Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 266 of 433
Found at i:82804587 original size:80 final size:80
Alignment explanation
Indices: 82804385--82804602 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
82804375 GGAATGATAT
* * * * * * * *
82804385 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
82804449 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
82804465 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
82804530 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
82804545 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
82804603 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:82808925 original size:40 final size:39
Alignment explanation
Indices: 82808880--82809087 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
82808870 CGGAATACAA
*
82808880 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82808920 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82808960 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
82809000 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
82809040 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
82809080 CCGGATAT
1 CCGGATAT
82809088 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82809020 original size:80 final size:80
Alignment explanation
Indices: 82808880--82809086 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
82808870 CGGAATACAA
* * *
82808880 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
82808944 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
82808960 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
82809024 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
82809040 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
82809087 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:82814335 original size:30 final size:30
Alignment explanation
Indices: 82814301--82814361 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
82814291 TCCTTAACTC
82814301 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
82814331 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
82814361 A
1 A
82814362 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:82815842 original size:25 final size:25
Alignment explanation
Indices: 82815812--82815878 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
82815802 GTTCTGACCT
*
82815812 ACAGCTCGTGTGAGCATTTTAATTC
1 ACAGCTCGTGTGAGCATTCTAATTC
* *
82815837 ATAGCTCTTGTGAGCATTCTAATTC
1 ACAGCTCGTGTGAGCATTCTAATTC
82815862 ACAGCTCGTGTGAGCAT
1 ACAGCTCGTGTGAGCAT
82815879 ACATGTATAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATTCTAATTC
Found at i:82821143 original size:46 final size:44
Alignment explanation
Indices: 82821052--82821144 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
82821042 TTACAACATT
*
82821052 ATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTCC
***
82821096 ATTCCATTCAACCAAACAGTTGAATTACTTATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACACAAGAA-TAC-TATTACAGCTCTATTCC
82821142 ATT
1 ATT
82821145 ACAGCTCCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 21 0.49
45 3 0.07
46 19 0.44
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.33
Consensus pattern (44 bp):
ATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTCC
Found at i:82821147 original size:16 final size:16
Alignment explanation
Indices: 82821126--82821181 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
82821116 TGAATTACTT
82821126 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
82821142 ATTACAGCTCCATTCA
1 ATTACAGCTCTATTCC
*
82821158 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
82821174 ATTACAGC
1 ATTACAGC
82821182 CAACCAAACG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.32
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:82825853 original size:46 final size:46
Alignment explanation
Indices: 82825760--82826020 Score: 207
Period size: 47 Copynumber: 5.7 Consensus size: 46
82825750 TGTGCGGTGC
* * *
82825760 CATGTCCCAGACATGGTCTTACAC-AGAC-ACATCTCGTA-ACTGATG
1 CATGTCCCAGACATGGTCTTACACTAG-CTTCATCTCG-AGGCCGATG
82825805 CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTT-CATCTCGAGGCCGATG
* ** * * * *
82825851 CATGTCCCAGACAT-GTCTTACACTAGAATTTGTCTCAATGTCAATG
1 CATGTCCCAGACATGGTCTTACACTAG-CTTCATCTCGAGGCCGATG
* * *
82825897 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCT-TCAT-CTCGAGGCCGATG
* * * * *
82825945 CAGGTCCCAGACATGGTCTTA-AGTTGGCTCTCATAAT-GTGGCCGATG
1 CATGTCCCAGACATGGTCTTACA-CTAGCT-TCAT-CTCGAGGCCGATG
82825992 CATGTCCCAGACAT-GTCTTACACTAGCTT
1 CATGTCCCAGACATGGTCTTACACTAGCTT
82826021 GCACAAGTGA
Statistics
Matches: 180, Mismatches: 25, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
44 10 0.06
45 18 0.10
46 59 0.33
47 74 0.41
48 18 0.10
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTAGCTTCATCTCGAGGCCGATG
Found at i:82831636 original size:20 final size:20
Alignment explanation
Indices: 82831611--82831648 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
82831601 GTTTATTCGC
*
82831611 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
82831631 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
82831649 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:82833309 original size:28 final size:28
Alignment explanation
Indices: 82833277--82833345 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
82833267 GCGTAGATCA
82833277 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
82833305 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
82833333 CGATA-TACCCCTA
1 CGAAATTACCCCTA
82833346 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:82837471 original size:2 final size:2
Alignment explanation
Indices: 82837466--82837495 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
82837456 GTGAAATTCG
82837466 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82837496 TTTGAAAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:82837859 original size:36 final size:39
Alignment explanation
Indices: 82837819--82837911 Score: 93
Period size: 40 Copynumber: 2.4 Consensus size: 39
82837809 GGTTAAATAT
*
82837819 GCATGATATTTGAT-G-TGA-ATCCGGGCTTAAAGACCC
1 GCATGATATATGATGGATGATATCCGGGCTTAAAGACCC
* * *
82837855 GCATGCTATATGCTGGAATTATATCCGGGCTTAAAGACCC
1 GCATGATATATGATGG-ATGATATCCGGGCTTAAAGACCC
* * *
82837895 GCAGGCTATATGCTGGA
1 GCATGATATATGATGGA
82837912 ATTATACTCG
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
36 11 0.23
37 1 0.02
39 3 0.06
40 33 0.69
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (39 bp):
GCATGATATATGATGGATGATATCCGGGCTTAAAGACCC
Found at i:82837881 original size:40 final size:40
Alignment explanation
Indices: 82837837--82837980 Score: 177
Period size: 39 Copynumber: 3.6 Consensus size: 40
82837827 TTTGATGTGA
* *
82837837 ATCCGGGCTTAAAGACCCGCATGCTATATGCTGGAATTAT
1 ATCCGGACTTAAAGACCCGCAGGCTATATGCTGGAATTAT
*
82837877 ATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTAT
1 ATCCGGACTTAAAGACCCGCAGGCTATATGCTGGAATTAT
** *
82837917 A-CTCGGACTT-AAGGTCCGCAGGCTATGTGCTGGAATTAT
1 ATC-CGGACTTAAAGACCCGCAGGCTATATGCTGGAATTAT
* **
82837956 AACCGGACTT-AAGGTCCGCAGGCTA
1 ATCCGGACTTAAAGACCCGCAGGCTA
82837981 CGTGTTGGAA
Statistics
Matches: 97, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
39 50 0.52
40 47 0.48
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGACTTAAAGACCCGCAGGCTATATGCTGGAATTAT
Found at i:82841919 original size:30 final size:30
Alignment explanation
Indices: 82841883--82841942 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
82841873 TTCCCAAGCC
**
82841883 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAACGTAATTATGCAAAAGTT
* *
82841913 TAGGGGCAAAAACGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAACGTAATTATGCAAAAGTT
82841943 CATATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAAACGTAATTATGCAAAAGTT
Found at i:82846103 original size:48 final size:48
Alignment explanation
Indices: 82846028--82846179 Score: 259
Period size: 48 Copynumber: 3.2 Consensus size: 48
82846018 AAATGAGATT
* *
82846028 CTGTGTAAGACCATGTCTGGGATATGGCATCGACGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
82846076 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* *
82846124 CTGTGTAAGACCCTGTCTGGGACATGGCATCGGCGACGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
*
82846172 CTATGTAA
1 CTGTGTAA
82846180 CACCCCGTAC
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 99 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.28
Consensus pattern (48 bp):
CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
Found at i:82847674 original size:40 final size:40
Alignment explanation
Indices: 82847612--82847765 Score: 128
Period size: 40 Copynumber: 3.9 Consensus size: 40
82847602 TTATAGTGAT
* * * * ***
82847612 TCGCACGATTGCCTTCGTGTCTTAACCCGGATTTGGTAAC
1 TCGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAAC
* * *
82847652 TTGCACAAATGCCATCGGGTCTTAGCCCGGATATAACAAC
1 TCGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAAC
* * * **
82847692 TCGCACGAATGCCTTCGGGTCTTAGCCCAGATATAATTAC
1 TCGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAAC
* * * * *
82847732 TAGCATAATTGCCTTCGGGACTTAGCCCGGATAT
1 TCGCACAAATGCCTTCGGGTCTTAACCCGGATAT
82847766 CATTCCAATG
Statistics
Matches: 92, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 92 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAAC
Found at i:82853962 original size:22 final size:22
Alignment explanation
Indices: 82853930--82853981 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
82853920 CACTAAGTCA
* *
82853930 ACAGGATGGCTCAATACCGTAG
1 ACAGGACGGCTCAACACCGTAG
* * *
82853952 GCAGGACGGCTGAACGCCGTAG
1 ACAGGACGGCTCAACACCGTAG
82853974 ACAGGACG
1 ACAGGACG
82853982 ACTAAAGGCC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.35, T:0.12
Consensus pattern (22 bp):
ACAGGACGGCTCAACACCGTAG
Found at i:82854845 original size:27 final size:26
Alignment explanation
Indices: 82854797--82854856 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
82854787 GCGAGGCTAC
*
82854797 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
82854824 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
82854850 CAAATAT
1 CAGATAT
82854857 ATATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:82861924 original size:26 final size:27
Alignment explanation
Indices: 82861895--82861946 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
82861885 GTAGTCCTAC
* *
82861895 CCTAC-AGGGTATTTTAGTAATTCTAT
1 CCTACAAGGGTATTTCAATAATTCTAT
82861921 CCTACAAGGGTATTTCAATAATTCTA
1 CCTACAAGGGTATTTCAATAATTCTA
82861947 AAACTTATCC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (27 bp):
CCTACAAGGGTATTTCAATAATTCTAT
Found at i:82863304 original size:29 final size:29
Alignment explanation
Indices: 82863271--82863335 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
82863261 GTGACGAGAT
*
82863271 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
82863300 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
82863329 CGGCACT
1 TGGCACT
82863336 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:82872148 original size:49 final size:49
Alignment explanation
Indices: 82872057--82872223 Score: 131
Period size: 48 Copynumber: 3.4 Consensus size: 49
82872047 TGTGCTAGTA
* * *** * *
82872057 TAAGTCCATGTTTGGAACAT-CGCATCACCCATATTATCAGAGCCAGTG
1 TAAGACCATGTTTGGAACATGGGCATTGGCCACATTATAAGAGCCAGTG
* ***
82872105 TAAGACCATGTTTGGTACATGGGCATTGGCCACATTATAAGAGCCAACA
1 TAAGACCATGTTTGGAACATGGGCATTGGCCACATTATAAGAGCCAGTG
* * * ** * *
82872154 TAAAACCATGTTTGGAACAT-GGTATTGGCGATGTTGTGAGAGCCAGTG
1 TAAGACCATGTTTGGAACATGGGCATTGGCCACATTATAAGAGCCAGTG
* * *
82872202 TAGGATCATGTTTGGGACATGG
1 TAAGACCATGTTTGGAACATGG
82872224 CATCAGAATC
Statistics
Matches: 91, Mismatches: 26, Indels: 3
0.76 0.22 0.03
Matches are distributed among these distances:
48 53 0.58
49 38 0.42
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (49 bp):
TAAGACCATGTTTGGAACATGGGCATTGGCCACATTATAAGAGCCAGTG
Found at i:82872350 original size:48 final size:48
Alignment explanation
Indices: 82872191--82872422 Score: 182
Period size: 48 Copynumber: 4.9 Consensus size: 48
82872181 GCGATGTTGT
* * * * * * *
82872191 GAGAGCCAGTGTAGGATCATGTTTGGGACATGGCATCAGAATCGATATC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGACA-C
* ** * * * * *
82872240 TA-TTCTAGTGTAGGACCATGTCAGGGACATGGCACCAGGCA-C-AAAT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATCGACAC
* * *
82872286 GAGAGCTAGTGTAAGACCATGTCTGGGACATGCCATCGGCATTGAGAC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGACAC
* * * *
82872334 GAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGACAT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGACAC
* * * * *
82872382 GTGAGCAAGTGTAAAACCATGTTTGGAACATGGCATCGGCA
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
82872423 ATTCACCATT
Statistics
Matches: 142, Mismatches: 37, Indels: 9
0.76 0.20 0.05
Matches are distributed among these distances:
46 5 0.04
47 30 0.21
48 104 0.73
49 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGACAC
Found at i:82885051 original size:91 final size:91
Alignment explanation
Indices: 82884892--82885073 Score: 292
Period size: 91 Copynumber: 2.0 Consensus size: 91
82884882 TTGCTAAAGC
* * * *
82884892 TATACTACTGTTCGATAGGTACACTTGCCTTCATTATGATAATAGTTAGTTTCAAGAATGATTTA
1 TATACTACTCTTCGATAGGTACACTTGCCTTCATCATGATAATAGTTAGTTTCAAGAACGATTAA
*
82884957 TTATAAATATTTAAAACTTATCGCGA
66 TTATAAATATTTAAAACCTATCGCGA
* *
82884983 TATACTACTCTTCGATAGGTACACTTGCCTTCGTCGTGATAATAGTTAGTTTCAAGAACGATTAA
1 TATACTACTCTTCGATAGGTACACTTGCCTTCATCATGATAATAGTTAGTTTCAAGAACGATTAA
*
82885048 TTATAAATATTTAAAACCTATTGCGA
66 TTATAAATATTTAAAACCTATCGCGA
82885074 ATATCATGTA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 83 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (91 bp):
TATACTACTCTTCGATAGGTACACTTGCCTTCATCATGATAATAGTTAGTTTCAAGAACGATTAA
TTATAAATATTTAAAACCTATCGCGA
Found at i:82889238 original size:19 final size:19
Alignment explanation
Indices: 82889214--82889250 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
82889204 CTTGGGTTGT
*
82889214 GAATAGGCCAAATTGGCCG
1 GAATAGGCCAAATGGGCCG
*
82889233 GAATAGGCTAAATGGGCC
1 GAATAGGCCAAATGGGCC
82889251 CAATGGGCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.32, T:0.16
Consensus pattern (19 bp):
GAATAGGCCAAATGGGCCG
Found at i:82889370 original size:29 final size:28
Alignment explanation
Indices: 82889341--82889474 Score: 144
Period size: 28 Copynumber: 4.7 Consensus size: 28
82889331 ATAATGTGAT
*
82889341 TTGGGCCGGATGGGCCATATAAATGAGA
1 TTGGGCCTGATGGGCCATATAAATGAGA
* * * *
82889369 TTGGGCCTAATGGGACATATAAAGGCGA
1 TTGGGCCTGATGGGCCATATAAATGAGA
*
82889397 TTTGGGCCTGATGGGCCATAAGAATATGA-A
1 -TTGGGCCTGATGGGCCAT-ATAA-ATGAGA
*
82889427 CTGGGCCTGATGGGCCATATAAATGAGA
1 TTGGGCCTGATGGGCCATATAAATGAGA
* **
82889455 TTGGACCAAATGGGCCATAT
1 TTGGGCCTGATGGGCCATAT
82889475 GCATGTATGT
Statistics
Matches: 86, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
27 4 0.05
28 43 0.50
29 33 0.38
30 4 0.05
31 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATAAATGAGA
Found at i:82889416 original size:57 final size:58
Alignment explanation
Indices: 82889338--82889449 Score: 156
Period size: 58 Copynumber: 1.9 Consensus size: 58
82889328 AATATAATGT
* *
82889338 GATTTGGGCCGGATGGGCCAT-ATAA-ATGAGATTGGGCCTAATGGGACATATAAAGGC
1 GATTTGGGCCGGATGGGCCATAAGAATATGA-ACTGGGCCTAATGGGACATATAAAGGC
* * *
82889395 GATTTGGGCCTGATGGGCCATAAGAATATGAACTGGGCCTGATGGGCCATATAAA
1 GATTTGGGCCGGATGGGCCATAAGAATATGAACTGGGCCTAATGGGACATATAAA
82889450 TGAGATTGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 20 0.42
58 24 0.50
59 4 0.08
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.23
Consensus pattern (58 bp):
GATTTGGGCCGGATGGGCCATAAGAATATGAACTGGGCCTAATGGGACATATAAAGGC
Found at i:82893172 original size:37 final size:36
Alignment explanation
Indices: 82893122--82893208 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
82893112 TACGAAGTCT
82893122 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
82893158 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
82893195 TCACCCGGAACATA
1 T-ACCCGG-ACATA
82893209 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:82893344 original size:49 final size:49
Alignment explanation
Indices: 82893277--82893919 Score: 1137
Period size: 49 Copynumber: 13.1 Consensus size: 49
82893267 TTTACCACAT
*
82893277 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
82893326 ATATATATACATTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
82893375 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
82893424 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
82893473 ATATATATACACTTTCACATTCATCACGTTGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
82893522 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
82893571 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
82893620 ATATATATACACTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
82893669 ATATATATACACTTTCACATTCATCACGTCGCCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
82893718 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCCTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
82893767 ATATATATACA-TTTCCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTT-CACATTCATCACATCGGCCATTAGGCCTTATCAC
*
82893816 ATATATATACA-TTTCCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATATACACTTT-CACATTCATCACATCGGCCATTAGGCCTTATCAC
82893865 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
82893914 ATATAT
1 ATATAT
82893920 TATTATGTAC
Statistics
Matches: 573, Mismatches: 19, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 3 0.01
49 567 0.99
50 3 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:82896879 original size:16 final size:17
Alignment explanation
Indices: 82896858--82896896 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
82896848 AGTTGTAACG
82896858 CCCAAAAA-TCTCGAAA-
1 CCCAAAAATTCT-GAAAT
82896874 CCCAAAAATTCTGAAAT
1 CCCAAAAATTCTGAAAT
82896891 CCCAAA
1 CCCAAA
82896897 CTTTTTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.49, C:0.31, G:0.05, T:0.15
Consensus pattern (17 bp):
CCCAAAAATTCTGAAAT
Found at i:82897557 original size:22 final size:20
Alignment explanation
Indices: 82897512--82897558 Score: 51
Period size: 19 Copynumber: 2.3 Consensus size: 20
82897502 TTTTTTTTTT
* *
82897512 TTTTCTTTTCTTCCTACCGA
1 TTTTCTATTCTTCCTACCAA
82897532 -TTTCTATTCTTCTCTACACAA
1 TTTTCTATTCTTC-CTAC-CAA
82897553 TTTTCT
1 TTTTCT
82897559 TTATTTTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 11 0.50
20 4 0.18
21 2 0.09
22 5 0.23
ACGTcount: A:0.15, C:0.28, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTTCTATTCTTCCTACCAA
Found at i:82898135 original size:19 final size:18
Alignment explanation
Indices: 82898125--82898158 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82898115 ATTGGCCGGA
82898125 ATGGGCTAAATGGGCCCG
1 ATGGGCTAAATGGGCCCG
*
82898143 ATGGGCT-GATGGGCCC
1 ATGGGCTAAATGGGCCC
82898159 ATGTTAGACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.18, C:0.24, G:0.41, T:0.18
Consensus pattern (18 bp):
ATGGGCTAAATGGGCCCG
Found at i:82898288 original size:28 final size:29
Alignment explanation
Indices: 82898241--82898301 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 29
82898231 TTGGGTCGGC
*
82898241 TGGGCCATATAAATGAGA-TTGGGCCTAA
1 TGGGCCATATAAAGGAGATTTGGGCCTAA
*
82898269 TGGGCCATATAAAGGTGATTTGGGCCTAA
1 TGGGCCATATAAAGGAGATTTGGGCCTAA
82898298 TGGG
1 TGGG
82898302 TAATAAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 16 0.53
29 14 0.47
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGGCCATATAAAGGAGATTTGGGCCTAA
Found at i:82901477 original size:18 final size:18
Alignment explanation
Indices: 82901451--82901493 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
82901441 ATCAAAAACG
*
82901451 GAAGGAGTTCCTTGAATT
1 GAAGCAGTTCCTTGAATT
82901469 GAAGCAGTTCCTTGAATT
1 GAAGCAGTTCCTTGAATT
82901487 GAAGCAG
1 GAAGCAG
82901494 AAGAATTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (18 bp):
GAAGCAGTTCCTTGAATT
Found at i:82913131 original size:40 final size:40
Alignment explanation
Indices: 82913030--82913208 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
82913020 CGAATGATAT
* * * *
82913030 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
82913071 CTGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
82913111 CCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
82913151 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
82913191 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
82913209 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 90 0.79
41 24 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:82913168 original size:80 final size:81
Alignment explanation
Indices: 82913030--82913208 Score: 227
Period size: 80 Copynumber: 2.2 Consensus size: 81
82913020 CGAATGATAT
* * * *
82913030 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCTGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
82913095 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * *
82913111 CCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
82913174 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
82913191 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
82913209 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 58 0.69
81 25 0.30
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:82913221 original size:80 final size:80
Alignment explanation
Indices: 82913064--82913248 Score: 187
Period size: 80 Copynumber: 2.3 Consensus size: 80
82913054 GTGCTAAGTG
* * * * *
82913064 ACTAAATCTGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
* **
82913129 GCATTTATGCGAGTT
66 ACATCGATGCGAGTT
* * *
82913144 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAA
*
82913208 GACAATCGA-GCGAGTC
65 GAC-ATCGATGCGAGTT
* * * *
82913224 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
82913249 TACGTGATTC
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
79 8 0.09
80 75 0.87
81 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
ACATCGATGCGAGTT
Found at i:82913229 original size:40 final size:40
Alignment explanation
Indices: 82913151--82913234 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
82913141 GTTACTAAAT
* * *
82913151 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
82913191 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
82913231 CCGG
1 CCGG
82913235 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:82919115 original size:28 final size:28
Alignment explanation
Indices: 82919054--82919151 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
82919044 TCACAAATTG
** * *
82919054 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
82919083 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
82919111 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
82919139 GCACTAAGTGTGC
1 GCACTAAGTGTGC
82919152 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:82926779 original size:28 final size:28
Alignment explanation
Indices: 82926718--82926815 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
82926708 TCACAAATTG
** * *
82926718 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
82926747 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
82926775 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
82926803 GCACTAAGTGTGC
1 GCACTAAGTGTGC
82926816 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:82932201 original size:29 final size:30
Alignment explanation
Indices: 82932135--82932241 Score: 134
Period size: 29 Copynumber: 3.7 Consensus size: 30
82932125 TACATACATG
*
82932135 CATATGGCCCA-CTAGGCCCAA-TCTTATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
*
82932163 CAAATGGCCCATCT-GGCCCAATTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* * *
82932192 CTTATGGCCCA-CCAGGCCCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
82932221 CATATGGCCCAT-TAGGCCCAA
1 CATATGGCCCATCTAGGCCCAA
82932242 AGAATATTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
28 18 0.27
29 49 0.73
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:82948279 original size:71 final size:71
Alignment explanation
Indices: 82948193--82948356 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82948183 CGATTTGTCT
82948193 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82948258 CTTTCA
66 CTTTCA
82948264 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82948329 CTTTCA
66 CTTTCA
82948335 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
82948357 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:82948394 original size:71 final size:70
Alignment explanation
Indices: 82948193--82948390 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
82948183 CGATTTGTCT
* * * *
82948193 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82948258 CTTTCA
65 CTTTCA
* * * *
82948264 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82948329 CTTTCA
65 CTTTCA
* *
82948335 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
82948391 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:82955594 original size:68 final size:70
Alignment explanation
Indices: 82955517--82955677 Score: 290
Period size: 68 Copynumber: 2.3 Consensus size: 70
82955507 CGATTTGTCT
82955517 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGC-CC-AGCTACATTTATC
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCACCTAGCTACATTTATC
82955580 TTTCA
66 TTTCA
*
82955585 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGC-ACCTAGCTACATTTAT
82955650 CTTTCA
65 CTTTCA
82955656 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
82955678 GATACATCTC
Statistics
Matches: 89, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
68 47 0.53
70 2 0.02
71 40 0.45
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCACCTAGCTACATTTATC
TTTCA
Found at i:82955694 original size:68 final size:70
Alignment explanation
Indices: 82955517--82955711 Score: 240
Period size: 68 Copynumber: 2.8 Consensus size: 70
82955507 CGATTTGTCT
* * *
82955517 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGC--CC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
82955579 CTTTCA
65 CTTTCA
* * *
82955585 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
82955650 CTTTCA
65 CTTTCA
* * *
82955656 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
82955712 TACAGGGTGT
Statistics
Matches: 116, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
68 69 0.59
69 1 0.01
70 3 0.03
71 43 0.37
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:82962667 original size:70 final size:71
Alignment explanation
Indices: 82962584--82962746 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
82962574 CGATTTGTCT
82962584 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82962648 CTTTCA
66 CTTTCA
*
82962654 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82962719 CTTTCA
66 CTTTCA
82962725 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
82962747 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:82962784 original size:71 final size:70
Alignment explanation
Indices: 82962584--82962780 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
82962574 CGATTTGTCT
* * * *
82962584 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82962648 CTTTCA
65 CTTTCA
* * * *
82962654 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82962719 CTTTCA
65 CTTTCA
* *
82962725 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
82962781 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:82964394 original size:40 final size:40
Alignment explanation
Indices: 82964335--82964486 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
82964325 CAGTGGAATG
* * * *
82964335 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
82964375 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
82964415 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * *
82964455 AAATCCGGGTTAAGACCCGAAGGCAATCGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
82964487 GAATCACTAT
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.03
40 91 0.95
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:82964437 original size:80 final size:80
Alignment explanation
Indices: 82964335--82964488 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
82964325 CAGTGGAATG
* * ** *
82964335 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
82964400 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
82964415 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
82964480 ATCGTGCGA
66 ATCGTGCGA
82964489 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:82964503 original size:40 final size:40
Alignment explanation
Indices: 82964335--82964542 Score: 166
Period size: 40 Copynumber: 5.2 Consensus size: 40
82964325 CAGTGGAATG
* ** * * * *
82964335 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * ***
82964375 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * * *
82964415 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAA-TCACT
* *
82964455 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * * * * * * *
82964495 ATAACCGGGCTAGGTCCTGAAGACAATCGAGCGAGTCGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
82964535 ATATCCGG
1 ATATCCGG
82964543 TTAAATCCCG
Statistics
Matches: 137, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 134 0.98
41 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
Found at i:82964503 original size:80 final size:80
Alignment explanation
Indices: 82964339--82964506 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 80
82964329 GGAATGATAT
* * ** * *
82964339 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
82964404 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * *
82964419 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
82964484 TGCGAATCACTATAA
66 TGCGAATCACTATAA
82964499 CCGGGCTA
1 CCGGGCTA
82964507 GGTCCTGAAG
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 73 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:82972443 original size:80 final size:80
Alignment explanation
Indices: 82972359--82972507 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
82972349 TATGGTAACC
* * * *
82972359 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
82972423 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
82972439 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
82972504 CCGG
66 CCGG
82972508 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:82972449 original size:40 final size:38
Alignment explanation
Indices: 82972400--82972507 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82972390 ATCACGATTT
*
82972400 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82972440 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82972480 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82972508 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82976410 original size:47 final size:47
Alignment explanation
Indices: 82976357--82976607 Score: 421
Period size: 47 Copynumber: 5.3 Consensus size: 47
82976347 ACAAGATATG
82976357 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
82976404 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
82976451 TATATGTAATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
82976498 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
82976545 TATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
82976592 TATATGTGACAAGGCC
1 TATATGTGATAAGGCC
82976608 TAATTGTGAC
Statistics
Matches: 189, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 189 1.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:82976551 original size:25 final size:25
Alignment explanation
Indices: 82976523--82976600 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
82976513 CTAATGGCCA
82976523 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* ** ***
82976548 ATGTGAT-AAGGCCAAA-TGGCCA-
1 ATGTGATGAATGTGAAAGTGTATAT
82976570 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
82976595 ATGTGA
1 ATGTGA
82976601 CAAGGCCTAA
Statistics
Matches: 38, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
22 7 0.18
23 9 0.24
24 9 0.24
25 13 0.34
ACGTcount: A:0.36, C:0.05, G:0.28, T:0.31
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:82978370 original size:27 final size:28
Alignment explanation
Indices: 82978314--82978383 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
82978304 AAATTTGTAC
82978314 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
82978342 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
82978369 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82978384 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:82978394 original size:27 final size:27
Alignment explanation
Indices: 82978314--82978395 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
82978304 AAATTTGTAC
* *
82978314 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
82978342 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
82978369 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
82978396 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:82979842 original size:47 final size:47
Alignment explanation
Indices: 82979773--82979956 Score: 271
Period size: 47 Copynumber: 3.9 Consensus size: 47
82979763 GTGTTACACT
* *
82979773 AATGGCCGATGTGATTAATGTGAAAGTGTATATATGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* * *
82979820 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCT
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* * *
82979867 AATGGCCGATGTGATGGATGTGAAGGTGTATATATGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
*
82979914 AATGGCCAATGTGATCG-ATGTGAAAGTGTATAAATGTGATAAG
1 AATGGCCAATGTGAT-GAATGTGAAAGTGTATATATGTGATAAG
82979957 TCCCGAAGGG
Statistics
Matches: 122, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
47 121 0.99
48 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
Found at i:82979935 original size:94 final size:94
Alignment explanation
Indices: 82979771--82979956 Score: 311
Period size: 94 Copynumber: 2.0 Consensus size: 94
82979761 GGGTGTTACA
*
82979771 CTAATGGCCGATGTGATTAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
82979836 AATGTGAAAGTGTATATATGAGATAAGAC
66 AATGTGAAAGTGTATAAATGAGATAAGAC
* *
82979865 CTAATGGCCGATGTGATGGATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT-
*
82979930 G-ATGTGAAAGTGTATAAATGTGATAAG
65 GAATGTGAAAGTGTATAAATGAGATAAG
82979957 TCCCGAAGGG
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
94 85 0.99
95 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
AATGTGAAAGTGTATAAATGAGATAAGAC
Found at i:82984135 original size:26 final size:26
Alignment explanation
Indices: 82984079--82984149 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
82984069 GTCCCGATAT
*
82984079 ATGGCTCTTCGTGAGCTTCCTATTGA
1 ATGGCTCTTTGTGAGCTTCCTATTGA
* *
82984105 TTGGCTCTTTGTGAGCTTCTTGATT-A
1 ATGGCTCTTTGTGAGCTTCCT-ATTGA
*
82984131 ATGGCTCTCTG-GAGCTTCC
1 ATGGCTCTTTGTGAGCTTCC
82984150 CGAAATTTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
25 7 0.18
26 28 0.74
27 3 0.08
ACGTcount: A:0.13, C:0.23, G:0.24, T:0.41
Consensus pattern (26 bp):
ATGGCTCTTTGTGAGCTTCCTATTGA
Found at i:82984242 original size:24 final size:24
Alignment explanation
Indices: 82984215--82984285 Score: 79
Period size: 25 Copynumber: 2.9 Consensus size: 24
82984205 TGGCTCTACG
* **
82984215 GAGCTACCCGTTATTGGCTCTTAT
1 GAGCTTCCCGTTATTGGCTCGCAT
* *
82984239 GAGCTTCCCATTACATGGCTCGCAT
1 GAGCTTCCCGTTA-TTGGCTCGCAT
82984264 GAGCTTCCCGTTATATGGCTCG
1 GAGCTTCCCGTTAT-TGGCTCG
82984286 AAAGAGTGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
24 11 0.29
25 27 0.71
ACGTcount: A:0.17, C:0.28, G:0.23, T:0.32
Consensus pattern (24 bp):
GAGCTTCCCGTTATTGGCTCGCAT
Found at i:82984259 original size:25 final size:25
Alignment explanation
Indices: 82984237--82984285 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
82984227 ATTGGCTCTT
82984237 ATGAGCTTCCCATTACATGGCTCGC
1 ATGAGCTTCCCATTACATGGCTCGC
* *
82984262 ATGAGCTTCCCGTTATATGGCTCG
1 ATGAGCTTCCCATTACATGGCTCG
82984286 AAAGAGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.22, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCATTACATGGCTCGC
Found at i:82984632 original size:17 final size:17
Alignment explanation
Indices: 82984588--82984633 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
82984578 GAAATACATG
*
82984588 GAAATG-ATGGTAT-AT
1 GAAATGAATGATATAAT
*
82984603 GAAAT-ATTGATATAAT
1 GAAATGAATGATATAAT
82984619 GAAATGAATGATATA
1 GAAATGAATGATATA
82984634 TGTTTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 10 0.40
16 7 0.28
17 8 0.32
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.33
Consensus pattern (17 bp):
GAAATGAATGATATAAT
Found at i:82990387 original size:29 final size:29
Alignment explanation
Indices: 82990347--82990449 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
82990337 GTTGAGAGAT
*
82990347 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
82990376 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
82990405 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
82990434 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82990450 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:82998468 original size:29 final size:29
Alignment explanation
Indices: 82998428--82998501 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
82998418 GTTGAGAGAT
* *
82998428 TGGCACTGAGTGTGCGAGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
82998457 TGGCACTAAGTGTGCGAGTTTAAAGTATA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
82998486 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82998502 CGGCTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:83006403 original size:28 final size:27
Alignment explanation
Indices: 83006370--83006425 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
83006360 TTATACTCTG
*
83006370 ATATTG-TAAGGGGCTATGGCCCAGATTA
1 ATATTGAT-AGGGGCTAAGGCCCAG-TTA
*
83006398 ATATTGATATGGGCTAAGGCCCAGTTA
1 ATATTGATAGGGGCTAAGGCCCAGTTA
83006425 A
1 A
83006426 CTCCGGTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 4 0.16
28 20 0.80
29 1 0.04
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (27 bp):
ATATTGATAGGGGCTAAGGCCCAGTTA
Found at i:83013383 original size:48 final size:48
Alignment explanation
Indices: 83013306--83013412 Score: 153
Period size: 48 Copynumber: 2.2 Consensus size: 48
83013296 CGGATAGGTT
**
83013306 TTACACTAGCTTATGTATCACGAGACCGATGCATG-CCCTAGACATGTC
1 TTACACTAGCTTAAATATCACGAGACCGATGCATGTCCC-AGACATGTC
* * *
83013354 TTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 TTACACTAGCTTAAATATCACGAGACCGATGCATGTCCCAGACATGTC
83013402 TTACACTAGCT
1 TTACACTAGCT
83013413 CTCATACTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 49 0.94
49 3 0.06
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (48 bp):
TTACACTAGCTTAAATATCACGAGACCGATGCATGTCCCAGACATGTC
Found at i:83015682 original size:2 final size:2
Alignment explanation
Indices: 83015675--83015700 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
83015665 CCCATATTAG
83015675 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
83015701 GGCATTGGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83029302 original size:40 final size:39
Alignment explanation
Indices: 83029258--83029372 Score: 142
Period size: 39 Copynumber: 2.9 Consensus size: 39
83029248 AAGTGACCAT
*
83029258 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTAATAA
1 ATCCGGATTAAG-TCCGAAGGCATTTGTGCGAGTTAATAA
* *
83029298 ATCC-GAGTTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGA-TTAAGTCCGAAGGCATTTGTGCGAGTTAATAA
* * *
83029337 ACCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA
1 ATCCGGATTAAGT-CCGAAGGCATTTGTGCGAGTTA
83029373 CTATAACCGG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.54
40 30 0.46
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (39 bp):
ATCCGGATTAAGTCCGAAGGCATTTGTGCGAGTTAATAA
Found at i:83029373 original size:40 final size:39
Alignment explanation
Indices: 83029272--83029410 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 39
83029262 GGACTAAGAT
* *
83029272 CCGAAGGCATTTGTGCGAGTTAATAAATCCGAGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGTTAAGTC
83029311 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGTTAAGTC
* *
83029351 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AACCGGG-TTAAGTC
*
83029391 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTTGTGCGAGT
83029411 CGTTATATCC
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.39
40 51 0.57
41 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:83029434 original size:79 final size:79
Alignment explanation
Indices: 83029271--83029435 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
83029261 CGGACTAAGA
* * *
83029271 TCCGAAGGCATTTGTGCGAGTTAATAAATCCGAGTTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGAGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
*
83029336 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * * * *
83029350 CCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGCTT-TGTCCCGAAGGCATTTGAGCGAGTCG
1 TCCGAAGGCATTCGTGCGAGTTAATA-AATCCGAG-TTAAG-CCCGAAGGCATTTGAGCGAGTCA
* * *
83029413 TTATATCC-GGTTAAAT
63 CTAAACCCGGGTTAAAT
83029429 TCCGAAG
1 TCCGAAG
83029436 ATACGTGATT
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
79 41 0.59
80 29 0.41
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGAGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
AACCCGGGTTAAAT
Found at i:83038591 original size:42 final size:42
Alignment explanation
Indices: 83038539--83038682 Score: 146
Period size: 42 Copynumber: 3.4 Consensus size: 42
83038529 TGTATGACAT
*
83038539 TATCTGGGATATGGCATCAGTATGAGATTTCGTGTAAGACCA
1 TATCTAGGATATGGCATCAGTATGAGATTTCGTGTAAGACCA
*
83038581 TATCTAGGATATGGAATC-GATATGAGATTTCGTGTAAGACCA
1 TATCTAGGATATGGCATCAG-TATGAGATTTCGTGTAAGACCA
* * * ** ** * *
83038623 TAGCCAGGCTATTGGCATCAAAATGAGATCCCATGTAAAACCA
1 TATCTAGGATA-TGGCATCAGTATGAGATTTCGTGTAAGACCA
* *
83038666 TATCGAGGATAAGGCAT
1 TATCTAGGATATGGCAT
83038683 TGGTACGGTA
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 51 0.61
43 31 0.37
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (42 bp):
TATCTAGGATATGGCATCAGTATGAGATTTCGTGTAAGACCA
Found at i:83045542 original size:12 final size:12
Alignment explanation
Indices: 83045527--83045551 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83045517 TTATTAAATG
83045527 AATTAAAAGCCA
1 AATTAAAAGCCA
83045539 AATTAAAAGCCA
1 AATTAAAAGCCA
83045551 A
1 A
83045552 TTTTTGTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AATTAAAAGCCA
Found at i:83046420 original size:42 final size:41
Alignment explanation
Indices: 83046356--83046516 Score: 160
Period size: 42 Copynumber: 3.8 Consensus size: 41
83046346 ACTAAGATAT
*
83046356 GTGTAAGACCATATCTGTGATATGGCATCAGTATCAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCAT-AGTATCAGATTTC
* * * *
83046398 GTGTAAGACCATATCTAGGATATGGCATGGATATGAGTTTTC
1 GTGTAAGACCATATCTGGGATATGGCATAG-TATCAGATTTC
* * * * * *
83046440 GTGTAAGACCATAGCTGGGCTATTGGCATTGAAACGAGATCTC
1 GTGTAAGACCATATCTGGGATA-TGGCATAGTATC-AGATTTC
* *
83046483 ATGTAACACCATATCTGGGATATGGCATTAGTAT
1 GTGTAAGACCATATCTGGGATATGGCA-TAGTAT
83046517 GGTACCGAGT
Statistics
Matches: 94, Mismatches: 21, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
41 1 0.01
42 60 0.64
43 33 0.35
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (41 bp):
GTGTAAGACCATATCTGGGATATGGCATAGTATCAGATTTC
Found at i:83050412 original size:47 final size:47
Alignment explanation
Indices: 83050298--83050471 Score: 239
Period size: 47 Copynumber: 3.7 Consensus size: 47
83050288 GGATGGTTGA
* * *
83050298 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAG
*
83050346 G--TCCGAACTCGTTGAGTTGAGACCGAGTTCATGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAG
*
83050391 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAG
*
83050438 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAT
83050472 TTATGGATGC
Statistics
Matches: 114, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
43 6 0.05
45 4 0.04
46 29 0.25
47 74 0.65
48 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:83054378 original size:27 final size:28
Alignment explanation
Indices: 83054322--83054391 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
83054312 AAACTTGTAC
83054322 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83054350 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
83054377 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
83054392 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:83054402 original size:27 final size:27
Alignment explanation
Indices: 83054322--83054403 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
83054312 AAACTTGTAC
* *
83054322 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
83054350 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
83054377 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
83054404 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:83063100 original size:37 final size:36
Alignment explanation
Indices: 83063050--83063136 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
83063040 TACGAAGTCT
83063050 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
83063086 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
83063123 TCACCCGGAACATA
1 T-ACCCGG-ACATA
83063137 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:83063271 original size:49 final size:49
Alignment explanation
Indices: 83063205--83063406 Score: 368
Period size: 49 Copynumber: 4.1 Consensus size: 49
83063195 TTTACCACAT
* *
83063205 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
83063254 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
83063303 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
* *
83063352 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
83063401 ATATAT
1 ATATAT
83063407 TATTATGTAC
Statistics
Matches: 149, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 149 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:83066157 original size:27 final size:28
Alignment explanation
Indices: 83066101--83066170 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
83066091 AAACTTGTAC
83066101 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83066129 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
83066156 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
83066171 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:83066181 original size:27 final size:27
Alignment explanation
Indices: 83066101--83066182 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
83066091 AAACTTGTAC
* *
83066101 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
83066129 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
83066156 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
83066183 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:83072881 original size:46 final size:46
Alignment explanation
Indices: 83072830--83072958 Score: 156
Period size: 46 Copynumber: 2.8 Consensus size: 46
83072820 ATGGTTGAGC
*
83072830 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATGCAACAGG
* * * *
83072877 -TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAAC-AGG
83072922 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
83072959 GGGCGGGTTA
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.09
45 4 0.06
46 28 0.41
47 28 0.41
48 3 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAACAGG
Found at i:83076045 original size:29 final size:29
Alignment explanation
Indices: 83076012--83076143 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
83076002 GTGACGAGAT
83076012 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83076041 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
83076070 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
83076099 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
83076128 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83076144 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83083390 original size:29 final size:29
Alignment explanation
Indices: 83083357--83083488 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
83083347 GTGACGAGAT
83083357 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83083386 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
83083415 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
83083444 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
83083473 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83083489 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83087534 original size:29 final size:29
Alignment explanation
Indices: 83087502--83087577 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 29
83087492 GCTGGAAATA
* *
83087502 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
* * *
83087531 TATGGCACTATGTGTGCG-GCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
83087559 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
83087578 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 22 0.56
29 17 0.44
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:83094778 original size:29 final size:29
Alignment explanation
Indices: 83094745--83094876 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
83094735 GTGACGAGAT
83094745 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83094774 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
83094803 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
83094832 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
83094861 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83094877 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83103620 original size:20 final size:20
Alignment explanation
Indices: 83103597--83103635 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
83103587 GTTTGTTTGG
83103597 TTCAAGATT-TGTTTTATTTC
1 TTCAA-ATTGTGTTTTATTTC
*
83103617 TTCAATTTGTGTTTTATTT
1 TTCAAATTGTGTTTTATTT
83103636 TTATATGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.18, C:0.08, G:0.10, T:0.64
Consensus pattern (20 bp):
TTCAAATTGTGTTTTATTTC
Found at i:83103723 original size:8 final size:8
Alignment explanation
Indices: 83103710--83103735 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
83103700 TAAATTGTGT
83103710 AATATATA
1 AATATATA
83103718 AATATATA
1 AATATATA
83103726 AATATATA
1 AATATATA
83103734 AA
1 AA
83103736 AAGATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
AATATATA
Found at i:83106393 original size:30 final size:30
Alignment explanation
Indices: 83106359--83106418 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
83106349 ATTAACTTAG
83106359 TATCACCCCATAACTCAATGAGTTAAAATT
1 TATCACCCCATAACTCAATGAGTTAAAATT
*
83106389 TATCACCCCGTAACTCAATGAGTTAAAATT
1 TATCACCCCATAACTCAATGAGTTAAAATT
83106419 ATTATACTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.30
Consensus pattern (30 bp):
TATCACCCCATAACTCAATGAGTTAAAATT
Found at i:83112242 original size:28 final size:26
Alignment explanation
Indices: 83112211--83112274 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
83112201 AATTACTATA
* *
83112211 ATACCCCTACGTATGGAAAATTACTGCT
1 ATACCCCTA-G-ATGCAAAATTACCGCT
* *
83112239 ATACCCCTAGGTGCAAAATTACCGTT
1 ATACCCCTAGATGCAAAATTACCGCT
83112265 ATACCCCTAG
1 ATACCCCTAG
83112275 GGTTAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCGCT
Found at i:83112437 original size:27 final size:25
Alignment explanation
Indices: 83112379--83112538 Score: 149
Period size: 27 Copynumber: 6.0 Consensus size: 25
83112369 AGGAAGCGTC
* *
83112379 CTGGTGGCTATGCCACAATTTATCTAAT
1 CTGGTGGCTCTGCCACAA--TATCT-GT
83112407 CTGGTGGCTCTGCCACATATATCTGT
1 CTGGTGGCTCTGCCACA-ATATCTGT
* *
83112433 CCTGGTGCCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAA-TATCTG-T
83112461 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTG-T
*
83112488 CTAGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG--T
* * *
83112515 CTGGTGACTCCGTCACAATATCTG
1 CTGGTGGCTCTGCCACAATATCTG
83112539 GCAGCCTCGC
Statistics
Matches: 113, Mismatches: 13, Indels: 13
0.81 0.09 0.09
Matches are distributed among these distances:
26 9 0.08
27 85 0.75
28 18 0.16
29 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (25 bp):
CTGGTGGCTCTGCCACAATATCTGT
Found at i:83112474 original size:54 final size:54
Alignment explanation
Indices: 83112376--83112538 Score: 222
Period size: 54 Copynumber: 3.0 Consensus size: 54
83112366 TGGAGGAAGC
*
83112376 GTCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATCT
*
83112431 GTCCTGGTGCCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * * * *
83112485 GTTCTAGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTCCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCT
83112538 G
1 G
83112539 GCAGCCTCGC
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 13 0.13
54 65 0.66
55 20 0.20
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:83112532 original size:81 final size:81
Alignment explanation
Indices: 83112379--83112538 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 81
83112369 AGGAAGCGTC
* * *
83112379 CTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGCCTA
1 CTGGTGGCTATGCCACAATATATCTAATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGACTA
*
83112444 TGCCACAATTATCTGAT
66 CGCCACAA-TATCTGAT
* ** *
83112461 CTGGTGGCTCTGCCAC-ATATATCTGTTCTAGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAATATATCTAATCTAGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
* *
83112524 CCGTCACAATATCTG
65 ACGCCACAATATCTG
83112539 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 14 0.21
81 38 0.57
82 15 0.22
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATATATCTAATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGACTA
CGCCACAATATCTGAT
Found at i:83116167 original size:28 final size:28
Alignment explanation
Indices: 83116056--83116156 Score: 130
Period size: 28 Copynumber: 3.6 Consensus size: 28
83116046 AACTATGTAC
* * * *
83116056 GGCAGTTAATGTGCAAGATATCGAGTGT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
*
83116084 GGCACTTAGTGTGCGAGATATCGAGTGT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
* *
83116112 GGCACTTACTGTGAGAGATATCGAGTAT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
*
83116140 GGAACTTAGTGTGCGAG
1 GGCACTTAGTGTGCGAG
83116157 GCATTGAGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.26, C:0.13, G:0.34, T:0.28
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGATATCGAGTAT
Found at i:83121279 original size:46 final size:46
Alignment explanation
Indices: 83121145--83121413 Score: 201
Period size: 47 Copynumber: 5.7 Consensus size: 46
83121135 GTTATTGTGG
* *
83121145 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGAGA
* * * * *
83121191 GCCAGTGTAAGACCATGTTTGGGACAAGACATCGG-CATCGAGATGGGT
1 GCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCA-CGAGATGAGA
*
83121239 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-AGA
* * * * *
83121285 GCCT-GTGTAAGACATGTCTAGGACTTGCATCGACTACGAGATGATA
1 G-CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGA
* ** *
83121331 G-TCAGTGTAAGACCATGTTTGGGACATGGCATC-AACATGAGAT-ATGA
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAGATGA-GA
* * *
83121378 GCTATTGTAAGACCGTGTCTGCGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
83121414 ACCTTACCCA
Statistics
Matches: 177, Mismatches: 31, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 70 0.40
47 77 0.44
48 27 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGA
Found at i:83121404 original size:140 final size:141
Alignment explanation
Indices: 83121149--83121413 Score: 331
Period size: 140 Copynumber: 1.9 Consensus size: 141
83121139 TTGTGGGCTA
* *
83121149 GTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGGG
1 GTGTAAGACATGTCTAGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATGTTTGGG
** * * *
83121214 ACAAGACATCGGCATCGAGATGGGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCCCGA
66 ACAAGACATCAACATCGAGATAGGAGCTAGTGTAAGACATGTCTGCGACATGGCATCGGCCCCGA
83121278 GATGTAAGCCT
131 GATGTAAGCCT
* * * *
83121289 GTGTAAGACATGTCTAGGACTTGCATC-GACTACGA-GATGATAGTCAGTGTAAGACCATGTTTG
1 GTGTAAGACATGTCTAGGACATGCATCAG-CCAC-ATGATGAGAGCCAGTGTAAGACCATGTTTG
* * * * *
83121352 GGACATGGCATCAACAT-GAGATATGAGCTATTGTAAGACCGTGTCTGCGACATGGCATCGGC
64 GGACAAGACATCAACATCGAGATAGGAGCTAGTGTAAGA-CATGTCTGCGACATGGCATCGGC
83121414 ACCTTACCCA
Statistics
Matches: 105, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
139 18 0.17
140 78 0.74
141 9 0.09
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (141 bp):
GTGTAAGACATGTCTAGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATGTTTGGG
ACAAGACATCAACATCGAGATAGGAGCTAGTGTAAGACATGTCTGCGACATGGCATCGGCCCCGA
GATGTAAGCCT
Found at i:83126038 original size:70 final size:71
Alignment explanation
Indices: 83125887--83126049 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
83125877 GAGATGTATC
83125887 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
83125952 AGGACA
66 AGGACA
83125958 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
83126022 CGGACA
66 AGGACA
83126028 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
83126050 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:83133491 original size:41 final size:41
Alignment explanation
Indices: 83133446--83133563 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
83133436 TGAAAGATAA
83133446 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
83133487 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
83133517 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
83133558 ATGTAG
1 ATGTAG
83133564 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:83133502 original size:71 final size:71
Alignment explanation
Indices: 83133414--83133577 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
83133404 GAGATGTATC
83133414 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
83133479 AGGACA
66 AGGACA
83133485 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
83133550 AGGACA
66 AGGACA
83133556 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
83133578 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:83140819 original size:46 final size:46
Alignment explanation
Indices: 83140752--83140925 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
83140742 TGTAACCCGC
*
83140752 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
83140798 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
83140848 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
83140890 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
83140926 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:83140918 original size:92 final size:93
Alignment explanation
Indices: 83140760--83140930 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
83140750 GCCCATAAGT
* *
83140760 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
83140825 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
83140853 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
83140917 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
83140931 CAAATATCCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 47 0.63
93 28 0.37
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:83143349 original size:29 final size:29
Alignment explanation
Indices: 83143310--83143397 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
83143300 CAAAGATAAC
*
83143310 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
83143339 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
83143368 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
83143398 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:83143368 original size:15 final size:15
Alignment explanation
Indices: 83143310--83143388 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
83143300 CAAAGATAAC
*
83143310 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
83143324 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
83143339 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
83143353 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
83143368 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
83143383 AAGAAA
1 AAGAAA
83143389 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:83143397 original size:15 final size:15
Alignment explanation
Indices: 83143321--83143397 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
83143311 AGAAAACCGA
83143321 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
83143336 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
83143350 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
83143364 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
83143380 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
83143395 ATA
1 ATA
83143398 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:83146449 original size:93 final size:93
Alignment explanation
Indices: 83146337--83146509 Score: 312
Period size: 93 Copynumber: 1.9 Consensus size: 93
83146327 CGCCCATAAG
*
83146337 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
83146401 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
83146430 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83146495 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
83146510 CAAATATCCC
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
92 2 0.03
93 75 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83146503 original size:46 final size:46
Alignment explanation
Indices: 83146330--83146505 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
83146320 TGTAACCCGC
* *
83146330 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
83146376 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
83146426 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
83146469 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
83146506 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83155876 original size:20 final size:19
Alignment explanation
Indices: 83155851--83155893 Score: 77
Period size: 19 Copynumber: 2.2 Consensus size: 19
83155841 TTAGAAGAAG
83155851 TTTTTTTGCTTCCATTTAAA
1 TTTTTTT-CTTCCATTTAAA
83155871 TTTTTTTCTTCCATTTAAA
1 TTTTTTTCTTCCATTTAAA
83155890 TTTT
1 TTTT
83155894 CAATTTGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.19, C:0.14, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTTTTCTTCCATTTAAA
Found at i:83158038 original size:19 final size:19
Alignment explanation
Indices: 83158014--83158061 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
83158004 ATATATTTTC
83158014 ATTTTAGGATTTTTTC-ATA
1 ATTTTA-GATTTTTTCTATA
*
83158033 ATTTTATATTTTTTCTATA
1 ATTTTAGATTTTTTCTATA
*
83158052 TTTTTA-ATTT
1 ATTTTAGATTT
83158062 ATTTAAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (19 bp):
ATTTTAGATTTTTTCTATA
Found at i:83158045 original size:18 final size:18
Alignment explanation
Indices: 83158022--83158061 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
83158012 TCATTTTAGG
83158022 ATTTTTTC-ATAATTTTA
1 ATTTTTTCTATAATTTTA
*
83158039 TATTTTTTCTATATTTTTA
1 -ATTTTTTCTATAATTTTA
83158058 ATTT
1 ATTT
83158062 ATTTAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (18 bp):
ATTTTTTCTATAATTTTA
Found at i:83159269 original size:27 final size:27
Alignment explanation
Indices: 83159215--83159269 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
83159205 AAAAAATTTT
*
83159215 AAAATATAAATTTTAAAATTTTTATAA
1 AAAATATAAATTTTAAAATTATTATAA
83159242 AAAAT-TAAATATTTAAAAATTATT-TAA
1 AAAATATAAAT-TTT-AAAATTATTATAA
83159269 A
1 A
83159270 TTTTTTATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 5 0.20
27 12 0.48
28 8 0.32
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
AAAATATAAATTTTAAAATTATTATAA
Found at i:83169437 original size:46 final size:46
Alignment explanation
Indices: 83169365--83169493 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
83169355 TGTAACCCGC
* * *
83169365 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
83169411 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
83169457 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83169494 TGCCCAAATA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83173494 original size:20 final size:19
Alignment explanation
Indices: 83173446--83173542 Score: 90
Period size: 20 Copynumber: 5.0 Consensus size: 19
83173436 AAATAATAAG
* *
83173446 TATCAATACCTTGAAAATTA
1 TATCAATACCAT-AAAATTT
** *
83173466 TATTGATACCTATTAAATTT
1 TATCAATACC-ATAAAATTT
83173486 TATCAATACCA-AAAATTT
1 TATCAATACCATAAAATTT
*
83173504 ATATCAATACCAGTAAAATTA
1 -TATCAATACCA-TAAAATTT
83173525 TATCAATACCA-AAAATTT
1 TATCAATACCATAAAATTT
83173543 GCATTCTACT
Statistics
Matches: 63, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
18 12 0.19
19 12 0.19
20 32 0.51
21 7 0.11
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.36
Consensus pattern (19 bp):
TATCAATACCATAAAATTT
Found at i:83173510 original size:19 final size:19
Alignment explanation
Indices: 83173480--83173542 Score: 94
Period size: 20 Copynumber: 3.3 Consensus size: 19
83173470 GATACCTATT
83173480 AAATTT-TATCAATACCAA
1 AAATTTATATCAATACCAA
83173498 AAATTTATATCAATACCAGTA
1 AAATTTATATCAATACCA--A
83173519 AAA-TTATATCAATACCAA
1 AAATTTATATCAATACCAA
83173537 AAATTT
1 AAATTT
83173543 GCATTCTACT
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
18 10 0.24
19 13 0.32
20 14 0.34
21 4 0.10
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (19 bp):
AAATTTATATCAATACCAA
Found at i:83187863 original size:150 final size:150
Alignment explanation
Indices: 83187592--83187896 Score: 574
Period size: 150 Copynumber: 2.0 Consensus size: 150
83187582 GGAATTGTTG
*
83187592 TTAAGTTAAAATATAAAATTCATGTTGGGAATTTTTGTTTGCACTTCAAAAAATAGTTTCAGCAT
1 TTAAGTTAAAACATAAAATTCATGTTGGGAATTTTTGTTTGCACTTCAAAAAATAGTTTCAGCAT
83187657 TTGGTATCAATACTGATACCATTTTATTGATACTTTCTGAAAAATATCAATACTTATTTTCAAAG
66 TTGGTATCAATACTGATACCATTTTATTGATACTTTCTGAAAAATATCAATACTTATTTTCAAAG
83187722 AATTGATACTCATAGGACTT
131 AATTGATACTCATAGGACTT
83187742 TTAAGTTAAAACATAAAATTCATGTTGGGAATTTTTGTTTGCACTTCAAAAAATAGTTTCAGCAT
1 TTAAGTTAAAACATAAAATTCATGTTGGGAATTTTTGTTTGCACTTCAAAAAATAGTTTCAGCAT
* *
83187807 TTGGTATCAATATTGATACCATTTTATTGATACTTTCTGAAAAATATCGATACTTATTTTCAAAG
66 TTGGTATCAATACTGATACCATTTTATTGATACTTTCTGAAAAATATCAATACTTATTTTCAAAG
*
83187872 CATTGATACTCATAGGACTT
131 AATTGATACTCATAGGACTT
83187892 TTAAG
1 TTAAG
83187897 ATACCTGCAG
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 151 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (150 bp):
TTAAGTTAAAACATAAAATTCATGTTGGGAATTTTTGTTTGCACTTCAAAAAATAGTTTCAGCAT
TTGGTATCAATACTGATACCATTTTATTGATACTTTCTGAAAAATATCAATACTTATTTTCAAAG
AATTGATACTCATAGGACTT
Found at i:83188376 original size:271 final size:270
Alignment explanation
Indices: 83187822--83188363 Score: 949
Period size: 271 Copynumber: 2.0 Consensus size: 270
83187812 ATCAATATTG
* * *
83187822 ATACCATTTTATTGATACTTTCTGAAAAATATCGATACTTATTTTCAAAGCATTGATACTCATAG
1 ATACCATTTTATTGATACTTTCTAAAAAATATCGATACTTATTTTAAAAGCATTGATACCCATAG
* * * *
83187887 GACTTTTAAGATACCTGCAGCGCGTTTTTCAACTAAACCCTAAATTTTTTCCCTTTTTTAGAATC
66 GACTTTTAAGATACCTGCAGCACGTTTTTCAACTAAACCCTAAATTTTTTCCCTTTTTCAAAACC
*
83187952 CTCTCAACCCACTCTTCAAAAATTTCAATTTCTTTTTCTTTGCTTTAAAAACTTGACTCAAGTCA
131 CTCTCAACCCACTCTTCAAAAATTTCAATTTCTTCTTCTTTGCTTTAAAAACTTGACTCAAGTCA
* *
83188017 ACCTACGTTATCATTTTCTACAAAGATTTTAAAAGTTTGCTCTCCACTTTCACACCTTTAAAGCA
196 ACCTACATTATCATTTTCTACAAAGATTCTAAAAGTTTGCTCTCCACTTTCACACCTTTAAAGCA
83188082 ATTTCGAGGT
261 ATTTCGAGGT
83188092 ATACCATTTTATTGATACTTTCTAAAAAATATCGATACTTATTTTAAAAGCATTGATACCCATAG
1 ATACCATTTTATTGATACTTTCTAAAAAATATCGATACTTATTTTAAAAGCATTGATACCCATAG
* *
83188157 GACTTTTAAGATACCTGCAGTATGTTTTTCAACTAAACCCTAAATTTTTTTCCCTTTTTCAAAAC
66 GACTTTTAAGATACCTGCAGCACGTTTTTCAACTAAACCCTAAA-TTTTTTCCCTTTTTCAAAAC
*
83188222 CCTCTCAACCCACTCTTCAAAAATTTCAATTTCTTCTTCTTTTCTTTAAAAACTTGACTCAAGTC
130 CCTCTCAACCCACTCTTCAAAAATTTCAATTTCTTCTTCTTTGCTTTAAAAACTTGACTCAAGTC
*
83188287 AACCTACATTATCATTTTCTACAAAGATTCTAAAAGTTTTCTCTCCACTTTCACACCTTTAAAGC
195 AACCTACATTATCATTTTCTACAAAGATTCTAAAAGTTTGCTCTCCACTTTCACACCTTTAAAGC
83188352 AATTTCGAGGT
260 AATTTCGAGGT
83188363 A
1 A
83188364 ATTTTTTTTA
Statistics
Matches: 257, Mismatches: 14, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
270 103 0.40
271 154 0.60
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (270 bp):
ATACCATTTTATTGATACTTTCTAAAAAATATCGATACTTATTTTAAAAGCATTGATACCCATAG
GACTTTTAAGATACCTGCAGCACGTTTTTCAACTAAACCCTAAATTTTTTCCCTTTTTCAAAACC
CTCTCAACCCACTCTTCAAAAATTTCAATTTCTTCTTCTTTGCTTTAAAAACTTGACTCAAGTCA
ACCTACATTATCATTTTCTACAAAGATTCTAAAAGTTTGCTCTCCACTTTCACACCTTTAAAGCA
ATTTCGAGGT
Found at i:83191187 original size:72 final size:72
Alignment explanation
Indices: 83191108--83191296 Score: 236
Period size: 72 Copynumber: 2.6 Consensus size: 72
83191098 TATGTAATGT
* * ** * *
83191108 GGGTCCGGGTACTGACTTTATGTATAAATCCATGAGTAACTCGCTGAGCGAGCA-TATCATGCTA
1 GGGTCCGGGTACTGACTTTGTGTATAAACCCATGAGTAACTCAATGAGCGAACATTA-CATGATA
83191172 ATGCTTTC
65 ATGCTTTC
* *
83191180 GGGTCCGGGTACTGACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGAACATTACATGATAA
1 GGGTCCGGGTACTGACTTTGTGTATAAACCCATGAGTAACTCAATGAGCGAACATTACATGATAA
*
83191245 TGCTTTG
66 TGCTTTC
* * * * *
83191252 GGGTCCGGGTGCTGACTTTGTGTACAGACCTATGAGTAGCTCAAT
1 GGGTCCGGGTACTGACTTTGTGTATAAACCCATGAGTAACTCAAT
83191297 TGCGGGCATT
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
72 100 0.98
73 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (72 bp):
GGGTCCGGGTACTGACTTTGTGTATAAACCCATGAGTAACTCAATGAGCGAACATTACATGATAA
TGCTTTC
Found at i:83195529 original size:28 final size:28
Alignment explanation
Indices: 83195497--83195566 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
83195487 ATAGTAAGTC
83195497 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
83195525 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
83195553 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83195567 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:83198991 original size:17 final size:18
Alignment explanation
Indices: 83198969--83199002 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
83198959 GCCCAACCTG
83198969 GGCGTGTGGG-CCACATC
1 GGCGTGTGGGTCCACATC
83198986 GGCGTGTGGGTCCACAT
1 GGCGTGTGGGTCCACAT
83199003 TGGCAAACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.12, C:0.26, G:0.41, T:0.21
Consensus pattern (18 bp):
GGCGTGTGGGTCCACATC
Found at i:83201087 original size:40 final size:40
Alignment explanation
Indices: 83201004--83201211 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
83200994 CGGGATTTAA
* * * * * *
83201004 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
83201044 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * *
83201084 CCGGATTTGGCAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
83201124 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
83201164 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
83201204 CCGGATAT
1 CCGGATAT
83201212 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:83208593 original size:11 final size:11
Alignment explanation
Indices: 83208557--83208612 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
83208547 CATGGTATGT
83208557 ATGATATGCAC
1 ATGATATGCAC
* *
83208568 ATGACATG--T
1 ATGATATGCAC
83208577 ATGATATGCAC
1 ATGATATGCAC
*
83208588 ATGATATG--T
1 ATGATATGCAC
83208597 ATGATATGCAC
1 ATGATATGCAC
83208608 ATGAT
1 ATGAT
83208613 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:83208612 original size:20 final size:20
Alignment explanation
Indices: 83208546--83208612 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
83208536 ATTTTGATAA
*
83208546 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
83208566 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
83208586 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
83208606 ACATGAT
1 ACATGAT
83208613 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Done.