Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 262 of 433
Found at i:81487633 original size:71 final size:70
Alignment explanation
Indices: 81487432--81487629 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
81487422 CGATTTGTCT
* * *
81487432 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
81487497 CTTTCA
65 CTTTCA
* * *
81487503 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
81487568 CTTTCA
65 CTTTCA
* *
81487574 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
81487630 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:81489150 original size:48 final size:48
Alignment explanation
Indices: 81489091--81489192 Score: 152
Period size: 48 Copynumber: 2.1 Consensus size: 48
81489081 TATCATATGT
*
81489091 GTTTAACCCTAAC-AGGTAACAAGACACTATTATTCACTATTCATGTAG
1 GTTTATCCCTAACGA-GTAACAAGACACTATTATTCACTATTCATGTAG
* * *
81489139 GTTTATCCCTAACGAGTAACCAGACACTATTATTCATTATTCGTGTAG
1 GTTTATCCCTAACGAGTAACAAGACACTATTATTCACTATTCATGTAG
81489187 GTTTAT
1 GTTTAT
81489193 GTAAACTCAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 48 0.98
49 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (48 bp):
GTTTATCCCTAACGAGTAACAAGACACTATTATTCACTATTCATGTAG
Found at i:81493974 original size:29 final size:29
Alignment explanation
Indices: 81493907--81493976 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
81493897 TCATCGATGA
* *
81493907 ATGAAAAGGAATAGCTTTGGCTATCGAAT
1 ATGAAAAGGGATAACTTTGGCTATCGAAT
* *
81493936 ATGGAAAGGGATAACTTTGGCTATCGATT
1 ATGAAAAGGGATAACTTTGGCTATCGAAT
81493965 ATGAAAAGGGAT
1 ATGAAAAGGGAT
81493977 GTTGACGACC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.37, C:0.09, G:0.27, T:0.27
Consensus pattern (29 bp):
ATGAAAAGGGATAACTTTGGCTATCGAAT
Found at i:81494118 original size:30 final size:30
Alignment explanation
Indices: 81493956--81494186 Score: 134
Period size: 30 Copynumber: 7.7 Consensus size: 30
81493946 ATAACTTTGG
* * *
81493956 CTATCG-ATTATGAAAAGGGATGTTGACGA
1 CTATCGAACTATGAAAAGGGATGGTGATGA
* * * *
81493985 CCAGCGAACTATGAAAAGGGATTGTGACGA
1 CTATCGAACTATGAAAAGGGATGGTGATGA
* *
81494015 CCATCGAACTATGAAAAGGGATGGCT--TTA
1 CTATCGAACTATGAAAAGGGATGG-TGATGA
* * * * *
81494044 GCTATC-AATCTCTAAAAAGGGATAGCT-TTGG
1 -CTATCGAA-CTATGAAAAGGGAT-GGTGATGA
* * *
81494075 CTAACAAATTATGAAAAGGGATGGTGATGA
1 CTATCGAACTATGAAAAGGGATGGTGATGA
* *
81494105 CTATCGAACTATGAAAAAGGATGGTGACGA
1 CTATCGAACTATGAAAAGGGATGGTGATGA
* * * * *
81494135 CCATCAAATTATGAAAAGGGATAGCT--TCGG
1 CTATCGAACTATGAAAAGGGAT-GGTGAT-GA
*
81494165 CTGTCGAACTATGAAAAGGGAT
1 CTATCGAACTATGAAAAGGGAT
81494187 AACTTCGATT
Statistics
Matches: 154, Mismatches: 38, Indels: 19
0.73 0.18 0.09
Matches are distributed among these distances:
29 9 0.06
30 138 0.90
31 7 0.05
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (30 bp):
CTATCGAACTATGAAAAGGGATGGTGATGA
Found at i:81494141 original size:90 final size:89
Alignment explanation
Indices: 81493991--81494186 Score: 225
Period size: 90 Copynumber: 2.2 Consensus size: 89
81493981 ACGACCAGCG
* * * *
81493991 AACTATGAAAAGGGATTGTGACGACCATCGAACTATGAAAAGGGATGGCTTTAGCTATC-AATCT
1 AACTATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAAGGATGGC-TGAGCCATCAAAT-T
* *
81494055 CTAAAAAGGGATAGCTTTGGCTAACA
64 ATAAAAAGGGATAGCTTCGGCTAACA
* * *
81494081 AATTATGAAAAGGGATGGTGATGACTATCGAACTATGAAAAAGGATGG-TGACGACCATCAAATT
1 AACTATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAAGGATGGCTGA-G-CCATCAAATT
* ** *
81494145 ATGAAAAGGGATAGCTTCGGCTGTCG
64 ATAAAAAGGGATAGCTTCGGCTAACA
81494171 AACTATGAAAAGGGAT
1 AACTATGAAAAGGGAT
81494187 AACTTCGATT
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
88 2 0.02
89 1 0.01
90 83 0.93
91 3 0.03
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (89 bp):
AACTATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAAGGATGGCTGAGCCATCAAATTAT
AAAAAGGGATAGCTTCGGCTAACA
Found at i:81494143 original size:60 final size:60
Alignment explanation
Indices: 81493962--81494156 Score: 166
Period size: 60 Copynumber: 3.2 Consensus size: 60
81493952 TTGGCTATCG
* * * * * * *
81493962 ATTATGAAAAGGGATGTTGACGACCAGCGAACTATGAAAAGGGATTGTGACGACCATCGA
1 ATTATGAAAAGGGATGGTGATGACTATCGAACTATGAAAAAGGATGGTGACGACCATCAA
* * * * ** * * *
81494022 ACTATGAAAAGGGATGGCT--TTAGCTATC-AATCTCT-AAAAAGGGATAGCT-TTGGCTAACAA
1 ATTATGAAAAGGGATGG-TGATGA-CTATCGAA-CTATGAAAAA-GGAT-GGTGACGACCATCAA
81494082 ATTATGAAAAGGGATGGTGATGACTATCGAACTATGAAAAAGGATGGTGACGACCATCAA
1 ATTATGAAAAGGGATGGTGATGACTATCGAACTATGAAAAAGGATGGTGACGACCATCAA
81494142 ATTATGAAAAGGGAT
1 ATTATGAAAAGGGAT
81494157 AGCTTCGGCT
Statistics
Matches: 100, Mismatches: 25, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
59 10 0.10
60 79 0.79
61 11 0.11
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (60 bp):
ATTATGAAAAGGGATGGTGATGACTATCGAACTATGAAAAAGGATGGTGACGACCATCAA
Found at i:81494205 original size:120 final size:120
Alignment explanation
Indices: 81493907--81494214 Score: 370
Period size: 120 Copynumber: 2.6 Consensus size: 120
81493897 TCATCGATGA
* *
81493907 ATGAAAAGGAATAGCTTTGGCTATCGAA-TATGGAAAGGGATAACTTTGGCTATCG-ATTATGAA
1 ATGAAAAGGGATAGCTTTGGCTATCGAACTATGAAAAGGGATAACTTTGGCTATCGAATTATGAA
* * * *
81493970 AAGGGATGTTGACGACCAGCGAACTATGAAAAGGGATTGTGACGACCATCGAACT
66 AAGGGATGGTGACGACCAGCGAACTATGAAAAAGGATGGTGACGACCATCAAACT
* * * * * * *
81494025 ATGAAAAGGGATGGCTTTAGCTATC-AATCTCTAAAAAGGGATAGCTTTGGCTAACAAATTATGA
1 ATGAAAAGGGATAGCTTTGGCTATCGAA-CTATGAAAAGGGATAACTTTGGCTATCGAATTATGA
* * * *
81494089 AAAGGGATGGTGATGACTATCGAACTATGAAAAAGGATGGTGACGACCATCAAATT
65 AAAGGGATGGTGACGACCAGCGAACTATGAAAAAGGATGGTGACGACCATCAAACT
* * * ** * *
81494145 ATGAAAAGGGATAGCTTCGGCTGTCGAACTATGAAAAGGGATAACTTCGATTATTGAATTACGAA
1 ATGAAAAGGGATAGCTTTGGCTATCGAACTATGAAAAGGGATAACTTTGGCTATCGAATTATGAA
81494210 AAGGG
66 AAGGG
81494215 TTGTATCAAT
Statistics
Matches: 155, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
117 2 0.01
118 22 0.14
119 21 0.14
120 108 0.70
121 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (120 bp):
ATGAAAAGGGATAGCTTTGGCTATCGAACTATGAAAAGGGATAACTTTGGCTATCGAATTATGAA
AAGGGATGGTGACGACCAGCGAACTATGAAAAAGGATGGTGACGACCATCAAACT
Found at i:81494211 original size:30 final size:30
Alignment explanation
Indices: 81493907--81494214 Score: 96
Period size: 30 Copynumber: 10.3 Consensus size: 30
81493897 TCATCGATGA
* * * *
81493907 ATGAAAAGGAATAGCTTTGGCTATCGAA-T
1 ATGAAAAGGGATAACTTCGACTATCGAATT
* * *
81493936 ATGGAAAGGGATAACTTTGGCTATCG-ATT
1 ATGAAAAGGGATAACTTCGACTATCGAATT
* * * *
81493965 ATGAAAAGGGAT--GTTGACGACCAGCGAACT
1 ATGAAAAGGGATAACTT--CGACTATCGAATT
** * * *
81493995 ATGAAAAGGGAT-TGTGACGACCATCGAACT
1 ATGAAAAGGGATAACT-TCGACTATCGAATT
** *
81494025 ATGAAAAGGGATGGCTT-TAGCTATC-AATCT
1 ATGAAAAGGGATAACTTCGA-CTATCGAAT-T
* * * * * * *
81494055 CTAAAAAGGGATAGCTTTGGCTAACAAATT
1 ATGAAAAGGGATAACTTCGACTATCGAATT
** *
81494085 ATGAAAAGGGAT-GGTGAT-GACTATCGAACT
1 ATGAAAAGGGATAACT--TCGACTATCGAATT
* ** * * *
81494115 ATGAAAAAGGAT-GGTGACGACCATCAAATT
1 ATGAAAAGGGATAACT-TCGACTATCGAATT
* * * *
81494145 ATGAAAAGGGATAGCTTCGGCTGTCGAACT
1 ATGAAAAGGGATAACTTCGACTATCGAATT
* *
81494175 ATGAAAAGGGATAACTTCGATTATTGAATT
1 ATGAAAAGGGATAACTTCGACTATCGAATT
*
81494205 ACGAAAAGGG
1 ATGAAAAGGG
81494215 TTGTATCAAT
Statistics
Matches: 212, Mismatches: 52, Indels: 29
0.72 0.18 0.10
Matches are distributed among these distances:
27 2 0.01
28 1 0.00
29 45 0.21
30 155 0.73
31 9 0.04
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATAACTTCGACTATCGAATT
Found at i:81494344 original size:2 final size:2
Alignment explanation
Indices: 81494337--81494363 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
81494327 TAATAACATG
81494337 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
81494364 GAGTTTTCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81502156 original size:55 final size:54
Alignment explanation
Indices: 81502051--81502243 Score: 214
Period size: 55 Copynumber: 3.6 Consensus size: 54
81502041 AGGGTTTAAA
* *
81502051 GATACCATGTAAGACCATGCCAAGGCATGGCAATTGATAAGGTTTC-TAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGC-ATTGATAA-GTTTCATAAGGAAAG
* * *
81502106 GATATCATGTAGGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGAAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTC-ATAAGG-AAAG
* * * * *
81502162 G-T-CTTATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGTAAG
1 GATAC-CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTCATAAGGAAAG
*
81502214 GATACCATGTAAGACCATGTCAAGACATGG
1 GATACCATGTAAGACCATGCCAAGACATGG
81502244 TGTAATATCC
Statistics
Matches: 116, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
52 4 0.03
53 34 0.29
54 12 0.10
55 62 0.53
56 4 0.03
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.24
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTCATAAGGAAAG
Found at i:81507938 original size:40 final size:43
Alignment explanation
Indices: 81507894--81507994 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 43
81507884 CGGCTAAGAA
*
81507894 TGGCACTTAGTGTGCGGTTTGAAATAGCTTCGGC-TA-A-ATG
1 TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCATATATATG
* *
81507934 TGGCACTTGGTGTGCGATTTGAGATAGCTTCGGCTATATATATG
1 TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGC-ATATATATG
*
81507978 TGGCATTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
81507995 AATATTGAGA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 31 0.60
42 2 0.04
43 1 0.02
44 18 0.35
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.35
Consensus pattern (43 bp):
TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCATATATATG
Found at i:81508052 original size:28 final size:28
Alignment explanation
Indices: 81507978--81508052 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 28
81507968 TATATATATG
* *
81507978 TGGCATTTAGTGTGCGAAATATTGAGAA
1 TGGCACTTAGTGTGCGAGATATTGAGAA
* * * *
81508006 TGTCACTTGGTGTGTGAGATATTGAGTA
1 TGGCACTTAGTGTGCGAGATATTGAGAA
*
81508034 TGGCACTTAGTGTACGAGA
1 TGGCACTTAGTGTGCGAGA
81508053 CATCGAAGAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.27, C:0.09, G:0.31, T:0.33
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGATATTGAGAA
Found at i:81510763 original size:2 final size:2
Alignment explanation
Indices: 81510756--81510792 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
81510746 ATACGTAAAC
81510756 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81510793 GTAATCATGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81516931 original size:27 final size:27
Alignment explanation
Indices: 81516901--81516952 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
81516891 AGTACTATAC
*
81516901 TGGTGACTATGTCACATTCACTGTTAT
1 TGGTGACTATGCCACATTCACTGTTAT
* * *
81516928 TGGTGGCTTTGCCACATTTACTGTT
1 TGGTGACTATGCCACATTCACTGTT
81516953 TCTAGTAGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.42
Consensus pattern (27 bp):
TGGTGACTATGCCACATTCACTGTTAT
Found at i:81517214 original size:33 final size:33
Alignment explanation
Indices: 81517136--81517228 Score: 105
Period size: 33 Copynumber: 2.8 Consensus size: 33
81517126 TTAGGCCCAC
* ** *
81517136 ACTGTTATTATATAGGGCTAAGGCTTAGACTAT
1 ACTGTTATTGTATAGGGCTAAGGCCCAAACTAT
** * *
81517169 ACTAATACTGTATAGGGCTAAGGCCCAAACTGT
1 ACTGTTATTGTATAGGGCTAAGGCCCAAACTAT
*
81517202 ACTGTTATTGTATAGGGCTAAAGCCCA
1 ACTGTTATTGTATAGGGCTAAGGCCCA
81517229 GGCTGTTTTG
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (33 bp):
ACTGTTATTGTATAGGGCTAAGGCCCAAACTAT
Found at i:81520353 original size:27 final size:27
Alignment explanation
Indices: 81520323--81520382 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
81520313 GGAAGTACTA
* *
81520323 TACTGGTGACTATGTCACATTCACTGT
1 TACTAGTGACTATGCCACATTCACTGT
* * *
81520350 TACTAGTGGCTTTGCCACATTTACTGT
1 TACTAGTGACTATGCCACATTCACTGT
*
81520377 TTCTAG
1 TACTAG
81520383 CAGCTATGCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (27 bp):
TACTAGTGACTATGCCACATTCACTGT
Found at i:81520657 original size:33 final size:33
Alignment explanation
Indices: 81520566--81520659 Score: 136
Period size: 33 Copynumber: 2.8 Consensus size: 33
81520556 GCCACACTAT
* * *
81520566 TACTGTATAGAGCTAAGGCTCAGACAGTACTGA
1 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
81520599 TACTGTAT-GGCGCTAAGGCCCAGACTGTACTGA
1 TACTGTATAGG-GCTAAGGCCCAGACTGTACTGA
*
81520632 TACTGTATAGGGCTAAAGCCCAGACTGT
1 TACTGTATAGGGCTAAGGCCCAGACTGT
81520660 TTTGTATATT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
32 1 0.02
33 52 0.95
34 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (33 bp):
TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
Found at i:81522452 original size:37 final size:37
Alignment explanation
Indices: 81522393--81522501 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
81522383 AGCTCAGATG
* * *
81522393 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81522430 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
81522467 TAATCTCCGCACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
81522502 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:81522703 original size:48 final size:48
Alignment explanation
Indices: 81522648--81523295 Score: 1152
Period size: 48 Copynumber: 13.5 Consensus size: 48
81522638 ACACATCGCC
*
81522648 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81522696 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
81522744 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81522792 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
81522840 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81522888 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81522936 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
* *
81522984 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
81523032 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATATCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
81523080 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
* *
81523128 TACATATTTCACATTAGCCATTGGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTC--A
* * * * *
81523178 TATATATTTCACATTAGCAATTCGGCTTTACAACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81523226 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81523274 TACATATTTCACATTAGCCATT
1 TACATATTTCACATTAGCCATT
81523296 GAATGATTAG
Statistics
Matches: 575, Mismatches: 23, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
48 532 0.93
50 43 0.07
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
Found at i:81524713 original size:28 final size:28
Alignment explanation
Indices: 81524682--81524772 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
81524672 CTGACTGATT
*
81524682 TCGCACACATAGTGCTTGATTAAAGAAC
1 TCGCACACATAGTGCTTAATTAAAGAAC
* * *
81524710 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTTAATTA-AAGAAC
* * *
81524739 TCGCACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTTAATTAAAGAAC
81524767 TCGCAC
1 TCGCAC
81524773 TCTCAGTGCC
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
27 1 0.02
28 28 0.54
29 22 0.42
30 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTTAATTAAAGAAC
Found at i:81525070 original size:40 final size:40
Alignment explanation
Indices: 81524995--81525419 Score: 593
Period size: 40 Copynumber: 10.7 Consensus size: 40
81524985 CCAGCATGAT
* * *
81524995 TGCTCTTC-GGACCTAGCCCGGTTATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * * *
81525034 TGCTTTTCGGGACTTAACCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * *
81525074 TGCTCTTTGAGACTTAGCCCGGCTATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * *
81525114 TGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
81525154 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
81525194 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
81525233 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
81525273 TGCTCTTCGGGACTTAGCCCGAATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
81525313 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
81525353 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
81525393 TGCTCTTCGGGACTTAGCCCGGATATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
81525420 TATAACTCTC
Statistics
Matches: 341, Mismatches: 43, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
39 42 0.12
40 299 0.88
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
Found at i:81525295 original size:23 final size:23
Alignment explanation
Indices: 81525224--81525296 Score: 59
Period size: 23 Copynumber: 3.4 Consensus size: 23
81525214 GATACATCAC
81525224 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
81525247 TAGCCCGGAT--ACATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
81525264 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
*
81525287 TAGCCCGAAT
1 TAGCACGAAT
81525297 ATAACACCAG
Statistics
Matches: 35, Mismatches: 9, Indels: 12
0.62 0.16 0.21
Matches are distributed among these distances:
17 8 0.23
18 2 0.06
19 3 0.09
21 3 0.09
22 2 0.06
23 17 0.49
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:81525323 original size:199 final size:199
Alignment explanation
Indices: 81524995--81525417 Score: 684
Period size: 199 Copynumber: 2.1 Consensus size: 199
81524985 CCAGCATGAT
* * * * * *
81524995 TGCTCTTCGGACCTAGCCCGGTTATAACACCAGCACGAATGCTTTTCGGGACTTAACCCTGATAT
1 TGCTCTTCGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAACCCGGATAC
* * **
81525060 AACTCTAGCACAAATGCTCTTTGAGACTTAGCCCGGCTATAACACCAGCACAAATGCTCTTCGGG
66 AACACTAGCACAAATGCTCTTCGAGACTTAGCCCGAATATAACACCAGCACAAATGCTCTTCGGG
81525125 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCA
131 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCA
81525190 CAAA
196 CAAA
* * *
81525194 TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
1 TGCTCTTCGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAACCCGGATAC
* * *
81525259 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGAATATAACACCAGCACAAATGCTCTTCGGG
66 AACACTAGCACAAATGCTCTTCGAGACTTAGCCCGAATATAACACCAGCACAAATGCTCTTCGGG
*
81525324 ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCA
131 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCA
81525389 CAAA
196 CAAA
81525393 TGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTC-GGACTTAGCCCGGATA
81525418 TATATAACTC
Statistics
Matches: 206, Mismatches: 17, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
199 190 0.92
200 16 0.08
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.22
Consensus pattern (199 bp):
TGCTCTTCGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAACCCGGATAC
AACACTAGCACAAATGCTCTTCGAGACTTAGCCCGAATATAACACCAGCACAAATGCTCTTCGGG
ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCA
CAAA
Found at i:81526788 original size:37 final size:37
Alignment explanation
Indices: 81526681--81526789 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
81526671 AGCTCAGATG
* * * *
81526681 AAATCTCCACATGAAGTTATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81526718 AAATCTCCACACGTAGTCAACGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81526755 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
81526790 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:81526991 original size:48 final size:48
Alignment explanation
Indices: 81526936--81527589 Score: 1110
Period size: 48 Copynumber: 13.5 Consensus size: 48
81526926 ACACATCGCC
*
81526936 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81526984 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
81527032 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81527080 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
81527128 AACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
81527176 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81527224 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
81527272 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
* *
81527320 TACAAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTC----A
* ** *
81527372 TATATATTTCACATTAGCCATTCAACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81527420 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTC----A
* * *
81527472 TATATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81527520 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
81527568 TACATATTTCACATTAGCCATT
1 TACATATTTCACATTAGCCATT
81527590 GAATGATTAG
Statistics
Matches: 575, Mismatches: 23, Indels: 16
0.94 0.04 0.03
Matches are distributed among these distances:
48 486 0.85
52 89 0.15
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
Found at i:81534998 original size:16 final size:16
Alignment explanation
Indices: 81534972--81535014 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
81534962 GTAGATCGAC
* *
81534972 AAAAGCTAAAATGTCG
1 AAAAGCCAAAATGCCG
*
81534988 AAAAGTCAAAATGCCG
1 AAAAGCCAAAATGCCG
81535004 AAAAGCCAAAA
1 AAAAGCCAAAA
81535015 GTTTGGCTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.56, C:0.16, G:0.16, T:0.12
Consensus pattern (16 bp):
AAAAGCCAAAATGCCG
Found at i:81535267 original size:29 final size:29
Alignment explanation
Indices: 81535225--81535349 Score: 155
Period size: 29 Copynumber: 4.3 Consensus size: 29
81535215 GAAAGCATGT
*
81535225 ATATGAATGTGATTTGGGCCTAATGGTCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
81535254 ATATGAATGTGATTTGGATCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
81535283 ATACGAGTGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
81535312 ATATGAA--TAATATTGGGCCTAGTGGGCC
1 ATATGAATGTGAT-TTGGGCCTAATGGGCC
*
81535340 ATATGCATGT
1 ATATGAATGT
81535350 ATGTAGACTT
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
27 3 0.04
28 21 0.26
29 56 0.69
30 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.32
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:81538301 original size:13 final size:13
Alignment explanation
Indices: 81538279--81538311 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81538269 AAGGGTTTGT
81538279 TTAT-TAAACTAA
1 TTATCTAAACTAA
81538291 TTATCTAAACTAA
1 TTATCTAAACTAA
*
81538304 TTAACTAA
1 TTATCTAA
81538312 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:81541242 original size:29 final size:29
Alignment explanation
Indices: 81541196--81541315 Score: 152
Period size: 29 Copynumber: 4.2 Consensus size: 29
81541186 GAAAGCATGT
* * *
81541196 ATATGAATGTGATCTGGGCCTAATGGTCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
*
81541225 ATATGAATATGATTTGGGTCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
* * *
81541254 ATACGAGTGTGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
* *
81541283 ATATGAATAAGA-TTGGGCCTAGTGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
81541311 ATATG
1 ATATG
81541316 CATGTATGTA
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 20 0.26
29 58 0.74
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCCTAATGGGCC
Found at i:81541945 original size:23 final size:23
Alignment explanation
Indices: 81541915--81541969 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
81541905 TATCCCCACA
81541915 TGATGTGTATCGGGGGACAGAGT
1 TGATGTGTATCGGGGGACAGAGT
**
81541938 TGATGTGTATCGGGGGATGGAGT
1 TGATGTGTATCGGGGGACAGAGT
81541961 TGATGTGTA
1 TGATGTGTA
81541970 CCGGTTGGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.20, C:0.05, G:0.44, T:0.31
Consensus pattern (23 bp):
TGATGTGTATCGGGGGACAGAGT
Found at i:81545652 original size:46 final size:46
Alignment explanation
Indices: 81545585--81545760 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
81545575 TGTAACCCGC
* * *
81545585 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
81545631 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCGCAT
* **
81545681 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81545724 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81545761 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 3 0.03
45 2 0.02
46 62 0.56
47 28 0.25
48 2 0.02
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81545707 original size:93 final size:93
Alignment explanation
Indices: 81545593--81545764 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
81545583 GCCCATAAGT
* *
81545593 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGCGAACTCGGACTCAACTCAA
81545658 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * *
81545686 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGCGAACTCGGACTCAACTCAA
*
81545751 CGAGTTCGGATGCC
66 CGAGTTCAGATGCC
81545765 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGCGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:81549153 original size:12 final size:14
Alignment explanation
Indices: 81549138--81549169 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
81549128 GTGAGAACAC
81549138 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
81549150 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
81549164 ATGTGT
1 ATGTGT
81549170 TTAAGACAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:81549254 original size:50 final size:50
Alignment explanation
Indices: 81549135--81549568 Score: 381
Period size: 50 Copynumber: 8.6 Consensus size: 50
81549125 ATTGTGAGAA
* * * * *
81549135 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGACAG-TT-TTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
*
81549187 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * ** * *
81549237 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * * * ** *
81549288 CACGTGTTTAGTACTAAGTGCAAGCTACTAAGTGTATTAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* *
81549338 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATTGTTAGGT
* * * * * * *
81549388 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-TATTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGT
* * * * * * *
81549439 CACGTGTGTAGTACTGAGTGCAGGCTACTACATGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * *
81549489 CACATGTGTAGTACTAAGTGCAGGCTACTAAGTGCACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * *
81549539 CGCATGTGTAATACTAAGTGCATGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
81549569 TGAGTACTAG
Statistics
Matches: 306, Mismatches: 69, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
48 3 0.01
49 7 0.02
50 193 0.63
51 71 0.23
52 32 0.10
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:81549335 original size:101 final size:101
Alignment explanation
Indices: 81549135--81549575 Score: 325
Period size: 101 Copynumber: 4.4 Consensus size: 101
81549125 ATTGTGAGAA
* * * **** * **
81549135 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGACAGTTTTAAGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTTTCGA-TCACGTGTGTAGTA
* * *
81549200 CTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
65 CTAAGTGCAAGCTACTAAGTGTACCAGATGGTTAGGT
* *
81549237 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTTTCGATCACGTGTTTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTTTCGATCACGTGTGTAGTAC
**
81549302 TAAGTGCAAGCTACTAAGTGTATTAGATGGTTAGGT
66 TAAGTGCAAGCTACTAAGTGTACCAGATGGTTAGGT
* * * * * * *
81549338 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCG-AA-TTGATAGGTCGCATGTGTAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTT--TCGATCACGTGTGTAGT
* * * * ** * *
81549400 ACTAAGTGCAGGCTACTATGCGTACCTA-TTAACTTCGAT
64 ACTAAGTGCAAGCTACTAAGTGTACC-AGAT-GGTTAGGT
* * *** * * ** * ** *
81549439 CACGTGTGTAGTACTGAGTGCAGGCTACTACATGTATCAGATGGATAAG-TCACATGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTTTCGATCACGTGTGTAGTAC
* * * *
81549503 TAAGTGCAGGCTACTAAGTGCACCAGATTGATAGGT
66 TAAGTGCAAGCTACTAAGTGTACCAGATGGTTAGGT
* * * *
81549539 CGCATGTGTAATACTAAGTGCATGCTACTATGAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
81549576 TAGAGAGCTT
Statistics
Matches: 269, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
98 2 0.01
99 2 0.01
100 69 0.26
101 152 0.57
102 43 0.16
104 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (101 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTTTCGATCACGTGTGTAGTAC
TAAGTGCAAGCTACTAAGTGTACCAGATGGTTAGGT
Found at i:81549459 original size:151 final size:150
Alignment explanation
Indices: 81549182--81549575 Score: 587
Period size: 151 Copynumber: 2.6 Consensus size: 150
81549172 AAGACAGTTT
*
81549182 TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTA
1 TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTA
* *
81549247 GTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTTTCGATCACGTGTTTAGTACTAAGTGCAAG
66 GTACTAAGTGCAGGCTACTATGCGTA-CCGAAAGCTTCGATCACGTGTGTAGTACTAAGTGCAAG
* *
81549312 CTACTA-AGTGTATTAGATGGT
130 CTACTACA-TGTATCAGATGGA
*
81549333 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATTGATAGGTCGCATGTGT
1 TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATTGATAGGTCGCATGTGT
* *
81549397 AGTACTAAGTGCAGGCTACTATGCGTACCTATTAA-CTTCGATCACGTGTGTAGTACTGAGTGCA
65 AGTACTAAGTGCAGGCTACTATGCGTACCGA--AAGCTTCGATCACGTGTGTAGTACTAAGTGCA
*
81549461 GGCTACTACATGTATCAGATGGA
128 AGCTACTACATGTATCAGATGGA
* * *
81549484 TAAGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGTGCACCAGATTGATAGGTCGCATGTGTA
1 TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTA
* * *
81549549 ATACTAAGTGCATGCTACTATGAGTAC
66 GTACTAAGTGCAGGCTACTATGCGTAC
81549576 TAGAGAGCTT
Statistics
Matches: 222, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
150 4 0.02
151 214 0.96
152 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (150 bp):
TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTA
GTACTAAGTGCAGGCTACTATGCGTACCGAAAGCTTCGATCACGTGTGTAGTACTAAGTGCAAGC
TACTACATGTATCAGATGGA
Found at i:81551521 original size:30 final size:30
Alignment explanation
Indices: 81551466--81551596 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
81551456 ATAGGGAATC
*
81551466 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
81551495 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
81551525 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
81551553 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
81551583 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81551597 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:81551576 original size:58 final size:58
Alignment explanation
Indices: 81551465--81551596 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
81551455 TATAGGGAAT
* * * * *
81551465 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
81551524 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
81551582 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
81551597 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:81553554 original size:178 final size:179
Alignment explanation
Indices: 81553294--81553644 Score: 499
Period size: 178 Copynumber: 2.0 Consensus size: 179
81553284 TCCGAGATCT
*
81553294 GTACCATGAGATAAATAATTTTTAGTAAAGAAAGATCAAAACTGTTGGATAGTGAAACAAGGGTA
1 GTACCATGAGATAAATAATTTTTAGTAAAGAAAGATCAAAACTGTTGGACAGTGAAACAAGGGTA
** *
81553359 TTTTTAATGAGTAAACTGTACTAATTGGAAAAACAAAAAATTCTT-AAAATTTTATGGTAAGAA-
66 AATTTAATGAATAAACTGTACTAATTGGAAAAACAAAAAATT-TTGAAAATTTTATGGTAAGAAG
* * * *
81553422 TATGTGAGTCTAGTTTCTGGGAAAATTAACGGTTCTTAATTTGAAGTCTC
130 TATGCGAGTCTAGTTTCTAGGAAAATTAACAGATCTTAATTTGAAGTCTC
* * * * * * *
81553472 GTACCATGAGATAAATATTTTTTAGTGAAGAGAGGTCGAAACTGTTGGACAGTGAAATAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTAAAGAAAGATCAAAACTGTTGGACAGTGAAACAAGGGTA
** * *
81553537 AATTTAATGAATAAACTGTACTAATTGGCTAAGCCAAAAATTTTGAAAATTTTATGGTAAGAATG
66 AATTTAATGAATAAACTGTACTAATTGGAAAAACAAAAAATTTTGAAAATTTTATGGTAAGAA-G
81553602 TATGCGAGTCTAGTTTCTAGGAAAATTAACAGATCTTAATTTG
130 TATGCGAGTCTAGTTTCTAGGAAAATTAACAGATCTTAATTTG
81553645 GAGTTCCATA
Statistics
Matches: 151, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
177 2 0.01
178 110 0.73
180 39 0.26
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.33
Consensus pattern (179 bp):
GTACCATGAGATAAATAATTTTTAGTAAAGAAAGATCAAAACTGTTGGACAGTGAAACAAGGGTA
AATTTAATGAATAAACTGTACTAATTGGAAAAACAAAAAATTTTGAAAATTTTATGGTAAGAAGT
ATGCGAGTCTAGTTTCTAGGAAAATTAACAGATCTTAATTTGAAGTCTC
Found at i:81555544 original size:21 final size:20
Alignment explanation
Indices: 81555520--81555558 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
81555510 AAACTTGTAT
81555520 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAA-ATTCATA
*
81555541 ATCTATCAAGAAAATTCA
1 ATCTATCAACAAAATTCA
81555559 AAATACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.49, C:0.21, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCTATCAACAAAATTCATA
Found at i:81558618 original size:29 final size:29
Alignment explanation
Indices: 81558585--81558745 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
81558575 GTGACGAGAT
81558585 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
81558614 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
81558643 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
81558672 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
81558701 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
81558730 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81558746 AAATCGAGTA
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 110 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:81564708 original size:41 final size:39
Alignment explanation
Indices: 81564662--81564771 Score: 102
Period size: 38 Copynumber: 2.8 Consensus size: 39
81564652 TAGACCTTGA
81564662 GTCGATGAGACACTGGGTGTCACTA-TTGTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCAC-ACTT-TACTTCGGATAG
* ** * *
81564702 ATTCGATGAGGTACTGGG-ATC-CACTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACACTTTACTTCGGATAG
* *
81564740 GCCGATGAGACACTGGGTGTCA-ACTTTGCTTC
1 GTCGATGAGACACTGGGTGTCACACTTTACTTC
81564772 AAACTATTCG
Statistics
Matches: 55, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
37 13 0.24
38 23 0.42
39 3 0.05
40 2 0.04
41 14 0.25
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCACACTTTACTTCGGATAG
Found at i:81567055 original size:11 final size:11
Alignment explanation
Indices: 81567039--81567114 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
81567029 GATGATTGAT
81567039 ATGATATGCAC
1 ATGATATGCAC
*
81567050 ATGATATG--T
1 ATGATATGCAC
*
81567059 ATGATATCCAC
1 ATGATATGCAC
*
81567070 ATGATATGTAC
1 ATGATATGCAC
81567081 --GATATGCAC
1 ATGATATGCAC
*
81567090 ATGATATG--T
1 ATGATATGCAC
81567099 ATGATATGCAC
1 ATGATATGCAC
81567110 ATGAT
1 ATGAT
81567115 GTATTCATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:81567061 original size:20 final size:20
Alignment explanation
Indices: 81567038--81567114 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
81567028 AGATGATTGA
81567038 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
81567058 TATGATATCCACATGATATG
1 TATGATATGCACATGATATG
*
81567078 TACGATATGCACATGATATG
1 TATGATATGCACATGATATG
81567098 TATGATATGCACATGAT
1 TATGATATGCACATGAT
81567115 GTATTCATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:81567207 original size:25 final size:24
Alignment explanation
Indices: 81567163--81567211 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
81567153 GGAGGAAGTG
*
81567163 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTAGGCCCCAGTTAT
81567187 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTAGGCC-CCAGTTAT
81567212 ATGATAAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (24 bp):
TAAAAGGGCTTAGGCCCCAGTTAT
Found at i:81567441 original size:31 final size:31
Alignment explanation
Indices: 81567406--81567496 Score: 94
Period size: 38 Copynumber: 2.7 Consensus size: 31
81567396 CGTTTACAGT
81567406 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
81567437 AAAGGCTTCGGTCCAGTGTTACGAAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G-T----AATATGAAATATGA
*
81567475 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTAATATG
81567497 CTAAGATGGA
Statistics
Matches: 50, Mismatches: 3, Indels: 15
0.74 0.04 0.22
Matches are distributed among these distances:
30 5 0.10
31 14 0.28
33 1 0.02
34 1 0.02
35 1 0.02
36 1 0.02
38 27 0.54
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81568261 original size:16 final size:18
Alignment explanation
Indices: 81568235--81568269 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
81568225 TGAGGGGATT
81568235 AGAGAGGGGA-TTTCGGC
1 AGAGAGGGGATTTTCGGC
81568252 AGAG-GGGGATTTTCGGC
1 AGAGAGGGGATTTTCGGC
81568269 A
1 A
81568270 CTTGGGTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.23, C:0.11, G:0.46, T:0.20
Consensus pattern (18 bp):
AGAGAGGGGATTTTCGGC
Found at i:81569562 original size:20 final size:20
Alignment explanation
Indices: 81569537--81569603 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
81569527 GTTTTGATAT
81569537 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
81569557 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
81569577 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
81569597 ACATGAT
1 ACATGAT
81569604 GTATTCATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:81569564 original size:11 final size:11
Alignment explanation
Indices: 81569548--81569603 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
81569538 CATGATTGAT
81569548 ATGATATGCAC
1 ATGATATGCAC
*
81569559 ATGATATGTAC
1 ATGATATGCAC
81569570 --GATATGCAC
1 ATGATATGCAC
*
81569579 ATGATATG--T
1 ATGATATGCAC
81569588 ATGATATGCAC
1 ATGATATGCAC
81569599 ATGAT
1 ATGAT
81569604 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:81569682 original size:26 final size:26
Alignment explanation
Indices: 81569653--81569725 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
81569643 GAGGAAGTGC
*
81569653 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
81569679 AAAAGGTCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
81569705 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
81569726 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:81570005 original size:31 final size:31
Alignment explanation
Indices: 81569951--81570010 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
81569941 TACAGTAAAG
**
81569951 GCTTCGGCCCAGTAATATGAAATATGAAAAA
1 GCTTCGGCCCAGTAATACAAAATATGAAAAA
**
81569982 GCTTCGGCCCAGTGTTACAAAATATGAAA
1 GCTTCGGCCCAGTAATACAAAATATGAAA
81570011 TATGAAAAGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.23
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATACAAAATATGAAAAA
Found at i:81572907 original size:8 final size:8
Alignment explanation
Indices: 81572873--81572934 Score: 61
Period size: 8 Copynumber: 7.8 Consensus size: 8
81572863 ATGAATCGAC
81572873 AAAAGCCG
1 AAAAGCCG
* *
81572881 AAATGCTG
1 AAAAGCCG
* *
81572889 AAAAACTG
1 AAAAGCCG
*
81572897 AAAAGTCG
1 AAAAGCCG
*
81572905 AAACGCCG
1 AAAAGCCG
*
81572913 AAAAGCCA
1 AAAAGCCG
81572921 AAAAGCCG
1 AAAAGCCG
81572929 AAAAGC
1 AAAAGC
81572935 TAAAAAGCTA
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
8 42 1.00
ACGTcount: A:0.52, C:0.21, G:0.21, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:81572915 original size:16 final size:16
Alignment explanation
Indices: 81572909--81572942 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
81572899 AAGTCGAAAC
81572909 GCCGAAAAGCCAAAAA
1 GCCGAAAAGCCAAAAA
*
81572925 GCCGAAAAGCTAAAAA
1 GCCGAAAAGCCAAAAA
81572941 GC
1 GC
81572943 TAAAATGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.24, G:0.21, T:0.03
Consensus pattern (16 bp):
GCCGAAAAGCCAAAAA
Found at i:81572941 original size:24 final size:24
Alignment explanation
Indices: 81572873--81572956 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 24
81572863 ATGAATCGAC
* *
81572873 AAAAGCCGAAATGCTGAAAAA-CTG
1 AAAAGCCGAAAAGCT-AAAAAGCTA
* * ** *
81572897 AAAAGTCGAAACGCCGAAAAGCCA
1 AAAAGCCGAAAAGCTAAAAAGCTA
81572921 AAAAGCCGAAAAGCTAAAAAGCTA
1 AAAAGCCGAAAAGCTAAAAAGCTA
* *
81572945 AAATGTCGAAAA
1 AAAAGCCGAAAA
81572957 CCCGAAAGTT
Statistics
Matches: 46, Mismatches: 13, Indels: 2
0.75 0.21 0.03
Matches are distributed among these distances:
23 4 0.09
24 42 0.91
ACGTcount: A:0.54, C:0.18, G:0.19, T:0.10
Consensus pattern (24 bp):
AAAAGCCGAAAAGCTAAAAAGCTA
Found at i:81573244 original size:29 final size:29
Alignment explanation
Indices: 81573179--81573293 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 29
81573169 GCATGAGTAT
* * *
81573179 AATATGATTTGGGCCTAATGGGCCATATG
1 AATATGAATTGGGCCCAGTGGGCCATATG
** *
81573208 AAGGTGAATTGGGCCCAGTGGGCCATAAG
1 AATATGAATTGGGCCCAGTGGGCCATATG
* * *
81573237 AATATGAACTGGG-CCAGATTGGCCATTTG
1 AATATGAATTGGGCCCAG-TGGGCCATATG
* * *
81573266 AATAAG-ATTGGGCCTAGTGGGCTATATG
1 AATATGAATTGGGCCCAGTGGGCCATATG
81573294 CATGTATGTA
Statistics
Matches: 66, Mismatches: 18, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
28 17 0.26
29 49 0.74
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
AATATGAATTGGGCCCAGTGGGCCATATG
Found at i:81574358 original size:17 final size:18
Alignment explanation
Indices: 81574325--81574359 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81574315 GTTTAAGAAG
81574325 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
81574343 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
81574360 TTCAATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:81576867 original size:51 final size:51
Alignment explanation
Indices: 81576807--81576904 Score: 142
Period size: 51 Copynumber: 1.9 Consensus size: 51
81576797 TGTAACATAT
* * * * *
81576807 CCATAATGAACTCGGACCTCTCAACGAGCTCGGATGTTACATGTATCGCAC
1 CCATAATGAACTCAGACCACTCAACGAGCTCAGATGCTACATATATCGCAC
*
81576858 CCATTATGAACTCAGACCACTCAACGAGCTCAGATGCTACATATATC
1 CCATAATGAACTCAGACCACTCAACGAGCTCAGATGCTACATATATC
81576905 ACGAACTTGG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (51 bp):
CCATAATGAACTCAGACCACTCAACGAGCTCAGATGCTACATATATCGCAC
Found at i:81576924 original size:42 final size:43
Alignment explanation
Indices: 81576872--81576977 Score: 151
Period size: 43 Copynumber: 2.5 Consensus size: 43
81576862 TATGAACTCA
81576872 GACCACTCAACGAGCTCAGATGCT-ACATATATCACGAACTTG
1 GACCACTCAACGAGCTCAGATGCTCACATATATCACGAACTTG
* * ** *
81576914 GACCACTCAACAAGTTTGGATTCTCACATATATCACGAACTTG
1 GACCACTCAACGAGCTCAGATGCTCACATATATCACGAACTTG
*
81576957 GACCTCTCAACGAGCTCAGAT
1 GACCACTCAACGAGCTCAGAT
81576978 TTCTTAATTC
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
42 19 0.36
43 34 0.64
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
GACCACTCAACGAGCTCAGATGCTCACATATATCACGAACTTG
Found at i:81580045 original size:17 final size:16
Alignment explanation
Indices: 81580003--81580061 Score: 54
Period size: 15 Copynumber: 3.8 Consensus size: 16
81579993 GACAAGAAGA
*
81580003 CCAAAATAA-AAAAAT
1 CCAAGATAAGAAAAAT
*
81580018 CCAAGA-CAGAAAAAT
1 CCAAGATAAGAAAAAT
81580033 CCAAGAT--GAAGAAAT
1 CCAAGATAAGAA-AAAT
81580048 CCAAGATACAGAAA
1 CCAAGATA-AGAAA
81580062 TCTAATAGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 4 0.11
15 28 0.78
17 1 0.03
18 3 0.08
ACGTcount: A:0.61, C:0.17, G:0.12, T:0.10
Consensus pattern (16 bp):
CCAAGATAAGAAAAAT
Found at i:81580054 original size:15 final size:15
Alignment explanation
Indices: 81580014--81580063 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
81580004 CAAAATAAAA
*
81580014 AAATCCAAGACAGAA-
1 AAATCCAAGA-TGAAG
81580029 AAATCCAAGATGAAG
1 AAATCCAAGATGAAG
81580044 AAATCCAAGAT-ACAG
1 AAATCCAAGATGA-AG
81580059 AAATC
1 AAATC
81580064 TAATAGGCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 4 0.12
15 28 0.88
ACGTcount: A:0.56, C:0.18, G:0.14, T:0.12
Consensus pattern (15 bp):
AAATCCAAGATGAAG
Found at i:81590458 original size:18 final size:18
Alignment explanation
Indices: 81590435--81590470 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
81590425 ATATGAAAGA
81590435 TAAATGTGTGATAAACAT
1 TAAATGTGTGATAAACAT
81590453 TAAATGTGTGATAAACAT
1 TAAATGTGTGATAAACAT
81590471 CTTTTCCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.33
Consensus pattern (18 bp):
TAAATGTGTGATAAACAT
Found at i:81590608 original size:31 final size:31
Alignment explanation
Indices: 81590573--81590638 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
81590563 TGGGTTGCCA
81590573 TAAGAGAGAAAAATGTTTGGTTAGGCTTGGG
1 TAAGAGAGAAAAATGTTTGGTTAGGCTTGGG
*
81590604 TAAGATAGAAAAATGTTTGGTTAGGCTTGGG
1 TAAGAGAGAAAAATGTTTGGTTAGGCTTGGG
81590635 TAAG
1 TAAG
81590639 GACTAAATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.33, C:0.03, G:0.33, T:0.30
Consensus pattern (31 bp):
TAAGAGAGAAAAATGTTTGGTTAGGCTTGGG
Found at i:81593639 original size:28 final size:28
Alignment explanation
Indices: 81593570--81593670 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
81593560 GACAAGATTG
* * * *
81593570 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
81593600 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81593628 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
81593657 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
81593671 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81600544 original size:40 final size:40
Alignment explanation
Indices: 81600478--81600644 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
81600468 AAATTGAATG
* * *
81600478 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
81600517 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
81600557 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
81600597 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
81600637 ATATCCGG
1 ATATCCGG
81600645 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:81605436 original size:93 final size:93
Alignment explanation
Indices: 81605324--81605495 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81605314 GCCCATAAGT
* *
81605324 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81605389 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
81605417 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81605482 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
81605496 CAAACTATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81605491 original size:46 final size:46
Alignment explanation
Indices: 81605316--81605491 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
81605306 TGTAACCCGC
* * *
81605316 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
81605362 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
81605412 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
81605455 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81605492 TGCCCAAACT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:81607896 original size:15 final size:15
Alignment explanation
Indices: 81607874--81607948 Score: 68
Period size: 15 Copynumber: 5.2 Consensus size: 15
81607864 AAGAAACCGA
81607874 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
81607889 ATAGAG-AA-CCCA-
1 ATAAAGAAATCCAAG
81607901 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
81607915 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
81607931 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
81607946 ATA
1 ATA
81607949 CGATACTATG
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
12 5 0.11
13 6 0.13
14 4 0.09
15 31 0.66
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.16, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:81607903 original size:27 final size:27
Alignment explanation
Indices: 81607868--81607948 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 27
81607858 GATAACAAGA
* *
81607868 AACCGAATAAAGAAATCCAAGATAGAG
1 AACCCAATAAAGAAATCCAAGATAAAG
81607895 AACCCAATAAAGAAATCC-AGAATAAAG
1 AACCCAATAAAGAAATCCAAG-ATAAAG
* *
81607922 AGATCCAGGATAAAGAAACCCAAGATA
1 A-ACCCA--ATAAAGAAATCCAAGATA
81607949 CGATACTATG
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
26 2 0.04
27 23 0.51
28 4 0.09
30 14 0.31
31 2 0.04
ACGTcount: A:0.56, C:0.17, G:0.16, T:0.11
Consensus pattern (27 bp):
AACCCAATAAAGAAATCCAAGATAAAG
Found at i:81607921 original size:42 final size:41
Alignment explanation
Indices: 81607864--81607944 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 41
81607854 CAAAGATAAC
*
81607864 AAGAAACCGAATAAAGAAATCCAAGATAGAG-AACCCAATA
1 AAGAAACCGAATAAAGAAATCCAAGATAAAGAAACCCAATA
* *
81607904 AAGAAATCCAGAATAAAGAGATCCAGGATAAAGAAACCCAA
1 AAGAAA-CC-GAATAAAGAAATCCAAGATAAAGAAACCCAA
81607945 GATACGATAC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
40 6 0.17
41 2 0.06
42 20 0.57
43 7 0.20
ACGTcount: A:0.57, C:0.17, G:0.16, T:0.10
Consensus pattern (41 bp):
AAGAAACCGAATAAAGAAATCCAAGATAAAGAAACCCAATA
Found at i:81610955 original size:93 final size:93
Alignment explanation
Indices: 81610843--81611013 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
81610833 GCCCATAAGT
* *
81610843 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81610908 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
81610936 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81611001 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81611014 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81611010 original size:46 final size:46
Alignment explanation
Indices: 81610835--81611010 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
81610825 TGTAACCCGC
* * *
81610835 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81610881 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
81610931 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
81610974 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81611011 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81613418 original size:30 final size:30
Alignment explanation
Indices: 81613374--81613462 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
81613364 CAAAGATAAC
81613374 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
81613403 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
81613433 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
81613463 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:81613422 original size:15 final size:15
Alignment explanation
Indices: 81613374--81613453 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
81613364 CAAAGATAAC
*
81613374 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
81613388 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
81613403 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
81613418 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
81613433 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
81613448 AAGAAA
1 AAGAAA
81613454 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:81613462 original size:15 final size:15
Alignment explanation
Indices: 81613385--81613462 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
81613375 AGAAAACCGA
81613385 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
81613400 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
81613414 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
81613429 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
81613445 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
81613460 ATA
1 ATA
81613463 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:81616485 original size:93 final size:93
Alignment explanation
Indices: 81616373--81616543 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
81616363 GCCCATAAGT
* *
81616373 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81616438 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
81616466 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81616531 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81616544 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81616540 original size:46 final size:46
Alignment explanation
Indices: 81616365--81616540 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
81616355 TGTAACCCGC
* * *
81616365 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81616411 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
81616461 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
81616504 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81616541 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81619189 original size:14 final size:16
Alignment explanation
Indices: 81619157--81619195 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
81619147 ATTTACATAA
*
81619157 CATATATCACATATTT
1 CATATATCACATATAT
81619173 CATATATCAC-T-TAT
1 CATATATCACATATAT
81619187 CATATATCA
1 CATATATCA
81619196 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (16 bp):
CATATATCACATATAT
Found at i:81620897 original size:46 final size:44
Alignment explanation
Indices: 81620847--81621016 Score: 186
Period size: 43 Copynumber: 3.8 Consensus size: 44
81620837 TGGTTGAGCA
81620847 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AAA-G
* *
81620893 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AA--A-G
*
81620938 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATG-AAG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAG
* * *
81620983 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81621017 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
43 36 0.34
45 5 0.05
46 30 0.28
47 29 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAG
Found at i:81621277 original size:19 final size:20
Alignment explanation
Indices: 81621240--81621277 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81621230 ATAAGGTGGT
81621240 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
81621260 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
81621278 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:81639450 original size:40 final size:40
Alignment explanation
Indices: 81639405--81639591 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
81639395 ATAACCACAA
* *
81639405 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
81639445 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
*
81639485 GCACAAATGCCTTCGGGTCTTAACCCAGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
*
81639525 GCACAAATGCCTTCGGGTCTTAACCCGGATATA--ATACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCA-ACTC
* * *
81639564 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
81639592 GTATCATTCA
Statistics
Matches: 134, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 28 0.21
40 105 0.78
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:81639508 original size:80 final size:80
Alignment explanation
Indices: 81639385--81639595 Score: 309
Period size: 80 Copynumber: 2.7 Consensus size: 80
81639375 TCTTCGGAAT
* * *
81639385 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
81639449 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * *
81639464 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCAGATATAGCAACTCGCAC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
81639529 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * * *
81639544 TTAACCCGGATATAA-TACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
81639596 CATTCAATTG
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
79 34 0.29
80 83 0.71
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:81646757 original size:61 final size:58
Alignment explanation
Indices: 81646692--81646807 Score: 169
Period size: 61 Copynumber: 1.9 Consensus size: 58
81646682 AGTGATTATC
* *
81646692 TTAATATTAAATTAAATTTAATATTTATCTTATAGATAATTATTATATTAATTTAATAGAT
1 TTAATATTAAATTAAATCTAATATTTATC-T-T-GATAAGTATTATATTAATTTAATAGAT
* *
81646753 TTAATATTAAATTTAATCTATTATTTATCTTGATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTAAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATA
81646808 TGAAAGTGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 23 0.45
59 1 0.02
60 1 0.02
61 26 0.51
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (58 bp):
TTAATATTAAATTAAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATAGAT
Found at i:81649164 original size:43 final size:43
Alignment explanation
Indices: 81649117--81649199 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
81649107 AAAGTAAATA
81649117 TAAAAATATTAGGATAAGGAGATAAATTTGTAATTTTTTTCCT
1 TAAAAATATTAGGATAAGGAGATAAATTTGTAATTTTTTTCCT
81649160 TAAAAATATTAGGATAAGGAGATAAATTTGTAATTTTTTT
1 TAAAAATATTAGGATAAGGAGATAAATTTGTAATTTTTTT
81649200 TTTCTTCGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.42
Consensus pattern (43 bp):
TAAAAATATTAGGATAAGGAGATAAATTTGTAATTTTTTTCCT
Found at i:81650769 original size:24 final size:24
Alignment explanation
Indices: 81650741--81650786 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
81650731 TTAGGGTTAG
81650741 GGTTTAGTGGTTTAAG-ATTTTTAA
1 GGTTTAG-GGTTTAAGTATTTTTAA
*
81650765 GGTTTAGGGTTTTAGTATTTTT
1 GGTTTAGGGTTTAAGTATTTTT
81650787 TAAGAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (24 bp):
GGTTTAGGGTTTAAGTATTTTTAA
Found at i:81651088 original size:125 final size:127
Alignment explanation
Indices: 81650906--81651215 Score: 446
Period size: 127 Copynumber: 2.4 Consensus size: 127
81650896 ATTAATTATT
* *
81650906 AATTATGGGAAAAAGCTCCCACGTGGATGCTCTTTTTGCTACAGTAGTATCT-AAAAAAA-AA-T
1 AATTACGGAAAAAAGCTCCCACGTGGATGCTC-TTTTGCTACAGTAGTATCTGAAAAAAATAATT
* *
81650968 TGGAGAAGATGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGAAGGATGCACTGTCAACTA
65 TGGAGAAGATGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGAAGGATGCACTGCCAACAA
* * * *
81651031 AATTACGGAAAAAAGCTCCCACGTGAATGCTCTTTTGCCATAGTAGTATTTGAAAAAAATAATTT
1 AATTACGGAAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGAAAAAAATAATTT
* * * * *
81651096 TGAGAAGATGTTTCTGAGCAAATAGTGTCAAAAACGTTTCAAGAAGGATGCACTGCCAGCAA
66 GGAGAAGATGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGAAGGATGCACTGCCAACAA
* *
81651158 AATTACGGAAAAAAAGCTCCTACATGGATGCTCTTTTGCTACAGTAGTATCTGAAAAA
1 AATTACGG-AAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGAAAAA
81651216 GCCTTAGACT
Statistics
Matches: 162, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
124 16 0.10
125 36 0.22
126 2 0.01
127 65 0.40
128 43 0.27
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (127 bp):
AATTACGGAAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGAAAAAAATAATTT
GGAGAAGATGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGAAGGATGCACTGCCAACAA
Found at i:81656011 original size:38 final size:39
Alignment explanation
Indices: 81655915--81656039 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
81655905 TTCAGTGATG
81655915 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
81655954 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
81655993 TATAT-CGGACTTAAGGTCCTCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
81656031 TATGTCCGG
1 TATATCCGG
81656040 GCTAAAGTCC
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 33 0.41
39 47 0.59
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:81656066 original size:39 final size:39
Alignment explanation
Indices: 81656013--81656097 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 39
81656003 TTAAGGTCCT
* * *
81656013 CAGGCTACGTGCTGGAAATATGTCCGGG-CTAAAGTCCCG
1 CAGGCTTCGAGCTGGAAATAT-ACCGGGTCTAAAGTCCCG
* * * *
81656052 CAGGCTTCGAGCTGGTATTATACCGGGTTTAAATTCCCG
1 CAGGCTTCGAGCTGGAAATATACCGGGTCTAAAGTCCCG
81656091 CAGGCTT
1 CAGGCTT
81656098 GTGTGGTAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
38 5 0.13
39 33 0.87
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (39 bp):
CAGGCTTCGAGCTGGAAATATACCGGGTCTAAAGTCCCG
Found at i:81656066 original size:77 final size:78
Alignment explanation
Indices: 81655915--81656077 Score: 190
Period size: 77 Copynumber: 2.1 Consensus size: 78
81655905 TTCAGTGATG
* * * **
81655915 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
*
81655980 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * *
81655993 TATAT-CGGACTTAAGGTCCTCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
*
81656056 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
81656070 TATA-CCGG
1 TATATCCGG
81656078 GTTTAAATTC
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
76 5 0.07
77 62 0.86
78 5 0.07
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGAGCTGGAAT
Found at i:81662961 original size:39 final size:39
Alignment explanation
Indices: 81662907--81663032 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
81662897 TTCAGTGATG
*
81662907 TATATCCAGACTTAGGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
*
81662946 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
* * * * *
81662985 TATATCTGGACTTAAGGTCCTCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
*
81663024 TATGTCCGG
1 TATATCCGG
81663033 GCTAAAGTCC
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
Found at i:81662998 original size:78 final size:78
Alignment explanation
Indices: 81662915--81663066 Score: 191
Period size: 78 Copynumber: 1.9 Consensus size: 78
81662905 TGTATATCCA
* * * ** *
81662915 GACTTAGGGTCCACAGGCTATGTGCTGGAATTATATCCGGACTTAGGGT-CCGCAGGCTAT-GTG
1 GACTTAAGGTCCACAGGCTACGTGCTGGAAATATATCCGGAC-TAAAGTCCCGCAGGCT-TCGAG
81662978 CTGGAATTATATCTG
64 CTGGAATTATATCTG
* * *
81662993 GACTTAAGGTCCTCAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTCCCGCAGGCTTCGAGCT
1 GACTTAAGGTCCACAGGCTACGTGCTGGAAATATATCCGGACTAAAGTCCCGCAGGCTTCGAGCT
81663058 GGAATTATA
66 GGAATTATA
81663067 CCGGGTTTAA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
77 5 0.08
78 58 0.92
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (78 bp):
GACTTAAGGTCCACAGGCTACGTGCTGGAAATATATCCGGACTAAAGTCCCGCAGGCTTCGAGCT
GGAATTATATCTG
Found at i:81663049 original size:39 final size:39
Alignment explanation
Indices: 81662907--81663089 Score: 163
Period size: 39 Copynumber: 4.7 Consensus size: 39
81662897 TTCAGTGATG
* ** * *
81662907 TATATCCAGACTTAGGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAT
** *
81662946 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAT
* * * *
81662985 TATATCTGGACTTAAGGTCCTCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAT
* * * *
81663024 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGAAT
1 TATATCCGGACTTAAAGT-CCGCAGGCTACGTGCTGGAAT
** *
81663063 TATA-CCGGGTTTAAATTCCCGCAGGCT
1 TATATCCGGACTTAAAGT-CCGCAGGCT
81663090 TGTGTTGGTA
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
38 10 0.08
39 114 0.92
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAT
Found at i:81665155 original size:127 final size:127
Alignment explanation
Indices: 81664939--81665291 Score: 533
Period size: 127 Copynumber: 2.8 Consensus size: 127
81664929 ATAAAATTTT
* * *
81664939 TTGGCTAATTTAAAAGAACATTTATTGTATTAAAATT--AAAA--AAA-TACAATTAATATATTA
1 TTGGCTAATTTAAAAGAA-ATTTATTTTAATAAAATTAAAAAAGTAAAGTACAATTAAAATATTA
* * *
81664999 AAAACAACTTTTATTTTATTAATTAAAACTATATAAGAA-TAAATATAAAAATAATAAAAATA
65 AAAACAACTTTTATTTTATTAATTGAAACTATATAAAAATTAAATATAAAAATAATAAAAAAA
*
81665061 TTGGCTAATTTAAAAGAATATTTATTTTAATAAAATTAAAAAAGTAAAGTACAATTAAAATGTTA
1 TTGGCTAATTTAAAAGAA-ATTTATTTTAATAAAATTAAAAAAGTAAAGTACAATTAAAATATTA
*
81665126 AAAATAACTTTTATTTTATTAATTGAAACTATATAAAAATTAAATATAAAAATAATAAAAAAA
65 AAAACAACTTTTATTTTATTAATTGAAACTATATAAAAATTAAATATAAAAATAATAAAAAAA
*
81665189 TTGCCTAATTTAAAA-AAATTTATTTTAATAAAATTTAAAAAAGTAAAGTACAATTAAAATATTA
1 TTGGCTAATTTAAAAGAAATTTATTTTAATAAAA-TTAAAAAAGTAAAGTACAATTAAAATATTA
81665253 AAAACAACTTTTATTTTATT-ATATGAAACTATATAAAAA
65 AAAACAACTTTTATTTTATTAAT-TGAAACTATATAAAAA
81665292 AAGTTTCTAC
Statistics
Matches: 211, Mismatches: 12, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
122 34 0.16
124 4 0.02
126 21 0.10
127 116 0.55
128 36 0.17
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.37
Consensus pattern (127 bp):
TTGGCTAATTTAAAAGAAATTTATTTTAATAAAATTAAAAAAGTAAAGTACAATTAAAATATTAA
AAACAACTTTTATTTTATTAATTGAAACTATATAAAAATTAAATATAAAAATAATAAAAAAA
Found at i:81666370 original size:7 final size:7
Alignment explanation
Indices: 81666358--81666389 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
81666348 TTATATAGGT
81666358 AATACTA
1 AATACTA
81666365 AATACTA
1 AATACTA
81666372 AATACTA
1 AATACTA
*
81666379 AATAGTA
1 AATACTA
81666386 AATA
1 AATA
81666390 TGAAACGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.59, C:0.09, G:0.03, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:81667575 original size:21 final size:22
Alignment explanation
Indices: 81667535--81667576 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
81667525 GGTTTTTTGC
**
81667535 AAAAATTAGAGAGAGCTTTGAT
1 AAAAATTAGAGAGAAATTTGAT
81667557 AAAAATT-GAGAGAAATTTGA
1 AAAAATTAGAGAGAAATTTGA
81667577 GAGAATTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.50, C:0.02, G:0.21, T:0.26
Consensus pattern (22 bp):
AAAAATTAGAGAGAAATTTGAT
Found at i:81667622 original size:14 final size:11
Alignment explanation
Indices: 81667563--81667612 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 11
81667553 TGATAAAAAT
81667563 TGAGAGAAATT-
1 TGAGAG-AATTG
81667574 TGAGAGAATT-
1 TGAGAGAATTG
81667584 TGGAGAGAATTG
1 T-GAGAGAATTG
81667596 TGAGAGAATTG
1 TGAGAGAATTG
81667607 TGAGAG
1 TGAGAG
81667613 GACTATTGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
10 5 0.14
11 31 0.84
12 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.36, T:0.26
Consensus pattern (11 bp):
TGAGAGAATTG
Found at i:81668001 original size:27 final size:27
Alignment explanation
Indices: 81667971--81668027 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
81667961 AAGTAGAAAT
*
81667971 ATTTGAAATTATTCATTATATAACTAA
1 ATTTGAAATTATTCATTATATAAATAA
81667998 ATTTGAAATTATTCATTATATAAATAA
1 ATTTGAAATTATTCATTATATAAATAA
81668025 ATT
1 ATT
81668028 GTCATTAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (27 bp):
ATTTGAAATTATTCATTATATAAATAA
Found at i:81673014 original size:44 final size:43
Alignment explanation
Indices: 81672942--81673104 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 43
81672932 CGTTAACATT
* ** *
81672942 GATCTGAGATATCGTGTAAGACTGTGTCTGGGACACAGGCCTC
1 GATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATC
* *
81672985 GATTTGAGATTTACGTGTAAGACCATGTCTGGGACATAGGCATC
1 GATCTGAGATTT-CGTGTAAGACCATGTCTGGGACACAGGCATC
* * *
81673029 GTATCT--GATTTCGTGTAAGACCCTATCTGGGACAGAGGCATC
1 G-ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATC
* * * *
81673071 GATACTGA-ATTGCATGTAAGACCACGTCCGGGAC
1 GAT-CTGAGATTTCGTGTAAGACCATGTCTGGGAC
81673105 GTCGGCATTG
Statistics
Matches: 99, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 31 0.31
43 35 0.35
44 28 0.28
45 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (43 bp):
GATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATC
Found at i:81673058 original size:42 final size:42
Alignment explanation
Indices: 81672992--81673094 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 42
81672982 CTCGATTTGA
* *
81672992 GATTTACGTGTAAGACCATGTCTGGGACATAGGCATCG-TATCT
1 GATTT-CGTGTAAGACCATATCTGGGACAGAGGCATCGATA-CT
*
81673035 GATTTCGTGTAAGACCCTATCTGGGACAGAGGCATCGATACT
1 GATTTCGTGTAAGACCATATCTGGGACAGAGGCATCGATACT
* *
81673077 GAATTGCATGTAAGACCA
1 G-ATTTCGTGTAAGACCA
81673095 CGTCCGGGAC
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 32 0.62
43 20 0.38
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATATCTGGGACAGAGGCATCGATACT
Found at i:81680373 original size:44 final size:43
Alignment explanation
Indices: 81680307--81680469 Score: 179
Period size: 43 Copynumber: 3.8 Consensus size: 43
81680297 CGTTGACATT
* *
81680307 GATCTGAGATATCGTGTAAGACCATGTCTGGGACACAGGCCTC
1 GATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATC
* *
81680350 GATTTGAGATTTACGTGTAAGACCATGTCTGGGACATAGGCATC
1 GATCTGAGATTT-CGTGTAAGACCATGTCTGGGACACAGGCATC
* * *
81680394 GTATCT--GATTTCGTGTAAGACCCTATCTGGGACAGAGGCATC
1 G-ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATC
* * * *
81680436 GATACTGA-ATTGCATGTAAGACCACGTCCGGGAC
1 GAT-CTGAGATTTCGTGTAAGACCATGTCTGGGAC
81680470 GTCGGCATTG
Statistics
Matches: 101, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
41 2 0.02
42 31 0.31
43 35 0.35
44 30 0.30
45 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (43 bp):
GATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATC
Found at i:81680423 original size:42 final size:41
Alignment explanation
Indices: 81680318--81680469 Score: 160
Period size: 42 Copynumber: 3.6 Consensus size: 41
81680308 ATCTGAGATA
* *
81680318 TCGTGTAAGACCATGTCTGGGACACAGGCCTCGATTTGAGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATCT--GATT
*
81680361 TACGTGTAAGACCATGTCTGGGACATAGGCATCGTATCTGATT
1 T-CGTGTAAGACCATGTCTGGGACACAGGCATCG-ATCTGATT
* * *
81680404 TCGTGTAAGACCCTATCTGGGACAGAGGCATCGATACTGAATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGAT-CTG-ATT
* * * *
81680447 GCATGTAAGACCACGTCCGGGAC
1 TCGTGTAAGACCATGTCTGGGAC
81680470 GTCGGCATTG
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 2 0.02
42 32 0.34
43 26 0.28
44 30 0.32
45 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATCTGATT
Found at i:81684846 original size:26 final size:26
Alignment explanation
Indices: 81684817--81684872 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
81684807 TGATAAAAAT
81684817 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81684843 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81684869 TGAT
1 TGAT
81684873 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81686388 original size:26 final size:26
Alignment explanation
Indices: 81686359--81686411 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
81686349 TTTACAGCTT
81686359 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
81686385 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
81686411 T
1 T
81686412 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:81691322 original size:27 final size:27
Alignment explanation
Indices: 81691291--81691351 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
81691281 TGGGCTTAAT
81691291 GGGCCAAAATCAGAATGATGGGCCAAC
1 GGGCCAAAATCAGAATGATGGGCCAAC
**
81691318 GGGCCAAAATTGGAATGATGGGCCAAC
1 GGGCCAAAATCAGAATGATGGGCCAAC
*
81691345 AGGCCAA
1 GGGCCAA
81691352 TTCGGTAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.36, C:0.21, G:0.31, T:0.11
Consensus pattern (27 bp):
GGGCCAAAATCAGAATGATGGGCCAAC
Found at i:81691498 original size:26 final size:26
Alignment explanation
Indices: 81691469--81691521 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
81691459 TTTACAGTTT
81691469 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
81691495 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
81691521 T
1 T
81691522 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:81694268 original size:47 final size:48
Alignment explanation
Indices: 81694160--81694474 Score: 528
Period size: 48 Copynumber: 6.6 Consensus size: 48
81694150 TACAAGATAA
* *
81694160 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
81694208 ATATGTATATGTGGTAAAGCCGAATGGCTAATG-CAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
81694255 ATATGTATGTGTGGTAAAG-CGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
81694302 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
81694350 ATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
81694398 ATATGTATAGGTGGT-AAGCCGAATGGCTAATGCGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
81694445 ATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
81694475 GTAATTCGGC
Statistics
Matches: 252, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
46 13 0.05
47 106 0.42
48 133 0.53
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:81694476 original size:95 final size:96
Alignment explanation
Indices: 81694160--81694474 Score: 537
Period size: 95 Copynumber: 3.3 Consensus size: 96
81694150 TACAAGATAA
* *
81694160 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
81694225 AGCCGAATGGCTAATGC-AAATATGTATGAG
66 AGCCGAATGGCTAATGCGAAATATGTATGAG
*
81694255 ATATGTATGTGTGGTAAAG-CGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
81694319 AGCCGAATGGCTAGTGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGCGAAATATGTATGAG
* * *
81694350 ATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAGGTGGT-A
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
81694414 AGCCGAATGGCTAATGCGAAATATGTATGAG
66 AGCCGAATGGCTAATGCGAAATATGTATGAG
81694445 ATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
81694475 GTAATTCGGC
Statistics
Matches: 208, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
94 60 0.29
95 107 0.51
96 41 0.20
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGCGAAATATGTATGAG
Found at i:81696040 original size:40 final size:40
Alignment explanation
Indices: 81695986--81696261 Score: 353
Period size: 40 Copynumber: 7.0 Consensus size: 40
81695976 ATTGAGAGTT
*
81695986 ATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * * *
81696026 TTATGTCTGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
81696066 TTTATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGCTG
1 -ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * * *
81696107 TTATGTCTGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
81696146 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
81696186 ATATATCCGGGCTAAGTCCC-AAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
81696225 ATATATCCGGGCTAA-ACCTCGAAG-GCATTCATGCTGG
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
81696262 AATTATGAGG
Statistics
Matches: 213, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.01
39 79 0.37
40 95 0.45
41 37 0.17
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
Found at i:81696198 original size:79 final size:78
Alignment explanation
Indices: 81695986--81696260 Score: 374
Period size: 79 Copynumber: 3.5 Consensus size: 78
81695976 ATTGAGAGTT
*
81695986 ATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCTGGGCTAAGTCCCAAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GTGTTATGTCTGGGCTAAGT-CCAAAGA
*
81696051 GCATTCGTGCTGGTG
64 GCATTCGTGCTAGTG
* * *
81696066 TTTATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGCTGTTATGTCTGGGCTAAGTCCGAAGA
1 -ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG-TGTTATGTCTGGGCTAAGTCCAAAGA
81696131 GCATTCGTGCTAGTG
64 GCATTCGTGCTAGTG
* * * * *
81696146 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCAAGAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GTGTTATGTCTGGGCTAAGTCCAAAGAG
81696211 CATTCGTGCTAGTG
65 CATTCGTGCTAGTG
* *
81696225 ATATATCCGGGCTAA-ACCTCGAAG-GCATTCATGCTG
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTG
81696261 GAATTATGAG
Statistics
Matches: 176, Mismatches: 15, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 89 0.51
80 22 0.12
81 52 0.30
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (78 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGTGTTATGTCTGGGCTAAGTCCAAAGAGC
ATTCGTGCTAGTG
Found at i:81696339 original size:29 final size:29
Alignment explanation
Indices: 81696306--81696399 Score: 102
Period size: 29 Copynumber: 3.3 Consensus size: 29
81696296 CGAGTGCTAA
81696306 GTGTGCGAGATT-GGTAATTGAGGCACTAT
1 GTGTGCGAG-TTCGGTAATTGAGGCACTAT
**
81696335 GTGTGCGAGTTCTTTAATTGAGGCACTAT
1 GTGTGCGAGTTCGGTAATTGAGGCACTAT
* ** * *
81696364 GTGTACGAGTTCTATAATCGA-GCGCTAT
1 GTGTGCGAGTTCGGTAATTGAGGCACTAT
81696392 GTGTGCGA
1 GTGTGCGA
81696400 AATCAGTCAG
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
28 15 0.26
29 42 0.74
ACGTcount: A:0.22, C:0.14, G:0.31, T:0.33
Consensus pattern (29 bp):
GTGTGCGAGTTCGGTAATTGAGGCACTAT
Found at i:81699995 original size:48 final size:48
Alignment explanation
Indices: 81699940--81700194 Score: 459
Period size: 46 Copynumber: 5.4 Consensus size: 48
81699930 ATGTAGTGTG
81699940 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
81699988 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG--TA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
81700034 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
81700082 TGTGGTAAAGCCGAAT-GCT-ATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
81700128 -GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATAT-TA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
81700174 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
81700195 GTGATATCGG
Statistics
Matches: 201, Mismatches: 1, Indels: 11
0.94 0.00 0.05
Matches are distributed among these distances:
45 15 0.07
46 78 0.39
47 46 0.23
48 62 0.31
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:81700051 original size:94 final size:94
Alignment explanation
Indices: 81699940--81700194 Score: 471
Period size: 94 Copynumber: 2.7 Consensus size: 94
81699930 ATGTAGTGTG
81699940 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
81700005 GCTAATGTGAAATATGTATGAGATATGTA
66 GCTAATGTGAAATATGTATGAGATATGTA
81700034 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT-
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
81700098 GCT-ATGTGAAATATGTATGAGATATGTA
66 GCTAATGTGAAATATGTATGAGATATGTA
*
81700126 TAGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATAT-TATGTGGTAAAGCCGAAT
1 T-GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
81700190 GGCTA
65 GGCTA
81700195 GTGATATCGG
Statistics
Matches: 157, Mismatches: 1, Indels: 6
0.96 0.01 0.04
Matches are distributed among these distances:
92 44 0.28
93 49 0.31
94 64 0.41
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (94 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
GCTAATGTGAAATATGTATGAGATATGTA
Found at i:81702474 original size:29 final size:29
Alignment explanation
Indices: 81702446--81702548 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
81702436 CCTCCGAGCT
** * * *
81702446 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
81702475 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81702504 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81702533 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81702549 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81710424 original size:29 final size:29
Alignment explanation
Indices: 81710396--81710497 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
81710386 CCTCCGAGCT
** * * *
81710396 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
81710425 TGCACACTTAGTG-CATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81710453 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81710482 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81710498 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 24 0.37
29 41 0.63
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81713191 original size:26 final size:26
Alignment explanation
Indices: 81713160--81713211 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
81713150 AAATGATCAA
81713160 GAGATGCAAGGCAGAAAATGAGGTAC
1 GAGATGCAAGGCAGAAAATGAGGTAC
***
81713186 GAGATGCGTTGCAGAAAATGAGGTAC
1 GAGATGCAAGGCAGAAAATGAGGTAC
81713212 ATAAGATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.35, T:0.15
Consensus pattern (26 bp):
GAGATGCAAGGCAGAAAATGAGGTAC
Found at i:81714945 original size:24 final size:24
Alignment explanation
Indices: 81714918--81714963 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
81714908 TTTCTCCTAA
*
81714918 ATTTT-AATTTTATTTAATTATTTG
1 ATTTTCAA-TTTATTGAATTATTTG
81714942 ATTTTCAATTTATTGAATTATT
1 ATTTTCAATTTATTGAATTATT
81714964 AATGCAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (24 bp):
ATTTTCAATTTATTGAATTATTTG
Found at i:81715496 original size:43 final size:43
Alignment explanation
Indices: 81715448--81715538 Score: 182
Period size: 43 Copynumber: 2.1 Consensus size: 43
81715438 CTCGAGGAAT
81715448 TTACAATTCTAGGTTCTAAGTGGAATGTGTCAAAGCATAGAAC
1 TTACAATTCTAGGTTCTAAGTGGAATGTGTCAAAGCATAGAAC
81715491 TTACAATTCTAGGTTCTAAGTGGAATGTGTCAAAGCATAGAAC
1 TTACAATTCTAGGTTCTAAGTGGAATGTGTCAAAGCATAGAAC
81715534 TTACA
1 TTACA
81715539 CTTGTCGCAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (43 bp):
TTACAATTCTAGGTTCTAAGTGGAATGTGTCAAAGCATAGAAC
Found at i:81721245 original size:18 final size:20
Alignment explanation
Indices: 81721213--81721250 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
81721203 GTAAGTTATG
81721213 ATGTTATGTTCATATGTGAT
1 ATGTTATGTTCATATGTGAT
81721233 ATGTTATG-T-ATATGTGAT
1 ATGTTATGTTCATATGTGAT
81721251 CAAATGATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.50
19 1 0.06
20 8 0.44
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.50
Consensus pattern (20 bp):
ATGTTATGTTCATATGTGAT
Found at i:81723066 original size:40 final size:40
Alignment explanation
Indices: 81722992--81723141 Score: 214
Period size: 40 Copynumber: 3.8 Consensus size: 40
81722982 AACCCAAGTA
* *
81722992 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
81723031 CCTTCGGGTCTTAGCTCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
81723071 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
81723111 CCTTCGGGACTTAGCCCGGATATAGTCAATA
1 CCTTCGGGACTTAGCCCGGATATAGTCAATA
81723142 TCACCGTTTA
Statistics
Matches: 97, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 12 0.12
40 82 0.85
41 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:81730963 original size:40 final size:40
Alignment explanation
Indices: 81730888--81731108 Score: 351
Period size: 40 Copynumber: 5.6 Consensus size: 40
81730878 AACCCAAGTA
* *
81730888 CCTTCGGGATTTAG-CCGGATATAG-CGACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-AAT-AGCACAAATG
* *
81730927 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
81730967 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
81731007 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
81731047 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
81731087 CCTTC-GGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
81731109 CATTCGAATA
Statistics
Matches: 171, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
39 30 0.18
40 140 0.82
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:81737525 original size:9 final size:9
Alignment explanation
Indices: 81737511--81737542 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
81737501 TTCTTATATT
81737511 TTTTTTTAC
1 TTTTTTTAC
81737520 TTTTTTTA-
1 TTTTTTTAC
81737528 -TTTTTTAC
1 TTTTTTTAC
81737536 TTTTTTT
1 TTTTTTT
81737543 TTATATTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.33
9 14 0.67
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTAC
Done.