Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 269 of 433
Found at i:83754545 original size:25 final size:25
Alignment explanation
Indices: 83754512--83754581 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
83754502 AATCAAAATG
83754512 AGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
83754537 AGAATCAGAATCAGAATCA-GTATC
1 AGAATCAGAATCAGAATCAGGTAAC
*
83754561 AGGTAA-CAGAATCAAAATCAG
1 A-G-AATCAGAATCAGAATCAG
83754582 AATGTGAATG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
24 5 0.12
25 33 0.82
26 2 0.05
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.17
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:83754549 original size:31 final size:31
Alignment explanation
Indices: 83754512--83754584 Score: 128
Period size: 31 Copynumber: 2.4 Consensus size: 31
83754502 AATCAAAATG
83754512 AGAATCAGAATCAGAATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
83754543 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
83754574 AAAATCAGAAT
1 AGAATCAGAAT
83754585 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:83754803 original size:26 final size:26
Alignment explanation
Indices: 83754721--83754795 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 26
83754711 GCTCAGTTAT
* *
83754721 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
83754748 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
83754774 CAGATATTTGTGGCATAGCCAC
1 CAGATA-TTGTGGCAGAGCCAC
83754796 TTAACAGAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 7 0.16
27 37 0.84
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:83754982 original size:22 final size:22
Alignment explanation
Indices: 83754954--83755018 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
83754944 GCAAATACGT
*
83754954 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
83754976 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
83754998 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
83755019 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:83755502 original size:27 final size:27
Alignment explanation
Indices: 83755472--83755720 Score: 338
Period size: 27 Copynumber: 9.2 Consensus size: 27
83755462 AGGTATCTCT
* * *
83755472 GTAATTCCACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTG
83755499 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTG
*
83755526 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
* *
83755553 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
*
83755580 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTG
* *
83755607 GTAATTCTA-CCTGACAAGGGTATTTCG
1 GTAATTCTACCCT-ACAGGGGTATTTTG
**
83755634 GTAATTCTACCCTACAGGGGTATTCAG
1 GTAATTCTACCCTACAGGGGTATTTTG
*
83755661 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
* * * *
83755688 GTATTTGTACCCTATAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTG
83755715 GTAATT
1 GTAATT
83755721 TTGTAAATCG
Statistics
Matches: 198, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 3 0.02
27 192 0.97
28 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTG
Found at i:83755718 original size:81 final size:82
Alignment explanation
Indices: 83755444--83755720 Score: 375
Period size: 81 Copynumber: 3.4 Consensus size: 82
83755434 AGGGGCAAAA
* * * * * * *
83755444 TGGTAATTTTACCCCACAA-GGTATCTCTGTAATTCCACCCTATAGGGGTATTTTA-GTAATTCT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGGTAATTCT
83755507 ACCCTACAGGGGTATTT
66 ACCCTACAGGGGTATTT
* *
83755524 TGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC-GGTAATTCT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGGTAATTCT
83755588 ACCCTACAGGGGTATTT
66 ACCCTACAGGGGTATTT
*
83755605 TAGTAATTCTA-CCTGACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTA-TTCAGGTAATTC
1 TGGTAATTCTACCCT-ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGGTAATTC
83755668 TACCCTACAGGGGTATTT
65 TACCCTACAGGGGTATTT
* * * * *
83755686 CGGTATTTGTACCCTATAAGGGTATTTTGGTAATT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATT
83755721 TTGTAAATCG
Statistics
Matches: 174, Mismatches: 18, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
80 22 0.13
81 149 0.86
82 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (82 bp):
TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGGTAATTCT
ACCCTACAGGGGTATTT
Found at i:83755801 original size:27 final size:28
Alignment explanation
Indices: 83755771--83755928 Score: 114
Period size: 27 Copynumber: 5.9 Consensus size: 28
83755761 GGTACTTTGG
83755771 TAATTTTACAAGTCGA-GGGTATTTCAA
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* *
83755798 TAATTTTGC-AGTTGA-GGGTATTTCAA
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* * ***
83755824 TAATTTCACAAATC-AGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* * *
83755851 TAATTTTACAA-ACTAGGGGTATTTTAA
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* * ***
83755878 TAATTTTACAA-ACCAGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* *
83755905 TAATTTTACAA-ACCAGGGGTATTT
1 TAATTTTACAAGTCGAGGGGTATTT
83755929 TGGTAATTTT
Statistics
Matches: 112, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 25 0.22
27 87 0.78
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (28 bp):
TAATTTTACAAGTCGAGGGGTATTTCAA
Found at i:83756186 original size:27 final size:27
Alignment explanation
Indices: 83755824--83756179 Score: 473
Period size: 27 Copynumber: 13.2 Consensus size: 27
83755814 GGTATTTCAA
* *
83755824 TAATTTCACAAATCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* **
83755851 TAATTTTACAAACTAGGGGTATTTTAA
1 TAATTTTACAAACCAGGGGTATTTTGG
83755878 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
83755905 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * * *
83755932 TAATTTTATAAACAAAGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
* *
83755959 TAATTTGT--AAACCAAGGGTACTTTGG
1 TAATTT-TACAAACCAGGGGTATTTTGG
83755985 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
** * *
83756012 TAATTTTGTAAACCAAGGGTACTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
83756039 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * * *
83756066 TGATTTTATAAACCAAGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
83756093 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * * *
83756120 TAATTTTATAAACTAAGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
*
83756147 AAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
83756174 TAATTT
1 TAATTT
83756180 GGTAAACTAA
Statistics
Matches: 283, Mismatches: 43, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
25 1 0.00
26 21 0.07
27 260 0.92
28 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAACCAGGGGTATTTTGG
Found at i:83760357 original size:47 final size:48
Alignment explanation
Indices: 83760289--83760513 Score: 212
Period size: 47 Copynumber: 4.8 Consensus size: 48
83760279 CCACATTATG
* * * *
83760289 AGAGCCAATGCAAGACCATGTCTGGGACATGGCATCGGTGTTGAGACA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTCTCGAGACA
* * * * *
83760337 AGAGCTAGGGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTCTCGAGAC-A
* * **
83760384 A-AGCCAATGTAAGA-CATGTTTGGGACAT-GCATCGG-CTACGAGATG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTCT-CGAGACA
* * * * *
83760429 ATAGTCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTCTCGAGACA
*
83760476 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
83760514 CACCTTACCC
Statistics
Matches: 146, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
45 3 0.02
46 58 0.40
47 66 0.45
48 19 0.13
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (48 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTCTCGAGACA
Found at i:83760505 original size:140 final size:141
Alignment explanation
Indices: 83760253--83760514 Score: 350
Period size: 140 Copynumber: 1.9 Consensus size: 141
83760243 TGAGCTAGTA
*
83760253 TAAGACATGTTTAGGACATGCATCAGCCACATTATGAGAGCCAATGCAAGACCATGTCTGGGACA
1 TAAGACATGTTTAGGACATGCATCAGCCACATGATGAGAGCCAATGCAAGACCATGTCTGGGACA
** *
83760318 TGGCATCGGTGTTGAGACAAGAGCTAGGGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGAC
66 TGGCATCGGACTTGAGACAAGAGCCAGGGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGAC
83760382 GTAAGCCAATG
131 GTAAGCCAATG
* * * * * * *
83760393 TAAGACATGTTTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTGGGAC
1 TAAGACATGTTTAGGACATGCATCAGCCAC-ATGATGAGAGCCAATGCAAGACCATGTCTGGGAC
* * * *
83760457 ATGGCATC-GACTTGAGATATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65 ATGGCATCGGACTTGAGACAAGAGCCAGGGTAAGA-CATGTCTAGGACATGGCATCGGC
83760515 ACCTTACCCA
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
139 20 0.19
140 75 0.72
141 9 0.09
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (141 bp):
TAAGACATGTTTAGGACATGCATCAGCCACATGATGAGAGCCAATGCAAGACCATGTCTGGGACA
TGGCATCGGACTTGAGACAAGAGCCAGGGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGAC
GTAAGCCAATG
Found at i:83761537 original size:40 final size:40
Alignment explanation
Indices: 83761482--83761568 Score: 156
Period size: 40 Copynumber: 2.2 Consensus size: 40
83761472 ATGTTTTTAC
*
83761482 ACACGGGCTAGGACACGGGCGTGTCGTGGTCGTGGGAGGG
1 ACACGGGCTAGGACACGGGCGTGTCGTGGCCGTGGGAGGG
*
83761522 ACACGGGCTAGGACACGGGCGTGTCGTGGCCGTGTGAGGG
1 ACACGGGCTAGGACACGGGCGTGTCGTGGCCGTGGGAGGG
83761562 ACACGGG
1 ACACGGG
83761569 TGTGTGTCTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.16, C:0.22, G:0.48, T:0.14
Consensus pattern (40 bp):
ACACGGGCTAGGACACGGGCGTGTCGTGGCCGTGGGAGGG
Found at i:83775388 original size:39 final size:39
Alignment explanation
Indices: 83775326--83775453 Score: 220
Period size: 39 Copynumber: 3.3 Consensus size: 39
83775316 AACCCGAAAT
* *
83775326 CTAACTGTAGCACATAAGTGCTAAACGGAAGACTGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCTGAAGG
* *
83775365 CTAATTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCTGAAGG
83775404 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCTGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCTGAAGG
83775443 CTAACTGAAGC
1 CTAACTGAAGC
83775454 TCATCAGAGT
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.16
Consensus pattern (39 bp):
CTAACTGAAGCACATAAGTGCTAAACGGAAGCCTGAAGG
Found at i:83775509 original size:20 final size:19
Alignment explanation
Indices: 83775444--83775509 Score: 51
Period size: 21 Copynumber: 3.2 Consensus size: 19
83775434 GCCTGAAGGC
*
83775444 TAACTGAAGCTCATCAGAGT
1 TAACTGAAACTCAT-AGAGT
* * *
83775464 TGAACTGAAACCCCAAAAGGGT
1 T-AACTGAAA-CTC-ATAGAGT
83775486 TAACTGAAACTCATATGAGT
1 TAACTGAAACTCATA-GAGT
83775506 TAAC
1 TAAC
83775510 AGAAGCTCGT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
19 2 0.06
20 10 0.29
21 15 0.43
22 7 0.20
23 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (19 bp):
TAACTGAAACTCATAGAGT
Found at i:83782095 original size:7 final size:7
Alignment explanation
Indices: 83782078--83782112 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
83782068 CAAAACAAAC
*
83782078 TTAAAAA
1 TTAAAAG
*
83782085 TTAAATG
1 TTAAAAG
83782092 TTAAAAG
1 TTAAAAG
83782099 TTAAAAG
1 TTAAAAG
83782106 TTAAAAG
1 TTAAAAG
83782113 GGAAGTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (7 bp):
TTAAAAG
Found at i:83788324 original size:93 final size:93
Alignment explanation
Indices: 83788162--83788332 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
83788152 GGATGGTTGA
* * * *
83788162 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGA
83788227 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
83788255 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGA
83788320 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
83788333 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGA
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83788335 original size:46 final size:46
Alignment explanation
Indices: 83788166--83788337 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
83788156 GGTTGAGCAT
* * * *
83788166 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * *
83788212 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
83788257 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
83788305 CCGAGCTCGTTGAGATGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83788338 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.26
48 5 0.05
50 6 0.06
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:83792975 original size:81 final size:81
Alignment explanation
Indices: 83792833--83792985 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
83792823 CATACATGCC
* ** ** * *
83792833 CCTATTTGTACTTTGGTACCCCTAAATTGCAGTTACGCGCCCCTGTTTGTACTTCGGTACCCCTG
1 CCTATTTGTACTTCGGTACCCCTAAATTGCACATACGCGCCCCTAATTATACTTCAGTACCCCTG
83792898 AATTGCACATGAGTGG
66 AATTGCACATGAGTGG
* * * * *
83792914 CCTATTTGTACTTCGGTACCCCTAAATTGCACATATGTGCCCCTAATTATACTTTATTACCCTTG
1 CCTATTTGTACTTCGGTACCCCTAAATTGCACATACGCGCCCCTAATTATACTTCAGTACCCCTG
83792979 AATTGCA
66 AATTGCA
83792986 TATACATGCC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 60 1.00
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.35
Consensus pattern (81 bp):
CCTATTTGTACTTCGGTACCCCTAAATTGCACATACGCGCCCCTAATTATACTTCAGTACCCCTG
AATTGCACATGAGTGG
Found at i:83793008 original size:41 final size:41
Alignment explanation
Indices: 83792814--83793022 Score: 215
Period size: 41 Copynumber: 5.1 Consensus size: 41
83792804 AGAATATTAT
* *
83792814 TGAACTGCACATACATGCCCCTATTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCC
* ** * * *
83792855 TAAATTGCAGTTACGCGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCC
* *
83792896 TGAATTGCACATGA-GTG-GCCTATTTGTACTTCGGTACCCC
1 TGAATTGCACAT-ACGTGCCCCTATTTGTACTTTGGTACCCC
* * * * ** *
83792936 TAAATTGCACATATGTGCCCCTAATTATACTTTATTACCCT
1 TGAATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCC
* * *
83792977 TGAATTGCATATACATGCCCCTGTTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCC
83793018 TGAAT
1 TGAAT
83793023 GTGCTTGGGT
Statistics
Matches: 133, Mismatches: 32, Indels: 6
0.78 0.19 0.04
Matches are distributed among these distances:
39 1 0.01
40 35 0.26
41 96 0.72
42 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.34
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCC
Found at i:83793019 original size:20 final size:20
Alignment explanation
Indices: 83792994--83793052 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
83792984 CATATACATG
*
83792994 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTGGGTA
** *
83793014 CCCCTGAATGTGCTTGGGTA
1 CCCCTGTTTGTACTTGGGTA
83793034 -CCCTGTTTAG-ACTTGGGTA
1 CCCCTGTTT-GTACTTGGGTA
83793053 ATTTTGAATC
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.14, C:0.24, G:0.25, T:0.37
Consensus pattern (20 bp):
CCCCTGTTTGTACTTGGGTA
Found at i:83794939 original size:40 final size:40
Alignment explanation
Indices: 83794894--83795060 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
83794884 CGGAATATAA
83794894 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
83794934 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
83794974 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
83795014 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
83795053 CCGGATAT
1 CCGGATAT
83795061 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:83795044 original size:80 final size:79
Alignment explanation
Indices: 83794894--83795060 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
83794884 CGGAATATAA
* *
83794894 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
83794959 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
83794974 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
83795036 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
83795053 CCGGATAT
1 CCGGATAT
83795061 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:83795909 original size:17 final size:19
Alignment explanation
Indices: 83795886--83795931 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
83795876 AAGAAGCATG
83795886 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
83795904 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
83795922 AATCATGCTC
1 AATCATGCTC
83795932 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:83800096 original size:27 final size:27
Alignment explanation
Indices: 83800080--83800427 Score: 464
Period size: 27 Copynumber: 12.8 Consensus size: 27
83800070 CAATTTGTAA
83800080 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
83800107 AATTACCATTTTTTACCCTCTATTTACAG
1 AATTACCA--TTTTACCCTCGATTTACAG
*
83800136 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
83800163 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
83800190 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
* *
83800217 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
* *
83800244 AATGACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
* * * * *
83800271 AATTACCGTTTCACCATCAATTTACAA
1 AATTACCATTTTACCCTCGATTTACAG
** *
83800298 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
* *
83800325 AATTACCATTTTACCCTTGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAG
* *
83800352 AATTACCATTTTACCCTCAATTTACAA
1 AATTACCATTTTACCCTCGATTTACAG
*
83800379 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTACAG
** *
83800406 AATTACTGTTTTACCCTAGATT
1 AATTACCATTTTACCCTCGATT
83800428 GTGAAATTAC
Statistics
Matches: 286, Mismatches: 31, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.00
27 258 0.90
28 1 0.00
29 26 0.09
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:83800589 original size:27 final size:27
Alignment explanation
Indices: 83800419--83800584 Score: 226
Period size: 27 Copynumber: 6.1 Consensus size: 27
83800409 TACTGTTTTA
* * **
83800419 CCCTAGATTGTGAAATTACTGAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
83800446 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
83800473 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
*
83800500 CCCTAGTTTATAAAATTACCAAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
* * * *
83800527 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCTAGTTTGTAAAATTACCAAAATAC
*
83800553 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-AGTTTGTAAAATTACCAAAATAC
83800581 CCCT
1 CCCT
83800585 GATTTACAAA
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 3 0.02
27 115 0.94
28 4 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
CCCTAGTTTGTAAAATTACCAAAATAC
Found at i:83800608 original size:54 final size:53
Alignment explanation
Indices: 83800431--83800610 Score: 179
Period size: 54 Copynumber: 3.3 Consensus size: 53
83800421 CTAGATTGTG
* * *
83800431 AAATTACTGAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACAGAAATACCCTCTAATTTGTAAAATTACCAAAATACCCCT-GATT-TA
* * * * *
83800485 AAATTACCA-AAATACCC-CTAGTTTATAAAATTACCAAAATACCACTGGTTTGTG
1 AAATTA-CAGAAATACCCTCTAATTTGTAAAATTACCAAAATACCCCT-GATT-TA
*
83800539 AAATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATTTA
1 AAATTACAGAAATACCCTCTAATTTGTAAAATTACCAAAATACCCCTGATTTA
*
83800591 CAAAGTTACAGATATACCCT
1 -AAA-TTACAGAAATACCCT
83800611 TGACTTTCTA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
52 1 0.01
53 7 0.06
54 98 0.91
55 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (53 bp):
AAATTACAGAAATACCCTCTAATTTGTAAAATTACCAAAATACCCCTGATTTA
Found at i:83804173 original size:23 final size:23
Alignment explanation
Indices: 83804140--83804250 Score: 206
Period size: 23 Copynumber: 4.9 Consensus size: 23
83804130 TATCGCAAAC
83804140 AACT-GGGCATAAGCCCTTTAAT
1 AACTGGGGCATAAGCCCTTTAAT
83804162 AACTGGGGCATAAGCCCTTTAAT
1 AACTGGGGCATAAGCCCTTTAAT
*
83804185 AACTAGGGCATAAGCCCTTTAAT
1 AACTGGGGCATAAGCCCTTTAAT
83804208 AACTGGGGCATAAGCCCTTTAAT
1 AACTGGGGCATAAGCCCTTTAAT
83804231 AACTGGGGCATAAGCCCTTT
1 AACTGGGGCATAAGCCCTTT
83804251 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
22 4 0.05
23 82 0.95
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (23 bp):
AACTGGGGCATAAGCCCTTTAAT
Found at i:83804326 original size:20 final size:20
Alignment explanation
Indices: 83804301--83804367 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
83804291 TTATGATTAC
*
83804301 ATCATGTGCATATCATACGT
1 ATCATGTGCATATCATACAT
*
83804321 ATCATGTGCTTATCATACAT
1 ATCATGTGCATATCATACAT
*
83804341 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
83804361 ACCATGT
1 ATCATGT
83804368 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:83808439 original size:27 final size:27
Alignment explanation
Indices: 83808409--83808506 Score: 74
Period size: 27 Copynumber: 3.6 Consensus size: 27
83808399 GTAAATCTAC
83808409 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
* *
83808436 AAACCAATGGTGTTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* * * *
83808462 AGAAAGTCAAAGGTATATCTATAACTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
83808492 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
83808507 TGGTAATTTT
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
26 1 0.02
27 30 0.54
28 7 0.12
29 17 0.30
30 1 0.02
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:83808559 original size:53 final size:54
Alignment explanation
Indices: 83808496--83808627 Score: 160
Period size: 54 Copynumber: 2.5 Consensus size: 54
83808486 CTTTGTAAAT
*
83808496 CAGGGGTATTTTGGTAATTTTACAAA-TTGAAGGTA-TTCGGTAATTTCACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAG-AGGTATTTCGGTAATTTCACAAAC
* * * *
83808549 CAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTCGGTAATTTCACAAAC
* ** *
83808603 TAGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTTTACAA
83808628 TCGAGGGTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 29 0.43
54 38 0.57
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTCGGTAATTTCACAAAC
Found at i:83808634 original size:27 final size:27
Alignment explanation
Indices: 83808497--83808634 Score: 145
Period size: 27 Copynumber: 5.1 Consensus size: 27
83808487 TTTGTAAATC
*
83808497 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAA-CG
* * * *
83808525 A-AGGTA-TTCGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACG
* *
83808550 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACG
*
83808577 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACG
** * *
83808604 AGGGGTATTTCAGTAATTTCACAATCG
1 AGGGGTATTTTGGTAATTTTACAAACG
83808631 AGGG
1 AGGG
83808635 TAAAATGGTA
Statistics
Matches: 93, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
25 1 0.01
26 19 0.20
27 72 0.77
28 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACG
Found at i:83808656 original size:80 final size:81
Alignment explanation
Indices: 83808487--83808661 Score: 205
Period size: 80 Copynumber: 2.2 Consensus size: 81
83808477 TATCTATAAC
* *
83808487 TTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTCGGTAATTTCACAAACCA
1 TTTGTAAACTCAGGGGTATTTTGGTAATTTTACAAATAGAAGGTATTCAGTAATTTCACAAACCA
***
83808551 GTGGTATTTTGGTAAT
66 GTGGTAAAATGGTAAT
** * *
83808567 TTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCAGTAATTTCACAATC
1 TTTGTAAACTCAGGGGTATTTTGGTAATTTTACAAA-TAGAAGGTA-TTCAGTAATTTCACAAAC
*
83808630 GAG-GGTAAAATGGTAAT
64 CAGTGGTAAAATGGTAAT
*
83808647 TTTGTAAACTGAGGG
1 TTTGTAAACTCAGGG
83808662 TAAAATGGTA
Statistics
Matches: 79, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
80 54 0.68
81 25 0.32
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.37
Consensus pattern (81 bp):
TTTGTAAACTCAGGGGTATTTTGGTAATTTTACAAATAGAAGGTATTCAGTAATTTCACAAACCA
GTGGTAAAATGGTAAT
Found at i:83808987 original size:27 final size:27
Alignment explanation
Indices: 83808626--83808973 Score: 475
Period size: 27 Copynumber: 12.8 Consensus size: 27
83808616 GTAATTTCAC
*
83808626 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
83808653 AA-CTGAGGGTAAAATGGTAAATT-TGTA
1 AATC-GAGGGTAAAATGGT-AATTCTGTA
* *
83808680 AATCGAGGGTAAAACGGTAATCCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
83808707 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
** * *
83808734 AATAAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * * *
83808761 AATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
83808788 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
83808815 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
83808842 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
83808869 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
83808896 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
83808923 AATAGAGGGTAAAAAATGGTAATTCTGTA
1 AATCGAGGGT--AAAATGGTAATTCTGTA
83808952 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAATGGTAATT
83808974 TTACAAATTG
Statistics
Matches: 287, Mismatches: 28, Indels: 12
0.88 0.09 0.04
Matches are distributed among these distances:
26 4 0.01
27 253 0.88
28 5 0.02
29 25 0.09
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:83815460 original size:93 final size:93
Alignment explanation
Indices: 83815301--83815471 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
83815291 GGATGGTTGA
* *
83815301 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCTGAACTCGTTGAGT
83815366 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
83815394 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCTGAACTCGTTGAGT
83815459 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
83815472 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83815474 original size:46 final size:46
Alignment explanation
Indices: 83815307--83815476 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
83815297 TTGAGCATCC
* * *
83815307 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
* * * *
83815353 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CT
83815400 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
*
83815446 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83815477 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 57 0.55
47 27 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
Found at i:83820302 original size:16 final size:16
Alignment explanation
Indices: 83820281--83820317 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
83820271 CCGTGAGTAC
83820281 CGTGTGGCTATATGAT
1 CGTGTGGCTATATGAT
83820297 CGTGTGGCTATATGAT
1 CGTGTGGCTATATGAT
83820313 CGTGT
1 CGTGT
83820318 CGTACGATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.16, C:0.14, G:0.32, T:0.38
Consensus pattern (16 bp):
CGTGTGGCTATATGAT
Found at i:83826302 original size:46 final size:46
Alignment explanation
Indices: 83826249--83826421 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
83826239 TGGTTGAGCA
83826249 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
83826295 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
83826340 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
83826388 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83826422 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83826405 original size:93 final size:93
Alignment explanation
Indices: 83826246--83826416 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
83826236 GGATGGTTGA
* * *
83826246 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83826311 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
83826339 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83826404 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
83826417 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83832362 original size:40 final size:40
Alignment explanation
Indices: 83832236--83832363 Score: 116
Period size: 40 Copynumber: 3.2 Consensus size: 40
83832226 CAATTGAATG
* * * * * ***
83832236 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGGTT
* *
83832276 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGGTT
* *
83832316 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GCGGTT
83832356 ATATCCGG
1 ATATCCGG
83832364 TTGTATTCCG
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 4 0.06
40 67 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGGTT
Found at i:83840282 original size:41 final size:40
Alignment explanation
Indices: 83840186--83840297 Score: 147
Period size: 41 Copynumber: 2.8 Consensus size: 40
83840176 TGGAAATTAT
* *
83840186 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGGCTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGCGGCTAC
*
83840226 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTCTA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-CG-GCTAC
*
83840267 GTCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
83840298 CGTGGTTATA
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
39 3 0.05
40 27 0.42
41 32 0.49
42 3 0.05
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGCGGCTAC
Found at i:83842125 original size:46 final size:45
Alignment explanation
Indices: 83841979--83842151 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
83841969 GGTTGAGCAT
* *
83841979 CCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGC
* * *
83842024 CCGAACTCGTTGAGTTGAGTCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAAC---GC
83842068 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGC
*
83842116 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGG
83842152 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 27 0.25
46 55 0.50
47 7 0.06
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGC
Found at i:83842131 original size:92 final size:92
Alignment explanation
Indices: 83841975--83842143 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
83841965 GGATGGTTGA
* *
83841975 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
83842040 GAGT-CGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
83842066 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83842131 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
83842144 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 24 0.33
92 42 0.58
93 7 0.10
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83845072 original size:15 final size:15
Alignment explanation
Indices: 83845052--83845120 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
83845042 GTATCTTGGG
83845052 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
83845067 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
83845082 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
83845097 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
83845112 TTTCTTTAT
1 TTTCTTTAT
83845121 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:83845121 original size:30 final size:30
Alignment explanation
Indices: 83845043--83845130 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
83845033 CATAGTATCG
* * * *
83845043 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
83845073 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
83845103 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
83845131 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:83847560 original size:46 final size:46
Alignment explanation
Indices: 83847510--83847685 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
83847500 TGGTTGAGCA
83847510 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83847556 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
83847601 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83847649 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83847686 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83847666 original size:93 final size:93
Alignment explanation
Indices: 83847507--83847678 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
83847497 GGATGGTTGA
* *
83847507 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83847572 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
83847600 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83847665 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
83847679 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83850823 original size:47 final size:47
Alignment explanation
Indices: 83850769--83850961 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
83850759 TTAGGATTTT
** * *
83850769 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83850816 ATGTGATGAATGTGAA-ATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
83850862 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
83850909 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83850956 ATGTGA
1 ATGTGA
83850962 AATATGTATG
Statistics
Matches: 134, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
46 42 0.31
47 92 0.69
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:83850874 original size:93 final size:94
Alignment explanation
Indices: 83850769--83850961 Score: 289
Period size: 93 Copynumber: 2.1 Consensus size: 94
83850759 TTAGGATTTT
** * *
83850769 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-A
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
*
83850833 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAAGCCGAATGGCCA
* * *
83850862 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
* *
83850927 TGCATATATGTGGTAAAGCCGAATGGCTA
66 TGCATATATGTGATAAAGCCGAATGGCCA
83850956 ATGTGA
1 ATGTGA
83850962 AATATGTATG
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
93 56 0.63
94 33 0.37
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
TGCATATATGTGATAAAGCCGAATGGCCA
Found at i:83851218 original size:37 final size:37
Alignment explanation
Indices: 83851168--83851239 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
83851158 GGAAATATAT
* *
83851168 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCAATAACTACGTGTGGAGATTTTG
*
83851205 TCCGGGTAAGACCCAATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCAATAACTACGTGTGGAGATTT
83851240 CGCCTGAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCAATAACTACGTGTGGAGATTTTG
Found at i:83884326 original size:55 final size:54
Alignment explanation
Indices: 83884209--83884397 Score: 222
Period size: 55 Copynumber: 3.5 Consensus size: 54
83884199 ATAAGGATAT
* * * * * *
83884209 CATGTAAGACTATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC-AAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGG-TAC
*
83884263 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGCAAAGGTAC
* * * *
83884318 CATGTAAGACCATGCTAAAG-CAAGGCATTGGTGAGTTC-ATAAGGCAAGGGTAC
1 CATGTAAGACCATG-TCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTAC
*
83884371 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGTCAAGACATGGCA
83884398 ATGGTAAGTT
Statistics
Matches: 116, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
52 4 0.03
53 32 0.28
54 34 0.29
55 38 0.33
56 8 0.07
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTAC
Found at i:83884408 original size:53 final size:54
Alignment explanation
Indices: 83884209--83884408 Score: 224
Period size: 53 Copynumber: 3.7 Consensus size: 54
83884199 ATAAGGATAT
* * * ** *
83884209 CATGTAAGACTATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGGTAC
* * *
83884263 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGCAAGGGTAC
* * * *
83884318 CATGTAAGACCATGCTAAAG-CAAGGCATTGGTGAGTTC-ATAAGGCAAGGGTAC
1 CATGTAAGACCATG-TCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGGTAC
* * *
83884371 CACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTC
83884409 GAAAAGGAAA
Statistics
Matches: 124, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 41 0.33
54 34 0.27
55 41 0.33
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGGTAC
Found at i:83884423 original size:108 final size:109
Alignment explanation
Indices: 83884209--83884419 Score: 264
Period size: 108 Copynumber: 2.0 Consensus size: 109
83884199 ATAAGGATAT
* * * * *
83884209 CATGTAAGACTATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAAGCAAGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * * * *
83884274 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTACGAAAAGGAAAAGGTCC
* * * **
83884318 CATGTAAGACCATGCTAAAGCAAGGCATTGGTGAGTTC-ATAAGGCAAGGGTACCACGTAAGACC
1 CATGTAAGACCATGCCAAAGCAAGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
*
83884382 ATGTCAAGACATGGCAATGGTAAGTT-CGAAAAGGAAAA
66 ATGTCAAGACATGGCAATGATAAGTTACGAAAAGGAAAA
83884420 AGGTTCCTAA
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
107 9 0.10
108 45 0.52
109 32 0.37
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAAGCAAGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACGAAAAGGAAAAGGTCC
Found at i:83889567 original size:96 final size:95
Alignment explanation
Indices: 83889403--83889593 Score: 355
Period size: 96 Copynumber: 2.0 Consensus size: 95
83889393 TGAATCTGTG
83889403 CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCAGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
1 CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCAGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
*
83889468 AGTAGAATTTGGCATTGAATTGGTACTTGGT
66 AGTAGAATTT-GCACTGAATTGGTACTTGGT
*
83889499 CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCTGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
1 CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCAGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
83889564 AGTAGAATTTGCACTGAATTGGTACTTGGT
66 AGTAGAATTTGCACTGAATTGGTACTTGGT
83889594 ACTACTCCGG
Statistics
Matches: 93, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
95 19 0.20
96 74 0.80
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.39
Consensus pattern (95 bp):
CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCAGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
AGTAGAATTTGCACTGAATTGGTACTTGGT
Found at i:83892384 original size:38 final size:38
Alignment explanation
Indices: 83892336--83892459 Score: 151
Period size: 38 Copynumber: 3.2 Consensus size: 38
83892326 GGCATGAAGG
* * *
83892336 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAC
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
83892374 CCCGGATATAATACCAGCA-TGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTGCGGGATTTAA
** * *
83892412 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGG-ATTTAA
83892451 GCCCGGATA
1 -CCCGGATA
83892460 CACATCAAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
37 1 0.01
38 61 0.81
39 5 0.07
40 8 0.11
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
Found at i:83912653 original size:49 final size:49
Alignment explanation
Indices: 83912462--83912631 Score: 331
Period size: 49 Copynumber: 3.5 Consensus size: 49
83912452 ATACTAAAAT
83912462 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
83912511 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
83912560 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
*
83912609 ATGTGAAAGTGTATGCATATGTG
1 ATGTGAAAGTGTATGTATATGTG
83912632 GTAAAGCCGA
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 120 1.00
ACGTcount: A:0.27, C:0.08, G:0.34, T:0.31
Consensus pattern (49 bp):
ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
Found at i:83912653 original size:98 final size:98
Alignment explanation
Indices: 83912462--83912653 Score: 312
Period size: 98 Copynumber: 2.0 Consensus size: 98
83912452 ATACTAAAAT
*
83912462 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGT
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGC
* * * * *
83912527 ATATGTGATGAGGCCTAATGGCCGATGTGGTGA
66 ATATGTGATAAAGCCGAACGGCCAATGTGGTGA
83912560 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGC
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGC
* *
83912625 ATATGTGGTAAAGCCGAACGGCTAATGTG
66 ATATGTGATAAAGCCGAACGGCCAATGTG
83912654 AATGTTGTAA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 86 1.00
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.30
Consensus pattern (98 bp):
ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGC
ATATGTGATAAAGCCGAACGGCCAATGTGGTGA
Found at i:83912750 original size:37 final size:37
Alignment explanation
Indices: 83912700--83912821 Score: 235
Period size: 37 Copynumber: 3.3 Consensus size: 37
83912690 GGAATATGTT
83912700 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
83912737 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
83912774 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
83912811 CCGGGTAAGAC
1 CCGGGTAAGAC
83912822 TTCTTTTATA
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 84 1.00
ACGTcount: A:0.26, C:0.20, G:0.33, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:83914671 original size:40 final size:40
Alignment explanation
Indices: 83914589--83914673 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
83914579 AGAATTGAGA
** * * *
83914589 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
* *
83914629 AGTGATGTATCCGGGCTAGGCCCCGAAGAGCAATCATACT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
83914669 AGTGA
1 AGTGA
83914674 CGTGTATTCG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
Found at i:83914934 original size:29 final size:29
Alignment explanation
Indices: 83914902--83915004 Score: 188
Period size: 29 Copynumber: 3.6 Consensus size: 29
83914892 CGTTAACCGA
83914902 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
83914931 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
83914960 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
83914989 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
83915005 TTTTTCAACA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATCGAG
Found at i:83914941 original size:58 final size:58
Alignment explanation
Indices: 83914870--83915003 Score: 184
Period size: 58 Copynumber: 2.3 Consensus size: 58
83914860 CGAATGATTA
83914870 GAGGCACTGTGTGTGC-AAATTTC-GTTAACCGA-GCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAAA--TCAG-TAACCGAGGCACTATGTGTGCGAGATCAGTAATC
* * * *
83914928 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
83914986 GAGGCACTGTGTGTGCGA
1 GAGGCACTGTGTGTGCGA
83915004 GTTTTTCAAC
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
57 8 0.12
58 58 0.85
59 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:83918568 original size:55 final size:49
Alignment explanation
Indices: 83918449--83918569 Score: 224
Period size: 49 Copynumber: 2.5 Consensus size: 49
83918439 ATACTAAAAT
*
83918449 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGTCGATGTGGTGA
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
83918498 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
*
83918547 ATGTGAAAGTGTATGCATATGTG
1 ATGTGAAAGTGTATGTATATGTG
83918570 GTAAAGCCGA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.27, C:0.07, G:0.34, T:0.32
Consensus pattern (49 bp):
ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
Found at i:83918688 original size:37 final size:37
Alignment explanation
Indices: 83918638--83918759 Score: 235
Period size: 37 Copynumber: 3.3 Consensus size: 37
83918628 GGAATATGTT
83918638 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
83918675 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
83918712 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
83918749 CCGGGTAAGAC
1 CCGGGTAAGAC
83918760 TTCTTTTATA
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 84 1.00
ACGTcount: A:0.26, C:0.20, G:0.33, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:83920151 original size:37 final size:37
Alignment explanation
Indices: 83920101--83920172 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
83920091 AATAAAGAAA
83920101 TAAAATAGTAGGTGGGTGAAAACAACAAAGTATTCGC
1 TAAAATAGTAGGTGGGTGAAAACAACAAAGTATTCGC
83920138 TAAAATAGTAGGTGGGTGAAAACAACAAAGTATTC
1 TAAAATAGTAGGTGGGTGAAAACAACAAAGTATTC
83920173 ACCTTGTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.22
Consensus pattern (37 bp):
TAAAATAGTAGGTGGGTGAAAACAACAAAGTATTCGC
Found at i:83921523 original size:40 final size:40
Alignment explanation
Indices: 83921463--83921575 Score: 140
Period size: 40 Copynumber: 2.8 Consensus size: 40
83921453 TATTCGGATG
*
83921463 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
* *
83921503 ATATTCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
* **
83921543 ATAACCGGGTTAAG-TCCCGAAGGC-ATTCGTGCT
1 ATATCCGGACTAAGAT-CCGAAGGCAATT-GTGCT
83921576 GGTTGTTACA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.06
40 60 0.94
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
Found at i:83922124 original size:13 final size:13
Alignment explanation
Indices: 83922106--83922133 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
83922096 CTCTTTTAGT
83922106 TGAACTTTGATAA
1 TGAACTTTGATAA
83922119 TGAACTTTGATAA
1 TGAACTTTGATAA
83922132 TG
1 TG
83922134 GCATGTATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (13 bp):
TGAACTTTGATAA
Found at i:83926105 original size:38 final size:38
Alignment explanation
Indices: 83926063--83926158 Score: 156
Period size: 38 Copynumber: 2.5 Consensus size: 38
83926053 TTAAGCTCGA
* * *
83926063 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTACAGGATTTAACCCGG
83926101 ATATAATACCAGCACGAAGCCTACAGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTACAGGATTTAACCCGG
*
83926139 ATATAATACCAACACGAAGC
1 ATATAATACCAGCACGAAGC
83926159 TGCAGACCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.19
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTACAGGATTTAACCCGG
Found at i:83935442 original size:41 final size:41
Alignment explanation
Indices: 83935388--83935470 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
83935378 TGATGTATGA
*
83935388 GAATGATTGCTTGAGGTTGATAAATGTAAGCTATGTGTTAT
1 GAATGATTGCTTGAGGTTGATAAATGTAAGCTACGTGTTAT
83935429 GAATGATTGCTTGAGGTTGATAAATGTAAGCTACGTGTTAT
1 GAATGATTGCTTGAGGTTGATAAATGTAAGCTACGTGTTAT
83935470 G
1 G
83935471 TTTTGATCGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.29, C:0.06, G:0.28, T:0.37
Consensus pattern (41 bp):
GAATGATTGCTTGAGGTTGATAAATGTAAGCTACGTGTTAT
Found at i:83937604 original size:42 final size:42
Alignment explanation
Indices: 83937557--83937668 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 42
83937547 TGAGCTTACG
*
83937557 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA-CTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATC-CCA
* * * *
83937599 TGTAAGAGCATAGCTAGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATCCCA
*
83937642 TGTCAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
83937669 TAGTATGGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 23 0.40
43 34 0.59
44 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
Found at i:83937780 original size:20 final size:20
Alignment explanation
Indices: 83937755--83937793 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
83937745 AATGTTTAAG
83937755 TTGTGAAAAACTATGGTATT
1 TTGTGAAAAACTATGGTATT
* *
83937775 TTGTGAAAGATTATGGTAT
1 TTGTGAAAAACTATGGTAT
83937794 GTTGCAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.23, T:0.41
Consensus pattern (20 bp):
TTGTGAAAAACTATGGTATT
Found at i:83943554 original size:43 final size:43
Alignment explanation
Indices: 83943405--83943555 Score: 143
Period size: 43 Copynumber: 3.5 Consensus size: 43
83943395 TCTTAGACGT
* *
83943405 GGTCTTACATGAAATCACATGTCGATGCC-ACTGTCCCAGACAG
1 GGTCTTACATGAAATCACATATTGATGCCAAC-GTCCCAGACAG
* * * * *
83943448 GGTCTTAAACG-AATCACA-ATTATGATGCCAATGTCCTAGACAT
1 GGTCTTACATGAAATCACATA-T-TGATGCCAACGTCCCAGACAG
83943491 GGTCTTAC-TCGAAATCACATATTGATGCCAACGTCCCAGAC-G
1 GGTCTTACAT-GAAATCACATATTGATGCCAACGTCCCAGACAG
83943533 AGGTCTTACATGAGAA-CACATAT
1 -GGTCTTACATGA-AATCACATAT
83943556 CAGAAATCCT
Statistics
Matches: 87, Mismatches: 12, Indels: 18
0.74 0.10 0.15
Matches are distributed among these distances:
42 8 0.09
43 66 0.76
44 12 0.14
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGAAATCACATATTGATGCCAACGTCCCAGACAG
Found at i:83946995 original size:31 final size:31
Alignment explanation
Indices: 83946952--83947026 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
83946942 ATGATTACTA
83946952 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
* * *
83946983 GGCCAAAGCCTTTTCATAAATCATTTCATTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
83947014 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
83947027 ACTGTAAACG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTG
Found at i:83947102 original size:42 final size:42
Alignment explanation
Indices: 83947050--83947141 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
83947040 TGGCCCATAG
* * ** *
83947050 GCCCAATTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
83947092 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
83947134 GCCCATTT
1 GCCCATTT
83947142 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:83947326 original size:26 final size:26
Alignment explanation
Indices: 83947286--83947461 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
83947276 CCTCTTTAAT
* *
83947286 AACTGGGG-AAAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
83947311 AATTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
83947337 AACTGAGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
83947363 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
83947389 AACTGGGGCATAAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
83947415 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
83947441 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
83947462 GCACTTCCTC
Statistics
Matches: 137, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
25 7 0.05
26 130 0.95
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:83948306 original size:27 final size:27
Alignment explanation
Indices: 83948269--83948341 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
83948259 TATTCATCAT
*
83948269 TTTACCATACAGGGGTATTACGGTCAC
1 TTTACCTTACAGGGGTATTACGGTCAC
**
83948296 TTTACCTTACAGGGGCT-TTACGGTCTT
1 TTTACCTTACAGGGG-TATTACGGTCAC
* *
83948323 TTTACCTAATAGGGGTATT
1 TTTACCTTACAGGGGTATT
83948342 TTAGTCATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
26 1 0.03
27 37 0.95
28 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (27 bp):
TTTACCTTACAGGGGTATTACGGTCAC
Found at i:83948412 original size:27 final size:27
Alignment explanation
Indices: 83948382--83948584 Score: 115
Period size: 27 Copynumber: 7.4 Consensus size: 27
83948372 GTAAATCAAC
*
83948382 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
83948409 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
83948435 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * ** **
83948465 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*** * ***
83948492 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
83948519 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * ** *
83948546 AAATCGAGGGTAAAAT-AGTAATTCTGT
1 AAACCAAGGGT-ATTTCAGTAATTTTGT
*
83948573 AAATCAAGGGTA
1 AAACCAAGGGTA
83948585 AAATAGTAAT
Statistics
Matches: 139, Mismatches: 30, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
26 2 0.01
27 110 0.79
28 9 0.06
29 17 0.12
30 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.37
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:83948585 original size:27 final size:27
Alignment explanation
Indices: 83948534--83948746 Score: 230
Period size: 27 Copynumber: 7.9 Consensus size: 27
83948524 AAGGGTATTT
*
83948534 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
83948561 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
83948588 TAGTAATTCTATAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
83948615 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * *
83948642 CGGTAATTCTGTAAGTCGAGGATAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
83948669 -CGATAATTATGTAAATCGGGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
* * * * *
83948696 TGGTTATTATGGAAATCGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
83948723 CAGTAATTCTGTAAATCGGGGGTA
1 TAGTAATTCTGTAAATCGAGGGTA
83948747 CTTTGGTAAT
Statistics
Matches: 160, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 158 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:83948773 original size:27 final size:27
Alignment explanation
Indices: 83948752--83948841 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
83948742 GGGTACTTTG
*
83948752 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
83948779 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
83948806 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
83948833 GTAATTTTA
1 GTAATTTTA
83948842 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:83948793 original size:54 final size:54
Alignment explanation
Indices: 83948735--83948841 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
83948725 GTAATTCTGT
* * *
83948735 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
83948789 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
83948842 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:83948855 original size:27 final size:27
Alignment explanation
Indices: 83948752--83948856 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
83948742 GGGTACTTTG
* *
83948752 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
83948779 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
83948806 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
83948833 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
83948857 CTAAATAGGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:83950198 original size:46 final size:46
Alignment explanation
Indices: 83950105--83950216 Score: 129
Period size: 46 Copynumber: 2.4 Consensus size: 46
83950095 TCGCGTAGCT
* * *
83950105 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCAAGGCC
* *
83950151 GATGCATGTCCCAAATATGTCTTACACTAGTGC-T-CATCTCAATGCC
1 GATGCATGTCCCAAACATGTCTTACACT-G-GCTTACATCTCAAGGCC
*
83950197 GATGCCATGTCCCATACATG
1 GATG-CATGTCCCAAACATG
83950217 GTGTGACAGC
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
46 39 0.70
47 15 0.27
48 2 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCAAGGCC
Found at i:83950934 original size:41 final size:41
Alignment explanation
Indices: 83950877--83951026 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
83950867 TTGGGGTTTA
83950877 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
83950918 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
83950959 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
83950999 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
83951027 TGAGTCAGCG
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:83959766 original size:27 final size:28
Alignment explanation
Indices: 83959710--83959779 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
83959700 AAATTTGTAC
83959710 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83959738 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83959765 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83959780 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:83959790 original size:27 final size:27
Alignment explanation
Indices: 83959710--83959791 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
83959700 AAATTTGTAC
* *
83959710 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
83959738 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
83959765 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
83959792 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:83961258 original size:41 final size:41
Alignment explanation
Indices: 83961201--83961350 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
83961191 TTGGGGTTTA
*
83961201 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCTAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
83961242 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
83961283 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
83961323 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
83961351 TGAGTCAGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 32 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:83968457 original size:41 final size:41
Alignment explanation
Indices: 83968400--83968549 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
83968390 TTGGGGTTTA
83968400 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
83968441 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCGAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * *
83968482 AA-CCGAACCTAGTTTCGAAGGGCCTTCGAGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
83968522 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
83968550 TGAGTCAGCG
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 32 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:83975367 original size:70 final size:70
Alignment explanation
Indices: 83975293--83975640 Score: 547
Period size: 70 Copynumber: 5.0 Consensus size: 70
83975283 TGATTCATAT
* *
83975293 TATAACAACAACATTTTAATTAGCTAAACACCATGAATTTGTCCTAATTTGGACAACCAATAATT
1 TATAACAACAACATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAACCAATAATT
83975358 TACAG
66 TACAG
* * * *
83975363 TATAACAGCAACATATTAATTAGCTAAGCACCATAAATTTGTCCTAATTTGTACAGCCAATAATT
1 TATAACAACAACATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAACCAATAATT
83975428 TACAG
66 TACAG
*
83975433 TATAACAGA-AGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAACCAATAAT
1 TATAACA-ACAACATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAACCAATAAT
*
83975497 TTAAAG
65 TTACAG
* * *
83975503 TATAACAACCACATATTAACTAGCTAAGCACCATGAATTTATCCTAATTTGGACAACCAATAATT
1 TATAACAACAACATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAACCAATAATT
*
83975568 TATAG
66 TACAG
* *
83975573 TATAATAGCAACATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAACCAAT-ATT
1 TATAACAACAACATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAACCAATAATT
83975637 TACA
66 TACA
83975641 ATAGCATATT
Statistics
Matches: 253, Mismatches: 23, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
69 7 0.03
70 246 0.97
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (70 bp):
TATAACAACAACATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAACCAATAATT
TACAG
Found at i:83987716 original size:39 final size:39
Alignment explanation
Indices: 83987673--83987770 Score: 169
Period size: 39 Copynumber: 2.5 Consensus size: 39
83987663 CCGGACATAT
* *
83987673 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
83987712 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
*
83987751 TTCCAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
83987771 GTCTTTAAGC
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
Found at i:83994405 original size:93 final size:92
Alignment explanation
Indices: 83994275--83994445 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
83994265 CGCCCATAAG
* *
83994275 CGAACTCGGACTCAATCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83994340 CGAGCTCGGATGCCTAGTTACATCTCA
66 CGAGCTCGGATGCCTAGTTACATCTCA
*
83994367 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAA-TCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
83994432 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
83994446 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 15 0.20
93 59 0.80
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (92 bp):
CGAACTCGGACTCAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCA
Found at i:83994435 original size:46 final size:46
Alignment explanation
Indices: 83994268--83994442 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
83994258 TGTAACCCGC
* *
83994268 CCATAAGCGAACTCGGACTCAA-TCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
83994313 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
83994363 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
83994406 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
83994443 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 23 0.21
46 42 0.38
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:84004114 original size:16 final size:16
Alignment explanation
Indices: 84004088--84004146 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
84004078 GTAGACCGGC
*
84004088 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATGCCG
* *
84004104 AAAAGTCGAAATACCG
1 AAAAGCCGAAATGCCG
*
84004120 AAAAGCCGAAATGCCA
1 AAAAGCCGAAATGCCG
*
84004136 AAAAGCAGAAA
1 AAAAGCCGAAA
84004147 GTTTGGCTAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.53, C:0.19, G:0.20, T:0.08
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:84004410 original size:28 final size:29
Alignment explanation
Indices: 84004357--84004418 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 29
84004347 GAAAGCATGA
*
84004357 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
84004386 ATATGAATGAGA-TTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
84004414 ATATG
1 ATATG
84004419 CATGTATGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 21 0.66
29 11 0.34
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGGCC
Found at i:84011411 original size:27 final size:28
Alignment explanation
Indices: 84011355--84011424 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
84011345 AAATTTGTAC
84011355 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
84011383 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
84011410 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84011425 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:84011435 original size:27 final size:27
Alignment explanation
Indices: 84011355--84011436 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
84011345 AAATTTGTAC
* *
84011355 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
84011383 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
84011410 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
84011437 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:84013937 original size:21 final size:20
Alignment explanation
Indices: 84013900--84013939 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
84013890 CACTTGAAAT
* *
84013900 AGGGCACACGCCTGTGTGGA
1 AGGGCACACACCCGTGTGGA
84013920 AGGGCAACACACCCGTGTGG
1 AGGGC-ACACACCCGTGTGG
84013940 TTCACTATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (20 bp):
AGGGCACACACCCGTGTGGA
Found at i:84015208 original size:46 final size:48
Alignment explanation
Indices: 84015136--84015493 Score: 137
Period size: 46 Copynumber: 7.6 Consensus size: 48
84015126 ATAATGCTGG
* **
84015136 TGCCATGTCCCAGACATGGT-TATACACTAGCTCATC-ATC-AAGTTAA
1 TGCCATGTCCTAGACATGGTCT-TACACTAGCTCATCAATCGAAGCCAA
* * * *
84015182 TGCCATCTCCTAGACATGGTCTTACACTGGCT-ATCGAAATCGAGGCCGA
1 TGCCATGTCCTAGACATGGTCTTACACTAGCTCATC--AATCGAAGCCAA
* * *
84015231 CGCCATGTCCTAGACATGGTCTTACACTAGCTC-TCACATATCTG-TGCCGA
1 TGCCATGTCCTAGACATGGTCTTACACTAGCTCAT--CA-ATC-GAAGCCAA
* * * * * *
84015281 TGCCATATCCCAGACATGGTCTTACACT-GACACGTC--TCGTAGCTAA
1 TGCCATGTCCTAGACATGGTCTTACACTAG-CTCATCAATCGAAGCCAA
* * * * * * * *
84015327 TG-CATGTCCCAAACAT-GTCTTACATTGGCTTA-CATTTTG-AGTCCGA
1 TGCCATGTCCTAGACATGGTCTTACACTAGCTCATCA-ATCGAAG-CCAA
* * *
84015373 TG-CATGTCCTAGACAT-GTCTTACACTAGCTC-TC-GTCTCAATGCCGA
1 TGCCATGTCCTAGACATGGTCTTACACTAGCTCATCAATC-GAA-GCCAA
* * * ** *
84015419 TGCCATCTCCCAGACATGGTCTTACATTAGCTC-TCATAAT-GTGGCCGA
1 TGCCATGTCCTAGACATGGTCTTACACTAGCTCATC--AATCGAAGCCAA
*
84015467 TG-CATGTCCCAGACAT-GTCTTACACTA
1 TGCCATGTCCTAGACATGGTCTTACACTA
84015494 ACACACAAAT
Statistics
Matches: 241, Mismatches: 44, Indels: 54
0.71 0.13 0.16
Matches are distributed among these distances:
43 1 0.00
44 11 0.05
45 19 0.08
46 82 0.34
47 27 0.11
48 26 0.11
49 36 0.15
50 35 0.15
51 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
TGCCATGTCCTAGACATGGTCTTACACTAGCTCATCAATCGAAGCCAA
Found at i:84015247 original size:49 final size:50
Alignment explanation
Indices: 84015183--84015309 Score: 152
Period size: 50 Copynumber: 2.6 Consensus size: 50
84015173 TCAAGTTAAT
*
84015183 GCCATCTCCTAGACATGGTCTTACACTGGCTATCGA-A-ATC-GAGGCCGAC
1 GCCATATCCTAGACATGGTCTTACACTGGCTATC-ACATATCTG-GGCCGAC
* * * * *
84015232 GCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCGAT
1 GCCATATCCTAGACATGGTCTTACACTGGCTATCACATATCTGGGCCGAC
*
84015282 GCCATATCCCAGACATGGTCTTACACTG
1 GCCATATCCTAGACATGGTCTTACACTG
84015310 ACACGTCTCG
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.01
49 32 0.48
50 33 0.49
51 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (50 bp):
GCCATATCCTAGACATGGTCTTACACTGGCTATCACATATCTGGGCCGAC
Found at i:84018508 original size:40 final size:40
Alignment explanation
Indices: 84018381--84018510 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
84018371 ATGCTGGAAA
* *
84018381 TTATATCTGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
84018421 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
84018461 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
84018501 TTATATCCGG
1 TTATATCCGG
84018511 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:84018509 original size:80 final size:80
Alignment explanation
Indices: 84018343--84018510 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
84018333 CAATTGAATG
* * *
84018343 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCTGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
84018408 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
84018423 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
84018487 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
84018503 ATATCCGG
1 ATATCCGG
84018511 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:84025343 original size:46 final size:46
Alignment explanation
Indices: 84025276--84025458 Score: 262
Period size: 46 Copynumber: 4.0 Consensus size: 46
84025266 TATATATACA
* *
84025276 CATCTCATACA-GATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACG-TTTCACATTAGCCATTCGGCTTTACCACATATC
*
84025322 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCACATATC
*
84025368 CATCTCATACACGTTTCGA-ATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTC-ACATTAGCCATTCGGCTTTACCACATATC
* ** *
84025414 CATCTCATACACATTTTGCATTAGCCATTCGACTTTACCACATAT
1 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCACATAT
84025459 ATACACTTCC
Statistics
Matches: 126, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
46 124 0.98
47 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:84025503 original size:47 final size:47
Alignment explanation
Indices: 84025432--84025763 Score: 477
Period size: 47 Copynumber: 7.1 Consensus size: 47
84025422 ACACATTTTG
* * * * * * *
84025432 CATTAGCCATTCGACTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
84025479 CATTGGCCATTCTGCCTTGTCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
84025526 CATTGGCCATTCGGCCTTGTCACATTTATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
84025573 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
84025620 CATTGGCCAATCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
84025667 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
84025714 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
84025761 CAT
1 CAT
84025764 AAAATCCTAA
Statistics
Matches: 262, Mismatches: 22, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 261 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:84037098 original size:49 final size:48
Alignment explanation
Indices: 84037045--84037267 Score: 367
Period size: 49 Copynumber: 4.6 Consensus size: 48
84037035 GATTTTACGC
*
84037045 GATGAATGTGAATGTGTATATATATGAGATAAGGCCTAATGGCCGAAGT
1 GATGAATGTGAA-GTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
84037094 GATGAATGTGAGAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
1 GATGAATGTGA-AGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
84037143 GATGAATGTGAGAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
1 GATGAATGTGA-AGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
* *
84037192 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
*
84037241 GATGAATGTGAAG-GTGTATATATGTGA
1 GATGAATGTGAAGTGTATATATATGTGA
84037268 CGAATGTGAA
Statistics
Matches: 169, Mismatches: 3, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
47 14 0.08
48 3 0.02
49 150 0.89
50 2 0.01
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (48 bp):
GATGAATGTGAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
Found at i:84037287 original size:72 final size:74
Alignment explanation
Indices: 84037190--84037339 Score: 241
Period size: 72 Copynumber: 2.1 Consensus size: 74
84037180 AATGGCCGAA
* * * * *
84037190 GTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGG
1 GTGACGAATGTGAAAGTGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
84037255 TGTATATAT
66 TGTATATAT
84037264 GTGACGAATGTG-AAG-GTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 GTGACGAATGTGAAAGTGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
84037327 TGTATATAT
66 TGTATATAT
84037336 GTGA
1 GTGA
84037340 TAGGGCCGAG
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 57 0.80
73 3 0.04
74 11 0.15
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (74 bp):
GTGACGAATGTGAAAGTGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATATAT
Found at i:84037304 original size:31 final size:25
Alignment explanation
Indices: 84037237--84037293 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
84037227 CTAATGGCCG
*
84037237 ATGTGATGAATGTGAAGGTGTATAT
1 ATGTGACGAATGTGAAGGTGTATAT
84037262 ATGTGACGAATGTGAAGGTGTATAT
1 ATGTGACGAATGTGAAGGTGTATAT
84037287 ATGTGAC
1 ATGTGAC
84037294 AAGGCCGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.32, C:0.04, G:0.32, T:0.33
Consensus pattern (25 bp):
ATGTGACGAATGTGAAGGTGTATAT
Found at i:84037387 original size:47 final size:47
Alignment explanation
Indices: 84037264--84037390 Score: 173
Period size: 47 Copynumber: 2.7 Consensus size: 47
84037254 GTGTATATAT
* * * *
84037264 GTGACGAATGTGAAGGTGTATATATGTGACAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAC
* *
84037311 GTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAC
* * *
84037358 GTGATGGATGTGAAAGTGTATAAAGGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
84037391 TCCCGAAGGG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.32, C:0.09, G:0.34, T:0.25
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAC
Found at i:84041047 original size:29 final size:28
Alignment explanation
Indices: 84041005--84041076 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 28
84040995 GAATGTGACA
* *
84041005 GGGCTTAATAGGCCATATAAATGTGATTT
1 GGGCTTAATGGGCCATATAAATATGA-TT
* *
84041034 GGGCCTAATGGGCCATATGAATATGATT
1 GGGCTTAATGGGCCATATAAATATGATT
84041062 GGGCTTAATGGGCCA
1 GGGCTTAATGGGCCA
84041077 GATACAGGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
28 16 0.42
29 22 0.58
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
GGGCTTAATGGGCCATATAAATATGATT
Found at i:84041072 original size:28 final size:28
Alignment explanation
Indices: 84040991--84041076 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
84040981 GTGAGCATGA
** *
84040991 ATATGAATGTGACAGGGCTTAATAGGCC
1 ATATGAATGTGATTGGGCTTAATGGGCC
* *
84041019 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCTTAATGGGCC
*
84041048 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCTTAATGGGCC
84041076 A
1 A
84041077 GATACAGGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 27 0.55
29 22 0.45
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCTTAATGGGCC
Found at i:84050712 original size:40 final size:40
Alignment explanation
Indices: 84050653--84050799 Score: 132
Period size: 40 Copynumber: 3.7 Consensus size: 40
84050643 CAATTGAATG
* * * *
84050653 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * * *
84050693 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* ** * ****
84050733 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
84050773 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
84050800 CGTGCACGTG
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:84050800 original size:40 final size:40
Alignment explanation
Indices: 84050694--84050820 Score: 159
Period size: 40 Copynumber: 3.2 Consensus size: 40
84050684 CTGGAAATTA
* * *
84050694 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTAGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTAG-TTC
*
84050735 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTC
* * *
84050774 TATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTC
84050814 TATCCGG
1 TATCCGG
84050821 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
39 5 0.06
40 72 0.94
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTC
Found at i:84058821 original size:40 final size:39
Alignment explanation
Indices: 84058694--84058823 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
84058684 ATGCTGGAAA
* *
84058694 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
84058734 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
84058774 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
84058814 TTATATCCGG
1 TTATATCCGG
84058824 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:84061574 original size:23 final size:22
Alignment explanation
Indices: 84061475--84061574 Score: 80
Period size: 22 Copynumber: 4.5 Consensus size: 22
84061465 GAGTCATGGT
*
84061475 CAGTAAGCTCC-TTCGAGCTGAA
1 CAGTAAGCTCCAAT-GAGCTGAA
84061497 CAGTAAGCT-CAATTGAGCT-AA
1 CAGTAAGCTCCAA-TGAGCTGAA
* * * *
84061518 AACGATAGGCTCTATTGAGCTGAA
1 CA-G-TAAGCTCCAATGAGCTGAA
*
84061542 CGGTAAGCTCCAATGAGCTGAAA
1 CAGTAAGCTCCAATGAGCTG-AA
84061565 CAGTAAGCTC
1 CAGTAAGCTC
84061575 TTACGAGCTA
Statistics
Matches: 60, Mismatches: 11, Indels: 13
0.71 0.13 0.15
Matches are distributed among these distances:
21 4 0.07
22 29 0.48
23 24 0.40
24 3 0.05
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
CAGTAAGCTCCAATGAGCTGAA
Found at i:84061575 original size:45 final size:44
Alignment explanation
Indices: 84061475--84061597 Score: 124
Period size: 45 Copynumber: 2.7 Consensus size: 44
84061465 GAGTCATGGT
84061475 CAGTAAGCTCCTTCGAGCTGAACAGTAAGCTCAATTGAGCTAAAA
1 CAGTAAGCT-CTTCGAGCTGAACAGTAAGCTCAATTGAGCTAAAA
* * * *
84061520 C-GATAGGCTCTATTGAGCTGAACGGTAAGCTCCAA-TGAGCTGAAA
1 CAG-TAAGCTCT-TCGAGCTGAACAGTAAGCT-CAATTGAGCTAAAA
* *
84061565 CAGTAAGCTCTTACGAGCTAAATCAGTAGGCTC
1 CAGTAAGCTCTT-CGAGCTGAA-CAGTAAGCTC
84061598 GTACGAGCTG
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
44 4 0.06
45 48 0.76
46 11 0.17
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.23
Consensus pattern (44 bp):
CAGTAAGCTCTTCGAGCTGAACAGTAAGCTCAATTGAGCTAAAA
Found at i:84061582 original size:23 final size:23
Alignment explanation
Indices: 84061475--84061607 Score: 75
Period size: 23 Copynumber: 5.9 Consensus size: 23
84061465 GAGTCATGGT
84061475 CAGTAAGCTCCTT-CGAGCTG-AA
1 CAGTAAGCT-CTTACGAGCTGAAA
*
84061497 CAGTAAGCTCAATT--GAGCTAAAA
1 CAGTAAGCTC--TTACGAGCTGAAA
* *
84061520 C-GATAGGCTC-TATTGAGCTG-AA
1 CAG-TAAGCTCTTA-CGAGCTGAAA
* ** *
84061542 CGGTAAGCTCCAATGAGCTGAAA
1 CAGTAAGCTCTTACGAGCTGAAA
84061565 CAGTAAGCTCTTACGAGCT-AAA
1 CAGTAAGCTCTTACGAGCTGAAA
* *
84061587 TCAGTAGGCTCGTACGAGCTG
1 -CAGTAAGCTCTTACGAGCTG
84061608 TGGTGAGTCC
Statistics
Matches: 88, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
20 1 0.01
21 1 0.01
22 34 0.39
23 52 0.59
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.23
Consensus pattern (23 bp):
CAGTAAGCTCTTACGAGCTGAAA
Found at i:84070554 original size:20 final size:20
Alignment explanation
Indices: 84070529--84070582 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
84070519 CACAGGAGCT
*
84070529 ACACGCTCGTGTGGTTTAGG
1 ACACGCCCGTGTGGTTTAGG
84070549 ACACGCCCGTGTGGTTTAGG
1 ACACGCCCGTGTGGTTTAGG
84070569 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
84070583 GCAGGCCGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.15, C:0.26, G:0.35, T:0.24
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTAGG
Found at i:84071136 original size:52 final size:52
Alignment explanation
Indices: 84071058--84071161 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
84071048 AACATGGCCA
*
84071058 AATCATGTCATTTCATTATGCACACTCAACACATTTACAACACCATAACTTG
1 AATCATGTCATTTCATTATCCACACTCAACACATTTACAACACCATAACTTG
*
84071110 AATCATGTCATTTTATTATCCACACTCAACACATTTACAACACCATAACTTG
1 AATCATGTCATTTCATTATCCACACTCAACACATTTACAACACCATAACTTG
84071162 TCAAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.37, C:0.27, G:0.05, T:0.32
Consensus pattern (52 bp):
AATCATGTCATTTCATTATCCACACTCAACACATTTACAACACCATAACTTG
Found at i:84075716 original size:9 final size:9
Alignment explanation
Indices: 84075702--84075726 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
84075692 AGTTAGAGAC
84075702 TAAATTGAA
1 TAAATTGAA
84075711 TAAATTGAA
1 TAAATTGAA
84075720 TAAATTG
1 TAAATTG
84075727 TAAAACTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (9 bp):
TAAATTGAA
Found at i:84076902 original size:46 final size:46
Alignment explanation
Indices: 84076835--84077010 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
84076825 TATTTGGGCA
*
84076835 TCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
84076881 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
84076926 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
84076974 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
84077011 GCGAGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84076990 original size:93 final size:93
Alignment explanation
Indices: 84076831--84077003 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
84076821 GGGATATTTG
* *
84076831 GGCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
84076896 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
84076924 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
*
84076989 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
84077004 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:84078998 original size:43 final size:42
Alignment explanation
Indices: 84078947--84079084 Score: 133
Period size: 44 Copynumber: 3.2 Consensus size: 42
84078937 TCCCAAACGT
* *
84078947 GGTCTTACATGTAATCAAATATCGATGGC-ACTATCCCAGACAG
1 GGTCTTACATGAAATCAAATA-CGATGCCAAC-ATCCCAGACAG
84078990 GGTCTTACATGAAATCAAATACGATGCCAACATCCCAGAC-G
1 GGTCTTACATGAAATCAAATACGATGCCAACATCCCAGACAG
* *
84079031 TGGCCTTACACAT-AAATCATAAGT-CGATGCCAACGTCCCAGAC-G
1 -GGTCTT--ACATGAAATCA-AA-TACGATGCCAACATCCCAGACAG
84079075 TGGTCTTACA
1 -GGTCTTACA
84079085 CGATAACACA
Statistics
Matches: 84, Mismatches: 5, Indels: 13
0.82 0.05 0.13
Matches are distributed among these distances:
41 1 0.01
42 23 0.27
43 28 0.33
44 31 0.37
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (42 bp):
GGTCTTACATGAAATCAAATACGATGCCAACATCCCAGACAG
Found at i:84087173 original size:27 final size:26
Alignment explanation
Indices: 84087129--84087180 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
84087119 AGACTACCGA
*
84087129 TTTACCCCTGGAGGGTAAAATGACTAT
1 TTTACCCCTGGAGCGT-AAATGACTAT
* *
84087156 TTTACCCCTTGTGCGTAAATGACTA
1 TTTACCCCTGGAGCGTAAATGACTA
84087181 ACTTGTGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
TTTACCCCTGGAGCGTAAATGACTAT
Found at i:84089562 original size:15 final size:15
Alignment explanation
Indices: 84089523--84089602 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
84089513 GTATCTTGGG
*
84089523 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
84089538 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
84089553 TTTCTTTATTTTGGG
1 TTTCTTTATTCTGGA
* *
84089568 TTTCTCTA-TCTTAGA
1 TTTCTTTATTC-TGGA
*
84089583 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
84089597 TTTCTT
1 TTTCTT
84089603 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
14 8 0.16
15 41 0.80
16 2 0.04
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:84089589 original size:45 final size:44
Alignment explanation
Indices: 84089518--84089602 Score: 116
Period size: 45 Copynumber: 1.9 Consensus size: 44
84089508 GTATCGTATC
* *
84089518 TTGGGTTTCTTTATCCTGGATCTCTTTATTCTGGATTTCTTTATT
1 TTGGGTTTCTCTATCCTAGATCTCTTTATTC-GGATTTCTTTATT
* * *
84089563 TTGGGTTTCTCTATCTTAGATTTCTTTATTCGGTTTTCTT
1 TTGGGTTTCTCTATCCTAGATCTCTTTATTCGGATTTCTT
84089603 GTTATCTTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 8 0.23
45 27 0.77
ACGTcount: A:0.11, C:0.15, G:0.15, T:0.59
Consensus pattern (44 bp):
TTGGGTTTCTCTATCCTAGATCTCTTTATTCGGATTTCTTTATT
Done.