Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 264 of 433
Found at i:82060168 original size:30 final size:27
Alignment explanation
Indices: 82060105--82060175 Score: 88
Period size: 30 Copynumber: 2.5 Consensus size: 27
82060095 GTATTCAACT
* *
82060105 CGCACACTTAGTGCTTATAATCAAACT
1 CGCACACTTAGTGCTTACAATCAAACC
*
82060132 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCT-TACAA--TCAAACC
82060162 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82060176 CAATCTTGTC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.39
28 4 0.11
30 19 0.50
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTTACAATCAAACC
Found at i:82064341 original size:29 final size:29
Alignment explanation
Indices: 82064279--82064381 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
82064269 GTGACGAGAT
* * *
82064279 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
82064308 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
82064337 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
82064366 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82064382 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:82070196 original size:41 final size:41
Alignment explanation
Indices: 82070151--82070268 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
82070141 TGAAAGATAA
82070151 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
82070192 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82070222 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82070263 ATGTAG
1 ATGTAG
82070269 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:82070207 original size:71 final size:71
Alignment explanation
Indices: 82070119--82070282 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82070109 GAGATGTATC
82070119 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82070184 AGGACA
66 AGGACA
82070190 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82070255 AGGACA
66 AGGACA
82070261 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82070283 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82077733 original size:41 final size:41
Alignment explanation
Indices: 82077688--82077805 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
82077678 TGAAAGATAA
82077688 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
82077729 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82077759 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82077800 ATGTAG
1 ATGTAG
82077806 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:82077744 original size:71 final size:71
Alignment explanation
Indices: 82077656--82077819 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82077646 GAGATGTATC
82077656 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82077721 AGGACA
66 AGGACA
82077727 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82077792 AGGACA
66 AGGACA
82077798 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82077820 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82085103 original size:28 final size:28
Alignment explanation
Indices: 82085042--82085139 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
82085032 TCACAAATTG
** * *
82085042 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
82085071 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
82085099 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
82085127 GCACTAAGTGTGC
1 GCACTAAGTGTGC
82085140 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:82092784 original size:28 final size:28
Alignment explanation
Indices: 82092723--82092820 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
82092713 TCACAAATTG
** * *
82092723 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
82092752 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
82092780 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
82092808 GCACTAAGTGTGC
1 GCACTAAGTGTGC
82092821 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:82097186 original size:40 final size:39
Alignment explanation
Indices: 82097021--82097204 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
82097011 AAATTGAATG
* * *
82097021 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
82097061 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
82097101 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
82097141 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
82097180 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
82097205 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:82097229 original size:80 final size:81
Alignment explanation
Indices: 82097061--82097249 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
82097051 GCTGGAAATT
* * * *
82097061 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
82097126 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
82097142 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
82097205 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
82097221 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
82097250 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:82105301 original size:40 final size:39
Alignment explanation
Indices: 82105136--82105319 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
82105126 AAATTGAATG
* * *
82105136 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
82105176 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
82105216 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
82105256 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
82105295 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
82105320 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:82105344 original size:80 final size:81
Alignment explanation
Indices: 82105176--82105364 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
82105166 GCTGGAAATT
* * * *
82105176 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
82105241 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
82105257 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
82105320 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
82105336 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
82105365 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:82108518 original size:79 final size:79
Alignment explanation
Indices: 82108382--82108563 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 79
82108372 TCGAATGATG
*
82108382 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
* *
82108446 TGTGCGAGTTACTAAA
66 TATGCGAGCTA-T-AA
* * **
82108462 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
82108524 TTATGCGAGCTATAA
65 TTATGCGAGCTATAA
*
82108539 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82108564 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
76 9 0.10
77 16 0.18
78 2 0.02
79 46 0.51
80 18 0.20
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TATGCGAGCTATAA
Found at i:82108552 original size:37 final size:40
Alignment explanation
Indices: 82108382--82108563 Score: 232
Period size: 40 Copynumber: 4.7 Consensus size: 40
82108372 TCGAATGATG
* * *
82108382 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
82108422 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
82108462 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
82108501 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGCTA-T-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82108539 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82108564 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
37 22 0.17
38 2 0.02
39 38 0.30
40 57 0.45
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82116568 original size:40 final size:40
Alignment explanation
Indices: 82116471--82116651 Score: 188
Period size: 40 Copynumber: 4.5 Consensus size: 40
82116461 TCAAATGATG
* * * * *
82116471 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAA
** *
82116511 TCCGGACTAGGAT-CCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTATGCGAGTTACTAAA
*
82116551 TCTGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
** *
82116591 TCCGGGTTAAGTCCCGAAGGTGTTTATGCGAGTTGCTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTA-AA
* *
82116632 -CCGGGCTATGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
82116652 GTTTGAACGA
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 110 0.92
41 9 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
Found at i:82116663 original size:80 final size:79
Alignment explanation
Indices: 82116524--82116688 Score: 174
Period size: 80 Copynumber: 2.1 Consensus size: 79
82116514 GGACTAGGAT
* * *
82116524 CCGAAGGCATTTATGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTATGCGAGTTA-CT
1 CCGAAGGCATTTATGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTATACGAG-TAGCT
*
82116588 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
** * * *
82116604 CCGAAGGTGTTTATGCGAGTTGCTATAA-CCGGGCTATGTCCCGAAGGCGTTTGA-ACGAGTAGC
1 CCGAAGGCATTTATGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTT-ATACGAGTAGC
* *
82116667 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
82116683 CCGAAG
1 CCGAAG
82116689 TTACGTGATT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
79 15 0.21
80 53 0.75
81 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTATGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTATACGAGTAGCTA
AATCCGGTTAAATC
Found at i:82116669 original size:40 final size:40
Alignment explanation
Indices: 82116472--82116675 Score: 118
Period size: 40 Copynumber: 5.1 Consensus size: 40
82116462 CAAATGATGT
* * * *
82116472 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCGTTTATAC-GAGTAG-CTATAA
* * * *
82116512 CCGGACTAGGAT-CCGAAGGCATTTATGCGAGTTA-CTA-AA
1 CCGGGCTAAG-TCCCGAAGGCGTTTATACGAG-TAGCTATAA
* * * *
82116551 TCTGGGTTAAGTCCCGAAGGCATTTATGCGAGTTA-CTA-AA
1 -CCGGGCTAAGTCCCGAAGGCGTTTATACGAG-TAGCTATAA
* * * *
82116591 TCCGGGTTAAGTCCCGAAGGTGTTTATGCGAGTTGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCGTTTATACGAGTAGCTATAA
* *
82116632 CCGGGCTATGTCCCGAAGGCGTTTGA-ACGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCGTTT-ATACGAGTAGCTATAA
82116672 CCGG
1 CCGG
82116676 TTAAATTCCG
Statistics
Matches: 136, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
39 3 0.02
40 122 0.90
41 11 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCGTTTATACGAGTAGCTATAA
Found at i:82122825 original size:46 final size:46
Alignment explanation
Indices: 82122773--82122938 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
82122763 TTGAGCATCT
82122773 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCC
* *
82122819 GAACTCGTTGAGTTGAGTCCGAGTT--CGT-GGGATGT-AACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G--TCC
* * *
82122866 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCC
* * *
82122912 GAGCTCATTGAGTTGAGTCTGAGTTCA
1 GAACTCGTTGAGTTGAGTCCGAGTTCA
82122939 TGAGATGTAA
Statistics
Matches: 101, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 2 0.02
45 1 0.01
46 52 0.51
47 28 0.28
48 1 0.01
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCC
Found at i:82122877 original size:93 final size:93
Alignment explanation
Indices: 82122767--82122992 Score: 337
Period size: 93 Copynumber: 2.4 Consensus size: 93
82122757 AGATATTTGA
* * *
82122767 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
* *
82122832 TGAGTCCGAGTTCGTGGGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* * *
82122860 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAATGTCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
*
82122925 TGAGTCTGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* *
82122953 GCATCCGAGCTCGTTGAGTTGAGT-CGAAGTTCGCTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCG-AGTTCACTTATGG
82122993 GCGGGTTACA
Statistics
Matches: 120, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 2 0.02
93 118 0.98
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:82122885 original size:47 final size:46
Alignment explanation
Indices: 82122767--82122985 Score: 159
Period size: 46 Copynumber: 4.7 Consensus size: 46
82122757 AGATATTTGA
* * *
82122767 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC--
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GGGATGT-AACTG
82122815 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGGGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGGGATGTAACT-G
* * *
82122860 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TAT-TGA-TG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGGGATGTAACTG
* * * * * *
82122903 CGAATGTCCGAGCTCATTGAGTTGAGTCTGAGTTCATGAGATGTAACTAG
1 -GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGGGATGTAACT-G
*
82122953 GCATCCGAGCTCGTTGAGTTGAGT-CGAAGTTCG
1 GCATCCGAACTCGTTGAGTTGAGTCCG-AGTTCG
82122986 CTTATGGGCG
Statistics
Matches: 139, Mismatches: 17, Indels: 31
0.74 0.09 0.17
Matches are distributed among these distances:
42 3 0.02
43 7 0.05
44 5 0.04
45 4 0.03
46 56 0.40
47 56 0.40
48 4 0.03
49 3 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGGGATGTAACTG
Found at i:82140792 original size:40 final size:40
Alignment explanation
Indices: 82140756--82140848 Score: 150
Period size: 40 Copynumber: 2.3 Consensus size: 40
82140746 CAGCTATTTG
*
82140756 TGGCACTTAGTGTTCGATTCGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTACGATTCGACATAGCTTCGGCTATATA
* *
82140796 TGGCACTTAGTGTACTATTCGACATAGCTTTGGCTATATA
1 TGGCACTTAGTGTACGATTCGACATAGCTTCGGCTATATA
*
82140836 TTGCACTTAGTGT
1 TGGCACTTAGTGT
82140849 GTGATATGAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.38
Consensus pattern (40 bp):
TGGCACTTAGTGTACGATTCGACATAGCTTCGGCTATATA
Found at i:82140864 original size:40 final size:40
Alignment explanation
Indices: 82140758--82140892 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 40
82140748 GCTATTTGTG
*
82140758 GCACTTAGTGT-TCGATTCGACATAGCTTCGGCTATATATG
1 GCACTTAGTGTGT-GATTCGACATAGCTTCGGCTATATATA
* * *
82140798 GCACTTAGTGTACT-ATTCGACATAGCTTTGGCTATATATT
1 GCACTTAGTGT-GTGATTCGACATAGCTTCGGCTATATATA
** * * *
82140838 GCACTTAGTGTGTGATAT-GAGTTAGCTTCAGCTATGTACA
1 GCACTTAGTGTGTGAT-TCGACATAGCTTCGGCTATATATA
*
82140878 GAACTTAGTGTGTGA
1 GCACTTAGTGTGTGA
82140893 GATATTGAGT
Statistics
Matches: 80, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 77 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.36
Consensus pattern (40 bp):
GCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATATA
Found at i:82157899 original size:13 final size:13
Alignment explanation
Indices: 82157881--82157907 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82157871 CGTGTAGGTG
82157881 CACACGGTCGTGT
1 CACACGGTCGTGT
82157894 CACACGGTCGTGT
1 CACACGGTCGTGT
82157907 C
1 C
82157908 TTGCTTCGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.30, T:0.22
Consensus pattern (13 bp):
CACACGGTCGTGT
Found at i:82165466 original size:40 final size:40
Alignment explanation
Indices: 82165407--82165543 Score: 168
Period size: 40 Copynumber: 3.4 Consensus size: 40
82165397 CGGCTATTTG
82165407 TGGCACTTAGTGTGTGATTCGACATAGCTTC-GACTATATA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCAG-CTATATA
* * *
82165447 TGGCATTTAGTGTGCGATTCGACATAGCTTCAGCTCTATA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCAGCTATATA
* * * *
82165487 TTGCACTTAGTGTGTGATTTGAGATAGCTTCAGCTATGTA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCAGCTATATA
** *
82165527 CAGAACTTAGTGTGTGA
1 TGGCACTTAGTGTGTGA
82165544 GATATTAAGT
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 82 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (40 bp):
TGGCACTTAGTGTGTGATTCGACATAGCTTCAGCTATATA
Found at i:82167848 original size:29 final size:31
Alignment explanation
Indices: 82167816--82167900 Score: 102
Period size: 34 Copynumber: 2.6 Consensus size: 31
82167806 TATTTTAAAT
*
82167816 CTAATCTAAAAATG-AAAA-GAAAAGAAAAC
1 CTAATCTAAAAATGAAAAACAAAAAGAAAAC
82167845 CTAATCTAAAAATATGAAAAACTAAAAAGAAAAC
1 CTAATCT-AAAA-ATGAAAAAC-AAAAAGAAAAC
82167879 CTAATCTAAAAATATGAAAAAC
1 CTAATCT-AAAA-ATGAAAAAC
82167901 TAAGGAGAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
29 7 0.14
30 4 0.08
31 3 0.06
32 4 0.08
34 32 0.64
ACGTcount: A:0.64, C:0.12, G:0.07, T:0.18
Consensus pattern (31 bp):
CTAATCTAAAAATGAAAAACAAAAAGAAAAC
Found at i:82167910 original size:34 final size:34
Alignment explanation
Indices: 82167835--82167903 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
82167825 AAATGAAAAG
82167835 AAAAGAAAACCTAATCTAAAAATATGAAAAACTA
1 AAAAGAAAACCTAATCTAAAAATATGAAAAACTA
82167869 AAAAGAAAACCTAATCTAAAAATATGAAAAACTA
1 AAAAGAAAACCTAATCTAAAAATATGAAAAACTA
82167903 A
1 A
82167904 GGAGAAATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.17
Consensus pattern (34 bp):
AAAAGAAAACCTAATCTAAAAATATGAAAAACTA
Found at i:82170280 original size:27 final size:27
Alignment explanation
Indices: 82170242--82170296 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
82170232 CGTCATTTCG
82170242 TGATAGGTTTTAAATATTTCTAATTAC
1 TGATAGGTTTTAAATATTTCTAATTAC
82170269 TGATAGGTTTTAAATATTTCTAATTAC
1 TGATAGGTTTTAAATATTTCTAATTAC
82170296 T
1 T
82170297 CGTTCTTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.49
Consensus pattern (27 bp):
TGATAGGTTTTAAATATTTCTAATTAC
Found at i:82175032 original size:26 final size:26
Alignment explanation
Indices: 82174955--82175039 Score: 82
Period size: 26 Copynumber: 3.2 Consensus size: 26
82174945 GCTTTCGGGC
*
82174955 CCATTTTTGCCCCTAAGTAAAAATTA
1 CCATTTTTGCCCCTAAGTAAAAATGA
* * * * *
82174981 CGA-TATTACCCTTATAATATGAAAATGA
1 CCATTTTTGCCCCTA-AGTA--AAAATGA
82175009 CCATTTTTGCCCCTAAGTAAAAATGA
1 CCATTTTTGCCCCTAAGTAAAAATGA
82175035 CCATT
1 CCATT
82175040 ATACCCCTAG
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
25 8 0.18
26 17 0.39
28 11 0.25
29 8 0.18
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.33
Consensus pattern (26 bp):
CCATTTTTGCCCCTAAGTAAAAATGA
Found at i:82175154 original size:20 final size:20
Alignment explanation
Indices: 82175088--82175154 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
82175078 ATTTTAGTAA
*
82175088 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
82175108 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
82175128 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
82175148 ACATGAT
1 ACATGAT
82175155 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:82175232 original size:24 final size:24
Alignment explanation
Indices: 82175204--82175321 Score: 161
Period size: 23 Copynumber: 5.0 Consensus size: 24
82175194 GAGGAAGTGC
82175204 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
82175228 AAAA-GGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
82175251 -AAAGAGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
82175274 AAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
82175298 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
82175322 ATGATAAAGC
Statistics
Matches: 83, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
22 3 0.04
23 37 0.45
24 33 0.40
25 10 0.12
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:82175549 original size:31 final size:31
Alignment explanation
Indices: 82175514--82175577 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
82175504 CGTTTACAGT
82175514 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
82175545 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
82175576 AA
1 AA
82175578 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:82183533 original size:20 final size:19
Alignment explanation
Indices: 82183497--82183585 Score: 97
Period size: 20 Copynumber: 4.5 Consensus size: 19
82183487 AAGAGCAGCG
* *
82183497 AAGTGCAGACAAAGGCACA
1 AAGTGCAAACAGAGGCACA
* *
82183516 AATGTGCAAACAGGGGCACTG
1 AA-GTGCAAACAGAGGCAC-A
82183537 AAGTGCAAACAGAGGCACCA
1 AAGTGCAAACAGAGGCA-CA
*
82183557 AAGTGCAAACAGAGGCACTG
1 AAGTGCAAACAGAGGCAC-A
82183577 AAGTGCAAA
1 AAGTGCAAA
82183586 TCCCATACAA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
19 3 0.05
20 53 0.90
21 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.28, T:0.09
Consensus pattern (19 bp):
AAGTGCAAACAGAGGCACA
Found at i:82183540 original size:40 final size:40
Alignment explanation
Indices: 82183496--82183585 Score: 137
Period size: 40 Copynumber: 2.2 Consensus size: 40
82183486 CAAGAGCAGC
* *
82183496 GAAGTGCAGACAAAGGCA-CAAATGTGCAAACAGGGGCACT
1 GAAGTGCAAACAAAGGCACCAAA-GTGCAAACAGAGGCACT
*
82183536 GAAGTGCAAACAGAGGCACCAAAGTGCAAACAGAGGCACT
1 GAAGTGCAAACAAAGGCACCAAAGTGCAAACAGAGGCACT
82183576 GAAGTGCAAA
1 GAAGTGCAAA
82183586 TCCCATACAA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 42 0.91
41 4 0.09
ACGTcount: A:0.42, C:0.20, G:0.29, T:0.09
Consensus pattern (40 bp):
GAAGTGCAAACAAAGGCACCAAAGTGCAAACAGAGGCACT
Found at i:82185074 original size:43 final size:43
Alignment explanation
Indices: 82185020--82185101 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
82185010 GAGATATGTG
* *
82185020 GCATCCAAGCTCGTTGAGTGGTCCGAGTTCATTATGGATCGGA
1 GCATCCAAGCTCATTGAGTGGTCCGAGTTCATAATGGATCGGA
*
82185063 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATAATGGAT
1 GCATCCAAGCTCATTGAGTGGTCCGAGTTCATAATGGAT
82185102 GTGATACACG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (43 bp):
GCATCCAAGCTCATTGAGTGGTCCGAGTTCATAATGGATCGGA
Found at i:82190572 original size:13 final size:13
Alignment explanation
Indices: 82190556--82190588 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82190546 TTTGATTAAA
*
82190556 TTAGTTAATTAGT
1 TTAGATAATTAGT
82190569 TTAGATAATTAGT
1 TTAGATAATTAGT
82190582 TTA-ATAA
1 TTAGATAA
82190589 ACAAACCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:82190877 original size:5 final size:5
Alignment explanation
Indices: 82190869--82190893 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
82190859 TTTTTCTTGC
82190869 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
82190894 TACTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:82192425 original size:46 final size:46
Alignment explanation
Indices: 82192362--82192533 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
82192352 TGGTTGAGCA
82192362 TCCGAACT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * * *
82192407 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
*
82192452 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
82192500 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82192534 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
45 11 0.11
46 52 0.50
47 28 0.27
48 4 0.04
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:82200708 original size:40 final size:40
Alignment explanation
Indices: 82200688--82200873 Score: 372
Period size: 40 Copynumber: 4.7 Consensus size: 40
82200678 TTGCACAAAG
82200688 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
82200728 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
82200768 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
82200808 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
82200848 GCCTTCGGGTCTTAGCCCGGATATAT
1 GCCTTCGGGTCTTAGCCCGGATATAT
82200874 TTCCAATGTT
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
Found at i:82207664 original size:40 final size:39
Alignment explanation
Indices: 82207567--82207748 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 39
82207557 CTACTCGTTC
*
82207567 AAAGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAT
1 AAAGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCAT
*
82207606 AAA-CCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
1 AAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAT
*
82207644 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
1 AAA-GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAT
* * * * *
82207684 AAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 AAA-GCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAT
82207725 AAAGCCTTCGGGACTTAGCCCGGA
1 AAAGCCTTCGGGACTTAGCCCGGA
82207749 CATCATTCGA
Statistics
Matches: 128, Mismatches: 9, Indels: 11
0.86 0.06 0.07
Matches are distributed among these distances:
38 33 0.26
39 8 0.06
40 77 0.60
41 10 0.08
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
AAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAT
Found at i:82207736 original size:80 final size:78
Alignment explanation
Indices: 82207532--82207748 Score: 228
Period size: 80 Copynumber: 2.8 Consensus size: 78
82207522 CGAATCACGT
* * * ** *
82207532 ACCTTCGGAATTTAA-CCGGATATAGCT-ACTCGTTCAAAGCCTTCGGGACATAGCCCGG-TTAT
1 ACCTTCGGGACTTAACCCGGATATAG-TAACTAGCACAAAGCCTTCGGGACTTAGCCCGGATTAT
82207594 AGTAACTCGCATAA
65 AGTAACTCGCATAA
* * * *
82207608 ACCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGGATT-T
1 ACCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGGATTAT
82207672 AGTAACTCGCATAA
65 AGTAACTCGCATAA
** *
82207686 ATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 A--CCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCGGA
82207749 CATCATTCGA
Statistics
Matches: 118, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
76 14 0.12
77 17 0.14
78 34 0.29
79 5 0.04
80 41 0.35
81 7 0.06
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (78 bp):
ACCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGATTATA
GTAACTCGCATAA
Found at i:82215696 original size:40 final size:40
Alignment explanation
Indices: 82215622--82215750 Score: 181
Period size: 40 Copynumber: 3.2 Consensus size: 40
82215612 CTACTCGTTC
* * *
82215622 AAACGCCTT-GGGACATAGCCC-GATTATAGCAACTCGCAT
1 AAACGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCAT
*
82215661 AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCACAT
1 AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
*
82215701 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
1 AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
*
82215741 AAATGCCTTC
1 AAACGCCTTC
82215751 AGATCTAGTC
Statistics
Matches: 82, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 9 0.11
40 69 0.84
41 4 0.05
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (40 bp):
AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
Found at i:82229286 original size:24 final size:24
Alignment explanation
Indices: 82229241--82229287 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
82229231 TTTGCATGAA
*
82229241 CATATACTCATTAAGCTTTAATTT
1 CATATACTCATTAAGCTCTAATTT
82229265 CATAT-CTCATTAAGCCTCTAATT
1 CATATACTCATTAAG-CTCTAATT
82229288 AAATTCCAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.43
Consensus pattern (24 bp):
CATATACTCATTAAGCTCTAATTT
Found at i:82229806 original size:68 final size:66
Alignment explanation
Indices: 82229613--82229842 Score: 177
Period size: 68 Copynumber: 3.5 Consensus size: 66
82229603 GTGAACATGA
* * * * * *
82229613 ACACTTAGTACCACCCATGTGACCTAGC--CAC-TTTATCTCGTAGCTCTCTTATCTACATGGTG
1 ACACTTAGCATCACACATGTGACCTAGCTACACATTTATCCCGTAGCTCTCTTGTCTACAT-G-A
*
82229675 TCCT
64 T-AT
* * * * * *
82229679 TCACCTAGAACCACACATGCGACCTAGCT--ACATTTATCCCGTAGCTCTCTTGTCTACATGGTA
1 ACACTTAGCATCACACATGTGACCTAGCTACACATTTATCCCGTAGCTCTCTTGTCTACATGATA
82229742 T
66 T
* * *
82229743 ACA-TCTCGTATCACACATGTGACCTAGCTACCACATTGTATCTCGTAGCTCTCTTGTAC-ACAT
1 ACACT-TAGCATCACACATGTGACCTAGCTA-CACATT-TATCCCGTAGCTCTCTTGT-CTACAT
*
82229806 GATGT
62 GATAT
* *
82229811 GCACTTAGCATCATACATGTGACCTAGCTACA
1 ACACTTAGCATCACACATGTGACCTAGCTACA
82229843 TACCATCTGT
Statistics
Matches: 134, Mismatches: 21, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
64 23 0.17
65 2 0.01
66 26 0.19
67 32 0.24
68 49 0.37
69 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (66 bp):
ACACTTAGCATCACACATGTGACCTAGCTACACATTTATCCCGTAGCTCTCTTGTCTACATGATA
T
Found at i:82235352 original size:13 final size:12
Alignment explanation
Indices: 82235324--82235362 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
82235314 TATAGTAAAT
*
82235324 AAAGAAAGAAAA
1 AAAGAAAGAAAC
82235336 AAAGAAATGAAAC
1 AAAGAAA-GAAAC
82235349 AAAGAAAAGAAAC
1 AAAG-AAAGAAAC
82235362 A
1 A
82235363 TAATAGGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 7 0.29
13 14 0.58
14 3 0.12
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (12 bp):
AAAGAAAGAAAC
Found at i:82237511 original size:53 final size:54
Alignment explanation
Indices: 82237454--82237649 Score: 184
Period size: 53 Copynumber: 3.6 Consensus size: 54
82237444 TTTCCTTTTT
* * * *
82237454 GAACTTACCATTGCCATGTCTTGATATGGTCTTACTTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATA
* *
82237507 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATAGG-A-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTAC-TTGGTATCC-TTGCCTTATA
* * * * * * * *
82237561 GTAAGTCATCAATGCCATGTCTTTACATGGTCTTACATGATTTCCTTTCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATA
* * *
82237616 GAACTTATCAATGCCATGCCTTGGCATGGT-TTAC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTAC
82237650 ATGATGCCCT
Statistics
Matches: 116, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
52 2 0.02
53 44 0.38
54 29 0.25
55 39 0.34
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATA
Found at i:82237594 original size:55 final size:54
Alignment explanation
Indices: 82237465--82237651 Score: 186
Period size: 55 Copynumber: 3.5 Consensus size: 54
82237455 AACTTACCAT
* * * *
82237465 TGCCATGTCTTGATATGGTCTTAC-TTGGTATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATAGG-A-CCTTTGCCTTATAGAACTCATCAA
* *
82237518 TGCCATGCCTTGGCATGGTCTTACATAGGACCTTTGCCTTATAGTAAGTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATAGGACCTTTGCCTTATAG-AACTCATCAA
* * *** *
82237573 TGCCATGTCTTTACATGGTCTTACATGATTTCCTTT-CCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACAT-AGGACCTTTGCCTTATAGAACTCATCAA
*
82237627 TGCCATGCCTTGGCATGGT-TTACAT
1 TGCCATGCCTTGACATGGTCTTACAT
82237652 GATGCCCTTA
Statistics
Matches: 112, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 37 0.33
54 28 0.25
55 39 0.35
56 6 0.05
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATAGGACCTTTGCCTTATAGAACTCATCAA
Found at i:82237713 original size:47 final size:47
Alignment explanation
Indices: 82237640--82237757 Score: 184
Period size: 47 Copynumber: 2.5 Consensus size: 47
82237630 CATGCCTTGG
* ** * *
82237640 CATGGT-TTACATGATGCCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCACGTTCCAAA
82237686 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCACGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCACGTTCCAAA
82237733 CATGGTCTTACATGGTATCCTTGTC
1 CATGGTCTTACATGGTATCCTTGTC
82237758 CTAGTGCCAA
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
46 6 0.09
47 60 0.91
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCACGTTCCAAA
Found at i:82237836 original size:47 final size:47
Alignment explanation
Indices: 82237784--82237896 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 47
82237774 ATCTTGATGT
* *
82237784 GGTCTTACATGGAGTCCTTAATCAATACCGATGCCATGTCTTGACATA
1 GGTCTTACATGGAGTCCTTAATCAATACCAATGCCATGTATTGACA-A
* **
82237832 -GTCTTACACGG-GATCCTT--TCCTTACCAATGCCATGTATTGACAA
1 GGTCTTACATGGAG-TCCTTAATCAATACCAATGCCATGTATTGACAA
82237876 GGTCTTACATGGTA-TCCTTAA
1 GGTCTTACATGG-AGTCCTTAA
82237897 CTGTCAATTC
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
44 1 0.02
45 36 0.68
46 1 0.02
47 15 0.28
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (47 bp):
GGTCTTACATGGAGTCCTTAATCAATACCAATGCCATGTATTGACAA
Found at i:82237874 original size:45 final size:45
Alignment explanation
Indices: 82237809--82237894 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
82237799 CCTTAATCAA
* *
82237809 TACCGATGCCATGTCTTGACATA-GTCTTACACGGGATCCTTTCCT
1 TACCAATGCCATGTATTGACA-AGGTCTTACACGGGATCCTTTCCT
* *
82237854 TACCAATGCCATGTATTGACAAGGTCTTACATGGTATCCTT
1 TACCAATGCCATGTATTGACAAGGTCTTACACGGGATCCTT
82237895 AACTGTCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (45 bp):
TACCAATGCCATGTATTGACAAGGTCTTACACGGGATCCTTTCCT
Found at i:82239624 original size:18 final size:18
Alignment explanation
Indices: 82239601--82239710 Score: 105
Period size: 18 Copynumber: 6.1 Consensus size: 18
82239591 TAAATAAAGG
*
82239601 TACTGAATAACTGACTGC
1 TACTGAATAACTGACTGT
* *
82239619 TACTGAATAACTAATTGT
1 TACTGAATAACTGACTGT
* **
82239637 TACTGGATAACTGACTAC
1 TACTGAATAACTGACTGT
* *
82239655 TACTGAATAATTGATTGT
1 TACTGAATAACTGACTGT
* * *
82239673 TATTGAATAATTTA-TAGT
1 TACTGAATAACTGACT-GT
82239691 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGT
82239709 TA
1 TA
82239711 AAGAGTGACT
Statistics
Matches: 72, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
17 1 0.01
18 70 0.97
19 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:82239648 original size:36 final size:36
Alignment explanation
Indices: 82239601--82239682 Score: 119
Period size: 36 Copynumber: 2.3 Consensus size: 36
82239591 TAAATAAAGG
*
82239601 TACTGAATAACTGACTGCTACTGAATAACTAATTGT
1 TACTGAATAACTGACTACTACTGAATAACTAATTGT
* * *
82239637 TACTGGATAACTGACTACTACTGAATAATTGATTGT
1 TACTGAATAACTGACTACTACTGAATAACTAATTGT
*
82239673 TATTGAATAA
1 TACTGAATAA
82239683 TTTATAGTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (36 bp):
TACTGAATAACTGACTACTACTGAATAACTAATTGT
Found at i:82239680 original size:54 final size:54
Alignment explanation
Indices: 82239601--82239706 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 54
82239591 TAAATAAAGG
* *
82239601 TACTGAATAACTGACTGCTACTGAATAACTAATTGTTACTGGATAACTGACTAC
1 TACTGAATAACTGACTGCTACTGAATAACTAATAGTTACTGAATAACTGACTAC
* * * * * *
82239655 TACTGAATAATTGATTGTTATTGAATAATTTATAGTTACTGAATAACTGACT
1 TACTGAATAACTGACTGCTACTGAATAACTAATAGTTACTGAATAACTGACT
82239707 GTTAAAGAGT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (54 bp):
TACTGAATAACTGACTGCTACTGAATAACTAATAGTTACTGAATAACTGACTAC
Found at i:82246042 original size:68 final size:67
Alignment explanation
Indices: 82245968--82246117 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
82245958 CATCATGTGT
* * * *
82245968 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
82246030 ATGTAG
62 ATGTAG
** * *
82246036 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
82246101 AG
66 AG
82246103 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
82246118 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:82246073 original size:64 final size:64
Alignment explanation
Indices: 82245992--82246174 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 64
82245982 AGACATTATG
* *
82245992 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
82246056 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
82246121 AA
63 AA
* * * * *
82246123 ACTG--GCTAGGTCACAAGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAG
82246175 TCGAACTATA
Statistics
Matches: 96, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 15 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:82247264 original size:2 final size:2
Alignment explanation
Indices: 82247257--82247283 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
82247247 CATGTATGTG
82247257 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
82247284 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82248996 original size:14 final size:14
Alignment explanation
Indices: 82248979--82249005 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
82248969 TAGGAAGGTC
82248979 ATATGAAAATTTTG
1 ATATGAAAATTTTG
82248993 ATATGAAAATTTT
1 ATATGAAAATTTT
82249006 ATCGATTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (14 bp):
ATATGAAAATTTTG
Found at i:82257031 original size:39 final size:39
Alignment explanation
Indices: 82256950--82257112 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
82256940 TATGGTAACC
** *
82256950 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
82256990 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82257029 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82257068 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
82257107 CGCACA
1 CGCACA
82257113 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:82261975 original size:25 final size:25
Alignment explanation
Indices: 82261931--82261979 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
82261921 TTATAATATG
* * *
82261931 AAAAATGACTATTTTGCCCCTAGGT
1 AAAAATGACCATTATACCCCTAGGT
82261956 AAAAATGACCATTATACCCCTAGG
1 AAAAATGACCATTATACCCCTAGG
82261980 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:82262034 original size:10 final size:10
Alignment explanation
Indices: 82262019--82262079 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 10
82262009 TTGTTATTAT
82262019 ACATGATATG
1 ACATGATATG
82262029 ACATGATATG
1 ACATGATATG
*
82262039 CACATGATACG
1 -ACATGATATG
*** *
82262050 TTTTGATATTC
1 ACATGATA-TG
82262061 ACATGATATG
1 ACATGATATG
*
82262071 CCATGATAT
1 ACATGATAT
82262080 ACTCATTATA
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
10 24 0.63
11 14 0.37
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (10 bp):
ACATGATATG
Found at i:82262044 original size:21 final size:21
Alignment explanation
Indices: 82262019--82262079 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
82262009 TTGTTATTAT
82262019 ACATGATATGACATGATATGC
1 ACATGATATGACATGATATGC
* *** *
82262040 ACATGATACGTTTTGATATTC
1 ACATGATATGACATGATATGC
*
82262061 ACATGATATGCCATGATAT
1 ACATGATATGACATGATAT
82262080 ACTCATTATA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (21 bp):
ACATGATATGACATGATATGC
Found at i:82268621 original size:18 final size:18
Alignment explanation
Indices: 82268595--82268630 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
82268585 GTTATTATGC
82268595 TTGAATTGAATTGTGTGA
1 TTGAATTGAATTGTGTGA
* *
82268613 TTGAGTTGATTTGTGTGA
1 TTGAATTGAATTGTGTGA
82268631 GATGATATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (18 bp):
TTGAATTGAATTGTGTGA
Found at i:82271443 original size:40 final size:39
Alignment explanation
Indices: 82271398--82271605 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
82271388 CGGAATACAA
*
82271398 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82271438 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82271478 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * ** * *
82271518 CCAGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
82271558 CCGGATATAATTACTAGCACAAATGTCTTTGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
82271598 CCGGATAT
1 CCGGATAT
82271606 CATTCAATTT
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 1 0.01
40 139 0.99
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82274829 original size:40 final size:40
Alignment explanation
Indices: 82274774--82274991 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
82274764 CGGATGATGA
* * *
82274774 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
82274814 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
82274854 ACAGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82274894 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
82274934 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
82274974 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82274992 TACCTGCCTT
Statistics
Matches: 157, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 16 0.10
40 141 0.90
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82277753 original size:20 final size:20
Alignment explanation
Indices: 82277728--82277772 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
82277718 TTGACCTCAA
82277728 GCCCTACATATCTCCTCATT
1 GCCCTACATATCTCCTCATT
82277748 GCCCTACATATCTCCTCATT
1 GCCCTACATATCTCCTCATT
82277768 GCCCT
1 GCCCT
82277773 TGTTAGTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.18, C:0.42, G:0.07, T:0.33
Consensus pattern (20 bp):
GCCCTACATATCTCCTCATT
Found at i:82279966 original size:72 final size:73
Alignment explanation
Indices: 82279808--82279971 Score: 249
Period size: 72 Copynumber: 2.3 Consensus size: 73
82279798 TCAACTTTAC
*
82279808 CCTTCTCCCTCTTTTTCATTCTCATGTCTGAAGCATCTTCTTTTTTTTCATTCTTCTTCCCAAGT
1 CCTTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTTTTTTTCATTCTTCTTCCCAAGT
*
82279873 CCTTCCAA
66 CCTTCAAA
* * * **
82279881 CCTTCACTCTCTTTTTCATTTTCACGTCTGAAGCATCTTC-TTTTTTTCATTCTTCTTCCCATTT
1 CCTTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTTTTTTTCATTCTTCTTCCCAAGT
*
82279945 TCTTCAAA
66 CCTTCAAA
82279953 CCTTCTCCCTCTTTTTCAT
1 CCTTCTCCCTCTTTTTCAT
82279972 GCTTTTATCC
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
72 45 0.56
73 36 0.44
ACGTcount: A:0.13, C:0.32, G:0.04, T:0.50
Consensus pattern (73 bp):
CCTTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTTTTTTTCATTCTTCTTCCCAAGT
CCTTCAAA
Found at i:82283088 original size:33 final size:33
Alignment explanation
Indices: 82283049--82283115 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
82283039 AACCCTTGTT
82283049 TCCATCATGGATGTTTGAACTTGATCAAATTGG
1 TCCATCATGGATGTTTGAACTTGATCAAATTGG
* *
82283082 TCCATCATGGATGTTTGGATTTGATCAAATTGG
1 TCCATCATGGATGTTTGAACTTGATCAAATTGG
82283115 T
1 T
82283116 TGGTTTAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.39
Consensus pattern (33 bp):
TCCATCATGGATGTTTGAACTTGATCAAATTGG
Found at i:82283869 original size:43 final size:46
Alignment explanation
Indices: 82283808--82283896 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 46
82283798 ATTACAACAT
82283808 CATTCCATTCAACCAAACACAAGAA-T-CT-ATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGTTCTATTC
* * ***
82283851 CATTCCATTCGACTAAACAGTTGAATTACTGATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGTTCTATTC
82283897 AATTACAGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
43 20 0.53
44 1 0.03
45 2 0.05
46 15 0.39
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.34
Consensus pattern (46 bp):
CATTCCATTCAACCAAACACAAGAATTACTGATTACAGTTCTATTC
Found at i:82283903 original size:16 final size:16
Alignment explanation
Indices: 82283882--82283960 Score: 113
Period size: 16 Copynumber: 4.9 Consensus size: 16
82283872 TGAATTACTG
*
82283882 ATTACAGTTCTATTCA
1 ATTACAGCTCTATTCA
82283898 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
82283914 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
* *
82283930 TTTACAACTCTATTCA
1 ATTACAGCTCTATTCA
* *
82283946 ATTATAGCCCTATTC
1 ATTACAGCTCTATTC
82283961 TGTTAGAGTG
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 56 1.00
ACGTcount: A:0.30, C:0.24, G:0.05, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:82285949 original size:22 final size:22
Alignment explanation
Indices: 82285920--82285987 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
82285910 TGCACAAATG
82285920 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
* *
82285942 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTA-AAGTGCTA
*
82285964 AACAGAGAGCACTTAACGTGCTA
1 AACAGAGAGCAC-TAAAGTGCTA
82285987 A
1 A
82285988 TAATAGAACA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 29 0.74
23 8 0.21
24 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:82286000 original size:30 final size:29
Alignment explanation
Indices: 82285964--82286020 Score: 96
Period size: 29 Copynumber: 1.9 Consensus size: 29
82285954 AGATGTGCTA
82285964 AACAGAGAGCACTTAACGTGCTAATAATAG
1 AACAGAGAGCAC-TAACGTGCTAATAATAG
*
82285994 AACAGAGAGCACTAATGTGCTAATAAT
1 AACAGAGAGCACTAACGTGCTAATAAT
82286021 CAGAGAGCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (29 bp):
AACAGAGAGCACTAACGTGCTAATAATAG
Found at i:82287180 original size:17 final size:17
Alignment explanation
Indices: 82287158--82287203 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 17
82287148 TACTTATGTT
*
82287158 TTATATATTATATTATA
1 TTATATATTATATAATA
82287175 TTATATA-TA-ATAATA
1 TTATATATTATATAATA
*
82287190 TAATATATTATATA
1 TTATATATTATATA
82287204 TTAATACTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 11 0.44
16 4 0.16
17 10 0.40
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTATATATTATATAATA
Found at i:82287196 original size:22 final size:23
Alignment explanation
Indices: 82287166--82287209 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
82287156 TTTTATATAT
*
82287166 TATATTATATTATATA-TAATAA
1 TATAATATATTATATATTAATAA
82287188 TATAATATATTATATATTAATA
1 TATAATATATTATATATTAATA
82287210 CTTAAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TATAATATATTATATATTAATAA
Found at i:82292947 original size:28 final size:28
Alignment explanation
Indices: 82292910--82292973 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
82292900 CAGTGTACGG
* *
82292910 AATATCGAGAATGGCACTTAATGTGCGA
1 AATATTGAGAATGGCACTTAATGTGCAA
* * *
82292938 GATATTGAGAATGTCACTTAGTGTGCAA
1 AATATTGAGAATGGCACTTAATGTGCAA
82292966 AATATTGA
1 AATATTGA
82292974 ATGATTAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (28 bp):
AATATTGAGAATGGCACTTAATGTGCAA
Found at i:82293090 original size:39 final size:39
Alignment explanation
Indices: 82293046--82293229 Score: 253
Period size: 39 Copynumber: 4.7 Consensus size: 39
82293036 GACTTTATAA
*
82293046 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
82293085 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
82293124 TGGTGTTATATCCGGGCTAAGCCCCAAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
82293163 TGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTAC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
* *
82293202 TAGTATTATATCCGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
82293230 CATGCTTTGT
Statistics
Matches: 131, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 111 0.85
40 20 0.15
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:82295345 original size:6 final size:6
Alignment explanation
Indices: 82295313--82295356 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
82295303 ACAGTACCTA
* *
82295313 AACAGT AATCAGT AACGGT AGCAGT AACAGT AACAGT AACAGT A
1 AACAGT AA-CAGT AACAGT AACAGT AACAGT AACAGT AACAGT A
82295357 TTGAACACAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.18
Consensus pattern (6 bp):
AACAGT
Found at i:82296421 original size:17 final size:18
Alignment explanation
Indices: 82296399--82296432 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
82296389 TCTAGTTTTT
82296399 CCTTTTTCTTT-TCTTTC
1 CCTTTTTCTTTCTCTTTC
82296416 CCTTTTTCTTTCTCTTT
1 CCTTTTTCTTTCTCTTT
82296433 TTCTCCACTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
CCTTTTTCTTTCTCTTTC
Found at i:82296422 original size:12 final size:12
Alignment explanation
Indices: 82296407--82296436 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
82296397 TTCCTTTTTC
82296407 TTTTCTTTCCCT
1 TTTTCTTTCCCT
*
82296419 TTTTCTTTCTCT
1 TTTTCTTTCCCT
82296431 TTTTCT
1 TTTTCT
82296437 CCACTGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTCTTTCCCT
Found at i:82296994 original size:20 final size:19
Alignment explanation
Indices: 82296967--82297008 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
82296957 ATATAAAACC
82296967 ATAACAATTA-ATAATTATA
1 ATAACAATTATATAA-TATA
82296986 ATAACCAATTATATAATATA
1 ATAA-CAATTATATAATATA
82297006 ATA
1 ATA
82297009 TATATAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (19 bp):
ATAACAATTATATAATATA
Found at i:82304982 original size:40 final size:39
Alignment explanation
Indices: 82304936--82305074 Score: 131
Period size: 39 Copynumber: 3.5 Consensus size: 39
82304926 CGGATATAAC
*
82304936 GACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGGTTATAGT
1 GACTCGCACAAATGCCTTCGGGACTGAA-CCCGGTT-TAGT
* * *
82304976 GACTCGCACGAATGCCTTCGGGACTTAACCGGGTTTAGT
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGGTTTAGT
* * * *
82305015 AACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTA-T
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGG-TTTAGT
* *
82305053 TATCTCGCACGAATGCCTTCGG
1 GA-CTCGCACAAATGCCTTCGG
82305075 ATCCTAGTCC
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
38 10 0.12
39 44 0.52
40 28 0.33
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (39 bp):
GACTCGCACAAATGCCTTCGGGACTGAACCCGGTTTAGT
Found at i:82305126 original size:79 final size:78
Alignment explanation
Indices: 82304944--82305126 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 78
82304934 ACGACTCGCT
** * *
82304944 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGA-CTCGCACGAATGCCTTCGGGACTTAACCG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TA-TTATCTCGCACGAATGCCTTCGGGACCTAACCG
* *
82305007 GGTTTAGTAACTTGCA
63 GATATAGTAACTTGCA
* *
82305023 CAAATGCCTTCGGGCTTAGCCCGGATTTATTATCTCGCACGAATGCCTTC-GGATCCTAGTCCGG
1 CAAATGCCTTCGGACTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGGA-CCTA-ACCGG
*
82305087 ATATAGTCACTTAGCA
64 ATATAGTAACTT-GCA
82305103 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGA
82305127 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
77 5 0.06
78 32 0.36
79 45 0.51
80 7 0.08
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGGACCTAACCGGAT
ATAGTAACTTGCA
Found at i:82311362 original size:79 final size:81
Alignment explanation
Indices: 82311261--82311445 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 81
82311251 ACGACTCGCT
** *
82311261 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGA-CTCGCACGAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TA-TGATCTCGCACGAATGCCTTC-GGATCCTAACC
** *
82311323 CGGGTTTAGTAACTT-GCA
63 CGCATATAGTAACTTAGCA
* **
82311341 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGATCCTAGTCCGC
1 CAAATGCCTTCGGGACTTAGCCCGGATTTATGATCTCGCACGAATGCCTTCGGATCCTAACCCGC
*
82311405 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
82311421 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82311446 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 5 0.06
79 51 0.57
80 34 0.38
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTATGATCTCGCACGAATGCCTTCGGATCCTAACCCGC
ATATAGTAACTTAGCA
Found at i:82311386 original size:39 final size:40
Alignment explanation
Indices: 82311254--82311392 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 40
82311244 GGATATAACG
* * * *
82311254 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TTATAGTG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
*
82311294 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * *
82311334 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
*
82311373 TCTCGCACGAATGCCTTCGG
1 ACTCGCACGAATGCCTTCGG
82311393 ATCCTAGTCC
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 32 0.38
40 49 0.58
41 4 0.05
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:82316164 original size:17 final size:17
Alignment explanation
Indices: 82316142--82316174 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
82316132 ATTAAGTTTT
82316142 TAAGATTCATTCATTTC
1 TAAGATTCATTCATTTC
*
82316159 TAAGATTCATTTATTT
1 TAAGATTCATTCATTT
82316175 TCCTTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.12, G:0.06, T:0.52
Consensus pattern (17 bp):
TAAGATTCATTCATTTC
Found at i:82316467 original size:17 final size:17
Alignment explanation
Indices: 82316445--82316477 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
82316435 TTTAGGATAA
*
82316445 ATTTTGATTGATTTATG
1 ATTTTGATTGACTTATG
82316462 ATTTTGATTGACTTAT
1 ATTTTGATTGACTTAT
82316478 CTTGAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.58
Consensus pattern (17 bp):
ATTTTGATTGACTTATG
Found at i:82319827 original size:31 final size:31
Alignment explanation
Indices: 82319786--82319849 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
82319776 CCTTTTCATA
*
82319786 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
82319817 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
82319848 TT
1 TT
82319850 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:82320095 original size:24 final size:24
Alignment explanation
Indices: 82320043--82320232 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
82320033 GCTTTATCAT
*
82320043 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
82320068 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
82320092 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
82320115 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
82320139 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
82320163 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
82320187 ATAACTGGGGCATAAGCAC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
82320210 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
82320233 TCACTTCCTC
Statistics
Matches: 151, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
23 42 0.28
24 97 0.64
25 12 0.08
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:82320119 original size:47 final size:48
Alignment explanation
Indices: 82320042--82320233 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 48
82320032 TGCTTTATCA
* *
82320042 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
82320091 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
82320138 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
82320186 GATAACTGGGGCATAAGCAC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
82320233 T
1 T
82320234 CACTTCCTCC
Statistics
Matches: 132, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
47 70 0.53
48 49 0.37
49 13 0.10
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:82320143 original size:71 final size:72
Alignment explanation
Indices: 82320043--82320233 Score: 280
Period size: 71 Copynumber: 2.7 Consensus size: 72
82320033 GCTTTATCAT
* *
82320043 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
82320107 GCCC-TTTA
64 GCCCTTTTA
* * *
82320115 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
82320180 CCTTTTG
66 CCTTTTA
*
82320187 ATAACTGGGGCATAAGCAC-TTTAATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
82320234 CACTTCCTCC
Statistics
Matches: 108, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
71 76 0.70
72 32 0.30
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTTA
Found at i:82320304 original size:9 final size:9
Alignment explanation
Indices: 82320290--82320366 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
82320280 ATCTCGTGTG
82320290 CATATCATA
1 CATATCATA
*
82320299 CATATCATGTG
1 CATATCA--TA
82320310 CATATCATA
1 CATATCATA
* *
82320319 CATGTCATGTG
1 CATATCA--TA
82320330 CATATCATA
1 CATATCATA
*
82320339 CATATCATGTG
1 CATATCA--TA
82320350 CATATCATA
1 CATATCATA
82320359 CATATCAT
1 CATATCAT
82320367 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:82320309 original size:20 final size:20
Alignment explanation
Indices: 82320286--82320368 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
82320276 GAACATCTCG
82320286 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
82320306 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
82320326 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
82320346 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
82320366 TGT
1 TGT
82320369 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:82320315 original size:11 final size:11
Alignment explanation
Indices: 82320286--82320357 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
82320276 GAACATCTCG
82320286 TGTGCATATCA
1 TGTGCATATCA
*
82320297 --TACATATCA
1 TGTGCATATCA
82320306 TGTGCATATCA
1 TGTGCATATCA
* *
82320317 --TACATGTCA
1 TGTGCATATCA
82320326 TGTGCATATCA
1 TGTGCATATCA
*
82320337 --TACATATCA
1 TGTGCATATCA
82320346 TGTGCATATCA
1 TGTGCATATCA
82320357 T
1 T
82320358 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:82321713 original size:27 final size:27
Alignment explanation
Indices: 82321693--82322222 Score: 610
Period size: 27 Copynumber: 19.6 Consensus size: 27
82321683 AGGGTATTTT
*
82321693 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
82321720 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
82321747 AGTAATTCTATAAATTGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
82321774 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
82321801 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
82321828 -GATAATTATGTAAATC-AGGGGTAAAAT
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* * *
82321855 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
82321882 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
82321909 AGTAATTCTGTAAA-CTAAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
82321936 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
82321963 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
82321990 GGTAATTCTATAAATCGAAGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
82322017 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
82322044 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* * *
82322071 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
82322098 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
82322125 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * **
82322152 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
82322179 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
82322206 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
82322223 GGAGTACTTT
Statistics
Matches: 438, Mismatches: 50, Indels: 30
0.85 0.10 0.06
Matches are distributed among these distances:
26 7 0.02
27 424 0.97
28 7 0.02
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:82324113 original size:18 final size:19
Alignment explanation
Indices: 82324070--82324113 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
82324060 ACAGTACCTA
*
82324070 AATAGTAATCAGTAACGGT
1 AATAGTAATCAGTAACAGT
**
82324089 AGCAGTAA-CAGTAACAGT
1 AATAGTAATCAGTAACAGT
82324107 AATAGTA
1 AATAGTA
82324114 TTTAACACAC
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.23
Consensus pattern (19 bp):
AATAGTAATCAGTAACAGT
Found at i:82324144 original size:45 final size:45
Alignment explanation
Indices: 82324094--82324197 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 45
82324084 ACGGTAGCAG
* *
82324094 TAACAGTAACAGTAATAGTATTTAACACACAAAGTG-CTGAATCTA
1 TAACAGTAACAGTAACAGTATTTAACACACAAAGTGTC-GAATCGA
** * *
82324139 TAACAGTAATGGTAACAGTATTTGACACACAAAGTGTCGAATCGG
1 TAACAGTAACAGTAACAGTATTTAACACACAAAGTGTCGAATCGA
*
82324184 TAATAGTAACAGTA
1 TAACAGTAACAGTA
82324198 GTCGGCACGT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 48 0.98
46 1 0.02
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.26
Consensus pattern (45 bp):
TAACAGTAACAGTAACAGTATTTAACACACAAAGTGTCGAATCGA
Found at i:82325198 original size:18 final size:19
Alignment explanation
Indices: 82325171--82325220 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
82325161 AAACTTCAAA
*
82325171 TCTTTACTTTTTCC-TTTT
1 TCTTTTCTTTTTCCTTTTT
*
82325189 TCTTTTC-TTTCCCTTTTT
1 TCTTTTCTTTTTCCTTTTT
82325207 TCTTTCTCTTTTTC
1 TCTTT-TCTTTTTC
82325221 TCCACTGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 5 0.19
18 15 0.58
19 2 0.08
20 4 0.15
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (19 bp):
TCTTTTCTTTTTCCTTTTT
Found at i:82325777 original size:20 final size:19
Alignment explanation
Indices: 82325750--82325791 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
82325740 ATATAAAACC
82325750 ATAACAATTA-ATAATTATA
1 ATAACAATTATAT-ATTATA
82325769 ATAATCAATTATATATTATA
1 ATAA-CAATTATATATTATA
82325789 ATA
1 ATA
82325792 TATATAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 15 0.71
21 2 0.10
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
ATAACAATTATATATTATA
Found at i:82334245 original size:2 final size:2
Alignment explanation
Indices: 82334238--82334270 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
82334228 GCATAAGATG
82334238 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82334271 GTGACTACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82338742 original size:49 final size:47
Alignment explanation
Indices: 82338612--82338956 Score: 519
Period size: 49 Copynumber: 7.1 Consensus size: 47
82338602 TTAATTCGTA
*
82338612 GTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
82338659 GTGAAGGTGTATATATATATGTGATAAGGCCTAATGGCCAATGTGATGAAT
1 GTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
82338710 GTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAAT
1 GTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
82338759 GTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
82338806 GTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
82338855 GTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
82338902 GTGAAGGTGTATATTTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATA--TATGTGATAAGGCCTAATGGCCGATGTGATGAAT
82338951 GTGAAA
1 GTGAAA
82338957 CATATGTGTG
Statistics
Matches: 273, Mismatches: 15, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
47 99 0.36
49 129 0.47
51 45 0.16
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:82338800 original size:96 final size:96
Alignment explanation
Indices: 82338621--82338956 Score: 555
Period size: 96 Copynumber: 3.5 Consensus size: 96
82338611 AGTGAAAGAG
* * *
82338621 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATATGTGATAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA--AG-A-GTATATATGTGATAA
*
82338686 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
62 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
82338721 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
*
82338786 TAATGGCCGATGTGATGAATGTGAAGGTGTA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
82338817 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
*
82338882 TAATGGCCGATGTGATGAATGTGAAGGTGTA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
82338913 TATTTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
82338957 CATATGTGTG
Statistics
Matches: 227, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
96 184 0.81
97 1 0.00
98 1 0.00
100 41 0.18
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:82338932 original size:145 final size:145
Alignment explanation
Indices: 82338612--82338955 Score: 602
Period size: 145 Copynumber: 2.4 Consensus size: 145
82338602 TTAATTCGTA
82338612 GTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATAT
1 GTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG-ATATATAT
*
82338677 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAA
65 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATA-ATGTGATAAGGCCTAA
82338742 TGGCCAATGTGATGAAT
129 TGGCCAATGTGATGAAT
82338759 GTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG-TATATATA
1 GTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGATATATATA
82338823 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT-ATGTGATAAGGCCTAATG
66 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATAATGTGATAAGGCCTAATG
*
82338887 GCCGATGTGATGAAT
131 GCCAATGTGATGAAT
* *
82338902 GTGAAGGTGTATATTTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 GTGAAAGAGTATA--TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
82338956 ACATATGTGT
Statistics
Matches: 191, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
143 43 0.23
145 92 0.48
147 56 0.29
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (145 bp):
GTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGATATATATA
TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATAATGTGATAAGGCCTAATG
GCCAATGTGATGAAT
Found at i:82339004 original size:48 final size:48
Alignment explanation
Indices: 82338948--82339147 Score: 346
Period size: 48 Copynumber: 4.2 Consensus size: 48
82338938 CGATGTGATG
*
82338948 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
82338996 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
82339044 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* * *
82339092 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGTT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
82339140 AATGTGAA
1 AATGTGAA
82339148 TGTTGTAACA
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 144 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:82339241 original size:37 final size:37
Alignment explanation
Indices: 82339195--82339314 Score: 222
Period size: 37 Copynumber: 3.2 Consensus size: 37
82339185 AATATGTTCT
*
82339195 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
82339232 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
82339269 GAGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
82339306 GGGTAAGAC
1 GGGTAAGAC
82339315 TTCGTAATAA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.23
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:82342854 original size:15 final size:16
Alignment explanation
Indices: 82342815--82342854 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
82342805 ATTGTTTTCT
82342815 TTTTCATTTAATTAAA
1 TTTTCATTTAATTAAA
* *
82342831 TTGTCATTTAA-TAAC
1 TTTTCATTTAATTAAA
82342846 TTTTCATTT
1 TTTTCATTT
82342855 TTCCAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.30, C:0.10, G:0.03, T:0.57
Consensus pattern (16 bp):
TTTTCATTTAATTAAA
Found at i:82353065 original size:40 final size:40
Alignment explanation
Indices: 82353021--82353152 Score: 194
Period size: 40 Copynumber: 3.3 Consensus size: 40
82353011 CTACTCGTTC
* * * *
82353021 AAACGCCTTCGGGACATAACCC-GGTTATAGCAACTCACAT
1 AAACGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCAT
82353061 AAACGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCAT
1 AAACGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCAT
*
82353101 AAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCAT
1 AAACGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCAT
*
82353141 AAATGCCTTCGG
1 AAACGCCTTCGG
82353153 ATCCTAGTCC
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
40 83 0.97
41 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (40 bp):
AAACGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCAT
Found at i:82354879 original size:29 final size:29
Alignment explanation
Indices: 82354817--82354919 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
82354807 GTGACGAGAT
* * *
82354817 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
82354846 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
82354875 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
82354904 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82354920 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:82362192 original size:67 final size:67
Alignment explanation
Indices: 82362119--82362254 Score: 245
Period size: 67 Copynumber: 2.0 Consensus size: 67
82362109 AAAATTTATT
* *
82362119 ACAAATTTCAAAATTACCAAGCCGTTATCTTCCACTAACATATTAATGGGCTATTTACCACATAA
1 ACAAATTTCAAAATTACCAAGCCATTATCTTCCACTAACATATTAATGGGATATTTACCACATAA
82362184 GG
66 GG
*
82362186 ACAAATTTTAAAATTACCAAGCCATTATCTTCCACTAACATATTAATGGGATATTTACCACATAA
1 ACAAATTTCAAAATTACCAAGCCATTATCTTCCACTAACATATTAATGGGATATTTACCACATAA
82362251 GG
66 GG
82362253 AC
1 AC
82362255 CTCCACTTTA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (67 bp):
ACAAATTTCAAAATTACCAAGCCATTATCTTCCACTAACATATTAATGGGATATTTACCACATAA
GG
Found at i:82363802 original size:37 final size:37
Alignment explanation
Indices: 82363739--82363847 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
82363729 GGCTCAGATG
* * *
82363739 AAATCTCCACACGAAGTTATCTGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
82363776 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
82363813 TAATCTCCACACGTAATCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
82363848 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:82364048 original size:48 final size:48
Alignment explanation
Indices: 82363989--82364117 Score: 204
Period size: 48 Copynumber: 2.7 Consensus size: 48
82363979 TATACACACG
* * * *
82363989 TCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGTA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
82364037 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* *
82364085 TCTCATATATATTTCACATTAGCTATTCGGCTT
1 TCTCATACATATTTCACATTAGCCATTCGGCTT
82364118 CACATTAGCC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.37
Consensus pattern (48 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
Found at i:82364121 original size:19 final size:19
Alignment explanation
Indices: 82364097--82364136 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
82364087 TCATATATAT
*
82364097 TTCACATTAGCTATTCGGC
1 TTCACATTAGCCATTCGGC
82364116 TTCACATTAGCCATTCGGC
1 TTCACATTAGCCATTCGGC
82364135 TT
1 TT
82364137 TACCACATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.38
Consensus pattern (19 bp):
TTCACATTAGCCATTCGGC
Found at i:82364157 original size:67 final size:67
Alignment explanation
Indices: 82364049--82364184 Score: 263
Period size: 67 Copynumber: 2.0 Consensus size: 67
82364039 TCATACATAT
*
82364049 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCTATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCTATTCG
82364114 GC
66 GC
82364116 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCTATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCTATTCG
82364181 GC
66 GC
82364183 TT
1 TT
82364185 TACCACATAT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.38
Consensus pattern (67 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCTATTCG
GC
Found at i:82364172 original size:48 final size:48
Alignment explanation
Indices: 82364116--82364602 Score: 466
Period size: 48 Copynumber: 9.8 Consensus size: 48
82364106 GCTATTCGGC
82364116 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* *
82364164 TTCACATTAGCTATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* * * * *
82364212 TTCACATTAGCCATTCGGCTTCACATTAGCCAT-TCAACTTTACCACATATACATAT
1 TTCACATTAGCCATTCGGCTTTAC--CA--CATAT--AC-ATATCTC--ATACATAT
* ** * * * ** * *
82364268 CTCATACATATTTCACATTAGCCATT-CGGC-TTTAC-CA-CAT-ATACATAT
1 TTC--ACAT-TAGC-CATTCGGCTTTACCACATATACATATC-TCATACATAT
* **
82364316 CTCATACATATTTCACATTGGCCATTTGGCTTTACCACATATACATATCTCATACATAT
1 TTC--ACAT-TAGC-CATT---C----GGCTTTACCACATATACATATCTCATACATAT
* *
82364375 TTCACATTGGCCATTCGGCTTTACC-CATATACCTATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
*
82364422 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* *
82364470 TTCACATTAGCCATTCGGCTTTACCGCATATACCTATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
82364518 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
*
82364566 TTCACATTAGCCATTCGGTTTTACCACATATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
82364603 ATTTATCTTG
Statistics
Matches: 371, Mismatches: 40, Indels: 56
0.79 0.09 0.12
Matches are distributed among these distances:
47 45 0.12
48 251 0.68
50 2 0.01
51 2 0.01
52 4 0.01
53 4 0.01
54 5 0.01
55 10 0.03
56 13 0.04
57 8 0.02
58 6 0.02
59 14 0.04
60 7 0.02
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
Found at i:82364183 original size:163 final size:162
Alignment explanation
Indices: 82363989--82364442 Score: 591
Period size: 163 Copynumber: 2.8 Consensus size: 162
82363979 TATACACACG
* * * *
82363989 TCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCATACATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
82364054 ATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCTATTCGGCTTC
66 ATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGC-ATTCGGCTTC
82364119 ACATTAGCCATTCGGCTTTACCACATATACATA
130 ACATTAGCCATTCGGCTTTACCACATATACATA
* *
82364152 TCTCATACATATTTCACATTAGCTATTCGGCTTTACCACATATACATATCTCATATATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
* * * * * * * *
82364217 ATTAGCCATTCGGCTTCACATTAGCCAT-TCAACTTTACCACATATACATATCTCA-TA-CATAT
66 ATTAGCCATTCGGCTTTAC--CA--CATAT--AC-ATATCTCATATATATTTCACATTAGCAT-T
82364279 ----TTCACATTAGCCATTCGGCTTTACCACATATACATA
123 CGGCTTCACATTAGCCATTCGGCTTTACCACATATACATA
* *
82364315 TCTCATACATATTTCACATTGGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
* * *
82364380 ATTGGCCATTCGGCTTTACC-CATATACCTATCTCATACATATTTCACATTAGCCATTCGGCTT
66 ATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAG-CATTCGGCTT
82364443 TACCACATAT
Statistics
Matches: 247, Mismatches: 28, Indels: 33
0.80 0.09 0.11
Matches are distributed among these distances:
156 14 0.06
157 4 0.02
158 4 0.02
159 4 0.02
162 2 0.01
163 191 0.77
165 1 0.00
166 3 0.01
167 5 0.02
168 4 0.02
169 15 0.06
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.36
Consensus pattern (162 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
ATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCATTCGGCTTCA
CATTAGCCATTCGGCTTTACCACATATACATA
Found at i:82364203 original size:115 final size:115
Alignment explanation
Indices: 82364001--82364347 Score: 604
Period size: 115 Copynumber: 3.0 Consensus size: 115
82363991 TCCTACATAT
* * *
82364001 TTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCATACATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
*
82364066 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCTATTCGGC
66 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGC
*
82364116 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCTATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
82364181 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGC
66 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGC
**
82364231 TTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
* * *
82364296 GCTTTACCACATATACATATCTCATACATATTTCACATTGGCCATTTGGC
66 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGC
82364346 TT
1 TT
82364348 TACCACATAT
Statistics
Matches: 221, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 221 1.00
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (115 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGC
Found at i:82364235 original size:67 final size:67
Alignment explanation
Indices: 82364164--82364299 Score: 236
Period size: 67 Copynumber: 2.0 Consensus size: 67
82364154 TCATACATAT
* ** *
82364164 TTCACATTAGCTATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
82364229 GC
66 GC
82364231 TTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
82364296 GC
66 GC
82364298 TT
1 TT
82364300 TACCACATAT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.37
Consensus pattern (67 bp):
TTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
GC
Found at i:82364373 original size:96 final size:96
Alignment explanation
Indices: 82364231--82364602 Score: 647
Period size: 96 Copynumber: 3.9 Consensus size: 96
82364221 GCCATTCGGC
**
82364231 TTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
82364296 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
* * *
82364327 TTCACATTGGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCACATTGGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
*
82364392 GCTTTACC-CATATACCTATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
*
82364422 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
* *
82364487 GCTTTACCGCATATACCTATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
82364518 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
*
82364583 GTTTTACCACATATACATAT
66 GCTTTACCACATATACATAT
82364603 ATTTATCTTG
Statistics
Matches: 261, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
95 90 0.34
96 171 0.66
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCTCATACATAT
Found at i:82364455 original size:191 final size:192
Alignment explanation
Indices: 82364231--82364598 Score: 648
Period size: 191 Copynumber: 1.9 Consensus size: 192
82364221 GCCATTCGGC
*
82364231 TTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATAGTTCACATTAGCCATTCG
* *
82364296 GCTTTACCACATATACATATCTCATACATATTTCACATTGGCCATTTGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA
*
82364361 TATCTCATACATATTTCACATTGGCCATTCGGCTTTACC-CATATACCTATCTCATACATAT
131 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACCTATCTCATACATAT
**
82364422 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATAGTTCACATTAGCCATTCG
* *
82364487 GCTTTACCGCATATACCTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA
*
82364552 TATCTCATACATATTTCACATTAGCCATTCGGTTTTACCACATATAC
131 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAC
82364599 ATATATTTAT
Statistics
Matches: 167, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
191 160 0.96
192 7 0.04
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (192 bp):
TTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATAGTTCACATTAGCCATTCG
GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA
TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACCTATCTCATACATAT
Found at i:82368011 original size:324 final size:320
Alignment explanation
Indices: 82367420--82368059 Score: 899
Period size: 324 Copynumber: 2.0 Consensus size: 320
82367410 GCCTTTAAAT
* * *
82367420 TCTAGAACACAACAACGAAGCATATCTTCGAGAATCTGTATAATTCTGTGCAAACGCGTTCCCAA
1 TCTAGAACACAACAACGAAGCATATATTCGAGAATCTGTATAATTCTGTGCAAACGCATACCCAA
*
82367485 ATCTTGCAATTTCTTCCAAAATTGTGACGTAAACCTCGAATCTCTATCGAAAATAATAGAAACTA
66 ATCTTGCAATTTCTTCCAAAATCGTGACGTAAACCTCGAATCTCTATCGAAAATAATAGAAACTA
* * * **
82367550 GTACCCCGCGCAATCTAACAATCTCAAAGATGTACAATTCTACTAATCTGTCGAGTGAAAAGTCT
131 GTACCCCGCGCAACCTAACAATCTCAAAGATGTACAATTCTAATAATCTATCGAGCAAAAAGTCT
** * **
82367615 GTACATCTCGAAATGAAATGTGCCAATTTCGTCAAATGATCAGCAACAATTCAAATAGCATCTTT
196 GTACATCTCGAAATGAAATGTGCCAATTTCGTCAAACAATCAACAACAACCCAAATAGCATCTTT
* *
82367680 ATTTTTCAGAGATAAGGGTAATCCTAATATGAAATCCATTGTAACTCTATCCCATTTCCAC
261 ATTTTTCAGAGACAAGGGTAAT-CTAATATGAAATCCATCGTAACTCTATCCCATTTCCAC
*
82367741 TCTAGAACACAACAATGAAGCATATATTCGAGAATCTGTATAATTCTGTGCAAACGCATACCCAA
1 TCTAGAACACAACAACGAAGCATATATTCGAGAATCTGTATAATTCTGTGCAAACGCATACCCAA
* * * *
82367806 ATCTTCTTGCAATTTCTTCCGACATCGTGACGTAAACCTTGGATCTCTATACG-AAATAATAGAA
66 A---TCTTGCAATTTCTTCCAAAATCGTGACGTAAACCTCGAATCTCTAT-CGAAAATAATAGAA
* *
82367870 ACTGGTACCCCGCGTAACCTAACAATCTCAAAGATGTACAATT-TAGATAATCTATCGAGCAAAA
127 ACTAGTACCCCGCGCAACCTAACAATCTCAAAGATGTACAATTCTA-ATAATCTATCGAGCAAAA
* * * * *
82367934 AGTCTGTACGTACT-GAAATGAAATGTGTCGATTTTGTCAAACAATCAACAACAACCCAGATAGC
191 AGTCTGTACAT-CTCGAAATGAAATGTGCCAATTTCGTCAAACAATCAACAACAACCCAAATAGC
* * * * *
82367998 ATCTTTCTTTTTCAGCGACAGGGGTAATCTGATATGAAATCCATCGTAACTCTATTCCATTT
255 ATCTTTATTTTTCAGAGACAAGGGTAATCTAATATGAAATCCATCGTAACTCTATCCCATTT
82368060 AACCTACTAA
Statistics
Matches: 280, Mismatches: 33, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
321 62 0.22
323 33 0.12
324 181 0.65
325 4 0.01
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (320 bp):
TCTAGAACACAACAACGAAGCATATATTCGAGAATCTGTATAATTCTGTGCAAACGCATACCCAA
ATCTTGCAATTTCTTCCAAAATCGTGACGTAAACCTCGAATCTCTATCGAAAATAATAGAAACTA
GTACCCCGCGCAACCTAACAATCTCAAAGATGTACAATTCTAATAATCTATCGAGCAAAAAGTCT
GTACATCTCGAAATGAAATGTGCCAATTTCGTCAAACAATCAACAACAACCCAAATAGCATCTTT
ATTTTTCAGAGACAAGGGTAATCTAATATGAAATCCATCGTAACTCTATCCCATTTCCAC
Found at i:82369142 original size:379 final size:379
Alignment explanation
Indices: 82368443--82369200 Score: 1453
Period size: 379 Copynumber: 2.0 Consensus size: 379
82368433 TATGTGTTAA
* *
82368443 GAACAAAAGTGATTAAAAGAAAATGTTTATTAAATGTTTTGAGTATGTGAAATTATAAATGAATT
1 GAACAAAAGTGATTAAAAGAAAATGTTTATTAAATGTTTTGAGGATGTGAAATTAGAAATGAATT
*
82368508 GACTATTTGTGATAGTATATGTTATATGCATTTATGTTCAAGTTAAATTTGAGGCTTTACTATCC
66 GACTAATTGTGATAGTATATGTTATATGCATTTATGTTCAAGTTAAATTTGAGGCTTTACTATCC
*
82368573 TCACCCCCTTATCAGTGAAATGTTCTAATGAAATTTGTAAGATTTAGGTTGAATAAGCTCATAGA
131 TCACCCCCTTATCAGTGAAATGTTCTAATAAAATTTGTAAGATTTAGGTTGAATAAGCTCATAGA
82368638 GTGTAGAGTTACAGAAGTCTGTGTTCAGAAGATTAATAATGTGATAAGAAAAGTGAATGAATCAG
196 GTGTAGAGTTACAGAAGTCTGTGTTCAGAAGATTAATAATGTGATAAGAAAAGTGAATGAATCAG
82368703 AAAATGAAGAAAATATTAAAAGAGATACTATAGATTTAAAGACTACAGATTATGGAAAGTCACTG
261 AAAATGAAGAAAATATTAAAAGAGATACTATAGATTTAAAGACTACAGATTATGGAAAGTCACTG
82368768 TTACAAAAGAAGTTAATTTTGATCAAATGACCTATTCAGGTATGTTATCTAAAG
326 TTACAAAAGAAGTTAATTTTGATCAAATGACCTATTCAGGTATGTTATCTAAAG
82368822 GAACAAAAGTGATTAAAAGAAAATGTTTATTAAATGTTTTGAGGATGTGAAATTAGAAATGAATT
1 GAACAAAAGTGATTAAAAGAAAATGTTTATTAAATGTTTTGAGGATGTGAAATTAGAAATGAATT
*
82368887 GACTAATTGTGATAGTATGTGTTATATGCATTTATGTTCAAGTTAAATTTGAGGCTTTACTATCC
66 GACTAATTGTGATAGTATATGTTATATGCATTTATGTTCAAGTTAAATTTGAGGCTTTACTATCC
82368952 TCACCCCCTTATCAGTGAAATGTTCTAATAAAATTTGTAAGATTTAGGTTGAATAAGCTCATAGA
131 TCACCCCCTTATCAGTGAAATGTTCTAATAAAATTTGTAAGATTTAGGTTGAATAAGCTCATAGA
82369017 GTGTAGAGTTACAGAAGTCTGTGTTCAGAAGATTAATAATGTGATAAGAAAAGTGAATGAATCAG
196 GTGTAGAGTTACAGAAGTCTGTGTTCAGAAGATTAATAATGTGATAAGAAAAGTGAATGAATCAG
* *
82369082 AAAATGAAGACAATATTAAAAGAGATACTATAGATTTAAAGACTATAGATTATGGAAAGTCACTG
261 AAAATGAAGAAAATATTAAAAGAGATACTATAGATTTAAAGACTACAGATTATGGAAAGTCACTG
82369147 TTACAAAAGAAGTTAATTTTGATCAAATGACCTATTCAGGTATGTTATCTAAAG
326 TTACAAAAGAAGTTAATTTTGATCAAATGACCTATTCAGGTATGTTATCTAAAG
82369201 AAAGTATTAA
Statistics
Matches: 372, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
379 372 1.00
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (379 bp):
GAACAAAAGTGATTAAAAGAAAATGTTTATTAAATGTTTTGAGGATGTGAAATTAGAAATGAATT
GACTAATTGTGATAGTATATGTTATATGCATTTATGTTCAAGTTAAATTTGAGGCTTTACTATCC
TCACCCCCTTATCAGTGAAATGTTCTAATAAAATTTGTAAGATTTAGGTTGAATAAGCTCATAGA
GTGTAGAGTTACAGAAGTCTGTGTTCAGAAGATTAATAATGTGATAAGAAAAGTGAATGAATCAG
AAAATGAAGAAAATATTAAAAGAGATACTATAGATTTAAAGACTACAGATTATGGAAAGTCACTG
TTACAAAAGAAGTTAATTTTGATCAAATGACCTATTCAGGTATGTTATCTAAAG
Found at i:82372840 original size:44 final size:44
Alignment explanation
Indices: 82372792--82372944 Score: 190
Period size: 43 Copynumber: 3.5 Consensus size: 44
82372782 TGTGCTTTCG
*
82372792 TGTAAGACCATGTCTGGGACGTTGGCATCGAT-TTATGATTTACG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATT-TGATTTACA
* *
82372836 TGTAAGACCATGTCTGGGACATCGGCATC-ATATTTGATTT-CA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTACA
* *
82372878 TGTAAGACCCTGTTTGGGACAG-TGGCATCGATATTTG-TTTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGATTTACA
* *
82372921 TGTAAGACCACGTCTAGGACGTTG
1 TGTAAGACCATGTCTGGGACGTTG
82372945 CCATTGTACG
Statistics
Matches: 93, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
42 29 0.31
43 35 0.38
44 29 0.31
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTACA
Found at i:82380654 original size:19 final size:19
Alignment explanation
Indices: 82380630--82380668 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
82380620 ATTGAAAAAG
82380630 ATACTGATCAAACTTTGAA
1 ATACTGATCAAACTTTGAA
82380649 ATACTGATCAAACTTTGAA
1 ATACTGATCAAACTTTGAA
82380668 A
1 A
82380669 GTGAGTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (19 bp):
ATACTGATCAAACTTTGAA
Done.