATTTTT
81333780 ATAAGCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
9 5 0.16
10 7 0.22
11 11 0.34
12 6 0.19
13 3 0.09
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TATTTTTTAAT
Found at i:81333754 original size:16 final size:16
Alignment explanation
Indices: 81333733--81333781 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
81333723 ATGATGGTAT
81333733 TTTTTAATTATTTTTA
1 TTTTTAATTATTTTTA
*
81333749 TTTTTAATTA-ATTTA
1 TTTTTAATTATTTTTA
81333764 TTTTTTAATTATTTTTA
1 -TTTTTAATTATTTTTA
81333781 T
1 T
81333782 AAGCATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 4 0.14
16 21 0.72
17 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTAATTATTTTTA
Found at i:81336840 original size:20 final size:20
Alignment explanation
Indices: 81336815--81336868 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
81336805 ATATATATAC
81336815 TAAATAAAATAATAAAATAA
1 TAAATAAAATAATAAAATAA
*** * *
81336835 TAAATATCTTATTAAAATAT
1 TAAATAAAATAATAAAATAA
81336855 TAAAT-AAATAATAA
1 TAAATAAAATAATAA
81336869 TTATCTAATT
Statistics
Matches: 25, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAATAAAATAATAAAATAA
Found at i:81341894 original size:3 final size:3
Alignment explanation
Indices: 81341886--81341931 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
81341876 ACAAGAACAA
81341886 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
81341932 GCCAAATTAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:81344930 original size:13 final size:13
Alignment explanation
Indices: 81344912--81344940 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
81344902 GAAGGTATCG
81344912 ATTATGAAGAAAC
1 ATTATGAAGAAAC
81344925 ATTATGAAGAAAC
1 ATTATGAAGAAAC
81344938 ATT
1 ATT
81344941 CTTTTCAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (13 bp):
ATTATGAAGAAAC
Found at i:81347595 original size:27 final size:27
Alignment explanation
Indices: 81347565--81347616 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
81347555 AATTTTATCG
*
81347565 AAGG-TAAAATTGTCAATAAGTTTACCA
1 AAGGTTAAAATCGTCAA-AAGTTTACCA
*
81347592 AAGGTTAAAATCGTCAAAATTTTAC
1 AAGGTTAAAATCGTCAAAAGTTTAC
81347617 TGGAGTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (27 bp):
AAGGTTAAAATCGTCAAAAGTTTACCA
Found at i:81348084 original size:31 final size:31
Alignment explanation
Indices: 81348046--81348109 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
81348036 ATATTGGGCT
*
81348046 TTCTTGCGTTATGTAACATAGACGTTTGAGA
1 TTCTTGCGTTATGTAACATAGACCTTTGAGA
81348077 TTCTTGCGTTATGTAACATAGACCTTTGAGA
1 TTCTTGCGTTATGTAACATAGACCTTTGAGA
81348108 TT
1 TT
81348110 TTTCTTAACC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (31 bp):
TTCTTGCGTTATGTAACATAGACCTTTGAGA
Found at i:81350895 original size:35 final size:35
Alignment explanation
Indices: 81350850--81350920 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
81350840 AATTCAGTTG
* *
81350850 TAACAGCCTATTTTTAGTCAAATTGGAATAGTGGT
1 TAACAACCTATTTTTAGTCAAATTGGAACAGTGGT
81350885 TAACAACCTATTTTTAGTCAAATTGGAACAGTGGT
1 TAACAACCTATTTTTAGTCAAATTGGAACAGTGGT
81350920 T
1 T
81350921 TCGAGACCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (35 bp):
TAACAACCTATTTTTAGTCAAATTGGAACAGTGGT
Found at i:81352777 original size:16 final size:17
Alignment explanation
Indices: 81352756--81352796 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
81352746 ATACACTCGA
81352756 TAGATTAGCTG-AATTG-
1 TAGATT-GCTGAAATTGT
81352772 TAGATTGCTGAAATTGT
1 TAGATTGCTGAAATTGT
81352789 TAGATTGC
1 TAGATTGC
81352797 ACGTGTGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.17
16 11 0.48
17 8 0.35
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.39
Consensus pattern (17 bp):
TAGATTGCTGAAATTGT
Found at i:81354920 original size:41 final size:39
Alignment explanation
Indices: 81354804--81354948 Score: 148
Period size: 39 Copynumber: 3.6 Consensus size: 39
81354794 ACAATTCCGT
* *
81354804 TATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTTGGC
1 TATGTATGGCACTTAGTGTGCGATTGAA-ATAGCTTCGGC
* * * *
81354844 TATGTGTGG-ATTTAGTGTGCCATTCGAGATAGCTTCGGC
1 TATGTATGGCACTTAGTGTGCGATT-GAAATAGCTTCGGC
* *
81354883 TATGTATGGCACTTAATGTGTGAGATTGAAATAGCTTCGAC
1 TATGTATGGCACTT-A-GTGTGCGATTGAAATAGCTTCGGC
*
81354924 TATGTATTTGGCATTTAGTGTGCGA
1 TATGTA--TGGCACTTAGTGTGCGA
81354949 GAATTCGAGT
Statistics
Matches: 85, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
39 31 0.36
40 12 0.14
41 26 0.31
42 9 0.11
43 7 0.08
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.37
Consensus pattern (39 bp):
TATGTATGGCACTTAGTGTGCGATTGAAATAGCTTCGGC
Found at i:81358766 original size:40 final size:40
Alignment explanation
Indices: 81358711--81358931 Score: 320
Period size: 40 Copynumber: 5.5 Consensus size: 40
81358701 TATTCGGATG
* * *
81358711 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAATTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
81358751 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
81358791 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
81358831 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
** *
81358871 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
81358911 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
81358932 ATACTTGGGT
Statistics
Matches: 169, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.91
41 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:81361391 original size:15 final size:15
Alignment explanation
Indices: 81361371--81361402 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
81361361 TAGGAAAAAG
81361371 AGATTAAATGTACTA
1 AGATTAAATGTACTA
81361386 AGATTAAATGTACTA
1 AGATTAAATGTACTA
81361401 AG
1 AG
81361403 TGATAAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.31
Consensus pattern (15 bp):
AGATTAAATGTACTA
Found at i:81362597 original size:23 final size:23
Alignment explanation
Indices: 81362552--81362597 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
81362542 AGTTGATTTT
*
81362552 AATTTAAAAAAAAATTAATTTGA
1 AATTTAAAAAAAAATTAAGTTGA
*
81362575 AATTTAAAAAAAAATTGAGTTGA
1 AATTTAAAAAAAAATTAAGTTGA
81362598 TTTGATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.33
Consensus pattern (23 bp):
AATTTAAAAAAAAATTAAGTTGA
Found at i:81363476 original size:10 final size:10
Alignment explanation
Indices: 81363461--81363485 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81363451 TTTATAATAA
81363461 ATTTTGATTT
1 ATTTTGATTT
81363471 ATTTTGATTT
1 ATTTTGATTT
81363481 ATTTT
1 ATTTT
81363486 CGATAGATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
ATTTTGATTT
Found at i:81373926 original size:21 final size:20
Alignment explanation
Indices: 81373902--81373940 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81373892 TTATCAAGAA
81373902 CTTATCCAAAATTACTAAACC
1 CTTATCC-AAATTACTAAACC
* *
81373923 CTTATGCAAATTATTAAA
1 CTTATCCAAATTACTAAA
81373941 GAAGGACATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.33
Consensus pattern (20 bp):
CTTATCCAAATTACTAAACC
Found at i:81375746 original size:3 final size:3
Alignment explanation
Indices: 81375738--81375763 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
81375728 TGAAGATCTT
81375738 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
81375764 TCCCAAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:81376620 original size:51 final size:51
Alignment explanation
Indices: 81376556--81376662 Score: 205
Period size: 51 Copynumber: 2.1 Consensus size: 51
81376546 GTTAAGTATA
81376556 CTAAACTTCAGTATGAATAAAGTTCTATTATTTCAATAATTGTTATGTTAG
1 CTAAACTTCAGTATGAATAAAGTTCTATTATTTCAATAATTGTTATGTTAG
*
81376607 CTAAACTTCAGTATGAATAAAGTTCTATTATTTCAATAATTTTTATGTTAG
1 CTAAACTTCAGTATGAATAAAGTTCTATTATTTCAATAATTGTTATGTTAG
81376658 CTAAA
1 CTAAA
81376663 TTATGACATA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.43
Consensus pattern (51 bp):
CTAAACTTCAGTATGAATAAAGTTCTATTATTTCAATAATTGTTATGTTAG
Found at i:81379711 original size:19 final size:19
Alignment explanation
Indices: 81379687--81379725 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
81379677 ATAATAGACG
81379687 TAATTAGAATTTCTAAACA
1 TAATTAGAATTTCTAAACA
81379706 TAATTAGAATTTCTAAACA
1 TAATTAGAATTTCTAAACA
81379725 T
1 T
81379726 CCTTATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (19 bp):
TAATTAGAATTTCTAAACA
Found at i:81381731 original size:17 final size:16
Alignment explanation
Indices: 81381676--81381734 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 16
81381666 TCTCGTACTT
81381676 TTTGGTGAGCTCACAG
1 TTTGGTGAGCTCACAG
* *
81381692 TTTTGTAGAGCTTGCATA-
1 TTTGGT-GAGC-T-CACAG
81381710 TTTGGTGAGCTCACAG
1 TTTGGTGAGCTCACAG
81381726 TCTTGGTGA
1 T-TTGGTGA
81381735 ATTTGTAGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
15 3 0.09
16 7 0.21
17 15 0.44
18 6 0.18
19 3 0.09
ACGTcount: A:0.19, C:0.15, G:0.29, T:0.37
Consensus pattern (16 bp):
TTTGGTGAGCTCACAG
Found at i:81381854 original size:12 final size:12
Alignment explanation
Indices: 81381837--81381870 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
81381827 CCAAAAACAC
81381837 TTAATATTATAA
1 TTAATATTATAA
*
81381849 TTAATATTGTAA
1 TTAATATTATAA
*
81381861 TTAATTTTAT
1 TTAATATTAT
81381871 TTGTTTATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (12 bp):
TTAATATTATAA
Found at i:81382350 original size:19 final size:20
Alignment explanation
Indices: 81382308--81382354 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
81382298 ACGTTAGTTA
* *
81382308 TTTTCCTTCTTTAGTTATTC
1 TTTTTCTTCTTTAGATATTC
81382328 TTTTTCTTCTTT-GATATT-
1 TTTTTCTTCTTTAGATATTC
81382346 TTTTT-TTCT
1 TTTTTCTTCT
81382355 CTTCTTCGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 4 0.16
18 5 0.20
19 5 0.20
20 11 0.44
ACGTcount: A:0.09, C:0.15, G:0.04, T:0.72
Consensus pattern (20 bp):
TTTTTCTTCTTTAGATATTC
Found at i:81386940 original size:18 final size:18
Alignment explanation
Indices: 81386919--81386953 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
81386909 TTTTTCTGAG
81386919 TCATTATATATTTCAAAA
1 TCATTATATATTTCAAAA
81386937 TCATTATATATTTCAAA
1 TCATTATATATTTCAAA
81386954 CTCTTATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (18 bp):
TCATTATATATTTCAAAA
Found at i:81393493 original size:47 final size:49
Alignment explanation
Indices: 81393276--81393578 Score: 465
Period size: 49 Copynumber: 6.3 Consensus size: 49
81393266 GTATGAGATA
81393276 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
81393325 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
81393374 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
81393423 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
81393470 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
81393517 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
81393564 TATAAATGTGATAAG
1 TATATATGTGATAAG
81393579 TCCCGAAGGG
Statistics
Matches: 242, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
47 100 0.41
48 5 0.02
49 137 0.57
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:81398486 original size:42 final size:41
Alignment explanation
Indices: 81398352--81398490 Score: 107
Period size: 42 Copynumber: 3.3 Consensus size: 41
81398342 AAACCACACA
* * ** * *
81398352 GGCAGAGGACATAGGCGTGTGCCAAGGCCGTACGAGTCACAT
1 GGCA-AGGACATGGGCGTGTGCCAAGGCCATGTGAGCCATAT
* * * * * * *
81398394 GGACAAGGAAATGGGTGTATGACGAGGCCATGTAAGCCATAC
1 GG-CAAGGACATGGGCGTGTGCCAAGGCCATGTGAGCCATAT
* *
81398436 GAGTAAGGACATGGGCGTGTGCCTAGGCCATGTGAGCCATAT
1 G-GCAAGGACATGGGCGTGTGCCAAGGCCATGTGAGCCATAT
81398478 GGCCAAGGACATG
1 GG-CAAGGACATG
81398491 TGTAATAACC
Statistics
Matches: 72, Mismatches: 22, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
41 1 0.01
42 68 0.94
43 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.35, T:0.17
Consensus pattern (41 bp):
GGCAAGGACATGGGCGTGTGCCAAGGCCATGTGAGCCATAT
Found at i:81408802 original size:33 final size:33
Alignment explanation
Indices: 81408765--81408830 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
81408755 TTTTGGGTCA
81408765 TGTGGTAACTTTGGAAGGGATCCGAGTTGATCC
1 TGTGGTAACTTTGGAAGGGATCCGAGTTGATCC
81408798 TGTGGTAACTTTGGAAGGGATCCGAGTTGATCC
1 TGTGGTAACTTTGGAAGGGATCCGAGTTGATCC
81408831 CAAGAAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.30
Consensus pattern (33 bp):
TGTGGTAACTTTGGAAGGGATCCGAGTTGATCC
Found at i:81411920 original size:37 final size:37
Alignment explanation
Indices: 81411868--81411938 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
81411858 AATTGCTATG
81411868 ATGGATATAATGTGATGAATGGTTCATTTTGACTGTT
1 ATGGATATAATGTGATGAATGGTTCATTTTGACTGTT
81411905 ATGGATATGAA-GTGATGAATGGTTCATTTTGACT
1 ATGGATAT-AATGTGATGAATGGTTCATTTTGACT
81411939 ATGTTACCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
37 31 0.94
38 2 0.06
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (37 bp):
ATGGATATAATGTGATGAATGGTTCATTTTGACTGTT
Found at i:81422735 original size:27 final size:28
Alignment explanation
Indices: 81422702--81422771 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
81422692 ATAGTGATTC
81422702 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
81422729 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
81422757 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81422772 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81430617 original size:14 final size:14
Alignment explanation
Indices: 81430598--81430630 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
81430588 CCCATACGGG
81430598 TAAATAATAAAAAA
1 TAAATAATAAAAAA
*
81430612 TAAATAATATAAAA
1 TAAATAATAAAAAA
81430626 -AAATA
1 TAAATA
81430631 GGCAATAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
TAAATAATAAAAAA
Found at i:81433850 original size:13 final size:13
Alignment explanation
Indices: 81433832--81433878 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
81433822 TTCTTCCTTC
81433832 TCTTCTCCTTTTT
1 TCTTCTCCTTTTT
*
81433845 TCTTCT-ATTTTCT
1 TCTTCTCCTTTT-T
*
81433858 TTTTCTCCTTCTTT
1 TCTTCTCCTT-TTT
81433872 TCTTCTC
1 TCTTCTC
81433879 TAGCCAATAC
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
12 4 0.15
13 12 0.44
14 9 0.33
15 2 0.07
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (13 bp):
TCTTCTCCTTTTT
Found at i:81436992 original size:11 final size:11
Alignment explanation
Indices: 81436976--81437001 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81436966 ACACACAAAC
81436976 TATCGTACCCT
1 TATCGTACCCT
81436987 TATCGTACCCT
1 TATCGTACCCT
81436998 TATC
1 TATC
81437002 ATGCCCATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.35, G:0.08, T:0.38
Consensus pattern (11 bp):
TATCGTACCCT
Found at i:81441761 original size:40 final size:40
Alignment explanation
Indices: 81441706--81441874 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
81441696 TGAATGATAC
* *
81441706 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
* * *
81441746 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATCATAT
* * * *
81441786 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
* * * *
81441826 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GATCATAT
81441867 CC-GGCTAA
1 CCGGGCTAA
81441875 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 97 0.92
41 8 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
Found at i:81441873 original size:80 final size:80
Alignment explanation
Indices: 81441706--81441874 Score: 216
Period size: 80 Copynumber: 2.1 Consensus size: 80
81441696 TGAATGATAC
* * * *
81441706 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATCATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
*
81441771 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * *
81441786 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
**
81441850 GTGCTTGTGGATTATAT
65 GTGCGAGTGG-TTATAT
81441867 CC-GGCTAA
1 CCGGGCTAA
81441875 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 66 0.86
81 11 0.14
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:81445991 original size:40 final size:40
Alignment explanation
Indices: 81445906--81446056 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
81445896 AATTGAATGA
* * * *
81445906 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
81445946 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
81445987 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
81446026 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
81446057 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:81446070 original size:40 final size:40
Alignment explanation
Indices: 81445943--81446072 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
81445933 ATGCTGGAAA
* * *
81445943 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
81445983 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
81446023 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
81446063 TTATATCCGG
1 TTATATCCGG
81446073 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:81446071 original size:80 final size:80
Alignment explanation
Indices: 81445905--81446072 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
81445895 AAATTGAATG
* *
81445905 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
81445970 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
81445985 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
81446048 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
81446065 ATATCCGG
1 ATATCCGG
81446073 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:81456710 original size:17 final size:19
Alignment explanation
Indices: 81456675--81456712 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
81456665 AACCCAAGCC
*
81456675 TCTCTTTCAGCTTATTTCT
1 TCTCTTTCAGCTTAATTCT
81456694 TCTCTTT-A-CTTAATTCT
1 TCTCTTTCAGCTTAATTCT
81456711 TC
1 TC
81456713 AGCATTGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
18 1 0.06
19 7 0.39
ACGTcount: A:0.13, C:0.26, G:0.03, T:0.58
Consensus pattern (19 bp):
TCTCTTTCAGCTTAATTCT
Found at i:81462708 original size:27 final size:27
Alignment explanation
Indices: 81462678--81462773 Score: 93
Period size: 27 Copynumber: 3.6 Consensus size: 27
81462668 AACACATAAA
*
81462678 AAAAGAATAGCCTTTGTGGTGAAGTCT
1 AAAAGAATAGCCTTTGTGGAGAAGTCT
* * * * *
81462705 AAAAGAATAGCTTTTGTAGAGTATTAT
1 AAAAGAATAGCCTTTGTGGAGAAGTCT
* * *
81462732 AAAAGAATAGCCTTTGTGGCGATGCCT
1 AAAAGAATAGCCTTTGTGGAGAAGTCT
* *
81462759 GAAAGAATAACCTTT
1 AAAAGAATAGCCTTT
81462774 ATGGCATATT
Statistics
Matches: 53, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.30
Consensus pattern (27 bp):
AAAAGAATAGCCTTTGTGGAGAAGTCT
Found at i:81462746 original size:54 final size:54
Alignment explanation
Indices: 81462678--81462813 Score: 157
Period size: 54 Copynumber: 2.5 Consensus size: 54
81462668 AACACATAAA
* * * * *
81462678 AAAAGAATAGCCTTTGTGGTGAAGTCTAAAAGAATAGCTTTTGTAG-AGTATTAT
1 AAAAGAATAGCCTTTGTGGCGAAGTCTAAAAGAATAACCTTTATAGCA-TATTAC
* * * *
81462732 AAAAGAATAGCCTTTGTGGCGATGCCTGAAAGAATAACCTTTATGGCATATTAC
1 AAAAGAATAGCCTTTGTGGCGAAGTCTAAAAGAATAACCTTTATAGCATATTAC
* *
81462786 AAAAGAATAGCTTTTGTGGCGAACTCTA
1 AAAAGAATAGCCTTTGTGGCGAAGTCTA
81462814 GATGATGGAC
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
54 66 0.99
55 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (54 bp):
AAAAGAATAGCCTTTGTGGCGAAGTCTAAAAGAATAACCTTTATAGCATATTAC
Found at i:81462805 original size:27 final size:27
Alignment explanation
Indices: 81462678--81462805 Score: 84
Period size: 27 Copynumber: 4.7 Consensus size: 27
81462668 AACACATAAA
* *
81462678 AAAAGAATAGCCTTTGTGGTGA-AGT-C
1 AAAAGAATAGCCTTTGTGG-CATATTAC
* * *
81462704 TAAAAGAATAGCTTTTGTAG-AGTATTAT
1 -AAAAGAATAGCCTTTGTGGCA-TATTAC
* **
81462732 AAAAGAATAGCCTTTGTGGC-GATGCC
1 AAAAGAATAGCCTTTGTGGCATATTAC
* * *
81462758 TGAAAGAATAACCTTTATGGCATATTAC
1 -AAAAGAATAGCCTTTGTGGCATATTAC
*
81462786 AAAAGAATAGCTTTTGTGGC
1 AAAAGAATAGCCTTTGTGGC
81462806 GAACTCTAGA
Statistics
Matches: 75, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
25 1 0.01
26 2 0.03
27 69 0.92
28 3 0.04
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (27 bp):
AAAAGAATAGCCTTTGTGGCATATTAC
Found at i:81469527 original size:19 final size:19
Alignment explanation
Indices: 81469482--81469528 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
81469472 ATCAAATTAA
*
81469482 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
81469501 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
81469520 AATAAAAAT
1 AATAAAAAT
81469529 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:81469552 original size:31 final size:32
Alignment explanation
Indices: 81469472--81469552 Score: 100
Period size: 31 Copynumber: 2.6 Consensus size: 32
81469462 AAAATTCATT
81469472 ATCAAAT-TAAAATAAA-AATAAAAATATAGA
1 ATCAAATATAAAATAAATAATAAAAATATAGA
81469502 ATCAAA-ACTAAAATAAATAATAAAAAT-TAG-
1 ATCAAATA-TAAAATAAATAATAAAAATATAGA
*
81469532 ATTAAATATAAATATAAATAA
1 ATCAAATATAAA-ATAAATAA
81469553 AATACAGCAA
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
30 15 0.33
31 21 0.47
32 9 0.20
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (32 bp):
ATCAAATATAAAATAAATAATAAAAATATAGA
Found at i:81474745 original size:17 final size:18
Alignment explanation
Indices: 81474712--81474745 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81474702 TATCTCTTAA
81474712 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
81474730 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
81474746 AAAATAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:81475278 original size:14 final size:14
Alignment explanation
Indices: 81475261--81475295 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
81475251 ACCATGGACA
*
81475261 TTAAACCTTAAATC
1 TTAAACCATAAATC
*
81475275 TTAAATCATAAATC
1 TTAAACCATAAATC
81475289 TTAAACC
1 TTAAACC
81475296 CCAAAATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (14 bp):
TTAAACCATAAATC
Found at i:81475795 original size:7 final size:7
Alignment explanation
Indices: 81475783--81475814 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
81475773 ATTTACCTCT
81475783 AAACCCC
1 AAACCCC
*
81475790 AAACCCT
1 AAACCCC
81475797 AAACCCC
1 AAACCCC
81475804 AAACCCC
1 AAACCCC
81475811 AAAC
1 AAAC
81475815 TCTAGGCCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.47, C:0.50, G:0.00, T:0.03
Consensus pattern (7 bp):
AAACCCC
Found at i:81475828 original size:21 final size:21
Alignment explanation
Indices: 81475781--81475829 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
81475771 ATATTTACCT
81475781 CTAAACCCCAAACCCTAAACC
1 CTAAACCCCAAACCCTAAACC
* * **
81475802 CCAAACCCCAAACTCTAGGCC
1 CTAAACCCCAAACCCTAAACC
81475823 CTAAACC
1 CTAAACC
81475830 ATAACCCATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.47, G:0.04, T:0.10
Consensus pattern (21 bp):
CTAAACCCCAAACCCTAAACC
Found at i:81475906 original size:41 final size:41
Alignment explanation
Indices: 81475860--81476083 Score: 322
Period size: 41 Copynumber: 5.5 Consensus size: 41
81475850 TTTTTTTGCA
* * *
81475860 GCGTTTTTCAAAAAACGCCGCTAAAAGCTCGATCTATAGCG
1 GCGTTTCTCCAAAAGCGCCGCTAAAAGCTCGATCTATAGCG
* * *
81475901 ACGTTTCTCTAAAAGCGCCGCTAACAGCTCGATCTATAGCG
1 GCGTTTCTCCAAAAGCGCCGCTAAAAGCTCGATCTATAGCG
*
81475942 GCGTTTCTCCAAAAGCGCCGCTAAAAGCTCAATCTATAGCG
1 GCGTTTCTCCAAAAGCGCCGCTAAAAGCTCGATCTATAGCG
* * * *
81475983 GCGTGTCTCCAAAAGCGCCGCTAAAACCTTGATTTATAGCG
1 GCGTTTCTCCAAAAGCGCCGCTAAAAGCTCGATCTATAGCG
* * *
81476024 GCGTTTCTCCAAAAGCGCTGCTAAAACCTCGATTTATAGCG
1 GCGTTTCTCCAAAAGCGCCGCTAAAAGCTCGATCTATAGCG
81476065 GCGTTTCTCCAAAAGCGCC
1 GCGTTTCTCCAAAAGCGCC
81476084 TATATTGTTC
Statistics
Matches: 165, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 165 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (41 bp):
GCGTTTCTCCAAAAGCGCCGCTAAAAGCTCGATCTATAGCG
Found at i:81476171 original size:41 final size:40
Alignment explanation
Indices: 81476060--81476171 Score: 129
Period size: 41 Copynumber: 2.8 Consensus size: 40
81476050 CCTCGATTTA
** *
81476060 TAGCGGCGTTTCTCCAAAAGCGCCTA-TATTGTTCAGTTTT
1 TAGCGGCGTTTGACCAAAAACGCC-ACTATTGTTCAGTTTT
* *
81476100 TAGTGGCGTTTGAACCAAAAACGCCGCTATTGCTT-AGTTTT
1 TAGCGGCGTTTG-ACCAAAAACGCCACTATTG-TTCAGTTTT
81476141 TAGCGGCGTTTAGACCAAAAACGCCACTATT
1 TAGCGGCGTTT-GACCAAAAACGCCACTATT
81476172 TCTCAATTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
40 10 0.16
41 48 0.79
42 3 0.05
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (40 bp):
TAGCGGCGTTTGACCAAAAACGCCACTATTGTTCAGTTTT
Found at i:81476182 original size:41 final size:41
Alignment explanation
Indices: 81476055--81476182 Score: 118
Period size: 41 Copynumber: 3.1 Consensus size: 41
81476045 TAAAACCTCG
* ** * *
81476055 ATTTATAGCGGCGTTT-CTCCAAAAGCGCCTA-TATTGTTCA
1 ATTTTTAGCGGCGTTTGAACCAAAAACGCC-ACTATTGCTCA
* * * *
81476095 GTTTTTAGTGGCGTTTGAACCAAAAACGCCGCTATTGCTTA
1 ATTTTTAGCGGCGTTTGAACCAAAAACGCCACTATTGCTCA
* *
81476136 GTTTTTAGCGGCGTTT-AGACCAAAAACGCCACTATTTCTCA
1 ATTTTTAGCGGCGTTTGA-ACCAAAAACGCCACTATTGCTCA
81476177 ATTTTT
1 ATTTTT
81476183 TTGGCATTTT
Statistics
Matches: 71, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
40 14 0.20
41 57 0.80
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (41 bp):
ATTTTTAGCGGCGTTTGAACCAAAAACGCCACTATTGCTCA
Found at i:81479917 original size:66 final size:68
Alignment explanation
Indices: 81479841--81480027 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
81479831 TAGTACCACT
*
81479841 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
81479903 CACG
65 CACG
81479907 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
81479972 ATCACG
63 ATCACG
81479978 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
81480028 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:81479952 original size:71 final size:71
Alignment explanation
Indices: 81479864--81480027 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81479854 CGATTTGTCT
81479864 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81479929 CTTTCA
66 CTTTCA
81479935 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81480000 CTTTCA
66 CTTTCA
81480006 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
81480028 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:81480065 original size:71 final size:70
Alignment explanation
Indices: 81479864--81480061 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
81479854 CGATTTGTCT
* * *
81479864 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
81479929 CTTTCA
65 CTTTCA
* * *
81479935 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
81480000 CTTTCA
65 CTTTCA
* *
81480006 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
81480062 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:81487485 original size:66 final size:68
Alignment explanation
Indices: 81487409--81487595 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
81487399 TAGTACCACT
*
81487409 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
81487471 CACG
65 CACG
81487475 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
81487540 ATCACG
63 ATCACG
81487546 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
81487596 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:81487520 original size:71 final size:71
Alignment explanation
Indices: 81487432--81487595 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81487422 CGATTTGTCT
81487432 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81487497 CTTTCA
66 CTTTCA
81487503 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81487568 CTTTCA
66 CTTTCA
81487574 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
81487596 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Done.