Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 265 of 433
Found at i:82383463 original size:41 final size:40
Alignment explanation
Indices: 82383289--82383471 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
82383279 AACCCAAGTA
* * * *
82383289 CCTTCGGGATTTA-ACCGGATATAGCAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82383328 CCTTTGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82383368 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82383408 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA-TG
**
82383449 CCTTCGGGTGTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
82383472 CATCCGAATA
Statistics
Matches: 130, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 10 0.08
40 97 0.75
41 23 0.18
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82388130 original size:121 final size:121
Alignment explanation
Indices: 82387916--82388165 Score: 428
Period size: 121 Copynumber: 2.1 Consensus size: 121
82387906 CAACCAGTTG
* *
82387916 CCCGTGTGACTAGCCCATGTACCCTTCGAAATGGCCACACACGCCCATGTGCTAAGCCGTGTGCT
1 CCCGTGTGACTAGCCCATGTACCCTTCGAAATGGCCACACACGCCCATGTGCCAAGCCATGTGCT
82387981 AGGGTGTGCCAAAAATATAGGGTATACTAACTTATGCCACACGGCCAAATCACACA
66 AGGGTGTGCCAAAAATATAGGGTATACTAACTTATGCCACACGGCCAAATCACACA
* *
82388037 CCCGTGTGACTAGCCCATGTACCCTTCGAAATGGCCACACACGCCCGTGTGCCAGGCCATGTGCT
1 CCCGTGTGACTAGCCCATGTACCCTTCGAAATGGCCACACACGCCCATGTGCCAAGCCATGTGCT
* * * *
82388102 AGGGTGTGGCAAAACTATAGGGTATACTAACTTATGCCACACGGCCAAGTCACACG
66 AGGGTGTGCCAAAAATATAGGGTATACTAACTTATGCCACACGGCCAAATCACACA
82388158 CCCGTGTG
1 CCCGTGTG
82388166 CTGAGCTGTG
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 121 1.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (121 bp):
CCCGTGTGACTAGCCCATGTACCCTTCGAAATGGCCACACACGCCCATGTGCCAAGCCATGTGCT
AGGGTGTGCCAAAAATATAGGGTATACTAACTTATGCCACACGGCCAAATCACACA
Found at i:82391484 original size:42 final size:42
Alignment explanation
Indices: 82391422--82391505 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
82391412 TGGTAAAAAG
82391422 ACGAGGTAAGTACTTCTGATTACTTAGTAAACGTTAGAATGA
1 ACGAGGTAAGTACTTCTGATTACTTAGTAAACGTTAGAATGA
*
82391464 ACGAGGTAAGTACTTTTGATTACTTAGTAAACGTTAGAATGA
1 ACGAGGTAAGTACTTCTGATTACTTAGTAAACGTTAGAATGA
82391506 GCATGAAACC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (42 bp):
ACGAGGTAAGTACTTCTGATTACTTAGTAAACGTTAGAATGA
Found at i:82396044 original size:68 final size:65
Alignment explanation
Indices: 82395830--82396082 Score: 219
Period size: 68 Copynumber: 3.8 Consensus size: 65
82395820 ATATAGTTCG
* * *
82395830 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCA-ATATA-TCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATTCTCGT
82395892 A
65 A
* * * * *
82395893 GCTCTCTTGTCTACATGGTGTCCTTAACTTGGAACCACGCATGCGACCTAGCTACATATA-TCCC
1 GCTCTCTTGTCTACATGGTGTAC---ACTTAGTACCACCCATGCGACCTAGCTACATATATTCTC
82395957 GTA
63 GTA
* * * *
82395960 GCTCTCTTGTCTACATGGAGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTT
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTC
82396025 GTA
63 GTA
* * * * * ** *
82396028 GCTCTCTTGTAC-ACATGATGTGCACTCAGCACTATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATA
82396083 CCATCTGTAT
Statistics
Matches: 152, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 26 0.17
65 2 0.01
66 24 0.16
67 33 0.22
68 46 0.30
69 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.30
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
Found at i:82396440 original size:18 final size:19
Alignment explanation
Indices: 82396417--82396475 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 19
82396407 AACTTGGCAC
*
82396417 CATAA-TCATTTAATTTAA
1 CATAATTCAATTAATTTAA
82396435 CATAATTCAATTAATTTACTA
1 CATAATTCAATTAATTTA--A
*
82396456 AATTTAATTCAATTAATTTA
1 CA--TAATTCAATTAATTTA
82396476 CTAAATTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 5 0.15
19 11 0.32
21 2 0.06
23 16 0.47
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (19 bp):
CATAATTCAATTAATTTAA
Found at i:82396464 original size:23 final size:23
Alignment explanation
Indices: 82396437--82396485 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
82396427 TAATTTAACA
82396437 TAATTCAATTAATTTACTAAATT
1 TAATTCAATTAATTTACTAAATT
82396460 TAATTCAATTAATTTACTAAATT
1 TAATTCAATTAATTTACTAAATT
82396483 TAA
1 TAA
82396486 CTTTCCAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (23 bp):
TAATTCAATTAATTTACTAAATT
Found at i:82396804 original size:30 final size:30
Alignment explanation
Indices: 82396770--82396830 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
82396760 TCCTTAACTC
82396770 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
82396800 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
82396830 A
1 A
82396831 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:82410496 original size:40 final size:40
Alignment explanation
Indices: 82410388--82410597 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
82410378 CGGGATTTAA
* * * * *
82410388 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
82410428 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82410468 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82410508 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82410548 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82410588 CCGGATATAT
1 CCGGATATAT
82410598 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:82421597 original size:29 final size:28
Alignment explanation
Indices: 82421563--82421665 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
82421553 TACTCAATCA
*
82421563 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
82421592 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
82421621 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
82421650 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
82421666 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:82427375 original size:43 final size:43
Alignment explanation
Indices: 82427309--82427392 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
82427299 AGCTCGTACA
* *
82427309 ATGCCAACGTCCCAGACATGGTCTTACATGTAA-TCAAATATCT
1 ATGCCAACGTCCCAGACAGGGTCTCACATG-AATTCAAATATCT
*
82427352 ATGCC-ACTGTCCTAGACAGGGTCTCACATGAATTCAAATAT
1 ATGCCAAC-GTCCCAGACAGGGTCTCACATGAATTCAAATAT
82427393 GATGTCGATG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 4 0.11
43 32 0.89
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTCACATGAATTCAAATATCT
Found at i:82436361 original size:30 final size:29
Alignment explanation
Indices: 82436322--82436378 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
82436312 AATTTGATTT
*
82436322 TCAAACCTAGGGGTAAAATGGTCATTTTG
1 TCAAACCTAGGGGCAAAATGGTCATTTTG
82436351 TCAAAGCCTAGGGGCAAAATGGTCATTT
1 TCAAA-CCTAGGGGCAAAATGGTCATTT
82436379 CACCAAAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (29 bp):
TCAAACCTAGGGGCAAAATGGTCATTTTG
Found at i:82436386 original size:30 final size:30
Alignment explanation
Indices: 82436323--82436386 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
82436313 ATTTGATTTT
* ***
82436323 CAAA-CCTAGGGGTAAAATGGTCATTTTGT
1 CAAAGCCTAGGGGCAAAATGGTCATTTCAC
82436352 CAAAGCCTAGGGGCAAAATGGTCATTTCAC
1 CAAAGCCTAGGGGCAAAATGGTCATTTCAC
82436382 CAAAG
1 CAAAG
82436387 AAGTGAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 4 0.13
30 26 0.87
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (30 bp):
CAAAGCCTAGGGGCAAAATGGTCATTTCAC
Found at i:82439275 original size:41 final size:41
Alignment explanation
Indices: 82439146--82439329 Score: 165
Period size: 42 Copynumber: 4.5 Consensus size: 41
82439136 ATACTCGATA
* * * * * * *
82439146 TCTCACACACTAAGTGCCAAAGCATAGTCAAAGCTATTATAA
1 TCTCGCACACTAAGTGCCATATCATAGCCGAAGCTATT-CAG
* * * * * *
82439188 TATTGCACACTAAGTGCCAAAGCATAGCCGAAGCTATTATAA
1 TCTCGCACACTAAGTGCCATATCATAGCCGAAGCTATT-CAG
*
82439230 TCTCGCACACTAAGTGCC-TTTCATAGCCGAAGCTATCTCAG
1 TCTCGCACACTAAGTGCCATATCATAGCCGAAGCTAT-TCAG
*
82439271 TCTCGCACACTAAGTGCCATAT-ATAGCCGAAGCTATTCTG
1 TCTCGCACACTAAGTGCCATATCATAGCCGAAGCTATTCAG
* **
82439311 ACTTACACACTAAGTGCCA
1 TCTCGCACACTAAGTGCCA
82439330 AACATAGTCG
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
40 19 0.15
41 48 0.39
42 56 0.46
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (41 bp):
TCTCGCACACTAAGTGCCATATCATAGCCGAAGCTATTCAG
Found at i:82440821 original size:34 final size:34
Alignment explanation
Indices: 82440769--82440840 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
82440759 AGCAACAGTC
*
82440769 CAGTATCAGTGTAAGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTAAGCCTTAACCCATTACAGTAA
** ** *
82440803 CAGTATCAGTGTGGGCCTTAACCTGTTACTGTAA
1 CAGTATCAGTGTAAGCCTTAACCCATTACAGTAA
82440837 CAGT
1 CAGT
82440841 GATAAATATG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (34 bp):
CAGTATCAGTGTAAGCCTTAACCCATTACAGTAA
Found at i:82451180 original size:6 final size:6
Alignment explanation
Indices: 82451169--82451243 Score: 59
Period size: 6 Copynumber: 12.7 Consensus size: 6
82451159 AATCCTCCTA
*
82451169 TTTTAT TTTTA- -TTTAT TCTTAT TTTTAT TTTCT-T TTATT-T CTTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT TT-TTAT -TTTTAT
* * *
82451216 TCTTAT TTTTCT TTTGAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
82451244 CAATTTTCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
4 4 0.07
6 46 0.84
7 5 0.09
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:82451218 original size:31 final size:32
Alignment explanation
Indices: 82451169--82451230 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
82451159 AATCCTCCTA
*
82451169 TTTTATTTTTATTTATTCTTATTTTTATTTTC
1 TTTTATTTCTATTTATTCTTATTTTTATTTTC
*
82451201 TTTTATTTCT-TTTATTCTTATTTTTCTTTT
1 TTTTATTTCTATTTATTCTTATTTTTATTTT
82451231 GATTTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 19 0.68
32 9 0.32
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (32 bp):
TTTTATTTCTATTTATTCTTATTTTTATTTTC
Found at i:82451241 original size:18 final size:17
Alignment explanation
Indices: 82451167--82451258 Score: 79
Period size: 16 Copynumber: 5.7 Consensus size: 17
82451157 TGAATCCTCC
*
82451167 TATT-TTATTTTT-ATT
1 TATTCTTATTTTTCTTT
*
82451182 TATTCTTATTTTTATTT
1 TATTCTTATTTTTCTTT
*
82451199 TCTT-TTA--TTTCTTT
1 TATTCTTATTTTTCTTT
82451213 TATTCTTATTTTTCTTT
1 TATTCTTATTTTTCTTT
* **
82451230 TGATTTTTATTTTTCAAT
1 T-ATTCTTATTTTTCTTT
82451248 T-TTCTTATTTT
1 TATTCTTATTTT
82451259 GAAAGACATA
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
14 9 0.14
15 7 0.11
16 20 0.32
17 13 0.21
18 14 0.22
ACGTcount: A:0.15, C:0.08, G:0.01, T:0.76
Consensus pattern (17 bp):
TATTCTTATTTTTCTTT
Found at i:82464062 original size:18 final size:18
Alignment explanation
Indices: 82464039--82464075 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
82464029 TGTAAGAAAA
82464039 TATTATTAAATGTTTTTT
1 TATTATTAAATGTTTTTT
**
82464057 TATTATTTTATGTTTTTT
1 TATTATTAAATGTTTTTT
82464075 T
1 T
82464076 TAAATTAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (18 bp):
TATTATTAAATGTTTTTT
Found at i:82465601 original size:22 final size:22
Alignment explanation
Indices: 82465573--82465617 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
82465563 ATAACCAGTA
*
82465573 CTTAGTTCTCTTTTATCTAAAT
1 CTTAGTTCTCTTTTATCCAAAT
82465595 CTTAGTTCTCTTTTATCCAAAT
1 CTTAGTTCTCTTTTATCCAAAT
82465617 C
1 C
82465618 ACAAATATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.04, T:0.51
Consensus pattern (22 bp):
CTTAGTTCTCTTTTATCCAAAT
Found at i:82468601 original size:24 final size:26
Alignment explanation
Indices: 82468564--82468613 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
82468554 TATGAACGAT
82468564 TGTTATATTCATGTTATTCA-AATGTA
1 TGTTATATTCATG-TATTCATAATGTA
82468590 TGTT-TATT-ATGTATTCATAATGTA
1 TGTTATATTCATGTATTCATAATGTA
82468614 ATTGAATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 6 0.26
24 9 0.39
25 4 0.17
26 4 0.17
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.52
Consensus pattern (26 bp):
TGTTATATTCATGTATTCATAATGTA
Found at i:82469099 original size:34 final size:34
Alignment explanation
Indices: 82469060--82469129 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
82469050 TTACACCATG
82469060 TATAAATGCACTAACTTGTGTATTTGATGTTGTA
1 TATAAATGCACTAACTTGTGTATTTGATGTTGTA
82469094 TATAAATGCACTAACTTGTGTATTTGATGTTGTA
1 TATAAATGCACTAACTTGTGTATTTGATGTTGTA
82469128 TA
1 TA
82469130 GGCATTATGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.44
Consensus pattern (34 bp):
TATAAATGCACTAACTTGTGTATTTGATGTTGTA
Found at i:82477525 original size:40 final size:40
Alignment explanation
Indices: 82477466--82477673 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
82477456 CATTGGAATG
* * *
82477466 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
82477506 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
82477546 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
82477586 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
82477626 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
82477666 ATATCCGG
1 ATATCCGG
82477674 TTAAATTCTG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:82481838 original size:37 final size:37
Alignment explanation
Indices: 82481788--82481861 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
82481778 GGATAACTAA
*
82481788 GTTAGTTTATTTTAAGCTTTCGCTATAGTATTCATGC
1 GTTAGTTTATTTTAAGCTTTCGCTATAGTATCCATGC
*
82481825 GTTAGTTTATTTTAAGCTTTCGTTATAGTATCCATGC
1 GTTAGTTTATTTTAAGCTTTCGCTATAGTATCCATGC
82481862 ATTGCATGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.49
Consensus pattern (37 bp):
GTTAGTTTATTTTAAGCTTTCGCTATAGTATCCATGC
Found at i:82484085 original size:27 final size:27
Alignment explanation
Indices: 82484047--82484169 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
82484037 ACACTCTAGA
* *
82484047 AAATGGAA-CCTTTGTGGAAATTTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
*
82484073 AAATGGAAGCCTTTTTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* **
82484100 AAATGGGAGTTTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
*
82484127 AGATGGAAGCCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* *
82484154 AGATAGAAGCCTTTGT
1 AAATGGAAGCCTTTGT
82484170 AGTGATTTAA
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 8 0.10
27 76 0.90
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.33
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGCAATCTATG
Found at i:82489105 original size:20 final size:20
Alignment explanation
Indices: 82489082--82489122 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
82489072 AAATTAGGAA
82489082 AACTTTATTTCTATTAATTT
1 AACTTTATTTCTATTAATTT
82489102 AACTTTATTTCTATTAATTT
1 AACTTTATTTCTATTAATTT
82489122 A
1 A
82489123 GTCATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (20 bp):
AACTTTATTTCTATTAATTT
Found at i:82492099 original size:50 final size:51
Alignment explanation
Indices: 82491995--82492179 Score: 192
Period size: 50 Copynumber: 3.6 Consensus size: 51
82491985 TGAGAACACA
* * ***
82491995 TGTGTAGTACTATGTGCAAGCTACTATATGTTTAAAATGGCTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATATGTACCAAATGGC-TTAGGTCACG
* * *
82492047 TGTGTAGTACTAAGTACAGGCTACTATGTGTACCAAATGG-TTAGGTCGCG
1 TGTGTAGTACTAAGTGCAGGCTACTATATGTACCAAATGGCTTAGGTCACG
* ** * * * *
82492097 TGTGTAGTACTAAGTGCAGGCTACTATTTGTACCTGATAGCTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATATGTACCAAATGGCTTAGGTCACG
* * *
82492148 TGTGTGGTACTAAGTGCAGGCCACTATGTGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATATGTA
82492180 AAAGATAGCT
Statistics
Matches: 112, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
50 44 0.39
51 35 0.31
52 33 0.29
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATATGTACCAAATGGCTTAGGTCACG
Found at i:82492165 original size:51 final size:51
Alignment explanation
Indices: 82491991--82492228 Score: 199
Period size: 51 Copynumber: 4.7 Consensus size: 51
82491981 GTTGTGAGAA
* * * *** * *
82491991 CACATGTGTAGTACTATGTGCAAGCTACTATATGTTTAAAATGGCTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGC-TTAGGT
* * * *
82492043 CACGTGTGTAGTACTAAGTACAGGCTACTATGTGTACCAAAT-GGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTAGGT
* * * * * *
82492093 CGCGTGTGTAGTACTAAGTGCAGGCTACTATTTGTACCTGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTAGGT
* * ** *
82492144 CACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTAGGT
* * * * * *
82492195 CACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG
82492229 AAGAAGGTAG
Statistics
Matches: 154, Mismatches: 31, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
50 43 0.28
51 77 0.50
52 34 0.22
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTAGGT
Found at i:82492240 original size:51 final size:51
Alignment explanation
Indices: 82492132--82492264 Score: 153
Period size: 51 Copynumber: 2.6 Consensus size: 51
82492122 ATTTGTACCT
* * * * *
82492132 GATAGCTTCGATCACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAA
1 GATAGCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTATGTGTAAAA
*
82492183 GATAGCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAA
1 GATAGCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTATGTGTAA-AA
* * *
82492234 GGTAGCTTT-GACTACAAGGGTGGTACTATGT
1 GATAGCTTTGGTC-ACAAGTGTGGTACTATGT
82492265 ACGGGCCACC
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
50 4 0.06
51 67 0.94
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (51 bp):
GATAGCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTATGTGTAAAA
Found at i:82508063 original size:19 final size:19
Alignment explanation
Indices: 82508041--82508091 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
82508031 CTTTTGTGGA
*
82508041 AAAAAATTATTTTTAAAAT
1 AAAAAATTATTTCTAAAAT
* *
82508060 AAAAAATAATTTCTACAAT
1 AAAAAATTATTTCTAAAAT
82508079 AGAAATAATTATT
1 A-AAA-AATTATT
82508092 ATAACAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 17 0.65
20 3 0.12
21 6 0.23
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAAAATTATTTCTAAAAT
Found at i:82508114 original size:16 final size:17
Alignment explanation
Indices: 82508084--82508116 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
82508074 ACAATAGAAA
82508084 TAATTATTATAACAATT
1 TAATTATTATAACAATT
*
82508101 TAATT-TTATCACAATT
1 TAATTATTATAACAATT
82508117 GCTTATGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATTATTATAACAATT
Found at i:82509560 original size:21 final size:22
Alignment explanation
Indices: 82509534--82509574 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
82509524 ATTAGAATGG
* *
82509534 AAAACATAGT-ATAGTTAATTC
1 AAAACAAAGTAATAGATAATTC
82509555 AAAACAAAGTAATAGATAAT
1 AAAACAAAGTAATAGATAAT
82509575 GATGAATAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.56, C:0.07, G:0.10, T:0.27
Consensus pattern (22 bp):
AAAACAAAGTAATAGATAATTC
Found at i:82509762 original size:18 final size:17
Alignment explanation
Indices: 82509739--82509778 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
82509729 TCATTTAACA
82509739 TTAATATAAATATAATAT
1 TTAATATAAATATAAT-T
*
82509757 TTAATATAAATATGATT
1 TTAATATAAATATAATT
82509774 TTAAT
1 TTAAT
82509779 TATTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
TTAATATAAATATAATT
Found at i:82512065 original size:2 final size:2
Alignment explanation
Indices: 82512058--82512092 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
82512048 GTATACATAC
82512058 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82512093 AGCTTACAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82521273 original size:29 final size:29
Alignment explanation
Indices: 82521234--82521312 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
82521224 CTTAATAATC
*
82521234 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
82521264 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
82521293 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
82521313 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:82521973 original size:12 final size:12
Alignment explanation
Indices: 82521958--82521993 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
82521948 CGAATATGTA
82521958 TATCTATATATC
1 TATCTATATATC
*
82521970 TATCTATATATA
1 TATCTATATATC
*
82521982 TATATATATATC
1 TATCTATATATC
82521994 AACTATACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (12 bp):
TATCTATATATC
Found at i:82538854 original size:17 final size:19
Alignment explanation
Indices: 82538818--82538863 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
82538808 TGATTTTATT
*
82538818 AATCATAATATAATATATA
1 AATCATAATATAAAATATA
82538837 AATCAT-AT-TAAAATATA
1 AATCATAATATAAAATATA
82538854 AATCAATAAT
1 AATC-ATAAT
82538864 GAACCTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 12 0.50
18 4 0.17
19 8 0.33
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
AATCATAATATAAAATATA
Found at i:82539448 original size:2 final size:2
Alignment explanation
Indices: 82539441--82539473 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
82539431 TTTCATCCAC
*
82539441 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82539474 ATCATCAACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82541790 original size:16 final size:16
Alignment explanation
Indices: 82541766--82541796 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82541756 GTTATAATAT
*
82541766 ATTTTATTAACTTATA
1 ATTTAATTAACTTATA
82541782 ATTTAATTAACTTAT
1 ATTTAATTAACTTAT
82541797 TTAACCATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTAATTAACTTATA
Found at i:82547073 original size:17 final size:19
Alignment explanation
Indices: 82547037--82547082 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
82547027 TGATTTTATT
*
82547037 AATCATAATATAATATATA
1 AATCATAATATAAAATATA
82547056 AATCAT-AT-TAAAATATA
1 AATCATAATATAAAATATA
82547073 AATCAATAAT
1 AATC-ATAAT
82547083 GAGCCTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 12 0.50
18 4 0.17
19 8 0.33
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
AATCATAATATAAAATATA
Found at i:82549691 original size:29 final size:30
Alignment explanation
Indices: 82549632--82549691 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 30
82549622 TTTTCCCACT
82549632 CTCAAATTAATTTATTTCACATTTTAGTCC
1 CTCAAATTAATTTATTTCACATTTTAGTCC
82549662 CTCAAATTATTATTT-TTTCA-A-TTTAGTCC
1 CTCAAATTA--ATTTATTTCACATTTTAGTCC
82549691 C
1 C
82549692 AATAAGTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
29 9 0.32
30 10 0.36
31 5 0.18
32 4 0.14
ACGTcount: A:0.28, C:0.20, G:0.03, T:0.48
Consensus pattern (30 bp):
CTCAAATTAATTTATTTCACATTTTAGTCC
Found at i:82551648 original size:20 final size:20
Alignment explanation
Indices: 82551623--82551660 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
82551613 ATGATATACC
*
82551623 ACATTTAACCATCACATGAA
1 ACATTTAACCATAACATGAA
*
82551643 ACATTTAAGCATAACATG
1 ACATTTAACCATAACATG
82551661 CACAATTGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.26
Consensus pattern (20 bp):
ACATTTAACCATAACATGAA
Found at i:82558643 original size:37 final size:37
Alignment explanation
Indices: 82558580--82558651 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
82558570 AGCTCAGGCG
* *
82558580 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACA
*
82558617 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCAGGTCTTACCCGGA
82558652 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACA
Found at i:82558910 original size:47 final size:47
Alignment explanation
Indices: 82558858--82559051 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
82558848 CATACATATT
* * * * *
82558858 TCACATTAGCCATTCGACTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
82558905 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82558952 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
82558999 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82559046 TCACAT
1 TCACAT
82559052 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:82558930 original size:22 final size:22
Alignment explanation
Indices: 82558904--82559022 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
82558894 GTTCATATTC
82558904 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
82558926 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
82558950 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
82558973 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
82558997 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82559020 ATC
1 ATC
82559023 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82562632 original size:40 final size:40
Alignment explanation
Indices: 82562577--82562762 Score: 284
Period size: 40 Copynumber: 4.7 Consensus size: 40
82562567 GATGATAACG
* * * * *
82562577 GGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCT
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
82562617 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
82562657 GGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
82562697 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
82562737 GGGCTAAGTCCCGAAGGCATTTGTGC
1 GGGTTAAGTCCCGAAGGCATTTGTGC
82562763 TAGTGACCAT
Statistics
Matches: 137, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 135 0.99
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:82562710 original size:80 final size:80
Alignment explanation
Indices: 82562577--82562784 Score: 312
Period size: 80 Copynumber: 2.6 Consensus size: 80
82562567 GATGATAACG
* * * *
82562577 GGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCTGGGTTAAGTCCCGAAGGCATTTGTG
1 GGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
82562642 CGAGTTACTA-ATTCC
66 CGAGTTACTATA-TCC
* *
82562657 GGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
82562722 CGAGTTACTATATCC
66 CGAGTTACTATATCC
* *
82562737 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGCTAAG
1 GGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAG
82562785 GCCTGATGGC
Statistics
Matches: 116, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 2 0.02
80 113 0.97
81 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (80 bp):
GGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTATATCC
Found at i:82562775 original size:40 final size:40
Alignment explanation
Indices: 82562581--82562784 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
82562571 ATAACGGGGT
* * * * * *
82562581 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCTGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
82562621 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
82562661 TAAGTCCCGAAGGCATTTGTGCAAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
82562701 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
82562741 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
82562781 TAAG
1 TAAG
82562785 GCCTGATGGC
Statistics
Matches: 152, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 150 0.99
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:82570887 original size:40 final size:40
Alignment explanation
Indices: 82570827--82571051 Score: 310
Period size: 40 Copynumber: 5.6 Consensus size: 40
82570817 ATAATAACGG
* * * * *
82570827 GGTTAAGTCCCAAAGACATTTGTGCTAGTGATTAATTCCA
1 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCA
* *
82570867 GGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAATT-AA
1 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCA
82570906 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCA
1 -GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCA
* *
82570947 GGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAATTCCG
1 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCA
* *
82570987 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC-GATATCCA
1 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCA
*
82571027 GGCTAAGTCCCGAAGGCATTTGTGC
1 GGTTAAGTCCCGAAGGCATTTGTGC
82571052 TAGTGACCAT
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.02
40 163 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (40 bp):
GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCA
Found at i:82571071 original size:80 final size:80
Alignment explanation
Indices: 82570830--82571087 Score: 270
Period size: 80 Copynumber: 3.2 Consensus size: 80
82570820 ATAACGGGGT
* * * * ** * * *
82570830 TAAGTCCCAAAGACATTTGTGCTAGTGATTAATTCCAGGTTAAGTCCCGAAGGCATTTATGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACGAATTCCAGGCTAAGTCCCAAAGGCATTTGTGCGAG
* * ** *
82570895 TTACTAATTAAGGGT
66 TGACCAATTCCGGGC
* *
82570910 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCAGGTTAAGTCCCAAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACGAATTCCAGGCTAAGTCCCAAAGGCATTTGTGCGAG
* *
82570975 TTACTAATTCCGGGC
66 TGACCAATTCCGGGC
* *
82570990 TAAGTCCCGAAGGCATTTGTGCGAGTTACG-ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACGAAT-TCCAGGCTAAGTCCCAAAGGCATTTGTGCGA
*
82571054 GTGACC-ATATCCTGGC
65 GTGACCAAT-TCCGGGC
* *
82571070 TAAGGCCCGATGGC-TTTG
1 TAAGTCCCGAAGGCATTTG
82571088 CGAGTGGTTA
Statistics
Matches: 157, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
79 8 0.05
80 149 0.95
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACGAATTCCAGGCTAAGTCCCAAAGGCATTTGTGCGAG
TGACCAATTCCGGGC
Found at i:82572790 original size:25 final size:25
Alignment explanation
Indices: 82572762--82572871 Score: 114
Period size: 26 Copynumber: 4.3 Consensus size: 25
82572752 CTAGAGGCCT
*
82572762 AGCCTCTTTAAAT-AACTGGGGCAAA
1 AGCC-CTTTAAATAAACTGGGGCATA
***
82572787 AGCCCTTTTGGTAAACTGGGGCATA
1 AGCCCTTTAAATAAACTGGGGCATA
*
82572812 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCC-TTTAAATAAACTGGGGCATA
** *
82572838 AGCCCTTTTCGATAAACTAGGGCATA
1 AGCCC-TTTAAATAAACTGGGGCATA
82572864 AGCCCTTT
1 AGCCCTTT
82572872 TGCACTTCCT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
24 5 0.07
25 23 0.31
26 46 0.62
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AGCCCTTTAAATAAACTGGGGCATA
Found at i:82572834 original size:26 final size:26
Alignment explanation
Indices: 82572775--82572872 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
82572765 CTCTTTAAAT
* *
82572775 AACTGGGGCAAAAGCCCTTTT-GGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
82572800 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
82572826 AACTGGGGCATAAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
82572852 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
82572873 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 20 0.30
26 47 0.70
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:82572947 original size:20 final size:20
Alignment explanation
Indices: 82572922--82573018 Score: 167
Period size: 20 Copynumber: 4.8 Consensus size: 20
82572912 TTATGAATAC
82572922 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
82572942 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
*
82572962 AACATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
82572982 ATCATGTGCATACCATACAT
1 ATCATGTGCATATCATACAT
82573002 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
82573019 TCAATATTGT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 71 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:82581837 original size:29 final size:29
Alignment explanation
Indices: 82581798--82581872 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
82581788 GGTTGAGAGA
* *
82581798 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
82581827 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
82581856 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
82581873 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:82585566 original size:15 final size:16
Alignment explanation
Indices: 82585546--82585604 Score: 70
Period size: 15 Copynumber: 3.9 Consensus size: 16
82585536 TAACAAGGAA
82585546 AAAGAAATCCAAG-AT
1 AAAGAAATCCAAGAAT
* *
82585561 AGAGAAAT-CTAGAAT
1 AAAGAAATCCAAGAAT
82585576 AAAGAAATCC-AGAAT
1 AAAGAAATCCAAGAAT
*
82585591 AAAGAAACCCAAGA
1 AAAGAAATCCAAGA
82585605 TACGATACTA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 3 0.08
15 30 0.81
16 4 0.11
ACGTcount: A:0.59, C:0.14, G:0.15, T:0.12
Consensus pattern (16 bp):
AAAGAAATCCAAGAAT
Found at i:82588662 original size:93 final size:93
Alignment explanation
Indices: 82588555--82588725 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82588545 CGCCCTAAGT
* *
82588555 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82588620 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
82588648 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82588713 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82588726 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:82588722 original size:46 final size:46
Alignment explanation
Indices: 82588550--82588722 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
82588540 TAACCCGCCC
* * *
82588550 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
82588596 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
82588644 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
82588689 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82588723 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:82591055 original size:26 final size:26
Alignment explanation
Indices: 82590989--82591099 Score: 129
Period size: 26 Copynumber: 4.3 Consensus size: 26
82590979 CTGGAGGCCT
*
82590989 AGCCTCTTTT-AAT-AACTGGGGCAAA
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
82591014 AGCCC-TTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
82591039 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* ** *
82591065 AGCCCTTTCCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
82591091 AGCCCTTTT
1 AGCCCTTTT
82591100 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
23 3 0.04
24 2 0.03
25 20 0.27
26 48 0.66
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:82591094 original size:52 final size:49
Alignment explanation
Indices: 82590989--82591099 Score: 168
Period size: 52 Copynumber: 2.2 Consensus size: 49
82590979 CTGGAGGCCT
*
82590989 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCGGTAAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCGGTAAACTAGGGCATA
*
82591039 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTCCGGTAAACTAGGGCATA
1 AGCCCTTTT-AAT-AACTGGGGCAAAAGCCCTTT-CGGTAAACTAGGGCATA
82591091 AGCCCTTTT
1 AGCCCTTTT
82591100 GCACTTCCTC
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
49 5 0.09
50 7 0.12
51 19 0.34
52 25 0.45
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (49 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCGGTAAACTAGGGCATA
Found at i:82591171 original size:20 final size:20
Alignment explanation
Indices: 82591148--82591244 Score: 167
Period size: 20 Copynumber: 4.8 Consensus size: 20
82591138 TTTATGAAAC
82591148 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
**
82591168 ATCATGTGCATATTGTACAT
1 ATCATGTGCATATCATACAT
82591188 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
82591208 ATCATGTGCATACCATACAT
1 ATCATGTGCATATCATACAT
82591228 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
82591245 TCAATATTGT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 71 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:82591178 original size:40 final size:40
Alignment explanation
Indices: 82591134--82591244 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 40
82591124 CCCAACCAAA
* * *
82591134 TGCATTTATGAAACATCATGTGCATATCATACATATCATG
1 TGCATATATGACATATCATGTGCATATCATACATATCATG
82591174 TGCATAT-TGTACATATCATGTGCATATCATACATATCATG
1 TGCATATATG-ACATATCATGTGCATATCATACATATCATG
*
82591214 TGCATACCAT-ACATATCATGTGCATATCATA
1 TGCATA-TATGACATATCATGTGCATATCATA
82591245 TCAATATTGT
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
39 2 0.03
40 61 0.95
42 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (40 bp):
TGCATATATGACATATCATGTGCATATCATACATATCATG
Found at i:82591319 original size:25 final size:25
Alignment explanation
Indices: 82591291--82591338 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82591281 ATAAATAAAC
* * *
82591291 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
82591316 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
82591339 CATACTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:82593118 original size:2 final size:2
Alignment explanation
Indices: 82593108--82593145 Score: 67
Period size: 2 Copynumber: 18.5 Consensus size: 2
82593098 TATATGTTAA
82593108 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82593146 AGCTCATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 33 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:82614072 original size:20 final size:21
Alignment explanation
Indices: 82614049--82614090 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
82614039 ATAACATGTG
*
82614049 TTTTG-ATGTTTGATGATAAA
1 TTTTGAATGCTTGATGATAAA
*
82614069 TTTTGAATGCTTGTTGATAAA
1 TTTTGAATGCTTGATGATAAA
82614090 T
1 T
82614091 ATACAAGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.50
Consensus pattern (21 bp):
TTTTGAATGCTTGATGATAAA
Found at i:82614560 original size:29 final size:31
Alignment explanation
Indices: 82614511--82614569 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
82614501 AATGTGTATC
* *
82614511 TATTTATCTGATGGATGAAAT-T-GAGATAG
1 TATTTATCTAATAGATGAAATGTGGAGATAG
82614540 TATTTATTCTAATAGAT-AAATGTGGAGATA
1 TATTTA-TCTAATAGATGAAATGTGGAGATA
82614570 TTAAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 10 0.40
30 9 0.36
31 6 0.24
ACGTcount: A:0.37, C:0.03, G:0.20, T:0.39
Consensus pattern (31 bp):
TATTTATCTAATAGATGAAATGTGGAGATAG
Found at i:82620553 original size:28 final size:28
Alignment explanation
Indices: 82620513--82620610 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
82620503 GTAATAAGCC
82620513 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATA-TCGAACT
* *
82620541 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACAT-ATCGAACT
* * *
82620569 TGCACACTTAGTGCTATACAT-TTGAACC
1 CGCACACTTAGTGCT-TACATATCGAACT
82620597 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82620611 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
27 2 0.03
28 52 0.88
29 1 0.02
30 4 0.07
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTACATATCGAACT
Found at i:82626292 original size:40 final size:40
Alignment explanation
Indices: 82626207--82626386 Score: 170
Period size: 40 Copynumber: 4.5 Consensus size: 40
82626197 GCTCGATTGT
* * *
82626207 CTTCGGGACA-TAGCCCGG-TTATAGTGATTC-CACAATTGC
1 CTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCACAAATGC
*
82626246 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCATAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * * *
82626286 CTTCGGGACTTAACCCGGTTTTGGTGACTCACACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
82626326 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
82626367 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGAATTAGCCCGGAT
82626387 ATCATTCGAA
Statistics
Matches: 115, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 23 0.20
40 64 0.56
41 26 0.23
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:82626344 original size:80 final size:80
Alignment explanation
Indices: 82626207--82626384 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
82626197 GCTCGATTGT
* * *
82626207 CTTCGGGACATAGCCCGGTTATAGTGATTCCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTA
1 CTTCGGGACTTAGCCCGGTTATAGTGACTCCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTA
* * *
82626272 AC-TCGCATAAATGC
66 ACTTAGCACAAAAGC
* * *
82626286 CTTCGGGACTTAACCCGGTTTTGGTGACTCACACAAATGCCTTCGGGAATT-GACCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTGACTC-CACAAATGCCTTCGGGAATTAG-CCCGGATTTAG
*
82626350 TCACTTAGCACAAAAGC
64 TAACTTAGCACAAAAGC
82626367 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
82626385 ATATCATTCG
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 26 0.31
80 33 0.39
81 26 0.31
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGTTATAGTGACTCCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTA
ACTTAGCACAAAAGC
Found at i:82628437 original size:27 final size:27
Alignment explanation
Indices: 82628406--82628608 Score: 169
Period size: 27 Copynumber: 7.5 Consensus size: 27
82628396 AGGGGCATAT
* *
82628406 CAGTCATCTTACCATGTAAGGGAAAAA
1 CAGTCATTTTACCATATAAGGGAAAAA
* * *
82628433 TAGTCATTTTACCTTATAAGGGTAAAA
1 CAGTCATTTTACCATATAAGGGAAAAA
* * * *
82628460 CAATCATTTTACAACATAAGGGCAAAA
1 CAGTCATTTTACCATATAAGGGAAAAA
*
82628487 TAGTCATTTTACC-TCATAAGGGAAAAA
1 CAGTCATTTTACCAT-ATAAGGGAAAAA
*
82628514 CAGTCATTTTACC-TCATAAGGGTAAAA
1 CAGTCATTTTACCAT-ATAAGGGAAAAA
* * * *
82628541 CAATCATTGTACC-TCATAAGGGCAAAT
1 CAGTCATTTTACCAT-ATAAGGGAAAAA
* * * * *
82628568 TATTCATTTTACCACATAAGGGCAAAT
1 CAGTCATTTTACCATATAAGGGAAAAA
*
82628595 CAGCCATTTTACCA
1 CAGTCATTTTACCA
82628609 ATTAGGAGTC
Statistics
Matches: 145, Mismatches: 29, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.29
Consensus pattern (27 bp):
CAGTCATTTTACCATATAAGGGAAAAA
Found at i:82628487 original size:54 final size:54
Alignment explanation
Indices: 82628422--82628607 Score: 221
Period size: 54 Copynumber: 3.4 Consensus size: 54
82628412 TCTTACCATG
* * * *
82628422 TAAGGGAAAAATAGTCATTTTACCTTATAAGGGTAAAACAATCATTTTACAACA
1 TAAGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAACAATCATTTTACCACA
* *
82628476 TAAGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAACAGTCATTTTACCTCA
1 TAAGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAACAATCATTTTACCACA
* * * * * ** *
82628530 TAAGGGTAAAACAATCATTGTACCTCATAAGGGCAAATTATTCATTTTACCACA
1 TAAGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAACAATCATTTTACCACA
*
82628584 TAAGGGC-AAATCAGCCATTTTACC
1 TAAGGGCAAAAT-AGTCATTTTACC
82628608 AATTAGGAGT
Statistics
Matches: 111, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 3 0.03
54 108 0.97
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (54 bp):
TAAGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAACAATCATTTTACCACA
Found at i:82628527 original size:81 final size:81
Alignment explanation
Indices: 82628407--82628607 Score: 276
Period size: 81 Copynumber: 2.5 Consensus size: 81
82628397 GGGGCATATC
* ** * * *
82628407 AGTCATCTTACCATGTAAGGGAAAAATAGTCATTTTACCTTATAAGGGTAAAACAATCATTTTAC
1 AGTCATTTTACCACATAAGGGAAAAACAGTCATTTTACCTCATAAGGGTAAAACAATCATTGTAC
82628472 AACATAAGGGCAAAAT
66 AACATAAGGGCAAAAT
*
82628488 AGTCATTTTACCTCATAAGGGAAAAACAGTCATTTTACCTCATAAGGGTAAAACAATCATTGTAC
1 AGTCATTTTACCACATAAGGGAAAAACAGTCATTTTACCTCATAAGGGTAAAACAATCATTGTAC
** *
82628553 CTCATAAGGGCAAATT
66 AACATAAGGGCAAAAT
* * * *
82628569 ATTCATTTTACCACATAAGGGCAAATCAGCCATTTTACC
1 AGTCATTTTACCACATAAGGGAAAAACAGTCATTTTACC
82628608 AATTAGGAGT
Statistics
Matches: 105, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (81 bp):
AGTCATTTTACCACATAAGGGAAAAACAGTCATTTTACCTCATAAGGGTAAAACAATCATTGTAC
AACATAAGGGCAAAAT
Found at i:82634598 original size:28 final size:28
Alignment explanation
Indices: 82634566--82634624 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
82634556 GCGTAGATCA
82634566 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
82634594 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
82634622 CGA
1 CGA
82634625 TATATCCCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:82641382 original size:44 final size:44
Alignment explanation
Indices: 82641327--82641411 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
82641317 ATGTAATCTG
* * *
82641327 AACTCATTGAGTTGTGGTCTGAGTTCATGATTTATGTGACATCC
1 AACTCAGTGAGTTGCGGTCTGAGTTCATGATATATGTGACATCC
*
82641371 AACTCAGTGAGTTGCGGTCTGAGTTCGTGATATATGTGACA
1 AACTCAGTGAGTTGCGGTCTGAGTTCATGATATATGTGACA
82641412 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (44 bp):
AACTCAGTGAGTTGCGGTCTGAGTTCATGATATATGTGACATCC
Found at i:82644763 original size:30 final size:30
Alignment explanation
Indices: 82644729--82644789 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
82644719 TATTTAACTC
*
82644729 AAACTTTTGCAAAATTACAATTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTACCCCT
* * *
82644759 AAACTTTTGCATATTTACACTTTTACCCCT
1 AAACTTTTGCAAAATTACAATTTTACCCCT
82644789 A
1 A
82644790 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTACCCCT
Found at i:82647628 original size:40 final size:40
Alignment explanation
Indices: 82647549--82647706 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
82647539 TTCGAATGAT
* * * *
82647549 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
82647589 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
82647629 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
82647669 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
82647707 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:82647727 original size:80 final size:80
Alignment explanation
Indices: 82647549--82647736 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
82647539 TTCGAATGAT
* *
82647549 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
82647614 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
82647629 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
82647690 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
82647710 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
82647737 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:82655696 original size:40 final size:40
Alignment explanation
Indices: 82655617--82655774 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
82655607 TTCGAATGAT
* * * *
82655617 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
82655657 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
82655697 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
82655737 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
82655775 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:82655795 original size:80 final size:80
Alignment explanation
Indices: 82655617--82655804 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
82655607 TTCGAATGAT
* *
82655617 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
82655682 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
82655697 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
82655758 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
82655778 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
82655805 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:82660569 original size:47 final size:47
Alignment explanation
Indices: 82660515--82660842 Score: 477
Period size: 47 Copynumber: 7.1 Consensus size: 47
82660505 TTAGGATTTT
** * * *
82660515 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
82660562 ATGTGATGAATGTGAACATGCATATATG-AATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
82660608 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
82660655 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
82660702 ATGTGATGAATGTGAACATGC--ATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
82660747 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
82660794 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAG-CGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
82660840 ATG
1 ATG
82660843 CGAAATGTGT
Statistics
Matches: 261, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
45 44 0.17
46 54 0.21
47 160 0.61
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:82660639 original size:25 final size:25
Alignment explanation
Indices: 82660609--82660686 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
82660599 GAATGGCCAA
82660609 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
82660634 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
82660656 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
82660681 TGTGAT
1 TGTGAT
82660687 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:82660770 original size:92 final size:92
Alignment explanation
Indices: 82660515--82660803 Score: 463
Period size: 92 Copynumber: 3.1 Consensus size: 92
82660505 TTAGGATTTT
** * * *
82660515 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATG--CATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
82660580 TGCATATATG-AATAAGGCCGAATGGCCA
64 TGCATATATGTGATAAGGCCGAATGGCCA
82660608 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATA--TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
82660673 TGCATATGTGTGATAAGGCCGAATGGCCA
64 TGCATATATGTGATAAGGCCGAATGGCCA
82660702 ATGTGATGAATGTGAACATGCATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 ATGTGATGAATGTGAACATGCATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
*
82660767 CATATATGTGATAAGGCAGAATGGCCA
66 CATATATGTGATAAGGCCGAATGGCCA
82660794 ATGTGATGAA
1 ATGTGATGAA
82660804 CGTGGAAGTG
Statistics
Matches: 184, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
91 3 0.02
92 76 0.41
93 64 0.35
94 41 0.22
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.26
Consensus pattern (92 bp):
ATGTGATGAATGTGAACATGCATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
CATATATGTGATAAGGCCGAATGGCCA
Found at i:82660789 original size:139 final size:140
Alignment explanation
Indices: 82660515--82660803 Score: 490
Period size: 139 Copynumber: 2.1 Consensus size: 140
82660505 TTAGGATTTT
** *
82660515 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
*
82660580 TGCATATATGAATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGC
66 TGCATATATGAATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
*
82660645 CGAATGGCCA
131 AGAATGGCCA
* * *
82660655 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
*
82660720 TGCATATGTG-ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
66 TGCATATATGAATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
82660784 AGAATGGCCA
131 AGAATGGCCA
82660794 ATGTGATGAA
1 ATGTGATGAA
82660804 CGTGGAAGTG
Statistics
Matches: 140, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
139 72 0.51
140 68 0.49
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
TGCATATATGAATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
AGAATGGCCA
Found at i:82660866 original size:139 final size:138
Alignment explanation
Indices: 82660515--82660888 Score: 432
Period size: 139 Copynumber: 2.7 Consensus size: 138
82660505 TTAGGATTTT
* ** * * * * *
82660515 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAACGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGCGA-GAATGTGAACA
*
82660580 TGCATAT-ATGAATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
65 TGCATATGA-G-ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
*
82660644 CCGAATGGCCA
128 CAGAATGGCCA
* * * *
82660655 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAACGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGCGA-GAATGTGAACA
*
82660720 TGCATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCA
65 TGCATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCA
82660785 GAATGGCCA
130 GAATGGCCA
* * * *
82660794 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAG-CGAATGGCTAATGCGA-AATGTGTATG
1 ATGTGATGAACGT-GAACATGCATATATGTGATAAAGCCGAATGGCCAATGCGAGAATGTG-A--
* * * * *
82660856 AGATGGATATGAGGTAAAGCCGAATGGCTAATG
62 ACATGCATATGAGATAAGGCCGAATGGCCAATG
82660889 CGAAACGTGT
Statistics
Matches: 206, Mismatches: 23, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
136 6 0.03
137 1 0.00
138 14 0.07
139 115 0.56
140 70 0.34
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (138 bp):
ATGTGATGAACGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGCGAGAATGTGAACAT
GCATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAG
AATGGCCA
Found at i:82660872 original size:45 final size:46
Alignment explanation
Indices: 82660817--82660997 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
82660807 GGAAGTGTAT
* *
82660817 ATATGTGGTAAAG-CGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
82660862 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
82660908 ATATGAGGTAAAG-CGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
82660953 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
82660998 TGTATATATA
Statistics
Matches: 126, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
45 56 0.44
46 70 0.56
ACGTcount: A:0.35, C:0.08, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:82660918 original size:91 final size:91
Alignment explanation
Indices: 82660817--82660997 Score: 290
Period size: 91 Copynumber: 2.0 Consensus size: 91
82660807 GGAAGTGTAT
* * *
82660817 ATATGTGGTAAAGCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTAAAGCCGAATG
1 ATATGAGGTAAAGCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAATG
*
82660882 GCTAATGCGAAACGTGTATGAGATGG
66 GCTAATGCGAAACATGTATGAGATGG
*
82660908 ATATGAGGTAAAGCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGGTAAAGCCAAATG
1 ATATGAGGTAAAGCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAATG
* * *
82660973 GCTAATGTGAGATATGTATGAGATG
66 GCTAATGCGAAACATGTATGAGATG
82660998 TGTATATATA
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 82 1.00
ACGTcount: A:0.35, C:0.08, G:0.32, T:0.25
Consensus pattern (91 bp):
ATATGAGGTAAAGCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAATG
GCTAATGCGAAACATGTATGAGATGG
Found at i:82662540 original size:40 final size:40
Alignment explanation
Indices: 82662485--82662718 Score: 361
Period size: 40 Copynumber: 6.0 Consensus size: 40
82662475 TGAGAGTTAT
82662485 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
82662525 ATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
82662564 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
82662604 ATATATCCGGGCTAAGT--CGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * *
82662642 ATATATCCAGGCTAAGTTCCGAAGAGCATTCATGTTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
82662682 ATATATCCGGGCTAA-ACCTCGAAG-GCATTCATGCTAG
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAG
82662719 GATTATGAGG
Statistics
Matches: 181, Mismatches: 9, Indels: 9
0.91 0.05 0.05
Matches are distributed among these distances:
38 37 0.20
39 51 0.28
40 93 0.51
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:82662577 original size:79 final size:79
Alignment explanation
Indices: 82662485--82662718 Score: 373
Period size: 78 Copynumber: 3.0 Consensus size: 79
82662475 TGAGAGTTAT
82662485 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAG
82662550 CATTCGTGCTAGTG
66 CATTCGTGCTAGTG
*
82662564 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGT-CGAAGAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAG
82662628 CATTCGTGCTAGTG
66 CATTCGTGCTAGTG
* * * * **
82662642 ATATATCCAGGCTAAGTTCCGAAGAGCATTCATGTTAGTGATATATCCGGGCTAAACCTCGAAG-
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTC-CGAAGA
*
82662706 GCATTCATGCTAG
65 GCATTCGTGCTAG
82662719 GATTATGAGG
Statistics
Matches: 144, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
78 71 0.49
79 68 0.47
80 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAG
CATTCGTGCTAGTG
Found at i:82662672 original size:78 final size:78
Alignment explanation
Indices: 82662485--82662718 Score: 371
Period size: 79 Copynumber: 3.0 Consensus size: 78
82662475 TGAGAGTTAT
82662485 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGT-CGAAGAG
82662550 CATTCGTGCTAGTG
65 CATTCGTGCTAGTG
*
82662564 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCGAAGAGC
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCGAAGAGC
82662629 ATTCGTGCTAGTG
66 ATTCGTGCTAGTG
* * * * *
82662642 ATATATCCAGGCTAAGTTCCGAAGAGCATTCATGTTAGTGATATATCCGGGCTAAACCTCGAAG-
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCT-AA-GTCGAAGA
*
82662706 GCATTCATGCTAG
64 GCATTCGTGCTAG
82662719 GATTATGAGG
Statistics
Matches: 145, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
78 69 0.48
79 70 0.48
80 6 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCGAAGAGC
ATTCGTGCTAGTG
Found at i:82662765 original size:28 final size:27
Alignment explanation
Indices: 82662723--82662824 Score: 78
Period size: 28 Copynumber: 3.6 Consensus size: 27
82662713 TGCTAGGATT
*
82662723 ATGAGGCACTGTGTGTGCAAGTTCTCCA
1 ATGA-GCACTATGTGTGCAAGTTCTCCA
* * ***
82662751 ACTGAGCACTATGTGTGCCAGATCAGTA
1 A-TGAGCACTATGTGTGCAAGTTCTCCA
* * *
82662779 GTTGAGGCACTATGTGTGCGAGTTCTTCA
1 -ATGA-GCACTATGTGTGCAAGTTCTCCA
82662808 ATCGAGCACTATGTGTG
1 AT-GAGCACTATGTGTG
82662825 TGAGATTGGT
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
28 34 0.60
29 23 0.40
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (27 bp):
ATGAGCACTATGTGTGCAAGTTCTCCA
Found at i:82662795 original size:29 final size:28
Alignment explanation
Indices: 82662756--82662884 Score: 109
Period size: 29 Copynumber: 4.5 Consensus size: 28
82662746 CTCCAACTGA
* *
82662756 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
82662785 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
* *
82662813 GCACTATGTGTGTGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
82662842 GCACTATGTGTGCGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
*
82662870 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
82662885 AATCAGTCAG
Statistics
Matches: 80, Mismatches: 16, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
28 36 0.45
29 44 0.55
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:82662815 original size:57 final size:57
Alignment explanation
Indices: 82662724--82662912 Score: 222
Period size: 57 Copynumber: 3.3 Consensus size: 57
82662714 GCTAGGATTA
* * * *
82662724 TGAGGCACTGTGTGTGCAAGTTCTCCAA-CTGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATC-GAGCACTATGTGTGCGAGATCAGTAGT
* ** *
82662781 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGTGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * *
82662838 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
82662895 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
82662913 AGTGTGTTTC
Statistics
Matches: 113, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
56 14 0.12
57 97 0.86
58 2 0.02
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:82662878 original size:28 final size:28
Alignment explanation
Indices: 82662785--82662884 Score: 121
Period size: 28 Copynumber: 3.5 Consensus size: 28
82662775 AGTAGTTGAG
*
82662785 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
* ** *
82662813 GCACTATGTGTGTGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATCGA
82662841 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
*
82662870 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
82662885 AATCAGTCAG
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 36 0.61
29 23 0.39
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATCGA
Found at i:82666789 original size:22 final size:22
Alignment explanation
Indices: 82666762--82666836 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
82666752 CATGCATATG
82666762 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
82666784 TGTGATCAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
82666809 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
82666831 TGTGAT
1 TGTGAT
82666837 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:82666919 original size:47 final size:47
Alignment explanation
Indices: 82666689--82666926 Score: 316
Period size: 47 Copynumber: 5.1 Consensus size: 47
82666679 TTAGGATTTT
** * * *
82666689 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
82666736 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
82666783 ATGTGATCAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
82666830 ATGTGATGAATGTGAACATGCATATATGTGACAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
82666877 ATGTGATGAACGTGGAA-GTGTATGTATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
82666924 ATG
1 ATG
82666927 CGAAATGTGT
Statistics
Matches: 170, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
47 167 0.98
48 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:82666958 original size:46 final size:46
Alignment explanation
Indices: 82666901--82667082 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
82666891 GAAGTGTATG
* *
82666901 TATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGA
1 TATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGA
82666947 TATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGA
1 TATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGA
82666993 TATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGA
1 TATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGA
* * * *
82667039 TATGTGGTAAAGCCAAATGGCTAATGTGAGATC-TGTATGAGATG
1 TATGAGGTAAAGCCGAATGGCTAATGCGA-AACGTGTATGAGATG
82667083 TGTATATATA
Statistics
Matches: 129, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
46 127 0.98
47 2 0.02
ACGTcount: A:0.34, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
TATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGA
Found at i:82671229 original size:42 final size:42
Alignment explanation
Indices: 82671129--82671237 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 42
82671119 TGTTATCATG
** * ** *
82671129 TAAGACCATATCTGGGATATGGCATTGATATGAGATTTTGTG
1 TAAGACCATATCTGGGATATGGCATCAAAATGAGATTTCCTA
* ** * *
82671171 TAATACCACGTTTGGGACATGGCATCAAAATGAGATTTCCTA
1 TAAGACCATATCTGGGATATGGCATCAAAATGAGATTTCCTA
82671213 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
82671238 TGATGTGAGG
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCAAAATGAGATTTCCTA
Found at i:82671612 original size:35 final size:35
Alignment explanation
Indices: 82671564--82671635 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
82671554 TGTGTATGTG
*
82671564 TATTAATTGCATGCAAGCTTACTAAGC-TTATTGCT
1 TATTAATTACATGCAAGCTTACTAAGCTTTA-TGCT
82671599 TATTAATTACATGCAAGCTTACTAAGCTTTATGCT
1 TATTAATTACATGCAAGCTTACTAAGCTTTATGCT
82671634 TA
1 TA
82671636 CTCCCTCTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 32 0.91
36 3 0.09
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (35 bp):
TATTAATTACATGCAAGCTTACTAAGCTTTATGCT
Found at i:82673883 original size:30 final size:30
Alignment explanation
Indices: 82673849--82673909 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
82673839 TCTTTAATAC
*
82673849 AAACTTTGGAAAAATTACATTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
82673879 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
82673909 A
1 A
82673910 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:82700995 original size:80 final size:80
Alignment explanation
Indices: 82700911--82701059 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
82700901 TATGGTAACC
* * * *
82700911 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
82700975 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
82700991 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
82701056 CCGG
66 CCGG
82701060 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:82701001 original size:40 final size:38
Alignment explanation
Indices: 82700952--82701059 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82700942 ATCACGATTT
*
82700952 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82700992 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82701032 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82701060 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82709111 original size:80 final size:80
Alignment explanation
Indices: 82709027--82709175 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
82709017 TATGGTAACC
* * * *
82709027 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
82709091 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
82709107 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
82709172 CCGG
66 CCGG
82709176 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:82709117 original size:40 final size:38
Alignment explanation
Indices: 82709068--82709175 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82709058 ATCACGATTT
*
82709068 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82709108 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82709148 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82709176 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82713577 original size:144 final size:142
Alignment explanation
Indices: 82713343--82713651 Score: 383
Period size: 144 Copynumber: 2.2 Consensus size: 142
82713333 AAAATCATAT
* ** *
82713343 ATAAACAACTATTGATAAAACTAATTTAGTATAAAAAAGTAGAACATAAATTTAATATCCAAAAA
1 ATAAACAACTATTGATAAAACTAAGTTAACATAAAAAAGTAGAACATAAATTCAATATCCAAAAA
* * ** *
82713408 TCAAACATAATCAATTATTGATAAAACTAG-TCCTA-AGCATAAATAAGTAGACCATAAATTCAA
66 CCAAACATAAACAACCATTGATAAAACTAGAT--TACA-CATAAATAAGTAGAACAT-AATTCAA
* **
82713471 TATCCAAAGACCAGGC
127 TATCCAAAAACCAAAC
* *
82713487 ATAAACAACTATTAATAAAAC-AAGGTTACACATAAATAAGTAGAACATAAATTCAATATCC-AA
1 ATAAACAACTATTGATAAAACTAA-GTTA-ACATAAAAAAGTAGAACATAAATTCAATATCCAAA
*
82713550 AACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAATTTAATA
64 AACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAATTCAATA
*
82713615 TCCAAAAAGCAAAC
129 TCCAAAAACCAAAC
*
82713629 ATAAATAACTATTGATAAAACTA
1 ATAAACAACTATTGATAAAACTA
82713652 GTTTTGTAAC
Statistics
Matches: 142, Mismatches: 18, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
142 37 0.26
143 22 0.15
144 54 0.38
145 29 0.20
ACGTcount: A:0.54, C:0.15, G:0.07, T:0.24
Consensus pattern (142 bp):
ATAAACAACTATTGATAAAACTAAGTTAACATAAAAAAGTAGAACATAAATTCAATATCCAAAAA
CCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAATTCAATATC
CAAAAACCAAAC
Found at i:82713652 original size:71 final size:71
Alignment explanation
Indices: 82713318--82713652 Score: 383
Period size: 71 Copynumber: 4.7 Consensus size: 71
82713308 TCACCTGTGA
* * * * ** *
82713318 ATAAATTTTATATCC-AAAATCATATATAAACAACTATTGATAAAACTA-ATTTAGTATAAAAAA
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGA-TTAACATAAATAA
82713381 GTAGAAC
65 GTAGAAC
* * *
82713388 ATAAATTTAATATCCAAAAATCAAACATAATCAATTATTGATAAAACTAG-TCCTAAGCATAAAT
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGAT--TAA-CATAAAT
*
82713452 AAGTAGACC
63 AAGTAGAAC
* * ** * * *
82713461 ATAAATTCAATATCCAAAGACCAGGCATAAACAACTATTAATAAAACAAGGTTACACATAAATAA
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTA-ACATAAATAA
82713526 GTAGAAC
65 GTAGAAC
* *
82713533 ATAAATTCAATATCC-AAAACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAA
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTA-ACATAAATAA
82713597 GTAGAAC
65 GTAGAAC
* *
82713604 AT-AATTTAATATCCAAAAAGCAAACATAAATAACTATTGATAAAACTAG
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
82713653 TTTTGTAACG
Statistics
Matches: 227, Mismatches: 30, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
70 26 0.11
71 111 0.49
72 34 0.15
73 55 0.24
74 1 0.00
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (71 bp):
ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTAACATAAATAAG
TAGAAC
Found at i:82714015 original size:26 final size:26
Alignment explanation
Indices: 82713979--82714081 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
82713969 TACAAACTGA
82713979 AATGGGTTAGGTAAATGTTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGAT
* *
82714005 AATGGATTAGGTAAATATTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGAT
82714031 AATGGGTTAGGTAAATGTTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGAT
*
82714057 AATGGTTTAGG-AAATGTTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGAT
82714082 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
25 14 0.19
26 58 0.81
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
AATGGGTTAGGTAAATGTTCCATGAT
Found at i:82720329 original size:70 final size:71
Alignment explanation
Indices: 82720246--82720408 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
82720236 CGATTTGTCT
82720246 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA-TTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82720310 CTTTCA
66 CTTTCA
82720316 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82720381 CTTTCA
66 CTTTCA
*
82720387 CGTAGCTTTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
82720409 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 60 0.66
71 31 0.34
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:82745865 original size:40 final size:39
Alignment explanation
Indices: 82745697--82745867 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
82745687 AGAAATTGAA
* *
82745697 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
82745737 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
82745777 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
82745817 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
82745857 TGATATCCGGG
1 TGATATCCGGG
82745868 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:82753900 original size:40 final size:39
Alignment explanation
Indices: 82753732--82753902 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
82753722 AGAAATTGAA
* *
82753732 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
82753772 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
82753812 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
82753852 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
82753892 TGATATCCGGG
1 TGATATCCGGG
82753903 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:82766201 original size:2 final size:2
Alignment explanation
Indices: 82766194--82766228 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
82766184 GTTGCAAGCT
82766194 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82766229 GCATACATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:82777686 original size:28 final size:28
Alignment explanation
Indices: 82777617--82777686 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
82777607 TCACAAATTG
* * *
82777617 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGACTATATA
82777645 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGACTATAT-A
82777673 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82777687 GGCTTATTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATATA
Found at i:82781808 original size:40 final size:39
Alignment explanation
Indices: 82781764--82781956 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
82781754 GTTCAAAACA
* * ** * *
82781764 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
82781804 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
82781844 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
82781883 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
82781922 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
82781957 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:82781875 original size:39 final size:39
Alignment explanation
Indices: 82781794--82781956 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
82781784 TATGGTAACC
* *
82781794 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
82781834 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82781873 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82781912 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
82781951 CGCACA
1 CGCACA
82781957 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:82789790 original size:40 final size:39
Alignment explanation
Indices: 82789746--82789938 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
82789736 GTTCAAAACA
* * ** * *
82789746 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
82789786 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
82789826 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
82789865 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
82789904 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
82789939 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:82789857 original size:39 final size:39
Alignment explanation
Indices: 82789776--82789938 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
82789766 TATGGTAACC
* *
82789776 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
82789816 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82789855 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82789894 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
82789933 CGCACA
1 CGCACA
82789939 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:82796391 original size:40 final size:40
Alignment explanation
Indices: 82796332--82796518 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
82796322 CATTGGAATG
* * * *
82796332 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
82796372 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
82796412 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
82796452 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
82796492 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
82796519 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:82796434 original size:80 final size:80
Alignment explanation
Indices: 82796332--82796485 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
82796322 CATTGGAATG
* * ** *
82796332 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
82796397 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
82796412 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
82796477 ATCGTGCGA
66 ATCGTGCGA
82796486 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:82796500 original size:80 final size:80
Alignment explanation
Indices: 82796336--82796518 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
82796326 GGAATGATAT
* ** * *
82796336 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
82796401 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
82796416 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
82796481 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
82796496 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
82796519 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:82796538 original size:80 final size:80
Alignment explanation
Indices: 82796336--82796553 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
82796326 GGAATGATAT
* * * * * * * *
82796336 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
82796400 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
82796416 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
82796481 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
82796496 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
82796554 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:82804440 original size:40 final size:40
Alignment explanation
Indices: 82804381--82804567 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
82804371 CATTGGAATG
* * * *
82804381 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
82804421 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
82804461 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
82804501 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
82804541 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
82804568 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:82804483 original size:80 final size:80
Alignment explanation
Indices: 82804381--82804534 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
82804371 CATTGGAATG
* * ** *
82804381 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
82804446 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
82804461 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
82804526 ATCGTGCGA
66 ATCGTGCGA
82804535 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:82804549 original size:80 final size:80
Alignment explanation
Indices: 82804385--82804567 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
82804375 GGAATGATAT
* ** * *
82804385 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
82804450 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
82804465 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
82804530 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
82804545 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
82804568 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Done.