Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 268 of 433
Found at i:83511168 original size:21 final size:21
Alignment explanation
Indices: 83511142--83511183 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
83511132 TCTCAATTTA
83511142 TAATCCCTATAAATAATATCT
1 TAATCCCTATAAATAATATCT
*
83511163 TAATCCCTGTAAATAATATCT
1 TAATCCCTATAAATAATATCT
83511184 CAAAATAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.38
Consensus pattern (21 bp):
TAATCCCTATAAATAATATCT
Found at i:83512830 original size:29 final size:29
Alignment explanation
Indices: 83512785--83512900 Score: 112
Period size: 29 Copynumber: 4.0 Consensus size: 29
83512775 TACCTGTATC
* *
83512785 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCAAATTCATA
* **
83512813 TGGCCCCTTTAGGCCCAAATCACCTGT-ATA
1 TGG-CCCATTAGGCCCAAATCAAAT-TCATA
* *
83512843 TGGCCCATTAGGCCCAAATAAAATTTATA
1 TGGCCCATTAGGCCCAAATCAAATTCATA
* *
83512872 TGGCCCGTTAGGCCC-AGTCAAATTCATA
1 TGGCCCATTAGGCCCAAATCAAATTCATA
83512900 T
1 T
83512901 TCATGCTCAT
Statistics
Matches: 72, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 15 0.21
29 44 0.61
30 12 0.17
31 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCAAATTCATA
Found at i:83512847 original size:58 final size:58
Alignment explanation
Indices: 83512776--83512887 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
83512766 AAATTCACAT
* * * *
83512776 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCCTTTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATAAAATTCATATGG-CCCGTTAGGCCCAAATC
* *
83512834 ACCTGTATATGGCCCATTAGGCCCAAATAAAATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATAAAATTCATATGGCCCGTTAGGCCCA
83512888 GTCAAATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 34 0.72
59 13 0.28
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATAAAATTCATATGGCCCGTTAGGCCCAAATC
Found at i:83516356 original size:39 final size:38
Alignment explanation
Indices: 83516281--83516434 Score: 209
Period size: 39 Copynumber: 3.9 Consensus size: 38
83516271 CCGCACAAAC
* *
83516281 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCAC-ACTTGCACAATT
*
83516321 GCCTTCGGGCTTAGCCCGGATATCATAGCTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACA-CTTGCACAATT
*
83516360 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACACTT-GCACAATT
* *
83516399 GCCTTTGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCACACTT-GCACA
83516435 TTCATTCACA
Statistics
Matches: 106, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
38 3 0.03
39 94 0.89
40 9 0.08
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (38 bp):
GCCTTCGGGCTTAGCCCGGATATCACACTTGCACAATT
Found at i:83516434 original size:78 final size:80
Alignment explanation
Indices: 83516272--83516434 Score: 242
Period size: 78 Copynumber: 2.1 Consensus size: 80
83516262 TATGGTAACC
83516272 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
* *
83516337 CGGATATCATAGCTT
66 CGGATATCACAGATT
** * * *
83516352 -GCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTTGGGCTTAGCC
1 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
83516415 CGGATATCACA-ATT
66 CGGATATCACAGATT
83516429 CGCACA
1 CGCACA
83516435 TTCATTCACA
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
77 2 0.03
78 58 0.77
79 15 0.20
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (80 bp):
CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCACAGATT
Found at i:83520650 original size:28 final size:29
Alignment explanation
Indices: 83520618--83520733 Score: 112
Period size: 29 Copynumber: 4.0 Consensus size: 29
83520608 TGCCTGTATC
* *
83520618 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCAAATTCATA
* **
83520646 TGGCCCCTTTAGGCCCAAATCACCTGT-ATA
1 TGG-CCCATTAGGCCCAAATCAAAT-TCATA
*
83520676 TGGCCCATTAGGCCCAAATCAAATTTATA
1 TGGCCCATTAGGCCCAAATCAAATTCATA
** *
83520705 TGGCCTGTTAGGCCC-AGTCAAATTCATA
1 TGGCCCATTAGGCCCAAATCAAATTCATA
83520733 T
1 T
83520734 TCATGCTCAT
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
28 16 0.22
29 44 0.60
30 12 0.16
31 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCAAATTCATA
Found at i:83520716 original size:58 final size:57
Alignment explanation
Indices: 83520610--83520720 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 57
83520600 AATTCACATG
* *
83520610 CCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCCTTTAGGCCCAAATCA
1 CCTGTATATGGCCCATTAAGCCCAATCAAATTCATATGG-CCCTTTAGGCCCAAATCA
* *
83520668 CCTGTATATGGCCCATTAGGCCCAAATCAAATTTATATGG-CCTGTTAGGCCCA
1 CCTGTATATGGCCCATTAAGCCC-AATCAAATTCATATGGCCCT-TTAGGCCCA
83520721 GTCAAATTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
57 3 0.06
58 30 0.64
59 14 0.30
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (57 bp):
CCTGTATATGGCCCATTAAGCCCAATCAAATTCATATGGCCCTTTAGGCCCAAATCA
Found at i:83524850 original size:26 final size:25
Alignment explanation
Indices: 83524807--83524861 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
83524797 ACATTCAACA
*
83524807 CTTAGGGGTATTTTGGTAATTTTACC
1 CTTAGGGGTATTTCGGTAATTTT-CC
*
83524833 CTTAGGGG-AGTTTCGGTAGTTTTCC
1 CTTAGGGGTA-TTTCGGTAATTTTCC
83524858 CTTA
1 CTTA
83524862 ATTATGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.16, C:0.15, G:0.25, T:0.44
Consensus pattern (25 bp):
CTTAGGGGTATTTCGGTAATTTTCC
Found at i:83526495 original size:66 final size:68
Alignment explanation
Indices: 83526419--83526605 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
83526409 TAGTACCACT
*
83526419 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
83526481 CACG
65 CACG
83526485 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
83526550 ATCACG
63 ATCACG
83526556 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
83526606 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:83526530 original size:71 final size:71
Alignment explanation
Indices: 83526442--83526605 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
83526432 CGATTTGTCT
83526442 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83526507 CTTTCA
66 CTTTCA
83526513 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83526578 CTTTCA
66 CTTTCA
83526584 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
83526606 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:83526643 original size:71 final size:70
Alignment explanation
Indices: 83526442--83526639 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
83526432 CGATTTGTCT
* * *
83526442 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
83526507 CTTTCA
65 CTTTCA
* * *
83526513 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
83526578 CTTTCA
65 CTTTCA
* *
83526584 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
83526640 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:83534065 original size:66 final size:68
Alignment explanation
Indices: 83533989--83534175 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
83533979 TAGTACCACT
*
83533989 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
83534051 CACG
65 CACG
83534055 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
83534120 ATCACG
63 ATCACG
83534126 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
83534176 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:83534100 original size:71 final size:71
Alignment explanation
Indices: 83534012--83534175 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
83534002 CGATTTGTCT
83534012 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83534077 CTTTCA
66 CTTTCA
83534083 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83534148 CTTTCA
66 CTTTCA
83534154 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
83534176 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:83534213 original size:71 final size:70
Alignment explanation
Indices: 83534012--83534209 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
83534002 CGATTTGTCT
* * *
83534012 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
83534077 CTTTCA
65 CTTTCA
* * *
83534083 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
83534148 CTTTCA
65 CTTTCA
* *
83534154 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
83534210 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:83535560 original size:29 final size:30
Alignment explanation
Indices: 83535479--83535562 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 30
83535469 GTATCTGGCA
* *
83535479 CATTAAGCCC-AATCATATTCATATGGCCC
1 CATTACGCCCAAATCATATTTATATGGCCC
* * ** *
83535508 CTTTAGGCCCAAATCACCTGTATATGG-CC
1 CATTACGCCCAAATCATATTTATATGGCCC
*
83535537 CATTACGCCTAAATCATATTTATATG
1 CATTACGCCCAAATCATATTTATATG
83535563 ACCCGTTGGG
Statistics
Matches: 42, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
29 30 0.71
30 12 0.29
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (30 bp):
CATTACGCCCAAATCATATTTATATGGCCC
Found at i:83535575 original size:58 final size:58
Alignment explanation
Indices: 83535464--83535576 Score: 138
Period size: 58 Copynumber: 1.9 Consensus size: 58
83535454 CGGGTTGTCA
* * * *
83535464 CACCTGTATCTGGCACATTAAGCCCAATCATATTCATATGGCCCCTTTAGGCCCAAAT
1 CACCTGTATATGGCACATTAAGCCAAATCATATTCATATGGACCCGTTAGGCCCAAAT
* * * *
83535522 CACCTGTATATGGCCCATTACGCCTAAATCATATTTATAT-GACCCGTTGGGCCCA
1 CACCTGTATATGGCACATTAAGCC-AAATCATATTCATATGGACCCGTTAGGCCCA
83535577 GCCACACATA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
58 33 0.72
59 13 0.28
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (58 bp):
CACCTGTATATGGCACATTAAGCCAAATCATATTCATATGGACCCGTTAGGCCCAAAT
Found at i:83536955 original size:46 final size:46
Alignment explanation
Indices: 83536880--83537054 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
83536870 CACTCTCATA
* * *
83536880 GCCGGTGCATGTCCCAGACATGTCGTACACTGGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
* * * * *
83536926 GCCGAAGCATGTCCTAGACATGTCTTACACTAGC--ACTTGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTAC--ATCTCGAG
* * *
83536972 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCT-CATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGAG
83537020 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
83537055 CACCCAAATG
Statistics
Matches: 106, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
44 2 0.02
46 54 0.51
47 27 0.25
48 21 0.20
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
Found at i:83540483 original size:40 final size:40
Alignment explanation
Indices: 83540425--83540632 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
83540415 TGAATGATAC
* *
83540425 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
83540465 CCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
83540505 CCAGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
83540545 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
83540585 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
83540625 CC-GGCTAA
1 CCGGGCTAA
83540633 ATTCCGAAGA
Statistics
Matches: 142, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 6 0.04
40 134 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:83545540 original size:18 final size:19
Alignment explanation
Indices: 83545517--83545552 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
83545507 ATTGCAATTT
83545517 AATTTT-TTTTAATTACTA
1 AATTTTCTTTTAATTACTA
*
83545535 AATTTTCTTTTATTTACT
1 AATTTTCTTTTAATTACT
83545553 TCTAGCAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (19 bp):
AATTTTCTTTTAATTACTA
Found at i:83550171 original size:71 final size:71
Alignment explanation
Indices: 83550087--83550250 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
83550077 CGATTTGTCT
83550087 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83550152 CTTTCA
66 CTTTCA
83550158 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83550223 CTTTCA
66 CTTTCA
*
83550229 CGTAGCTTTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
83550251 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:83550288 original size:71 final size:70
Alignment explanation
Indices: 83550087--83550284 Score: 231
Period size: 71 Copynumber: 2.8 Consensus size: 70
83550077 CGATTTGTCT
* * * * *
83550087 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATACGACCTAGCTACATTTAT
83550152 CTTTCA
65 CTTTCA
* * * * *
83550158 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATACGACCTAGCTACATTTAT
83550223 CTTTCA
65 CTTTCA
* * *
83550229 CGTAGCTTTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATATGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATACGACCTAGCTAC
83550285 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 21 0.18
69 1 0.01
70 1 0.01
71 95 0.81
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATACGACCTAGCTACATTTATC
TTTCA
Found at i:83561045 original size:11 final size:11
Alignment explanation
Indices: 83561029--83561054 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
83561019 CCTATTTCAT
83561029 GATCCTCCATG
1 GATCCTCCATG
83561040 GATCCTCCATG
1 GATCCTCCATG
83561051 GATC
1 GATC
83561055 ACTAGAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.35, G:0.19, T:0.27
Consensus pattern (11 bp):
GATCCTCCATG
Found at i:83561772 original size:37 final size:37
Alignment explanation
Indices: 83561719--83561809 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
83561709 TTATTACGAA
83561719 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
83561756 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
83561793 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
83561810 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:83561960 original size:49 final size:49
Alignment explanation
Indices: 83561905--83562222 Score: 507
Period size: 49 Copynumber: 6.5 Consensus size: 49
83561895 TTTTACATTA
83561905 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
*
83561954 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
*
83562003 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
*
83562052 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* *
83562101 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* * * *
83562150 GCCA-TACGGCCTTATCAC--ACATATGCACTTTCACATTCATCACATTG
1 GCCATTA-GGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* *
83562197 GCCATTCGGCCTTATCACACATATAT
1 GCCATTAGGCCTTATCACATATATAT
83562223 GTATATCATA
Statistics
Matches: 257, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
47 42 0.16
48 3 0.01
49 212 0.82
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
Found at i:83565800 original size:29 final size:29
Alignment explanation
Indices: 83565764--83566039 Score: 491
Period size: 29 Copynumber: 9.6 Consensus size: 29
83565754 TGTTGAAAAA
* *
83565764 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
* *
83565793 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
83565822 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
83565851 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
83565880 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
83565909 CT-GCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
83565937 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
83565966 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
83565995 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
83566024 CTCGCACACATAGTGC
1 CTCGCACACATAGTGC
83566040 TCGGTTAACG
Statistics
Matches: 242, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
28 28 0.12
29 214 0.88
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:83565955 original size:144 final size:145
Alignment explanation
Indices: 83565767--83566071 Score: 524
Period size: 144 Copynumber: 2.1 Consensus size: 145
83565757 TGAAAAACTC
83565767 GCACACACAGTGCCTCAATTACTGATCTCGCACACACAGTGCCTCAATTACTGATCTCGCACACA
1 GCACACACAGTGCCTCAATTACTGATCTCGCACACACAGTGCCTCAATTACTGATCTCGCACACA
83565832 TAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCC
66 TAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTG-C
*
83565897 TCGATT-ACTG-ATCT
130 TCGATTAACGGAATCT
* * * *
83565911 GCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCACACA
1 GCACACACAGTGCCTCAATTACTGATCTCGCACACACAGTGCCTCAATTACTGATCTCGCACACA
83565976 TAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCT
66 TAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCT
* *
83566041 CGGTTAACGGAATTT
131 CGATTAACGGAATCT
83566056 GCACACACAGTGCCTC
1 GCACACACAGTGCCTC
83566072 TAATCATTCG
Statistics
Matches: 151, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
143 6 0.04
144 127 0.84
145 18 0.12
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (145 bp):
GCACACACAGTGCCTCAATTACTGATCTCGCACACACAGTGCCTCAATTACTGATCTCGCACACA
TAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCT
CGATTAACGGAATCT
Found at i:83568176 original size:36 final size:37
Alignment explanation
Indices: 83568121--83568240 Score: 208
Period size: 36 Copynumber: 3.3 Consensus size: 37
83568111 TTATTACGAA
*
83568121 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
83568158 GTCTTA-CCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
83568194 GTCTTACCCGGTCAT-ATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
83568230 GTCTCACCCGG
1 GTCTTACCCGG
83568241 AACATATTCC
Statistics
Matches: 80, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
36 66 0.82
37 14 0.17
ACGTcount: A:0.21, C:0.33, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:83568402 original size:49 final size:49
Alignment explanation
Indices: 83568342--83568707 Score: 587
Period size: 49 Copynumber: 7.5 Consensus size: 49
83568332 TTTTACATTA
*
83568342 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
83568391 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
83568440 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
83568489 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
83568538 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT-G
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
83568586 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* * *
83568635 GCCA-TACGGCCTTATCAC--ACATATGCACTTTCACATTCATCACATTG
1 GCCATTA-GGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
83568682 GCCATTCGGCCTTATCACACATATAT
1 GCCATTAGGCCTTATCACATATATAT
83568708 GTATATCATA
Statistics
Matches: 305, Mismatches: 7, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
47 42 0.14
48 51 0.17
49 212 0.70
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:83572365 original size:46 final size:46
Alignment explanation
Indices: 83572315--83572626 Score: 352
Period size: 46 Copynumber: 6.7 Consensus size: 46
83572305 TGGTTGAGCA
83572315 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83572361 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
83572406 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
83572454 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83572500 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
83572545 CATCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83572593 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83572627 GGGGCGGGTT
Statistics
Matches: 224, Mismatches: 24, Indels: 36
0.79 0.08 0.13
Matches are distributed among these distances:
42 4 0.02
43 10 0.04
44 6 0.03
45 2 0.01
46 127 0.57
47 55 0.25
48 2 0.01
49 6 0.03
50 8 0.04
51 4 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83572471 original size:93 final size:93
Alignment explanation
Indices: 83572312--83572482 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
83572302 GGATGGTTGA
* *
83572312 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83572377 TGAGTCCGAGTTCGTAAGATGTAACTAG
66 TGAGTCCGAGTTCGTAAGATGTAACTAG
*
83572405 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83572470 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
83572483 ACTTATGGAT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTAAGATGTAACTAG
Found at i:83572546 original size:139 final size:139
Alignment explanation
Indices: 83572316--83572626 Score: 595
Period size: 139 Copynumber: 2.2 Consensus size: 139
83572306 GGTTGAGCAT
*
83572316 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
83572381 TCCGAGTTCGTAAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
66 TCCGAGTTCGTAAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
83572446 TGCGAACGC
131 TGCGAACGC
83572455 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
*
83572520 TCCGAGTTCGTAAGATGTAACTAGGCATCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGA
66 TCCGAGTTCGTAAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
83572585 TGCGAACGC
131 TGCGAACGC
*
83572594 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
83572627 GGGGCGGGTT
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
139 169 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (139 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
TCCGAGTTCGTAAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
TGCGAACGC
Found at i:83575662 original size:46 final size:45
Alignment explanation
Indices: 83575595--83575765 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 45
83575585 AACCCGCCCC
* * *
83575595 TAAGTGAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCA
* * *
83575641 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-TACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGTATCCA
* * ** *
83575687 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCA
83575734 TAAGTGAACT-GGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
83575766 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
45 24 0.24
46 40 0.40
47 33 0.33
48 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGTATCCA
Found at i:83575785 original size:45 final size:44
Alignment explanation
Indices: 83575643--83575785 Score: 123
Period size: 47 Copynumber: 3.1 Consensus size: 44
83575633 CGTATCCATA
83575643 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
83575690 CA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCG--GATGC-CAACCATCT
83575736 AGTGAACT-GGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
83575781 AGTGA
1 AGTGA
83575786 CATGTCACTT
Statistics
Matches: 77, Mismatches: 11, Indels: 17
0.73 0.10 0.16
Matches are distributed among these distances:
43 9 0.12
45 27 0.35
46 5 0.06
47 30 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:83576220 original size:30 final size:30
Alignment explanation
Indices: 83576186--83576242 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
83576176 ATTTAATATG
83576186 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
83576216 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
83576243 TTGGCTCGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:83580671 original size:21 final size:21
Alignment explanation
Indices: 83580647--83580728 Score: 67
Period size: 21 Copynumber: 3.8 Consensus size: 21
83580637 CTATGAACTA
83580647 TGTGATCTGAATTCATTGAGT
1 TGTGATCTGAATTCATTGAGT
* * *
83580668 TGTGGTCTGATTTCA-TGATAT
1 TGTGATCTGAATTCATTGA-GT
* *
83580689 ATGTGACATTTGAACTCATTGAGT
1 -TGTG--ATCTGAATTCATTGAGT
*
83580713 TGTGATCTAAATTCAT
1 TGTGATCTGAATTCAT
83580729 GATGTATGTG
Statistics
Matches: 45, Mismatches: 11, Indels: 10
0.68 0.17 0.15
Matches are distributed among these distances:
20 3 0.07
21 23 0.51
22 4 0.09
23 4 0.09
24 8 0.18
25 3 0.07
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.43
Consensus pattern (21 bp):
TGTGATCTGAATTCATTGAGT
Found at i:83580710 original size:45 final size:45
Alignment explanation
Indices: 83580654--83580739 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
83580644 CTATGTGATC
* * * *
83580654 TGAATTCATTGAGTTGTGGTCTGATTTCATGATATATGTGACATT
1 TGAACTCATTGAGTTGTGATCTAAATTCATGATATATGTGACATT
*
83580699 TGAACTCATTGAGTTGTGATCTAAATTCATGATGTATGTGA
1 TGAACTCATTGAGTTGTGATCTAAATTCATGATATATGTGA
83580740 TACATGTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.42
Consensus pattern (45 bp):
TGAACTCATTGAGTTGTGATCTAAATTCATGATATATGTGACATT
Found at i:83582898 original size:16 final size:16
Alignment explanation
Indices: 83582877--83582909 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
83582867 GAAAACAACT
83582877 AAAAAGG-GCTAAATTG
1 AAAAAGGTG-TAAATTG
83582893 AAAAAGGTGTAAATTG
1 AAAAAGGTGTAAATTG
83582909 A
1 A
83582910 GTGATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.52, C:0.03, G:0.24, T:0.21
Consensus pattern (16 bp):
AAAAAGGTGTAAATTG
Found at i:83583527 original size:42 final size:42
Alignment explanation
Indices: 83583461--83583620 Score: 126
Period size: 42 Copynumber: 3.7 Consensus size: 42
83583451 ATAAGTGATT
*
83583461 TCGTATAAGACCATGT-TTGAGACATGGCATCGATATGAGGTC
1 TCGTATAAGACCATGTCTAG-GACATGGCATCGATATGAGGTC
* * * *
83583503 TCGTATAAGACCATGTCTAGGACATGGCGTCGGTACCGATTCGAGAC
1 TCGTATAAGACCATGTCTAGGACATGGCATCGATA-TGA---G-GTC
* * * * *
83583550 TTCGTATAAGACCATATCTGGGATATGGCATCGATGTGTAGTTC
1 -TCGTATAAGACCATGTCTAGGACATGGCATCGATATG-AGGTC
* *
83583594 -CTTGTAAGACCATGTCTAGGACATGGC
1 TCGTATAAGACCATGTCTAGGACATGGC
83583621 TTTGGCTCCC
Statistics
Matches: 91, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
42 51 0.56
43 4 0.04
44 1 0.01
45 1 0.01
46 1 0.01
47 3 0.03
48 30 0.33
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (42 bp):
TCGTATAAGACCATGTCTAGGACATGGCATCGATATGAGGTC
Found at i:83585458 original size:63 final size:64
Alignment explanation
Indices: 83585378--83585560 Score: 194
Period size: 66 Copynumber: 2.8 Consensus size: 64
83585368 AGACATTATG
*
83585378 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
83585441 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
83585506 AA
63 AA
* * * *
83585508 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
83585561 CGAACTATAT
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 39 0.40
64 5 0.05
65 6 0.06
66 40 0.41
67 5 0.05
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:83600694 original size:34 final size:36
Alignment explanation
Indices: 83600612--83600702 Score: 107
Period size: 34 Copynumber: 2.6 Consensus size: 36
83600602 TTATGCATTG
*
83600612 CTGATATTG-TATTGAAATGGGCTAAGGCCCTCACA
1 CTGATATTGCTACTGAAATGGGCTAAGGCCCTCACA
* * * *
83600647 CTGTTATTACTACTGTAATGGGCTAAGG-TC-CACA
1 CTGATATTGCTACTGAAATGGGCTAAGGCCCTCACA
*
83600681 CTGATATTGCTACTGATATGGG
1 CTGATATTGCTACTGAAATGGG
83600703 GTTAAGCCAG
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
34 22 0.48
35 8 0.17
36 16 0.35
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (36 bp):
CTGATATTGCTACTGAAATGGGCTAAGGCCCTCACA
Found at i:83603234 original size:49 final size:49
Alignment explanation
Indices: 83603173--83603491 Score: 361
Period size: 49 Copynumber: 6.1 Consensus size: 49
83603163 ATGTATGAGA
*
83603173 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
83603222 TGTATATGTGTGATAAGGCCTAATGGCCGATTTGATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
83603271 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
** * * *
83603320 TGTATATGTGTGA-AAGTGTGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAA
1 TGTATATGTGTGATAA--G-GCCTA------AT--GGCC-GAT-G-TGATG-A----ATGTGAAA
83603384 GTG
47 GTG
*
83603387 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
83603436 TGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
83603485 TATATAT
1 TGTATAT
83603492 ATATGTGGCA
Statistics
Matches: 232, Mismatches: 18, Indels: 40
0.80 0.06 0.14
Matches are distributed among these distances:
48 2 0.01
49 171 0.74
50 1 0.00
51 3 0.01
54 4 0.02
55 1 0.00
56 2 0.01
57 5 0.02
59 6 0.03
60 2 0.01
61 1 0.00
62 4 0.02
65 3 0.01
66 1 0.00
67 24 0.10
68 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.32
Consensus pattern (49 bp):
TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:83603333 original size:18 final size:18
Alignment explanation
Indices: 83603310--83603350 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
83603300 ATGTGATGAA
83603310 TGTGAAAGTGTGTATATG
1 TGTGAAAGTGTGTATATG
83603328 TGTGAAAGTGTGTATATG
1 TGTGAAAGTGTGTATATG
83603346 TGTGA
1 TGTGA
83603351 TAAGGCCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (18 bp):
TGTGAAAGTGTGTATATG
Found at i:83603335 original size:67 final size:67
Alignment explanation
Indices: 83603261--83603399 Score: 269
Period size: 67 Copynumber: 2.1 Consensus size: 67
83603251 ATTTGATGAA
*
83603261 TGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATA
1 TGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTATA
83603326 TG
66 TG
83603328 TGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTATA
1 TGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTATA
83603393 TG
66 TG
83603395 TGTGA
1 TGTGA
83603400 TAAGGCCTAA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 71 1.00
ACGTcount: A:0.29, C:0.05, G:0.33, T:0.33
Consensus pattern (67 bp):
TGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTATA
TG
Found at i:83603340 original size:116 final size:116
Alignment explanation
Indices: 83603211--83603448 Score: 440
Period size: 116 Copynumber: 2.1 Consensus size: 116
83603201 GATGTGATGA
* *
83603211 ATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATTTGATGAATGTGAAAGTGTGTAT
1 ATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTAT
*
83603276 ATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATAT
66 ATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATAT
*
83603327 GTGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTAT
1 ATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTAT
83603392 ATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATAT
66 ATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATAT
83603443 ATGTGA
1 ATGTGA
83603449 TAAGGCCTAA
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 117 1.00
ACGTcount: A:0.30, C:0.06, G:0.32, T:0.32
Consensus pattern (116 bp):
ATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTAT
ATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATAT
Found at i:83603360 original size:165 final size:165
Alignment explanation
Indices: 83603173--83603491 Score: 575
Period size: 165 Copynumber: 1.9 Consensus size: 165
83603163 ATGTATGAGA
*
83603173 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTATATGTGTGATAA
* * * *
83603238 GGCCTAATGGCCGATTTGATGAATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACG
*
83603303 TGATGAATGTGAAAGTGTGTATATGTGTGAAAGTG
131 TGATGAATGTGAAAGTGTATATATGTGTGAAAGTG
*
83603338 TGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTATATGTGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTATATGTGTGATAA
83603403 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACG
83603468 TGATGAATGTGAAAGTGTATATAT
131 TGATGAATGTGAAAGTGTATATAT
83603492 ATATGTGGCA
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
165 147 1.00
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.32
Consensus pattern (165 bp):
TGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGTATATGTGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACG
TGATGAATGTGAAAGTGTATATATGTGTGAAAGTG
Found at i:83603530 original size:98 final size:96
Alignment explanation
Indices: 83603325--83603530 Score: 252
Period size: 98 Copynumber: 2.1 Consensus size: 96
83603315 AAGTGTGTAT
* * *
83603325 ATGTGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTGT
1 ATGTGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCAGACGTGATGAATGTGAAAGTGTAT
* * * * *
83603390 ATATGTGTGATAAGGCCTAATAGCCGATGTG
66 ATATATGTGACAAAGCCGAATAGCCAATGTG
*
83603421 ATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGT
1 ATG--TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCAGACGTGATGAATGTGAAAGTG-
* * *
83603486 ATATATATATGTGGCAAAGCCGAATGGCTAATGTG
63 -TATATATATGTGACAAAGCCGAATAGCCAATGTG
83603521 AATGT-TGAAA
1 -ATGTGTGAAA
83603531 CATGTGATTA
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
96 3 0.03
98 61 0.66
99 1 0.01
100 25 0.27
101 3 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCAGACGTGATGAATGTGAAAGTGTAT
ATATATGTGACAAAGCCGAATAGCCAATGTG
Found at i:83603617 original size:37 final size:36
Alignment explanation
Indices: 83603562--83603648 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
83603552 AACTTGGAAA
83603562 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
83603600 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
83603637 TATGTCCGGGTA
1 TATGTCCGGGTA
83603649 AGACTTCGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:83605217 original size:42 final size:43
Alignment explanation
Indices: 83605113--83605227 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
83605103 CCAATGTCAG
* * *
83605113 ATCCCAGATATGGTCTTACATGTAATCTCGTATTGATGACAAT
1 ATCCCAGATATGGTCTTACACGTAATCTCATATCGATGACAAT
* * * **
83605156 AGCCCAGCTATGGTTTTACACAAAATCTCATATCGATGAC-AT
1 ATCCCAGATATGGTCTTACACGTAATCTCATATCGATGACAAT
83605198 ATCCCAGATATGGTCTTACACGTAATCTCA
1 ATCCCAGATATGGTCTTACACGTAATCTCA
83605228 GTAACCTTAA
Statistics
Matches: 59, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (43 bp):
ATCCCAGATATGGTCTTACACGTAATCTCATATCGATGACAAT
Found at i:83606413 original size:31 final size:31
Alignment explanation
Indices: 83606375--83606445 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
83606365 AATCAAAATG
*
83606375 AGAATCAGATTTAGAATCAGGTGACAGAATC
1 AGAATCAGATTTAGAATCAGGTAACAGAATC
*
83606406 AGAATCAGATTTAGTATCAGGTAACAGAATC
1 AGAATCAGATTTAGAATCAGGTAACAGAATC
*
83606437 AAAATCAGA
1 AGAATCAGA
83606446 ATGTGAATGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.23
Consensus pattern (31 bp):
AGAATCAGATTTAGAATCAGGTAACAGAATC
Found at i:83606686 original size:27 final size:27
Alignment explanation
Indices: 83606584--83606685 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
83606574 GCTCAGTTAT
* *
83606584 CAGATATTGTGGCAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGAAA
83606611 CAGATATTGTGGCAGAGCCACCAG-AA
1 CAGATATTGTGGCAGAGCCACCAGAAA
* * *
83606637 TAGATATTTGTGGCATAGCCACTAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAGAAA
* *
83606665 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
83606686 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.09
27 52 0.80
28 7 0.11
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:83606888 original size:22 final size:21
Alignment explanation
Indices: 83606844--83606908 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
83606834 GCAAATACGT
*
83606844 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCAT-ATCAGG
*
83606866 TTGGCACAAAGCCATATGTAGG
1 TTGGCACAAAGCCATAT-CAGG
*
83606888 TT-ACTACAAAGCCATAATCAG
1 TTGGC-ACAAAGCCAT-ATCAG
83606909 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.08
22 31 0.86
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (21 bp):
TTGGCACAAAGCCATATCAGG
Found at i:83607666 original size:27 final size:27
Alignment explanation
Indices: 83607336--83607664 Score: 389
Period size: 27 Copynumber: 12.2 Consensus size: 27
83607326 GGGTAAAATG
* * * * *
83607336 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
83607362 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
83607389 GTAATTCTACCCTATAGGGGTGTTT-A
1 GTAATTCTACCCTACAGGGGTATTTCA
*
83607415 GGTAATTCTACCCTACAGGGGTATTGC-
1 -GTAATTCTACCCTACAGGGGTATTTCA
83607442 GATAATTCTACCCTACAGGGGTATTTC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
83607469 GATAATTCTACCCTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
83607497 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
83607524 GTAATTCTACCATATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
83607551 GTAATTCTACCCAACAGGGGTATTTCC
1 GTAATTCTACCCTACAGGGGTATTTCA
*
83607578 GTAATTCTACCCTACAGGGGTA-TTCTG
1 GTAATTCTACCCTACAGGGGTATTTC-A
* *
83607605 GTAATTCTACCATACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
83607632 GTATTTTTACCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
83607659 GTAATT
1 GTAATT
83607665 TTGTAAATCG
Statistics
Matches: 264, Mismatches: 32, Indels: 13
0.85 0.10 0.04
Matches are distributed among these distances:
26 18 0.07
27 242 0.92
28 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:83607678 original size:27 final size:27
Alignment explanation
Indices: 83607648--83607746 Score: 74
Period size: 27 Copynumber: 3.7 Consensus size: 27
83607638 TTACCCTATA
83607648 AGGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTATTTCAGTAATTTTGTAAATCG
*** * * *
83607675 AGGGTAAAACAATAATTCTGTAAATCA
1 AGGGTATTTCAGTAATTTTGTAAATCG
* * ** *
83607702 AAGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTGTAAATCG
*
83607729 AGGGTATTTTAGTAATTT
1 AGGGTATTTCAGTAATTT
83607747 CACAAATTAA
Statistics
Matches: 51, Mismatches: 19, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
26 3 0.06
27 48 0.94
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTGTAAATCG
Found at i:83607745 original size:54 final size:54
Alignment explanation
Indices: 83607695--83608067 Score: 493
Period size: 54 Copynumber: 7.0 Consensus size: 54
83607685 AATAATTCTG
* * * ** * *
83607695 TAAATCAAAGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTTAGTAATTTCA
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTA
* ** * **
83607749 CAAATTAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTA
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
*
83607803 CAAACC-AGGGTATTTTGGTAA-TTTACAAACCAGGGGTATTTTGGTAATTTTA
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
* * * *
83607855 TAAACAAAGGGTATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTG
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
*
83607909 TAAACCAAGGGT-TTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTA
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
* * * *
83607962 TAAACCAAAGGTATTTTAGTAATTTTACAAATCAGGGGTGTTTTGGTAATTTTA
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
*
83608016 TAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
83608068 GGTAAACTAA
Statistics
Matches: 283, Mismatches: 32, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
52 32 0.11
53 77 0.27
54 173 0.61
55 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (54 bp):
TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
Found at i:83607977 original size:107 final size:107
Alignment explanation
Indices: 83607695--83608067 Score: 493
Period size: 107 Copynumber: 3.5 Consensus size: 107
83607685 AATAATTCTG
* * * ** * * * * *
83607695 TAAATCAAAGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTTAGTAATTTCACAAATTAAGG
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTATAAA-CAAAG
* * **
83607759 GTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTA
64 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
*
83607803 CAAACC-AGGGTATTTTGGTAA-TTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGG
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA-GG
* *
83607866 TATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTG
65 TATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
*
83607909 TAAACCAAGGGT-TTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAAGG
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAA-CAAAGG
* *
83607973 TATTTTAGTAATTTTACAAATCAGGGGTGTTTTGGTAATTTTA
65 TATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
*
83608016 TAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
83608068 GGTAAACTAA
Statistics
Matches: 234, Mismatches: 25, Indels: 12
0.86 0.09 0.04
Matches are distributed among these distances:
105 2 0.01
106 81 0.35
107 106 0.45
108 45 0.19
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (107 bp):
TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGT
ATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
Found at i:83608074 original size:27 final size:27
Alignment explanation
Indices: 83607704--83608067 Score: 430
Period size: 27 Copynumber: 13.6 Consensus size: 27
83607694 GTAAATCAAA
* **
83607704 GGTACTTTGGTAATTTTACAAGTC-GAG
1 GGTATTTTGGTAATTTTACAAACCAG-G
* * ** *
83607731 GGTATTTTAGTAATTTCACAAATTAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
83607758 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
**
83607785 GGTATTTTAATAATTTTACAAACCA-G
1 GGTATTTTGGTAATTTTACAAACCAGG
83607811 GGTATTTTGGTAA-TTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
83607837 GGTATTTTGGTAATTTTATAAACAAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
* *
83607864 GGTATTTTAGTAATTTTACAAACCAGA
1 GGTATTTTGGTAATTTTACAAACCAGG
** *
83607891 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
83607918 GGT-TTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * **
83607944 GGTATTTTGGTGATTTTATAAACCAAA
1 GGTATTTTGGTAATTTTACAAACCAGG
* *
83607971 GGTATTTTAGTAATTTTACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
83607998 GGTGTTTTGGTAATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
83608025 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
83608052 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
83608068 GGTAAACTAA
Statistics
Matches: 282, Mismatches: 51, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
25 11 0.04
26 49 0.17
27 222 0.79
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:83610073 original size:6 final size:6
Alignment explanation
Indices: 83610043--83610136 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
83610033 AAGAAACATT
* * * *
83610043 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATTAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
83610092 ATCAGA ATCAGA ATTAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
83610137 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:83610102 original size:31 final size:31
Alignment explanation
Indices: 83610064--83610136 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
83610054 AATCAAAATG
*
83610064 AGAATCAGAATTAGAATCAGGTGACAGAATC
1 AGAATCAGAATTAGAATCAGGTAACAGAATC
*
83610095 AGAATCAGAATTAGTATCAGGTAACAGAATC
1 AGAATCAGAATTAGAATCAGGTAACAGAATC
*
83610126 AAAATCAGAAT
1 AGAATCAGAAT
83610137 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATTAGAATCAGGTAACAGAATC
Found at i:83610375 original size:27 final size:27
Alignment explanation
Indices: 83610273--83610374 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
83610263 GCTCAGTTAT
* *
83610273 CAGATATTGTGGCAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGAAA
83610300 CAGATATTGTGGCAGAGCCACCAG-AA
1 CAGATATTGTGGCAGAGCCACCAGAAA
* * *
83610326 TAGATATTTGTGGCATAGCCACTAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAGAAA
* *
83610354 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
83610375 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.09
27 52 0.80
28 7 0.11
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:83610577 original size:22 final size:21
Alignment explanation
Indices: 83610533--83610597 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
83610523 GCAAATACGT
*
83610533 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCAT-ATCAGG
*
83610555 TTGGCACAAAGCCATATGTAGG
1 TTGGCACAAAGCCATAT-CAGG
*
83610577 TT-ACTACAAAGCCATAATCAG
1 TTGGC-ACAAAGCCAT-ATCAG
83610598 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.08
22 31 0.86
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (21 bp):
TTGGCACAAAGCCATATCAGG
Found at i:83611107 original size:27 final size:27
Alignment explanation
Indices: 83611025--83611377 Score: 500
Period size: 27 Copynumber: 13.2 Consensus size: 27
83611015 GGGTAAAATA
* * * *
83611025 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* **
83611051 GTAATTCCACCCTACA-GGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
83611077 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
83611104 GTAATTCTACCCTAC-GGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
83611130 ATGATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
83611157 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
83611184 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
83611211 GTAATTCTACCCTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
83611238 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
83611265 ATAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
83611292 GTAATTCTACCTTATAGGGGTA-TTCAG
1 GTAATTCTACCCTACAGGGGTATTTC-G
83611319 GTAATTCTACCCTACA-GGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
83611345 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
83611372 GTAATT
1 GTAATT
83611378 TTGTAAATCG
Statistics
Matches: 292, Mismatches: 30, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
26 81 0.28
27 211 0.72
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:83611430 original size:27 final size:26
Alignment explanation
Indices: 83611359--83611431 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
83611349 TTCTACCCTA
*
83611359 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTT-GGTAATTCTGTAAAT
* ** *
83611386 CGAGGGTAAAATGTTAATTCTGTAAAT
1 CAAGGGT-ATTTGGTAATTCTGTAAAT
83611413 CAAGGGTACTTTGGTAATT
1 CAAGGGTA-TTTGGTAATT
83611432 TTACAAGTCG
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
26 1 0.03
27 32 0.91
28 2 0.06
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (26 bp):
CAAGGGTATTTGGTAATTCTGTAAAT
Found at i:83611445 original size:27 final size:26
Alignment explanation
Indices: 83611413--83611809 Score: 407
Period size: 27 Copynumber: 14.8 Consensus size: 26
83611403 TTCTGTAAAT
* *
83611413 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAA-A
* *** **
83611440 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACA-AA
* * *
83611467 CGAGGGTATTTTAGTAATTTCACAAA
1 CAAGGGTATTTTGGTAATTTTACAAA
*
83611493 TCAGGGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* **
83611520 CTAGGGGTATTTTAATAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
*
83611547 CTAGGGGTATTTTGGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
*
83611574 CCAAGGGTATTTTGGTAATTTTATAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
*
83611601 CAAAGGGTATTTTAGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* **
83611628 CTAGGGGTATTTTGGTAATTTTGTAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
83611655 CTAAGGGTATTTTGGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* * *
83611682 CCAGGGTATTTTGGTGATTTTATAAA
1 CAAGGGTATTTTGGTAATTTTACAAA
*
83611708 CCAAGGGTATTTTAGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
83611735 CCAGGGGTATTTTGGTAATTTTATAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
83611762 CTAAGGGTATTTTAGAAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
*
83611789 CCAGGGGTATTTTGGTAATTT
1 -CAAGGGTATTTTGGTAATTT
83611810 GGTAAACTAA
Statistics
Matches: 314, Mismatches: 48, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
26 25 0.08
27 287 0.91
28 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (26 bp):
CAAGGGTATTTTGGTAATTTTACAAA
Found at i:83611626 original size:81 final size:80
Alignment explanation
Indices: 83611413--83611809 Score: 481
Period size: 81 Copynumber: 4.9 Consensus size: 80
83611403 TTCTGTAAAT
* * * * * ** *
83611413 CAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTATT
1 CAAGGGTATTTTGGTAATTTTACAA-ACAAGGGTATTTTAGTAATTTTACAAACTAG-GGGTATT
* * *
83611477 TTAGTAATTTCACAAAT
64 TTGGTAATTTTACAAAC
* * *
83611494 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACTAGGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAAC-AAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
83611559 TGGTAATTTTACAAAC
65 TGGTAATTTTACAAAC
*
83611575 CAAGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAAC-AAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
**
83611640 TGGTAATTTTGTAAAC
65 TGGTAATTTTACAAAC
* * * * * * *
83611656 TAAGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTT
1 CAAGGGTATTTTGGTAATTTTACAAACAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT
*
83611721 AGTAATTTTACAAAC
66 GGTAATTTTACAAAC
* * * *
83611736 CAGGGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAGAAATTTTACAAACCAGGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAAC-AAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
83611801 TGGTAATTT
65 TGGTAATTT
83611810 GGTAAACTAA
Statistics
Matches: 273, Mismatches: 40, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
80 69 0.25
81 201 0.74
82 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAACAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT
GGTAATTTTACAAAC
Found at i:83611816 original size:27 final size:27
Alignment explanation
Indices: 83611470--83611809 Score: 439
Period size: 27 Copynumber: 12.6 Consensus size: 27
83611460 TACAGGTCGA
* * *
83611470 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
83611497 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
83611524 GGGTATTTTAATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
83611551 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
83611578 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
83611605 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
83611632 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
83611659 GGGTATTTTGGTAATTTTACAAACCA-
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
83611685 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
83611712 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
83611739 GGGTATTTTGGTAATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
83611766 GGGTATTTTAGAAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
83611793 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
83611810 GGTAAACTAA
Statistics
Matches: 272, Mismatches: 40, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
26 24 0.09
27 248 0.91
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:83614219 original size:41 final size:41
Alignment explanation
Indices: 83614097--83614244 Score: 147
Period size: 40 Copynumber: 3.6 Consensus size: 41
83614087 TTTTATCAAA
* * *
83614097 TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCA-
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAACTCAT
** * * *
83614137 TCACCGGCATGAAGCCTGCTAGACTTTAAGTCTGAACTCAT
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAACTCAT
* *
83614178 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCG-ACATCATT
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAAC-TCA-T
* *
83614220 TCAACGGCATTATAGCCTACTAGGC
1 TCACCGGCATT-TAGCCTGCTAGGC
83614245 CCGAAGCCTG
Statistics
Matches: 86, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
40 34 0.40
41 30 0.35
42 11 0.13
43 11 0.13
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAACTCAT
Found at i:83614455 original size:28 final size:28
Alignment explanation
Indices: 83614417--83614514 Score: 133
Period size: 28 Copynumber: 3.5 Consensus size: 28
83614407 GAATCATTTG
* * *
83614417 ATATTTTGCACACGAAATGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
83614445 ATATCTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
* *
83614473 ATATTTTGTACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
83614501 ATATTTCGTACACT
1 ATATTTCGCACACT
83614515 GAGTACCATA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGTCATTCTCA
Found at i:83616115 original size:39 final size:39
Alignment explanation
Indices: 83616033--83616195 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
83616023 TATGGTAAAC
* *
83616033 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
83616073 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
83616112 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
83616151 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
83616190 CGCACA
1 CGCACA
83616196 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:83623794 original size:41 final size:41
Alignment explanation
Indices: 83623696--83624001 Score: 202
Period size: 40 Copynumber: 7.5 Consensus size: 41
83623686 TTTTATCAAA
** ** *
83623696 TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCA-
1 TCACCGGCATTTAGCCTGCTAGACTTTAAGTCCGAACTCAT
*** **
83623736 TCACCGGCACGAAGCCTGCTAGACTTTAAGTCTAAACTCAT
1 TCACCGGCATTTAGCCTGCTAGACTTTAAGTCCGAACTCAT
* * * *
83623777 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCG-ACATCATT
1 TCACCGGCATTTAGCCTGCTAGACTTTAAGTCCGAAC-TCA-T
*
83623819 TCACCGGCATTATAGCCTGCTAGGAACTTTTA-T-C-AA---A-
1 TCACCGGCATT-TAGCCTGCTA-G-ACTTTAAGTCCGAACTCAT
* ** ** *
83623856 TCACCGGCATATAGCCTGCTAGGTTTTAAACCCGAATTCA-
1 TCACCGGCATTTAGCCTGCTAGACTTTAAGTCCGAACTCAT
*** *
83623896 TCACCGGCACGAAGCCTGCTAGACTTTAAGTCTGAACTCAT
1 TCACCGGCATTTAGCCTGCTAGACTTTAAGTCCGAACTCAT
* * * *
83623937 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCG-ACATCATT
1 TCACCGGCATTTAGCCTGCTAGACTTTAAGTCCGAAC-TCA-T
83623979 TCACCGGCATTATAGCCTGCTAG
1 TCACCGGCATT-TAGCCTGCTAG
83624002 GCCCGAAGCC
Statistics
Matches: 202, Mismatches: 47, Indels: 31
0.72 0.17 0.11
Matches are distributed among these distances:
34 4 0.02
35 1 0.00
36 11 0.05
37 12 0.06
39 1 0.00
40 66 0.33
41 57 0.28
42 24 0.12
43 21 0.10
44 1 0.00
45 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTTAGCCTGCTAGACTTTAAGTCCGAACTCAT
Found at i:83623798 original size:81 final size:80
Alignment explanation
Indices: 83623696--83623959 Score: 326
Period size: 81 Copynumber: 3.3 Consensus size: 80
83623686 TTTTATCAAA
83623696 TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCATCACCGGCACGAAGCCTGCTAGACT
1 TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCATCACCGGCACGAAGCCTGCTAGACT
83623761 TTAAGTCTAAACTCAT
66 TTAAGTCT-AACTCAT
* * * * **
83623777 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGACA-TCATTTCACCGGCATTATAGCCTGCTA
1 TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGA-ATTCA--TCACCGGCACGA-AGCCTGCTA
*
83623841 GGAACTTTTA-TC-AA---A-
62 -G-ACTTTAAGTCTAACTCAT
*
83623856 TCACCGGCATATAGCCTGCTAGGTTTTAAACCCGAATTCATCACCGGCACGAAGCCTGCTAGACT
1 TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCATCACCGGCACGAAGCCTGCTAGACT
83623921 TTAAGTCTGAACTCAT
66 TTAAGTCT-AACTCAT
*
83623937 TCACCGGCATTTCGCCTGCTAGG
1 TCACCGGCATTTAGCCTGCTAGG
83623960 CTTGAAGCCC
Statistics
Matches: 152, Mismatches: 17, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
74 6 0.04
75 3 0.02
76 9 0.06
77 12 0.08
78 1 0.01
79 33 0.22
80 2 0.01
81 55 0.36
82 1 0.01
83 12 0.08
84 9 0.06
85 3 0.02
86 6 0.04
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (80 bp):
TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCATCACCGGCACGAAGCCTGCTAGACT
TTAAGTCTAACTCAT
Found at i:83623948 original size:160 final size:160
Alignment explanation
Indices: 83623684--83624002 Score: 620
Period size: 160 Copynumber: 2.0 Consensus size: 160
83623674 ATAGTCTTAG
*
83623684 ACTTTTATCAAATCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCATCACCGGCACGAA
1 ACTTTTATCAAATCACCGGCATATAGCCTGCTAGGTTTTAAACCCGAATTCATCACCGGCACGAA
83623749 GCCTGCTAGACTTTAAGTCTAAACTCATTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGACA
66 GCCTGCTAGACTTTAAGTCTAAACTCATTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGACA
83623814 TCATTTCACCGGCATTATAGCCTGCTAGGA
131 TCATTTCACCGGCATTATAGCCTGCTAGGA
83623844 ACTTTTATCAAATCACCGGCATATAGCCTGCTAGGTTTTAAACCCGAATTCATCACCGGCACGAA
1 ACTTTTATCAAATCACCGGCATATAGCCTGCTAGGTTTTAAACCCGAATTCATCACCGGCACGAA
*
83623909 GCCTGCTAGACTTTAAGTCTGAACTCATTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGACA
66 GCCTGCTAGACTTTAAGTCTAAACTCATTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGACA
83623974 TCATTTCACCGGCATTATAGCCTGCTAGG
131 TCATTTCACCGGCATTATAGCCTGCTAGG
83624003 CCCGAAGCCC
Statistics
Matches: 157, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
160 157 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (160 bp):
ACTTTTATCAAATCACCGGCATATAGCCTGCTAGGTTTTAAACCCGAATTCATCACCGGCACGAA
GCCTGCTAGACTTTAAGTCTAAACTCATTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGACA
TCATTTCACCGGCATTATAGCCTGCTAGGA
Found at i:83629537 original size:46 final size:48
Alignment explanation
Indices: 83629435--83629658 Score: 203
Period size: 47 Copynumber: 4.8 Consensus size: 48
83629425 ACATTATGAG
* * * ** * **
83629435 AGCCAATGCAAGACCATGTCTGGGACATGGCATCAGTGTTGAGA-CAA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
* * *
83629482 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
*
83629529 AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGG-CTACGAGATG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTA
* * * * *
83629574 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATATG
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
*
83629622 AGCCAGTGTAAGACCATGTCTGGGAGATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
83629659 ACCTTACCTA
Statistics
Matches: 146, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
45 3 0.02
46 60 0.41
47 65 0.45
48 18 0.12
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
Found at i:83629601 original size:93 final size:94
Alignment explanation
Indices: 83629397--83629658 Score: 236
Period size: 94 Copynumber: 2.8 Consensus size: 94
83629387 TGAGCTAGTA
* * * * *
83629397 TAAGACATGTTTAGGACAT-GCATCGAC-C-ACATTATGAGAGCCAATGCAAGACCATGTCTGGG
1 TAAGACATGTCTAGGACATGGCATCGACTCGAGA-CAT-A-AGCCAGTGTAAGACCATGTCTGGG
* ** *
83629459 ACATGGCATCAGTG-T-TGAGACAAGAG-CTAGTG
63 ACATGGCATC-G-GCTACGAGATGATAGTC-AGTG
* * *
83629491 TAAGACATGTCTAGGACAT-GCATCGGCCTCGAGACGTAAGCCAGTGTAAGA-CATGTTTGGGAC
1 TAAGACATGTCTAGGACATGGCATC-GACTCGAGACATAAGCCAGTGTAAGACCATGTCTGGGAC
83629554 AT-GCATCGGCTACGAGATGATAGTCAGTG
65 ATGGCATCGGCTACGAGATGATAGTCAGTG
* * * * *
83629583 TAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCCAGTGTAAGACCATGTCTGGGAG
1 TAAGA-CATGTCTAGGACATGGCATCGACTCGAGACATAAGCCAGTGTAAGACCATGTCTGGGAC
83629648 ATGGCATCGGC
65 ATGGCATCGGC
83629659 ACCTTACCTA
Statistics
Matches: 138, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
90 1 0.01
91 2 0.01
92 21 0.15
93 48 0.35
94 51 0.37
95 11 0.08
96 2 0.01
97 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
TAAGACATGTCTAGGACATGGCATCGACTCGAGACATAAGCCAGTGTAAGACCATGTCTGGGACA
TGGCATCGGCTACGAGATGATAGTCAGTG
Found at i:83629814 original size:2 final size:2
Alignment explanation
Indices: 83629807--83629831 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
83629797 TATGAGCTTA
83629807 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
83629832 ATAGGTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:83630283 original size:38 final size:38
Alignment explanation
Indices: 83630240--83630315 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
83630230 ATAGGTAGGT
* *
83630240 AAGGGTGGCAATGAGGCTTGGTAAATAGCCTTATATTG
1 AAGGGTGGCAATAAGGCTTCGTAAATAGCCTTATATTG
*
83630278 AAGGGTGGCAATAAGGCTTCGTAAATAGCTTTATATTG
1 AAGGGTGGCAATAAGGCTTCGTAAATAGCCTTATATTG
83630316 TACACACAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.29, T:0.30
Consensus pattern (38 bp):
AAGGGTGGCAATAAGGCTTCGTAAATAGCCTTATATTG
Found at i:83630621 original size:40 final size:40
Alignment explanation
Indices: 83630559--83630645 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
83630549 ATGTTTTTGC
*
83630559 ACACGGGCTAGGACACAGGCGTGTCGTGGTCGTGTGAGGG
1 ACACGGGCTAGGACACAGGCGTGTCGTGGCCGTGTGAGGG
*
83630599 ACACGGGCTAGGATAC-GAGCGTGTCGTGGCCGTGTGAGGG
1 ACACGGGCTAGGACACAG-GCGTGTCGTGGCCGTGTGAGGG
83630639 ACACGGG
1 ACACGGG
83630646 TGTGTGTCTG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.18, C:0.21, G:0.45, T:0.16
Consensus pattern (40 bp):
ACACGGGCTAGGACACAGGCGTGTCGTGGCCGTGTGAGGG
Found at i:83640088 original size:21 final size:21
Alignment explanation
Indices: 83640064--83640128 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
83640054 AAATCTAACT
83640064 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
*
83640085 GAAGC-C-TGAAG-GCT-AACT
1 GAAGCACAT-AAGTGCTAAACG
83640103 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
83640124 GAAGC
1 GAAGC
83640129 CCGAAGGCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 8 0.22
19 8 0.22
20 8 0.22
21 13 0.35
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.14
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:83640112 original size:39 final size:39
Alignment explanation
Indices: 83640058--83640146 Score: 169
Period size: 39 Copynumber: 2.3 Consensus size: 39
83640048 AACCCGAAAT
*
83640058 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCTGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
83640097 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
83640136 CTAACTGAAGC
1 CTAACTGAAGC
83640147 TCATCAGAGC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.15
Consensus pattern (39 bp):
CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
Found at i:83651248 original size:2 final size:2
Alignment explanation
Indices: 83651241--83651287 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
83651231 GCATATAAAA
83651241 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83651283 AT AT A
1 AT AT A
83651288 AGCTTACAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:83653589 original size:39 final size:40
Alignment explanation
Indices: 83653480--83653690 Score: 277
Period size: 40 Copynumber: 5.3 Consensus size: 40
83653470 GCTACTCGTT
* * * *
83653480 CAAATGCCTTCGAGACATAGCCC-AGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGAATT-TAGTAACTCGCA
* * *
83653520 CAAATGTCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
* *
83653560 CCAATGCCTTCGGG-CTTAACCCGAATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
83653599 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
* *
83653639 CCAATGCCTTCGGG-CTTAGCCCGGAA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCC-GAATTTAGTAACTCGCA
83653678 CAAATGCCTTCGG
1 CAAATGCCTTCGG
83653691 ATCTTAGTCC
Statistics
Matches: 151, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 67 0.44
40 82 0.54
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
Found at i:83653595 original size:79 final size:79
Alignment explanation
Indices: 83653508--83653690 Score: 305
Period size: 79 Copynumber: 2.3 Consensus size: 79
83653498 AGCCCAGTTA
* * *
83653508 TAGTAACTCGCACAAATGTCTTCGGGACTTAACCTGGATTTAGTAACTCGCACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACCAATGCCTTCGG
83653573 GCTTAACCC-GAATT
66 GCTTAACCCGGAA-T
*
83653587 TAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACCAATGCCTTCGG
*
83653652 GCTTAGCCCGGAAT
66 GCTTAACCCGGAAT
83653666 TAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
83653691 ATCTTAGTCC
Statistics
Matches: 97, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
79 94 0.97
80 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (79 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACCAATGCCTTCGG
GCTTAACCCGGAAT
Found at i:83653697 original size:40 final size:40
Alignment explanation
Indices: 83653508--83653743 Score: 261
Period size: 40 Copynumber: 6.0 Consensus size: 40
83653498 AGCCCAGTTA
* * *
83653508 TAGTAACTCGCACAAATGTCTTCGGGACTTAACCTGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
*
83653548 TAGTAACTCGCACCAATGCCTTCGGG-CTTAACCC-GAATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAA-T
*
83653587 TAGTAACTCGTACAAATGCCTTCGGGACTTAACCC-GAATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAA-T
* *
83653627 TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
**
83653666 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG-AT
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGAAT
* * * *
83653705 ATAATCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -TAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
83653744 CATCATTCGA
Statistics
Matches: 172, Mismatches: 15, Indels: 17
0.84 0.07 0.08
Matches are distributed among these distances:
38 4 0.02
39 64 0.37
40 93 0.54
41 11 0.06
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
Found at i:83653727 original size:79 final size:79
Alignment explanation
Indices: 83653508--83653743 Score: 300
Period size: 79 Copynumber: 3.0 Consensus size: 79
83653498 AGCCCAGTTA
*
83653508 TAGTAACTCGCACAAATGTCTTCGGGACTTAACCTGGATTTAGTAACTCGCACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACC-GGATTTAGTAACTCGCACCAATGCCTTCGG
*
83653573 GCTTAACCC-GAATT
65 GCTTAGCCCGGAATT
* *
83653587 TAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAA-CCGGATTTAGTAACTCGCACCAATGCCTTCGG
83653652 GCTTAGCCCGGAA-T
65 GCTTAGCCCGGAATT
* * * * * *
83653666 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAATCACTTAGCA-CAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCGGATTTAGTAAC-TCGCACCAATGCCTTC
83653729 GGGACTTAGCCCGGA
63 GGG-CTTAGCCCGGA
83653744 CATCATTCGA
Statistics
Matches: 139, Mismatches: 12, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
78 3 0.02
79 116 0.83
80 20 0.14
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (79 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCGGATTTAGTAACTCGCACCAATGCCTTCGGG
CTTAGCCCGGAATT
Found at i:83658362 original size:30 final size:30
Alignment explanation
Indices: 83658328--83658387 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
83658318 ATTTAATACG
83658328 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
83658358 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
83658388 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:83665371 original size:45 final size:46
Alignment explanation
Indices: 83665307--83665477 Score: 210
Period size: 45 Copynumber: 3.7 Consensus size: 46
83665297 AACCCGCCCC
*
83665307 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
*
83665352 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCA
* * *
83665400 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
83665445 T-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83665478 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:83665423 original size:92 final size:92
Alignment explanation
Indices: 83665312--83665480 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
83665302 GCCCCTAAGT
*
83665312 GAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
83665376 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
83665404 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
83665469 GAGTTCGGATGC
66 GAGTTCGGATGC
83665481 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 62 0.84
93 12 0.16
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:83665933 original size:30 final size:30
Alignment explanation
Indices: 83665899--83665958 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
83665889 ATTTAATACG
83665899 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
83665929 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
83665959 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:83671963 original size:39 final size:40
Alignment explanation
Indices: 83671854--83672117 Score: 313
Period size: 40 Copynumber: 6.7 Consensus size: 40
83671844 GCTACTCGTT
* *
83671854 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
83671894 CAAATGTCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
83671934 CCAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
83671973 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
83672013 CCAATGCCTTCGAG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
83672052 CAAATGCCTTC-GGATCTTAGTCCGGATATAATCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
83672093 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
83672118 CATCATTCGA
Statistics
Matches: 195, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 69 0.35
40 112 0.57
41 13 0.07
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:83671976 original size:79 final size:79
Alignment explanation
Indices: 83671856--83672064 Score: 330
Period size: 79 Copynumber: 2.6 Consensus size: 79
83671846 TACTCGTTCA
* * *
83671856 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGTCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
83671920 TTTAGTAACTCGCACC
64 TTTAGTAACTCGCACC
* *
83671936 AATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACTTAACCCAGATT
1 AATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATT
83672001 TAGTAACTCGCACC
66 TAGTAACTCGCACC
* *
83672015 AATGCCTTCGAGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGG
1 AATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
83672065 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
79 105 0.88
80 14 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATT
TAGTAACTCGCACC
Found at i:83672077 original size:119 final size:119
Alignment explanation
Indices: 83671831--83672115 Score: 319
Period size: 119 Copynumber: 2.4 Consensus size: 119
83671821 ACCTTGGAAT
* * * * *
83671831 TTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 TTAACCCGGATATA-ATAACTCGTACAAATGCCTTCGGGACTTAACCCGATTATAGTAACTCGCA
* * * *
83671894 CAAATGTCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGC
65 CAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGC
* *
83671949 TTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCA
1 TTAACCCGGATATAATAACTCGTACAAATGCCTTCGGGACTTAACCC-GATTATAGTAACTCGCA
* * *
83672013 CCAATGCCTTCGAG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATC
65 CAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGG-GC
** * * * *
83672068 TTAGTCCGGATATAATCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 TTAACCCGGATATAATAAC-TCGTACAAATGCCTTCGGGACTTAACCCG
83672116 GACATCATTC
Statistics
Matches: 141, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
118 41 0.29
119 90 0.64
120 10 0.07
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (119 bp):
TTAACCCGGATATAATAACTCGTACAAATGCCTTCGGGACTTAACCCGATTATAGTAACTCGCAC
AAATGCCTTCGAGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGC
Found at i:83672101 original size:79 final size:79
Alignment explanation
Indices: 83671856--83672117 Score: 323
Period size: 79 Copynumber: 3.3 Consensus size: 79
83671846 TACTCGTTCA
* * *
83671856 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGTCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
83671920 TTTAGTAACTCGCACC
64 TTTAGTAACTCGCACC
* * * *
83671936 AATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACTTAACCCAGATT
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
83672001 TAGTAACTCGCACC
66 TAGTAACTCGCACC
* **
83672015 AATGCCTTCGAGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGAT
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGAT
* * * *
83672079 ATAATCACTTAGCA-C
65 TTAGTAAC-TCGCACC
*
83672094 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
83672118 CATCATTCGA
Statistics
Matches: 160, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
78 3 0.02
79 128 0.80
80 29 0.18
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
TAGTAACTCGCACC
Found at i:83676553 original size:41 final size:41
Alignment explanation
Indices: 83676496--83676699 Score: 189
Period size: 41 Copynumber: 5.0 Consensus size: 41
83676486 ATTATTGAAC
* *
83676496 TGCACATACATGCCCCTATTTGTACTTTGGTACCCCTAAAT
1 TGCACTTACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
* * * *
83676537 TGCACTTACGCGCCCCTGTTTGTACTTCGGTACCCCTGAAT
1 TGCACTTACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
* *
83676578 TGCACATGA-GTG-GCCTATTTGTACTTTGGTACCCCTAAAT
1 TGCAC-TTACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
* * * * * * ** *
83676618 TGCACATATGTGCCTCTAATTATTCTTTATTACCCCTGAAT
1 TGCACTTACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
* * *
83676659 TGCA-TATACATGCCCCTGTTTGTACTTTGGTACCCTTAAAT
1 TGCACT-TACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
83676700 GTGCTTGGGT
Statistics
Matches: 125, Mismatches: 34, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
39 1 0.01
40 32 0.26
41 90 0.72
42 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (41 bp):
TGCACTTACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
Found at i:83676652 original size:81 final size:82
Alignment explanation
Indices: 83676491--83676699 Score: 242
Period size: 81 Copynumber: 2.6 Consensus size: 82
83676481 AGAATATTAT
* * **
83676491 TGAACTGCACATACATGCCCCTATTTGTACTTTGGTACCCCTAAATTGCACTTACGCGCCCCTGT
1 TGAATTGCACATACATGCCCCTATTTGTACTTTGGTACCCCTAAATTGCACATACGCGCCCCTAA
* *
83676556 TTGTACTTCGGTACCCC
66 TTATACTTCAGTACCCC
* * * * *
83676573 TGAATTGCACATGA-GTG-GCCTATTTGTACTTTGGTACCCCTAAATTGCACATATGTGCCTCTA
1 TGAATTGCACAT-ACATGCCCCTATTTGTACTTTGGTACCCCTAAATTGCACATACGCGCCCCTA
* * *
83676636 ATTATTCTTTATTACCCC
65 ATTATACTTCAGTACCCC
* * *
83676654 TGAATTGCATATACATGCCCCTGTTTGTACTTTGGTACCCTTAAAT
1 TGAATTGCACATACATGCCCCTATTTGTACTTTGGTACCCCTAAAT
83676700 GTGCTTGGGT
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
80 1 0.01
81 65 0.62
82 38 0.36
83 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (82 bp):
TGAATTGCACATACATGCCCCTATTTGTACTTTGGTACCCCTAAATTGCACATACGCGCCCCTAA
TTATACTTCAGTACCCC
Found at i:83689085 original size:40 final size:40
Alignment explanation
Indices: 83689048--83689227 Score: 176
Period size: 40 Copynumber: 4.5 Consensus size: 40
83689038 GCTACTCGTT
*
83689048 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
83689088 CAAATGCCTTCAGGACTTAACCCAGATT-TAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* *
83689128 C-CATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * *
83689166 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAAC-TCGCA
83689207 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
83689228 TGGACATCAT
Statistics
Matches: 113, Mismatches: 17, Indels: 20
0.75 0.11 0.13
Matches are distributed among these distances:
37 1 0.01
38 21 0.19
39 18 0.16
40 59 0.52
41 14 0.12
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:83689194 original size:78 final size:80
Alignment explanation
Indices: 83689050--83689227 Score: 220
Period size: 78 Copynumber: 2.2 Consensus size: 80
83689040 TACTCGTTCA
* *
83689050 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCAGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCAGAT
*
83689115 TTAATAAC-TCGCAC
66 TTAATAACTTAGCAC
* ** *
83689129 CATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCCAG
* *
83689191 ATTTAGTCACTTAGCAC
64 ATTTAATAACTTAGCAC
*
83689208 AAAGCCTTCGGGACTTAGCC
1 AATGCCTTCGGGACTTAGCC
83689228 TGGACATCAT
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 4 0.05
78 47 0.56
79 26 0.31
80 7 0.08
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCAGAT
TTAATAACTTAGCAC
Found at i:83699536 original size:28 final size:28
Alignment explanation
Indices: 83699490--83699558 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
83699480 TTTAAAACCC
*
83699490 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
83699517 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
83699545 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
83699559 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:83703804 original size:28 final size:28
Alignment explanation
Indices: 83703758--83703826 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
83703748 TTTAAAACCC
*
83703758 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
83703785 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
83703813 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
83703827 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:83706648 original size:16 final size:16
Alignment explanation
Indices: 83706627--83706659 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
83706617 GAAAACAACT
83706627 AAAAAGG-GCTAAATTG
1 AAAAAGGTG-TAAATTG
83706643 AAAAAGGTGTAAATTG
1 AAAAAGGTGTAAATTG
83706659 A
1 A
83706660 GTGATAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.52, C:0.03, G:0.24, T:0.21
Consensus pattern (16 bp):
AAAAAGGTGTAAATTG
Found at i:83707277 original size:42 final size:42
Alignment explanation
Indices: 83707211--83707369 Score: 117
Period size: 42 Copynumber: 3.7 Consensus size: 42
83707201 ATAAGTGATT
*
83707211 TCGTATAAGACCATGT-TTGAGACATGGCATCGATATGAGGTC
1 TCGTATAAGACCATGTCTAG-GACATGGCATCGATATGAGGTC
* * * *
83707253 TCGTATAAGACCATGTCTAGGACATGGCGTCGGTACCGATTCGAGAC
1 TCGTATAAGACCATGTCTAGGACATGGCATCGATA-TGA---G-GTC
* * * * *
83707300 TTCGTATAAGACCATATCTGGGATATGGCAT-GATGTGTAGTTC
1 -TCGTATAAGACCATGTCTAGGACATGGCATCGATATG-AGGTC
* *
83707343 -CTTGTAAGACCATGTCTAGGACATGGC
1 TCGTATAAGACCATGTCTAGGACATGGC
83707370 TTTGGCTCCC
Statistics
Matches: 90, Mismatches: 19, Indels: 17
0.71 0.15 0.13
Matches are distributed among these distances:
41 22 0.24
42 29 0.32
43 5 0.06
44 1 0.01
46 2 0.02
47 5 0.06
48 26 0.29
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (42 bp):
TCGTATAAGACCATGTCTAGGACATGGCATCGATATGAGGTC
Found at i:83717959 original size:34 final size:36
Alignment explanation
Indices: 83717877--83717967 Score: 116
Period size: 34 Copynumber: 2.6 Consensus size: 36
83717867 TTATGCATTG
83717877 CTGATATTG-TACTGAAATGGGCTAAGGCCCTCACA
1 CTGATATTGCTACTGAAATGGGCTAAGGCCCTCACA
* * * *
83717912 CTGTTATTTCTACTGTAATGGGCTAAGG-TC-CACA
1 CTGATATTGCTACTGAAATGGGCTAAGGCCCTCACA
*
83717946 CTGATATTGCTACTGATATGGG
1 CTGATATTGCTACTGAAATGGG
83717968 GTTAAGCCAG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
34 22 0.47
35 8 0.17
36 17 0.36
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (36 bp):
CTGATATTGCTACTGAAATGGGCTAAGGCCCTCACA
Found at i:83719169 original size:42 final size:42
Alignment explanation
Indices: 83719064--83719171 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 42
83719054 CCAATGCCAT
* * *
83719064 ATATGGTCTTAAATGTAATCTCGTATTGATGACAACAGCCCA
1 ATATGGTCTTACACGTAATCTCATATTGATGACAACAGCCCA
* * * * *
83719106 ACTATGGTTTTACACGAAATCTCATATTGATG-CCATATCCCA
1 A-TATGGTCTTACACGTAATCTCATATTGATGACAACAGCCCA
83719148 GATATGGTCTTACACGTAATCTCA
1 -ATATGGTCTTACACGTAATCTCA
83719172 GTAACCCTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 28 0.52
43 26 0.48
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
ATATGGTCTTACACGTAATCTCATATTGATGACAACAGCCCA
Found at i:83728027 original size:40 final size:40
Alignment explanation
Indices: 83727982--83728188 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
83727972 CGGAATACAA
*
83727982 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
83728022 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
83728062 CTGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *** * *
83728102 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAAT-GCCTTCGGGTCTTAGC
** * ** * *
83728142 CCGGATATAATTACTAGCATAAATGTCTT-GGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
83728181 CCGGATAT
1 CCGGATAT
83728189 CATTCAATTG
Statistics
Matches: 138, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 19 0.14
40 116 0.84
41 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:83736121 original size:42 final size:42
Alignment explanation
Indices: 83736010--83736131 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 42
83736000 TACCATACCA
* *
83736010 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * * *
83736052 ATTCCAATAGCCCAGCTATGGTCTTACATG-AAGTGTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
83736095 ATGCCATATCCCAGATATGGTCTTACACT-TAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACA-TGTAATCTCA
83736132 GTAACCCTAA
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
42 30 0.45
43 36 0.55
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:83740724 original size:40 final size:40
Alignment explanation
Indices: 83740665--83740856 Score: 255
Period size: 40 Copynumber: 4.8 Consensus size: 40
83740655 CGGATGATAA
* *
83740665 CCGGGCTAAGTCCCAAAGGCATTTGTGCGATTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
**
83740705 CCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTA-CAAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA-T
*
83740745 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
*
83740785 CCGGGCTAAGTCCCGAAGGCA-TTGCTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACCA-AAT
* * *
83740825 GCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
83740857 AGCTATATCC
Statistics
Matches: 135, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 7 0.05
40 119 0.88
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
Found at i:83746925 original size:46 final size:46
Alignment explanation
Indices: 83746875--83747050 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
83746865 TGGTTGAGCA
83746875 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83746921 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
83746966 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83747014 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83747051 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83747031 original size:93 final size:93
Alignment explanation
Indices: 83746872--83747043 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
83746862 GGATGGTTGA
* *
83746872 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83746937 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
83746965 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83747030 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
83747044 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83748425 original size:40 final size:40
Alignment explanation
Indices: 83748366--83748557 Score: 289
Period size: 40 Copynumber: 4.8 Consensus size: 40
83748356 CGGATGATAA
*
83748366 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* *
83748406 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
*
83748446 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAGCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
*
83748486 CCGGGCTAAGTCCCGAAGGCA-TTGCTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACCA-AAT
* *
83748526 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
83748558 AGCTATATCC
Statistics
Matches: 139, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 131 0.94
41 5 0.04
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
Found at i:83750857 original size:6 final size:6
Alignment explanation
Indices: 83750848--83750920 Score: 78
Period size: 6 Copynumber: 11.8 Consensus size: 6
83750838 AATAAAAATT
*
83750848 AGAATC AGAATC AGAATC AGGTAAT- AGAATC AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
*
83750897 AGGTAA-C AGAATC AAAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
83750921 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
5 5 0.09
6 43 0.75
7 5 0.09
8 4 0.07
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:83750885 original size:31 final size:31
Alignment explanation
Indices: 83750848--83750920 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
83750838 AATAAAAATT
*
83750848 AGAATCAGAATCAGAATCAGGTAATAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
83750879 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
83750910 AAAATCAGAAT
1 AGAATCAGAAT
83750921 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:83750910 original size:25 final size:24
Alignment explanation
Indices: 83750847--83750894 Score: 87
Period size: 25 Copynumber: 2.0 Consensus size: 24
83750837 GAATAAAAAT
83750847 TAGAATCAGAATCAGAATCAGGTAA
1 TAGAATCAGAATCAGAATCA-GTAA
83750872 TAGAATCAGAATCAGAATCAGTA
1 TAGAATCAGAATCAGAATCAGTA
83750895 TCAGGTAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 3 0.13
25 20 0.87
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (24 bp):
TAGAATCAGAATCAGAATCAGTAA
Found at i:83751088 original size:27 final size:26
Alignment explanation
Indices: 83751057--83751158 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
83751047 GCTCAGTTAT
* *
83751057 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
83751084 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
83751110 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
83751138 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
83751159 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:83751345 original size:22 final size:21
Alignment explanation
Indices: 83751317--83751380 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
83751307 GCAAATACGT
83751317 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
83751339 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
83751361 TTGACACAAAGCCATAATCA
1 TTGGCACAAA-CCATAATCA
83751381 AAAGGCTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:83751865 original size:27 final size:27
Alignment explanation
Indices: 83751808--83752081 Score: 374
Period size: 27 Copynumber: 10.3 Consensus size: 27
83751798 GGGGCAAAAT
* * * *
83751808 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83751834 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83751861 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83751888 GGTAATTCTACCCTAC-GGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83751914 GATGATTCTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83751940 GGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83751967 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83751994 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
83752021 AATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
83752048 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83752075 AGTAATT
1 GGTAATT
83752082 TTGTAAATCG
Statistics
Matches: 216, Mismatches: 29, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 60 0.28
27 156 0.72
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:83752001 original size:106 final size:107
Alignment explanation
Indices: 83751810--83752083 Score: 406
Period size: 106 Copynumber: 2.6 Consensus size: 107
83751800 GGCAAAATGG
* * * * * * *
83751810 TAATTTTACCCCACAAGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCT
* *
83751875 ACAGGGGTATTTCGGTAATTCTACCCTAC-GGGGTATTGCGA
66 ACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTGCAA
* * *
83751916 TGATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTCGGTAATTTTACCCT
1 TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCT
*
83751981 ACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
66 ACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTGCAA
*
83752023 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTT
1 TAATTCTACCCTACA-GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTT
83752084 GTAAATCGAG
Statistics
Matches: 149, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
106 84 0.56
107 23 0.15
108 42 0.28
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (107 bp):
TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCT
ACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTGCAA
Found at i:83752163 original size:27 final size:28
Alignment explanation
Indices: 83752133--83752246 Score: 110
Period size: 27 Copynumber: 4.2 Consensus size: 28
83752123 TACATTGGTG
83752133 ATTTTACAAGTCGA-GGGTATTTCAATA
1 ATTTTACAAGTCGACGGGTATTTCAATA
* *
83752160 ATTTTACAGGTCGA-GGGTATTTCAGTA
1 ATTTTACAAGTCGACGGGTATTTCAATA
* * * * *
83752187 ATTTCACAAAT-GAGGGGTATTTTAGTA
1 ATTTTACAAGTCGACGGGTATTTCAATA
* * *
83752214 ATTTTACAA-ACTACGGGTATTTTAATA
1 ATTTTACAAGTCGACGGGTATTTCAATA
83752241 ATTTTA
1 ATTTTA
83752247 TAAACTAGGG
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
26 2 0.03
27 72 0.97
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (28 bp):
ATTTTACAAGTCGACGGGTATTTCAATA
Found at i:83752232 original size:54 final size:52
Alignment explanation
Indices: 83752146--83752512 Score: 378
Period size: 54 Copynumber: 6.8 Consensus size: 52
83752136 TTACAAGTCG
* * ** * * * * *
83752146 AGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATGA
1 AGGGTATTTTAGTAATTTTACA-AACCAGGGTATTTTAGTAATTTTATAAA-CA
* * *
83752200 GGGGTATTTTAGTAATTTTACAAACTACGGGTATTTTAATAATTTTATAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCA-GGGTATTTTAGTAATTTTATAAAC-A
* * *
83752254 GGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAGTAATTTTACAAACCAG-GGTATTTTAGTAATTTTATAAAC-A
* * * *
83752308 AGGGAATTTTAGTAATTTTACAAACTAGGGTATTTTGGTAATTTTTTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGTATTTTAGTAATTTTATAAA-CA
* * * *
83752361 AGAGTATTTTGGTAATTTTACAAAACAGGGGTATTTT-GTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCA-GGGTATTTTAGTAATTTTATAAA-CA
83752414 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT-GATAATTTTATAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCA-GGGTATTTTAG-TAATTTTATAAAC-A
* *
83752468 AGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCA-GGGTATTTTAGTAATTT
83752513 GGTAAACTAA
Statistics
Matches: 272, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
53 97 0.36
54 174 0.64
55 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.40
Consensus pattern (52 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGTATTTTAGTAATTTTATAAACA
Found at i:83752251 original size:27 final size:27
Alignment explanation
Indices: 83752173--83752512 Score: 334
Period size: 27 Copynumber: 12.7 Consensus size: 27
83752163 TTACAGGTCG
* *
83752173 AGGGTATTTCAGTAATTTCACAAA-TGA
1 AGGGTATTTTAGTAATTTTACAAACT-A
*
83752200 GGGGTATTTTAGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACTA
* * *
83752227 CGGGTATTTTAATAATTTTATAAACTA
1 AGGGTATTTTAGTAATTTTACAAACTA
* * *
83752254 GGGGTATTTTGGTAATTTTACAAAC-C
1 AGGGTATTTTAGTAATTTTACAAACTA
* * *
83752280 AGAGGTATTTTGGTAATTTTATAAACAA
1 AG-GGTATTTTAGTAATTTTACAAACTA
*
83752308 AGGGAATTTTAGTAATTTTACAAACT-
1 AGGGTATTTTAGTAATTTTACAAACTA
* ** *
83752334 AGGGTATTTTGGTAATTTTTTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTA
* *
83752361 AGAGTATTTTGGTAATTTTACAAAAC-A
1 AGGGTATTTTAGTAATTTTAC-AAACTA
* * * *
83752388 GGGGTATTTT-GTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTA
*
83752414 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTA
* *
83752441 GGGGTATTTT-GATAATTTTATAAACTA
1 AGGGTATTTTAG-TAATTTTACAAACTA
83752468 AGGGTATTTTAGTAATTTTACAAA-TCA
1 AGGGTATTTTAGTAATTTTACAAACT-A
* *
83752495 GGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTT
83752513 GGTAAACTAA
Statistics
Matches: 263, Mismatches: 40, Indels: 20
0.81 0.12 0.06
Matches are distributed among these distances:
25 4 0.02
26 42 0.16
27 209 0.79
28 8 0.03
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAACTA
Found at i:83752383 original size:107 final size:108
Alignment explanation
Indices: 83752205--83752512 Score: 467
Period size: 107 Copynumber: 2.9 Consensus size: 108
83752195 AATGAGGGGT
* *
83752205 ATTTTAGTAATTTTACAAACTACGGGTATTTTAATAATTTTATAAACTAGGGGTATTTTGGTAAT
1 ATTTTAGTAATTTTACAAACTACGGGTATTTTGATAATTTTATAAACTAAGGGTATTTTGGTAAT
* *
83752270 TTTACAAACCAGAGGTATTTTGGTAATTTTATAAACAAAGGGA
66 TTTACAAAACAGGGGTATTTTGGTAATTTTATAAACAAAGGGA
* * * *
83752313 ATTTTAGTAATTTTACAAACTA-GGGTATTTTGGTAATTTTTTAAACCAAGAGTATTTTGGTAAT
1 ATTTTAGTAATTTTACAAACTACGGGTATTTTGATAATTTTATAAACTAAGGGTATTTTGGTAAT
* * *
83752377 TTTACAAAACAGGGGTATTTT-GTGATTTTATAAACCAAGGGT
66 TTTACAAAACAGGGGTATTTTGGTAATTTTATAAACAAAGGGA
* * *
83752419 ATTTTAGTAATTTTACAAACCAGGGGTATTTTGATAATTTTATAAACTAAGGGTATTTTAGTAAT
1 ATTTTAGTAATTTTACAAACTACGGGTATTTTGATAATTTTATAAACTAAGGGTATTTTGGTAAT
*
83752484 TTTACAAATCAGGGGTATTTTGGTAATTT
66 TTTACAAAACAGGGGTATTTTGGTAATTT
83752513 GGTAAACTAA
Statistics
Matches: 179, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
106 39 0.22
107 112 0.63
108 28 0.16
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (108 bp):
ATTTTAGTAATTTTACAAACTACGGGTATTTTGATAATTTTATAAACTAAGGGTATTTTGGTAAT
TTTACAAAACAGGGGTATTTTGGTAATTTTATAAACAAAGGGA
Found at i:83752519 original size:54 final size:53
Alignment explanation
Indices: 83752201--83752522 Score: 423
Period size: 54 Copynumber: 6.0 Consensus size: 53
83752191 CACAAATGAG
* ** *
83752201 GGGTATTTTAGTAATTTTACAAACTACGGGTATTTTAATAATTTTATAAACTAG
1 GGGTATTTTAGTAATTTTACAAAC-AGGGGTATTTTGGTAATTTTATAAACTAA
* * *
83752255 GGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTATAAACTAA
* * *
83752309 GGGAATTTTAGTAATTTTACAAACTA-GGGTATTTTGGTAATTTTTTAAACCAA
1 GGGTATTTTAGTAATTTTACAAAC-AGGGGTATTTTGGTAATTTTATAAACTAA
* * * *
83752362 GAGTATTTTGGTAATTTTACAAAACAGGGGTATTTT-GTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTAC-AAACAGGGGTATTTTGGTAATTTTATAAACTAA
*
83752415 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGATAATTTTATAAACTAA
1 GGGTATTTTAGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTATAAACTAA
**
83752469 GGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTGGTAAACTAA
1 GGGTATTTTAGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTATAAACTAA
83752523 AGTATTCTTA
Statistics
Matches: 236, Mismatches: 26, Indels: 12
0.86 0.09 0.04
Matches are distributed among these distances:
52 3 0.01
53 88 0.37
54 144 0.61
55 1 0.00
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (53 bp):
GGGTATTTTAGTAATTTTACAAACAGGGGTATTTTGGTAATTTTATAAACTAA
Found at i:83754521 original size:6 final size:6
Alignment explanation
Indices: 83754491--83754584 Score: 86
Period size: 6 Copynumber: 15.3 Consensus size: 6
83754481 AAGAAACATT
* *
83754491 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* *
83754540 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
83754585 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
5 5 0.07
6 57 0.79
7 7 0.10
8 3 0.04
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Done.