Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 27 of 433
Found at i:7040078 original size:24 final size:24
Alignment explanation
Indices: 7040047--7040103 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
7040037 TTTGTTTTAA
7040047 ATTA-ATTA-ATACAATAATACCGG
1 ATTATATTATATAC-ATAATACCGG
* *
7040070 ATTATATTATTTTCATAATACCGG
1 ATTATATTATATACATAATACCGG
7040094 ATTATATTAT
1 ATTATATTAT
7040104 TTTCATACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 4 0.13
24 24 0.80
25 2 0.07
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (24 bp):
ATTATATTATATACATAATACCGG
Found at i:7040117 original size:29 final size:24
Alignment explanation
Indices: 7040060--7040110 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
7040050 AATTAATACA
7040060 ATAATACCGGATTATATTATTTTC
1 ATAATACCGGATTATATTATTTTC
7040084 ATAATACCGGATTATATTATTTTC
1 ATAATACCGGATTATATTATTTTC
7040108 ATA
1 ATA
7040111 CTTTAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (24 bp):
ATAATACCGGATTATATTATTTTC
Found at i:7046929 original size:28 final size:30
Alignment explanation
Indices: 7046881--7046958 Score: 81
Period size: 30 Copynumber: 2.6 Consensus size: 30
7046871 CAAATAAAAT
* * *
7046881 ATATAGTAATATAAATCATATAA-TAAAT-A
1 ATATAATAATATATAT-ATATAACAAAATCA
*
7046910 ATATAA-ACATATATATATATAACAAAATCT
1 ATATAATA-ATATATATATATAACAAAATCA
7046940 ATATAATAATATATATATA
1 ATATAATAATATATATATA
7046959 AGAAAGATAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
28 7 0.17
29 16 0.39
30 17 0.41
31 1 0.02
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.36
Consensus pattern (30 bp):
ATATAATAATATATATATATAACAAAATCA
Found at i:7047075 original size:26 final size:27
Alignment explanation
Indices: 7047011--7047075 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 27
7047001 ATGTGGTAAG
*
7047011 AATACATAA-ATAAAAATATAATGAAAT
1 AATA-ATAATATAAAAATATAATAAAAT
*
7047038 -ATGAT-ATAATAAAAATAT-ATAAAAT
1 AATAATAAT-ATAAAAATATAATAAAAT
7047063 AATAATAATATAA
1 AATAATAATATAA
7047076 TAAGTACTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
24 1 0.03
25 8 0.26
26 20 0.65
27 2 0.06
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (27 bp):
AATAATAATATAAAAATATAATAAAAT
Found at i:7047195 original size:25 final size:25
Alignment explanation
Indices: 7047154--7047207 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
7047144 TATATAACAG
7047154 AATAGATATAAAAATAA-AAAAATAT
1 AATAGATATAAAAATAATAAAAA-AT
*
7047179 AATA-ATATAATAGATAATAAAAAAT
1 AATAGATATAA-AAATAATAAAAAAT
7047204 AATA
1 AATA
7047208 TTTACTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 6 0.23
25 15 0.58
26 5 0.19
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (25 bp):
AATAGATATAAAAATAATAAAAAAT
Found at i:7048972 original size:206 final size:206
Alignment explanation
Indices: 7048611--7049166 Score: 821
Period size: 206 Copynumber: 2.7 Consensus size: 206
7048601 AAATCTGCTT
*
7048611 CTTCGATTTGTTCTCTGACAATACAGAGATGTCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
7048676 GCGAAAACCAAATCAGCTACGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* ** *
7048741 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGC-CTTCCGTCGAATAT
131 GGATCTGCTTCAGTATAATCATCTGAAGGGCAGATCTACTATGTGTCTGCTC-TCCGTCGAATAT
7048805 GGAGACT-CCAAA
195 GGAGA-TGCCAAA
* *
7048817 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * * *
7048882 ATGAAAGCTAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAATGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
7048947 GGATCTGCTTCAGTAT-ATACATCTGAAGGGCAGATTTACTATGTGTCTGCTCTCCGTCGAATAT
131 GGATCTGCTTCAGTATAAT-CATCTGAAGGGCAGATCTACTATGTGTCTGCTCTCCGTCGAATAT
*
7049011 GGAGATGCTAAA
195 GGAGATGCCAAA
* **
7049023 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATTGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
** * *
7049088 GTGAAAGCCAAATCATATATGTCTTCGATTTGTTCATTGTAAGCATAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
7049153 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
7049167 CCAGATCTGC
Statistics
Matches: 312, Mismatches: 34, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
205 3 0.01
206 300 0.96
207 9 0.03
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGTATAATCATCTGAAGGGCAGATCTACTATGTGTCTGCTCTCCGTCGAATATG
GAGATGCCAAA
Found at i:7061205 original size:21 final size:20
Alignment explanation
Indices: 7061171--7061220 Score: 73
Period size: 21 Copynumber: 2.5 Consensus size: 20
7061161 ATCAGCTCAC
7061171 TTGAGCTCAATTTAGCTCGT
1 TTGAGCTCAATTTAGCTCGT
*
7061191 TTGAGTTCGAATTTAGCTCGT
1 TTGAGCTC-AATTTAGCTCGT
*
7061212 TTCAGCTCA
1 TTGAGCTCA
7061221 TTCCTACTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (20 bp):
TTGAGCTCAATTTAGCTCGT
Found at i:7063623 original size:21 final size:21
Alignment explanation
Indices: 7063576--7063625 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7063566 AATCAATTGA
* *
7063576 GAGAAAAAAAAAAGAATGAAT
1 GAGAAAAAAAAAAGAATAAAG
*
7063597 GTGAAAAAAGAAAAGAA-AAAG
1 GAGAAAAAA-AAAAGAATAAAG
7063618 GAGAAAAA
1 GAGAAAAA
7063626 GAATGCAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (21 bp):
GAGAAAAAAAAAAGAATAAAG
Found at i:7068537 original size:14 final size:14
Alignment explanation
Indices: 7068527--7068573 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
7068517 TATAATAATA
7068527 ATATAAAAATATAT
1 ATATAAAAATATAT
*
7068541 ATATAATAAA-ATCT
1 ATATAA-AAATATAT
*
7068555 ATATAATAATATAT
1 ATATAAAAATATAT
7068569 ATATA
1 ATATA
7068574 TATATAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 2 0.07
14 23 0.82
15 3 0.11
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (14 bp):
ATATAAAAATATAT
Found at i:7068549 original size:28 final size:28
Alignment explanation
Indices: 7068518--7068573 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
7068508 TATAAACCAT
7068518 ATAATAAT-AATATAAAAATATATATATA
1 ATAA-AATCAATATAAAAATATATATATA
* *
7068546 ATAAAATCTATATAATAATATATATATA
1 ATAAAATCAATATAAAAATATATATATA
7068574 TATATAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (28 bp):
ATAAAATCAATATAAAAATATATATATA
Found at i:7074693 original size:2 final size:2
Alignment explanation
Indices: 7074686--7074731 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
7074676 ATTTGCAGCA
*
7074686 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7074728 AT AT
1 AT AT
7074732 TATTGGCATA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7075478 original size:15 final size:16
Alignment explanation
Indices: 7075452--7075481 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7075442 TTTTATTTTC
7075452 ATAATAAATTTTAAAA
1 ATAATAAATTTTAAAA
7075468 ATAAT-AATTTTAAA
1 ATAATAAATTTTAAA
7075482 TAACATTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAATAAATTTTAAAA
Found at i:7075539 original size:15 final size:15
Alignment explanation
Indices: 7075519--7075576 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
7075509 ATTCAATATT
7075519 AATATTTTAATAATA
1 AATATTTTAATAATA
*
7075534 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
7075553 AATATATTAATAATA
1 AATATTTTAATAATA
*
7075568 AATGTTTTA
1 AATATTTTA
7075577 TAGTATAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:7076029 original size:14 final size:14
Alignment explanation
Indices: 7076007--7076036 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7075997 TCAAAAAAGT
7076007 AAATCATTTTTCAG
1 AAATCATTTTTCAG
*
7076021 AAATTATTTTTCAG
1 AAATCATTTTTCAG
7076035 AA
1 AA
7076037 GCCATTTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (14 bp):
AAATCATTTTTCAG
Found at i:7082373 original size:28 final size:30
Alignment explanation
Indices: 7082309--7082373 Score: 73
Period size: 28 Copynumber: 2.2 Consensus size: 30
7082299 ATTTTCTAAC
*
7082309 ATAAATTCAATACTTATAAATTTTAACAGT
1 ATAAATTCAATACTTATAAATTTTAACACT
* *
7082339 AAAAATTCAATA-TT-TAATTTTTCAACACT
1 ATAAATTCAATACTTATAAATTTT-AACACT
7082368 -TAAATT
1 ATAAATT
7082374 TATACTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 12 0.40
29 7 0.23
30 11 0.37
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.42
Consensus pattern (30 bp):
ATAAATTCAATACTTATAAATTTTAACACT
Found at i:7083083 original size:6 final size:6
Alignment explanation
Indices: 7083072--7083105 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7083062 TATGATGTTT
*
7083072 AATTCA AATTCA AATTCA AATTCA AATTAA AATT
1 AATTCA AATTCA AATTCA AATTCA AATTCA AATT
7083106 TGTATCAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (6 bp):
AATTCA
Found at i:7083476 original size:18 final size:21
Alignment explanation
Indices: 7083432--7083477 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
7083422 TATTTTATAA
7083432 TAATTAATAATATATATAAAC
1 TAATTAATAATATATATAAAC
* *
7083453 TCATTAATAA-ATA-AT-GAC
1 TAATTAATAATATATATAAAC
7083471 TAATTAA
1 TAATTAA
7083478 AATTTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 8 0.36
19 2 0.09
20 3 0.14
21 9 0.41
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (21 bp):
TAATTAATAATATATATAAAC
Found at i:7083616 original size:22 final size:23
Alignment explanation
Indices: 7083576--7083621 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
7083566 AAAAAAATTA
7083576 TCATATTTGTATAATT-AAATAT
1 TCATATTTGTATAATTAAAATAT
*
7083598 TCATATTT-TATACTATAAAATAT
1 TCATATTTGTATAAT-TAAAATAT
7083621 T
1 T
7083622 TATAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 5 0.24
22 9 0.43
23 7 0.33
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (23 bp):
TCATATTTGTATAATTAAAATAT
Found at i:7083637 original size:23 final size:26
Alignment explanation
Indices: 7083602--7083668 Score: 63
Period size: 25 Copynumber: 2.7 Consensus size: 26
7083592 AAATATTCAT
7083602 ATTTTATACTATAAAATAT-TTA-TA-A
1 ATTTTA-A-TATAAAATATATTATTAGA
* *
7083627 ATTTTAATAT-ATATTTATTATTAGA
1 ATTTTAATATAAAATATATTATTAGA
7083652 ATTTTAATAT-AAATATA
1 ATTTTAATATAAAATATA
7083669 AATATAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
22 4 0.11
23 6 0.17
24 3 0.09
25 22 0.63
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (26 bp):
ATTTTAATATAAAATATATTATTAGA
Found at i:7084428 original size:21 final size:24
Alignment explanation
Indices: 7084402--7084463 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 24
7084392 AGTATTAACA
7084402 ATTAAATTTAAAAATA-AA-TA-G
1 ATTAAATTTAAAAATACAAGTAGG
7084423 ATTAAATTTTTAAAAATACAAGTAGG
1 ATTAAA--TTTAAAAATACAAGTAGG
7084449 ATTTTAAATTTAAAA
1 A--TTAAATTTAAAA
7084464 TGCACAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
21 6 0.18
23 10 0.29
24 2 0.06
25 2 0.06
26 9 0.26
28 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (24 bp):
ATTAAATTTAAAAATACAAGTAGG
Found at i:7086163 original size:7 final size:7
Alignment explanation
Indices: 7086153--7086187 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
7086143 TTACCGTTTC
7086153 TCCATTT
1 TCCATTT
7086160 TCCATTT
1 TCCATTT
7086167 TCCATTT
1 TCCATTT
7086174 TCCATTT
1 TCCATTT
7086181 TCCATTT
1 TCCATTT
7086188 AAGCAGTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57
Consensus pattern (7 bp):
TCCATTT
Found at i:7087961 original size:35 final size:36
Alignment explanation
Indices: 7087898--7087968 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 36
7087888 ATTTGAATAA
*
7087898 ATAATCCAATTTTACTATAAAAACTTAAATT-AAAC
1 ATAATCCAATTTTACAATAAAAACTTAAATTCAAAC
* ** *
7087933 ATAATCCATTTTTACAATGGAAAGTTAAATTCAAAC
1 ATAATCCAATTTTACAATAAAAACTTAAATTCAAAC
7087969 TTATATAAGC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 26 0.87
36 4 0.13
ACGTcount: A:0.48, C:0.14, G:0.04, T:0.34
Consensus pattern (36 bp):
ATAATCCAATTTTACAATAAAAACTTAAATTCAAAC
Found at i:7088942 original size:96 final size:99
Alignment explanation
Indices: 7088824--7089059 Score: 275
Period size: 96 Copynumber: 2.4 Consensus size: 99
7088814 AATTTAAGGG
* ** *
7088824 TTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGTGTTTGTTAATTAAATTAATTACT-AA-TT
1 TTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA-TAAATTT
*
7088887 TT-AAAAAATTAGATTATGATTTAGTGTTTATGAT
65 TTAAAAAAATTAGATTAAGATTTAGTGTTTATGAT
* *
7088921 TTTTAAGG-AAAAAATTAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTT
1 TTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTT
* *
7088985 TAAAAAAATTAGATTAAGATTTTAG-GATTTTAGGGT
66 TAAAAAAATTAGATTAAGA-TTTAGTG--TTTATGAT
* * * * *
7089021 ATTTAAGAAAAAAAATCAAATAAATTAGGGTTTGGGGTT
1 TTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGGGTT
7089060 TAGGATAACT
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
95 1 0.01
96 44 0.37
97 12 0.10
98 17 0.14
99 5 0.04
100 12 0.10
101 28 0.24
ACGTcount: A:0.43, C:0.01, G:0.16, T:0.40
Consensus pattern (99 bp):
TTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTT
TAAAAAAATTAGATTAAGATTTAGTGTTTATGAT
Found at i:7090298 original size:116 final size:116
Alignment explanation
Indices: 7090037--7090535 Score: 858
Period size: 116 Copynumber: 4.3 Consensus size: 116
7090027 TTTATATTTT
* * *
7090037 ATTACATGAAATAATATAAAAATATTCAAAATATTACTTTATTTAAAATAATTT-TCATTTTATT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCT-ATTTTATT
* * *
7090101 AAAAATATAAAAGT-AATTATAATTACTTTATTTAAAACAACCTTTTATATT
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
7090152 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
7090217 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
7090268 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
* *
7090333 CAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
7090384 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATT-
7090449 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
7090501 ATTATATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
7090536 TGTACAAATA
Statistics
Matches: 366, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
115 72 0.20
116 211 0.58
117 83 0.23
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:7090946 original size:18 final size:18
Alignment explanation
Indices: 7090920--7090962 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
7090910 GACTAGAAAA
* *
7090920 AGGAAACATATAAGGGCT
1 AGGATACATAAAAGGGCT
7090938 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
7090956 AGGATAC
1 AGGATAC
7090963 GTACCTGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:7091589 original size:7 final size:7
Alignment explanation
Indices: 7091579--7091611 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
7091569 GTTAAATAAA
7091579 AAATACT
1 AAATACT
7091586 AAATACT
1 AAATACT
7091593 AAATACT
1 AAATACT
7091600 AAATACT
1 AAATACT
7091607 AAATA
1 AAATA
7091612 TGAATCCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (7 bp):
AAATACT
Found at i:7091590 original size:14 final size:14
Alignment explanation
Indices: 7091571--7091604 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7091561 AAATATTAGT
7091571 TAAATAAAAAATAC
1 TAAATAAAAAATAC
**
7091585 TAAATACTAAATAC
1 TAAATAAAAAATAC
7091599 TAAATA
1 TAAATA
7091605 CTAAATATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAAAAAATAC
Found at i:7091596 original size:21 final size:21
Alignment explanation
Indices: 7091571--7091611 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7091561 AAATATTAGT
7091571 TAAATAAAAAATACTAAATAC
1 TAAATAAAAAATACTAAATAC
**
7091592 TAAATACTAAATACTAAATA
1 TAAATAAAAAATACTAAATA
7091612 TGAATCCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (21 bp):
TAAATAAAAAATACTAAATAC
Found at i:7092799 original size:20 final size:20
Alignment explanation
Indices: 7092776--7092816 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7092766 TTTGAGGGGA
7092776 ATTTAAGAGAAATTTGAGAG
1 ATTTAAGAGAAATTTGAGAG
* *
7092796 ATTTGAGAGGAATTTGAGAG
1 ATTTAAGAGAAATTTGAGAG
7092816 A
1 A
7092817 ATATTGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (20 bp):
ATTTAAGAGAAATTTGAGAG
Found at i:7092823 original size:11 final size:10
Alignment explanation
Indices: 7092774--7092823 Score: 57
Period size: 11 Copynumber: 4.8 Consensus size: 10
7092764 GTTTTGAGGG
*
7092774 GAATTTAAGA
1 GAATTTGAGA
7092784 GAAATTTGAGA
1 G-AATTTGAGA
7092795 G-ATTTGAGA
1 GAATTTGAGA
7092804 GGAATTTGAGA
1 -GAATTTGAGA
7092815 GAATATTGA
1 GAAT-TTGA
7092824 AAGATTGAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
9 8 0.23
10 6 0.17
11 21 0.60
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.30
Consensus pattern (10 bp):
GAATTTGAGA
Found at i:7092829 original size:31 final size:31
Alignment explanation
Indices: 7092766--7092829 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
7092756 TAACGAGAGT
* *
7092766 TTTGAGGGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGGAATTTAAGAGAAATTTGAAAGA
*
7092797 TTTGAGAGGAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGGAATTTAAGAGAAAT-TTGAAAGA
7092828 TT
1 TT
7092830 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.31
Consensus pattern (31 bp):
TTTGAGAGGAATTTAAGAGAAATTTGAAAGA
Found at i:7098319 original size:13 final size:13
Alignment explanation
Indices: 7098301--7098326 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7098291 AGTGTGGGGT
7098301 AATTTCACAAAAA
1 AATTTCACAAAAA
7098314 AATTTCACAAAAA
1 AATTTCACAAAAA
7098327 TTACTAGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (13 bp):
AATTTCACAAAAA
Found at i:7098604 original size:20 final size:18
Alignment explanation
Indices: 7098557--7098605 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
7098547 CCAGATAAAC
7098557 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
7098574 ATTAAGA-TAATCATTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
7098594 ATTAAATTAATA
1 ATTAAATTAATA
7098606 AAATGCTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:7098665 original size:25 final size:25
Alignment explanation
Indices: 7098589--7098666 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
7098579 GATAATCATT
* * **
7098589 TTAATATTAAATTAATAAAATGCTA
1 TTAATATTAAACTATTAAAATAATA
* *
7098614 TTAATA-T-AAGTATTAAATTAA-A
1 TTAATATTAAACTATTAAAATAATA
7098636 TTTAATATTAAACTATTAAAATAATA
1 -TTAATATTAAACTATTAAAATAATA
7098662 TTAAT
1 TTAAT
7098667 TTTGGAATAG
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
22 1 0.02
23 15 0.36
24 2 0.05
25 23 0.55
26 1 0.02
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (25 bp):
TTAATATTAAACTATTAAAATAATA
Found at i:7103824 original size:53 final size:53
Alignment explanation
Indices: 7103743--7103898 Score: 199
Period size: 53 Copynumber: 3.0 Consensus size: 53
7103733 TCACATATCA
* * * * *
7103743 TACCGATGCCATATCTCAGATATGGTCTTATACAGAATCACATTATCATATTG
1 TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCATATTG
* * *
7103796 TACTGATGCTATAGCCCAGCTATAGTCTTATACGGAATCACATTATCACATTG
1 TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCATATTG
* *
7103849 TACCGATGCCATAGCCCAGCTATCGTATTATACGGAAGT-ACA-TATCATAT
1 TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAA-TCACATTATCATAT
7103899 CTTTTTCGTC
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
52 7 0.08
53 81 0.91
54 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (53 bp):
TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCATATTG
Found at i:7108804 original size:26 final size:26
Alignment explanation
Indices: 7108774--7108825 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7108764 CTCCAGCCGT
7108774 CGGAGTCCGGGACTCCGCCTCAGCAG
1 CGGAGTCCGGGACTCCGCCTCAGCAG
7108800 CGGAGTCCGGGACTCCGCCTCAGCAG
1 CGGAGTCCGGGACTCCGCCTCAGCAG
7108826 TGGGAGTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.38, G:0.35, T:0.12
Consensus pattern (26 bp):
CGGAGTCCGGGACTCCGCCTCAGCAG
Found at i:7113170 original size:2 final size:2
Alignment explanation
Indices: 7113163--7113192 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7113153 TTGAAGATTA
7113163 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7113193 CAACCAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7114203 original size:19 final size:20
Alignment explanation
Indices: 7114181--7114218 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7114171 AAGTTCAAGG
7114181 ATCAA-ATTTAAAAAAAATT
1 ATCAAGATTTAAAAAAAATT
* *
7114200 ATCAAGTTTTAAAACAAAT
1 ATCAAGATTTAAAAAAAAT
7114219 ATAAATAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.32
Consensus pattern (20 bp):
ATCAAGATTTAAAAAAAATT
Found at i:7115206 original size:23 final size:23
Alignment explanation
Indices: 7115180--7115225 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
7115170 TTAAAGAGTA
7115180 AATTAGTCTTT-TGTTAAAAATTT
1 AATTA-TCTTTATGTTAAAAATTT
*
7115203 AATTATTTTTACTGTTAAAAATT
1 AATTATCTTTA-TGTTAAAAATT
7115226 GGTCCATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 5 0.25
24 11 0.55
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (23 bp):
AATTATCTTTATGTTAAAAATTT
Found at i:7117074 original size:7 final size:7
Alignment explanation
Indices: 7117062--7117102 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
7117052 TTTATTTAAC
7117062 AAAAAAT
1 AAAAAAT
7117069 AAAAAAT
1 AAAAAAT
7117076 AAAAAAT
1 AAAAAAT
*
7117083 AAAAAGGT
1 AAAAA-AT
7117091 AAAAAA-
1 AAAAAAT
7117097 AAAAAA
1 AAAAAA
7117103 GTTCAGGCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
6 6 0.19
7 19 0.61
8 6 0.19
ACGTcount: A:0.85, C:0.00, G:0.05, T:0.10
Consensus pattern (7 bp):
AAAAAAT
Found at i:7117747 original size:17 final size:18
Alignment explanation
Indices: 7117722--7117755 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7117712 ATACAATTCC
7117722 CAAAATAATAG-AAATTA
1 CAAAATAATAGTAAATTA
*
7117739 CAAATTAATAGTAAATT
1 CAAAATAATAGTAAATT
7117756 TAAAATACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (18 bp):
CAAAATAATAGTAAATTA
Found at i:7118299 original size:96 final size:96
Alignment explanation
Indices: 7118135--7118637 Score: 512
Period size: 96 Copynumber: 5.3 Consensus size: 96
7118125 CACCACTTTA
* * ** * * * * *
7118135 TGGATGAATCACTGATTGTTGCAGATGAACCACTAACGATAAAAATATTGGTGTATGAACTA-TC
1 TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
*
7118199 TATCGGTGCAGATAAAAGCTGCTAGTACATTG
66 -ATCGGTGCAGATAAAAGCTGCTAGTACGTTG
* *
7118231 TGGATGAACCACTGGTTATTGCAGATGAACTGCTAATGATAAGAATATTGGTGGATGAACCA-TC
1 TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* * *
7118295 TATCGATGCAGATAAAAGCTGCTAATATGTTG
66 -ATCGGTGCAGATAAAAGCTGCTAGTACGTTG
* * * * * *
7118327 TGGATGAACCATTGATCATTGCAAATGAACTATTAATGCTAAGAATA-TGGTGGATGAACTATTC
1 TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* * *
7118391 ATCAGTGTAGATAAAAGCTGCTAGTATGTTG
66 ATCGGTGCAGATAAAAGCTGCTAGTACGTTG
* * * **
7118422 TGGATGAACCAATGGCCATTGCAGATAAACTACTAATGATAAGAATATTGGCAGATGAACCATTC
1 TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* * **
7118487 CTCGGTGCAGATAAAAGATATTAGTACGTTG
66 ATCGGTGCAGATAAAAGCTGCTAGTACGTTG
* * * * * * *
7118518 TGGATAAATCACTAGTCA-TGCAGATAAACTACTAACGATAAGAATATAGGTGGATAAACCATTC
1 TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* * * ** *
7118582 GTCGGTACAGATAAAAGATATTAGTACGTTC
66 ATCGGTGCAGATAAAAGCTGCTAGTACGTTG
* * *
7118613 TGGATAAATCACTAGTCA-TGCAGAT
1 TGGATGAACCACTGGTCATTGCAGAT
7118638 AAATTGCTGA
Statistics
Matches: 350, Mismatches: 55, Indels: 5
0.85 0.13 0.01
Matches are distributed among these distances:
95 174 0.50
96 176 0.50
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (96 bp):
TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
ATCGGTGCAGATAAAAGCTGCTAGTACGTTG
Found at i:7118572 original size:191 final size:192
Alignment explanation
Indices: 7118153--7118598 Score: 508
Period size: 191 Copynumber: 2.3 Consensus size: 192
7118143 TCACTGATTG
* * * *
7118153 TTGCAGATGAACCACTAACGATAAAAATATTGGTGTATGAACTA-TCTATCGGTGCAGATAAAAG
1 TTGCAGATGAACTACTAACGATAAGAATA-TGGTGGATGAACTATTCTATCAGTGCAGATAAAAG
* ** * *
7118217 CTGCTAGTACATTGTGGATGAACCACTGGTTATTGCAGATGAACTGCTAATGATAAGAATATTGG
65 CTGCTAGTACATTGTGGATGAACCAATGGCCATTGCAGATAAACTACTAATGATAAGAATATTGG
** * * * * *
7118282 TGGATGAACCATCTATCGATGCAGATAAAAGCTGCTAATATGTTGTGGATGAACCATTGATCA
130 CAGATGAACCATCTATCGATGCAGATAAAAGATACTAATACGTTGTGGATAAACCATAGATCA
* * * * *
7118345 TTGCAAATGAACTATTAATGCTAAGAATATGGTGGATGAACTATTC-ATCAGTGTAGATAAAAGC
1 TTGCAGATGAACTACTAACGATAAGAATATGGTGGATGAACTATTCTATCAGTGCAGATAAAAGC
**
7118409 TGCTAGTATGTTGTGGATGAACCAATGGCCATTGCAGATAAACTACTAATGATAAGAATATTGGC
66 TGCTAGTACATTGTGGATGAACCAATGGCCATTGCAGATAAACTACTAATGATAAGAATATTGGC
* * * * *
7118474 AGATGAACCAT-TCCTCGGTGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAG-TCA
131 AGATGAACCATCT-ATCGATGCAGATAAAAGATACTAATACGTTGTGGATAAACCA-TAGATCA
* * * * * *
7118536 -TGCAGATAAACTACTAACGATAAGAATATAGGTGGATAAACCATTC-GTCGGTACAGATAAAAG
1 TTGCAGATGAACTACTAACGATAAGAATAT-GGTGGATGAACTATTCTATCAGTGCAGATAAAAG
7118599 ATATTAGTAC
Statistics
Matches: 211, Mismatches: 39, Indels: 9
0.81 0.15 0.03
Matches are distributed among these distances:
190 25 0.12
191 159 0.75
192 27 0.13
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (192 bp):
TTGCAGATGAACTACTAACGATAAGAATATGGTGGATGAACTATTCTATCAGTGCAGATAAAAGC
TGCTAGTACATTGTGGATGAACCAATGGCCATTGCAGATAAACTACTAATGATAAGAATATTGGC
AGATGAACCATCTATCGATGCAGATAAAAGATACTAATACGTTGTGGATAAACCATAGATCA
Found at i:7118618 original size:95 final size:95
Alignment explanation
Indices: 7118441--7118640 Score: 328
Period size: 95 Copynumber: 2.1 Consensus size: 95
7118431 CAATGGCCAT
* * * *
7118441 TGCAGATAAACTACTAATGATAAGAATATTGGCAGATGAACCATTCCTCGGTGCAGATAAAAGAT
1 TGCAGATAAACTACTAACGATAAGAATATAGGCAGATAAACCATTCCTCGGTACAGATAAAAGAT
*
7118506 ATTAGTACGTTGTGGATAAATCACTAGTCA
66 ATTAGTACGTTCTGGATAAATCACTAGTCA
** *
7118536 TGCAGATAAACTACTAACGATAAGAATATAGGTGGATAAACCATTCGTCGGTACAGATAAAAGAT
1 TGCAGATAAACTACTAACGATAAGAATATAGGCAGATAAACCATTCCTCGGTACAGATAAAAGAT
7118601 ATTAGTACGTTCTGGATAAATCACTAGTCA
66 ATTAGTACGTTCTGGATAAATCACTAGTCA
7118631 TGCAGATAAA
1 TGCAGATAAA
7118641 TTGCTGACTA
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 97 1.00
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.27
Consensus pattern (95 bp):
TGCAGATAAACTACTAACGATAAGAATATAGGCAGATAAACCATTCCTCGGTACAGATAAAAGAT
ATTAGTACGTTCTGGATAAATCACTAGTCA
Found at i:7118640 original size:44 final size:44
Alignment explanation
Indices: 7118492--7118640 Score: 122
Period size: 50 Copynumber: 3.2 Consensus size: 44
7118482 CATTCCTCGG
7118492 TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
1 TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
* * * * * * *
7118536 TGCAGAT-AAA-CTACTAACGATAAGAATATAGGTGGATAAACCATTCGTCGG
1 TGCAGATAAAAGATA-TTA-G-TACG--T-T--GTGGATAAATCACTAGTC-A
* *
7118587 TACAGATAAAAGATATTAGTACGTTCTGGATAAATCACTAGTCA
1 TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
7118631 TGCAGATAAA
1 TGCAGATAAA
7118641 TTGCTGACTA
Statistics
Matches: 77, Mismatches: 17, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
42 2 0.03
43 5 0.06
44 17 0.22
45 17 0.22
47 2 0.03
48 2 0.03
50 18 0.23
51 7 0.09
52 5 0.06
53 2 0.03
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.27
Consensus pattern (44 bp):
TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
Found at i:7131629 original size:66 final size:66
Alignment explanation
Indices: 7131501--7131634 Score: 234
Period size: 66 Copynumber: 2.0 Consensus size: 66
7131491 GCGTTACAAA
* *
7131501 TATATAGCTAATATCTTTTTTGTTGATTTTTTTTACTTTATTTGTTCTTTTCTTTCTACTCTTTT
1 TATATAGCTAATATCGTTTTTATTGATTTTTTTTACTTTATTTGTTCTTTTCTTTCTACTCTTTT
7131566 T
66 T
7131567 TATATAGCTAATATCGTTTTTATTGATTTTTTTTTACTTTATTTGTTCTTTTCTTTCT-CTCTTT
1 TATATAGCTAATATCGTTTTTATTGA-TTTTTTTTACTTTATTTGTTCTTTTCTTTCTACTCTTT
7131631 TT
65 TT
7131633 TA
1 TA
7131635 ACTCTTTAGT
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
66 34 0.52
67 31 0.48
ACGTcount: A:0.16, C:0.12, G:0.06, T:0.66
Consensus pattern (66 bp):
TATATAGCTAATATCGTTTTTATTGATTTTTTTTACTTTATTTGTTCTTTTCTTTCTACTCTTTT
T
Found at i:7133030 original size:18 final size:18
Alignment explanation
Indices: 7133007--7133074 Score: 77
Period size: 18 Copynumber: 3.8 Consensus size: 18
7132997 ACAACGTGTC
*
7133007 ATTCATTTTCAAAACATT
1 ATTCATTTTCAAAACGTT
*
7133025 ATTCATTATCACAAA-GTT
1 ATTCATTTTCA-AAACGTT
7133043 ATTC-TCTTTCAAAACGTT
1 ATTCAT-TTTCAAAACGTT
*
7133061 ATTAATTTTCAAAA
1 ATTCATTTTCAAAA
7133075 TGTCACTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 4 0.10
18 34 0.81
19 4 0.10
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTCATTTTCAAAACGTT
Found at i:7139572 original size:20 final size:20
Alignment explanation
Indices: 7139547--7139597 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
7139537 AAATATTAAC
7139547 TTTTCTAGAAAAGTAAATTA
1 TTTTCTAGAAAAGTAAATTA
7139567 TTTTCTAGAAAAGTAAATTA
1 TTTTCTAGAAAAGTAAATTA
7139587 TTTTCTAGAAA
1 TTTTCTAGAAA
7139598 TTATTTTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (20 bp):
TTTTCTAGAAAAGTAAATTA
Found at i:7139600 original size:14 final size:14
Alignment explanation
Indices: 7139581--7139619 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
7139571 CTAGAAAAGT
7139581 AAATTA-TTTTCTAG
1 AAATTATTTTTC-AG
7139595 AAATTATTTTTCAG
1 AAATTATTTTTCAG
*
7139609 AAATCATTTTT
1 AAATTATTTTT
7139620 TTTTGTCAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (14 bp):
AAATTATTTTTCAG
Found at i:7141941 original size:262 final size:264
Alignment explanation
Indices: 7141476--7141999 Score: 1007
Period size: 262 Copynumber: 2.0 Consensus size: 264
7141466 TGCACTCCAA
7141476 GTACTCTAGTGAATTCCTTTCGCAGATTTACTGTTTGACCACCAAAATTTATTCATAATACGATG
1 GTACTCTAGTGAATTCCTTTCGCAGATTTACTGTTTGACCACCAAAATTTATTCATAATACGATG
7141541 ACATTATTCTTTTGGCAATGCAAAACATTGCATAACATAAACCAATATTGCTTATAAAACTGCCT
66 ACATTATTCTTTTGGCAATGCAAAACATTGCATAACATAAACCAATATTGCTTATAAAACTGCCT
*
7141606 TTATAAAAACCTCTTTACCACCCATTGAAAGGTACCTAAAGCTCCACCTCTTTATACGCCGTCGA
131 TTATAAAAACCTCTTTACCACCCATTGAAAGGTACCTAAAGCTCCACCTCTCTATACGCCGTCGA
*
7141671 AACCTGTCAACAAAATTTGCAAATGCC-TTTTTTTT-TACCCAATTATCATGGGTAAACCCGAAT
196 AACCTGTCAACAAAATTTGCAAATGCCTTTTTTTTTCTACCCAATTATCATGGGTAAACCCAAAT
7141734 ACAG
261 ACAG
7141738 GTACTCTAGTGAATTCCTTTCGCAGATTTACTGTTTGACCACCAAAATTTATTCATAATACGATG
1 GTACTCTAGTGAATTCCTTTCGCAGATTTACTGTTTGACCACCAAAATTTATTCATAATACGATG
*
7141803 ACATTATTCTTTTGGCAATGCAAAACGTTGCATAACATAAACCAATATTGCTTATAAAACTGCCT
66 ACATTATTCTTTTGGCAATGCAAAACATTGCATAACATAAACCAATATTGCTTATAAAACTGCCT
7141868 TTATAAAAACCTCTTTACCACCCATTGAAAGGTACCTAAAGCTCCACCTCTCTATACGCCGTCGA
131 TTATAAAAACCTCTTTACCACCCATTGAAAGGTACCTAAAGCTCCACCTCTCTATACGCCGTCGA
7141933 AACCTGTCAACAAAATTTGCAAATGCCTTTTTTTTTCTACCCAATTATCATGGGTAAACCCAAAT
196 AACCTGTCAACAAAATTTGCAAATGCCTTTTTTTTTCTACCCAATTATCATGGGTAAACCCAAAT
7141998 AC
261 AC
7142000 TTTTCAGGGT
Statistics
Matches: 257, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
262 220 0.86
263 8 0.03
264 29 0.11
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (264 bp):
GTACTCTAGTGAATTCCTTTCGCAGATTTACTGTTTGACCACCAAAATTTATTCATAATACGATG
ACATTATTCTTTTGGCAATGCAAAACATTGCATAACATAAACCAATATTGCTTATAAAACTGCCT
TTATAAAAACCTCTTTACCACCCATTGAAAGGTACCTAAAGCTCCACCTCTCTATACGCCGTCGA
AACCTGTCAACAAAATTTGCAAATGCCTTTTTTTTTCTACCCAATTATCATGGGTAAACCCAAAT
ACAG
Found at i:7144919 original size:20 final size:21
Alignment explanation
Indices: 7144874--7144919 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
7144864 ATAAAAGTTA
7144874 TAAAAATTATTAAATTTTAG-
1 TAAAAATTATTAAATTTTAGT
* *
7144894 TAAAAAATATTTAATTTTTA-T
1 TAAAAATTA-TTAAATTTTAGT
7144915 TAAAA
1 TAAAA
7144920 TTAGAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TAAAAATTATTAAATTTTAGT
Found at i:7144919 original size:21 final size:20
Alignment explanation
Indices: 7144874--7144911 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7144864 ATAAAAGTTA
*
7144874 TAAAAATTATTAAATTTTAG
1 TAAAAAATATTAAATTTTAG
*
7144894 TAAAAAATATTTAATTTT
1 TAAAAAATATTAAATTTT
7144912 TATTAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAAAAAATATTAAATTTTAG
Found at i:7144964 original size:36 final size:38
Alignment explanation
Indices: 7144896--7144974 Score: 110
Period size: 36 Copynumber: 2.1 Consensus size: 38
7144886 AATTTTAGTA
*
7144896 AAAAATATTTAATTTTTATTAAAATTAGAAAAAAATTAT
1 AAAAATAATTAATTTTTA-TAAAATTAGAAAAAAATTAT
7144935 AAAAATAATTAA-TTTTA-AAAATT-GTAAAAAAATTAT
1 AAAAATAATTAATTTTTATAAAATTAG-AAAAAAATTAT
7144971 AAAA
1 AAAA
7144975 TATATAGAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
35 1 0.03
36 21 0.55
38 5 0.13
39 11 0.29
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (38 bp):
AAAAATAATTAATTTTTATAAAATTAGAAAAAAATTAT
Found at i:7144967 original size:11 final size:11
Alignment explanation
Indices: 7144916--7144974 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
7144906 AATTTTTATT
*
7144916 AAAATTAGAAA
1 AAAATTATAAA
7144927 AAAATTATAAA
1 AAAATTATAAA
**
7144938 AATAATTAATTTTA
1 AA-AATT-A-TAAA
*
7144952 AAAATTGTAAA
1 AAAATTATAAA
7144963 AAAATTATAAA
1 AAAATTATAAA
7144974 A
1 A
7144975 TATATAGAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
11 25 0.66
12 4 0.11
13 5 0.13
14 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (11 bp):
AAAATTATAAA
Found at i:7144973 original size:20 final size:20
Alignment explanation
Indices: 7144945--7145074 Score: 56
Period size: 20 Copynumber: 6.7 Consensus size: 20
7144935 AAAAATAATT
*
7144945 AATTTTAAAAATTGTAAAAA
1 AATTATAAAAATTGTAAAAA
* * *
7144965 AATTAT-AAAA-TATATAGA
1 AATTATAAAAATTGTAAAAA
* *
7144983 AA-TATAGAAAAATGT-ATAA
1 AATTATA-AAAATTGTAAAAA
* * ** *
7145002 AATTTTATAAAGTCATAAGAA
1 AATTATA-AAAATTGTAAAAA
* *
7145023 AATTATAAAAAATGTAAAGA
1 AATTATAAAAATTGTAAAAA
*
7145043 AA-TAT-AAAATTCGTAAAAG
1 AATTATAAAAATT-GTAAAAA
*
7145062 AATTATTAAAATT
1 AATTATAAAAATT
7145075 ATCATACCAA
Statistics
Matches: 77, Mismatches: 25, Indels: 15
0.66 0.21 0.13
Matches are distributed among these distances:
17 3 0.04
18 12 0.16
19 21 0.27
20 26 0.34
21 15 0.19
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.32
Consensus pattern (20 bp):
AATTATAAAAATTGTAAAAA
Found at i:7147656 original size:15 final size:15
Alignment explanation
Indices: 7147626--7147654 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7147616 ACTATTAGTA
7147626 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
7147641 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
7147655 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:7151303 original size:4 final size:4
Alignment explanation
Indices: 7151296--7151323 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
7151286 ATTTATTCAT
7151296 TTAA TTAA TTAA TTAA TTAA TTAA TTAA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA
7151324 AGGTATGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TTAA
Found at i:7154600 original size:33 final size:32
Alignment explanation
Indices: 7154555--7154627 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 32
7154545 CTCAAAGGAT
*
7154555 TCAATTGGAAACTTATCTTTCTATCCATTATA
1 TCAATCGGAAACTTATCTTTCTATCCATTATA
7154587 TCAATCGGCAAACTTATCTTTCTATCCATTATA
1 TCAATCGG-AAACTTATCTTTCTATCCATTATA
7154620 TCAATCGG
1 TCAATCGG
7154628 TTTATTTGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
32 7 0.18
33 32 0.82
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (32 bp):
TCAATCGGAAACTTATCTTTCTATCCATTATA
Found at i:7154987 original size:19 final size:19
Alignment explanation
Indices: 7154954--7155006 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
7154944 TTTTTGGAAA
7154954 AAATATTTTTC-AATGGGT
1 AAATATTTTTCAAATGGGT
7154972 AAATATTTTTCAAATGGGT
1 AAATATTTTTCAAATGGGT
7154991 AAATATTTTTCAAATG
1 AAATATTTTTCAAATG
7155007 ATCTGAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 11 0.32
19 23 0.68
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (19 bp):
AAATATTTTTCAAATGGGT
Found at i:7157211 original size:20 final size:20
Alignment explanation
Indices: 7157186--7157235 Score: 57
Period size: 23 Copynumber: 2.4 Consensus size: 20
7157176 TTATTATGAG
7157186 TATTATTTT-TAATTATATA
1 TATTATTTTATAATTATATA
*
7157205 CTATTATTATTACTTATTATATA
1 -TATTATT-TTA-TAATTATATA
7157228 TATTATTT
1 TATTATTT
7157236 CCTTAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 7 0.27
21 3 0.12
22 7 0.27
23 9 0.35
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTATTTTATAATTATATA
Found at i:7162438 original size:25 final size:25
Alignment explanation
Indices: 7162410--7162460 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
7162400 AAGCCCTTTA
*
7162410 TTACTCATATGATTTGAAGCACTAC
1 TTACTCATATGATTGGAAGCACTAC
7162435 TTACTCATATGATTGGAAGCACTAC
1 TTACTCATATGATTGGAAGCACTAC
7162460 T
1 T
7162461 AAAAGTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (25 bp):
TTACTCATATGATTGGAAGCACTAC
Found at i:7169626 original size:118 final size:119
Alignment explanation
Indices: 7169478--7169909 Score: 663
Period size: 118 Copynumber: 3.6 Consensus size: 119
7169468 CAAATAGACT
7169478 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATA-CAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
7169542 GACGTTCTCAAAGGCAGCAGATCTAGACTTCAGATGTTTATATTGAAGCAGATC
66 GACGTTCTCAAAGGCAGCAGATCTAGACTTCAGATGTTTATATTGAAGCAGATC
7169596 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA-GACATAGCAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
7169660 GACGTTCTCAAAGGCAGCAGATCTAGACTTCAGATGTTTATATTGAAGCAGATC
66 GACGTTCTCAAAGGCAGCAGATCTAGACTTCAGATGTTTATATTGAAGCAGATC
* *
7169714 CAAGATGATTTGGCATCCTTGTGCTCACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
*** ** *
7169779 GACGTTCTCAAATATAGCAGATCTA-ACCTTCAGATGTTTATGCTGAAACAGATC
66 GACGTTCTCAAAGGCAGCAGATCTAGA-CTTCAGATGTTTATATTGAAGCAGATC
* * * * * * * * *
7169833 CAAGATAATTTGGTATTCTTGTGTTTATAAGAAACAAATCGAGGACGTTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
* *
7169898 AATGTTCTCAAA
66 GACGTTCTCAAA
7169910 TAGACTCAAG
Statistics
Matches: 290, Mismatches: 21, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
117 6 0.02
118 153 0.53
119 131 0.45
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (119 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
GACGTTCTCAAAGGCAGCAGATCTAGACTTCAGATGTTTATATTGAAGCAGATC
Found at i:7169952 original size:83 final size:83
Alignment explanation
Indices: 7169833--7170008 Score: 253
Period size: 83 Copynumber: 2.1 Consensus size: 83
7169823 GAAACAGATC
* * * * * * *
7169833 CAAGATAATTTGGTATTCTTGTGTTTATAAGAAACAAATCGAGGACGTTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAGAACATTGCAGATATGACTCTCA
* *
7169898 AATGTTCTCAAATAGACT
66 AATGTTCTCAAACAAACT
*
7169916 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGAACATTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAGAACATTGCAGATATGACTCTCA
*
7169981 AATGTTCTCAAACAAATT
66 AATGTTCTCAAACAAACT
7169999 CAAGATGATT
1 CAAGATGATT
7170009 CGCTACAGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAGAACATTGCAGATATGACTCTCA
AATGTTCTCAAACAAACT
Found at i:7176166 original size:30 final size:30
Alignment explanation
Indices: 7176100--7176169 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
7176090 TACGATATTT
* * *
7176100 AATATATATACGTAATATGTATAATAAAGAT
1 AATA-ATATACATAATATATATAATAAAGAC
*
7176131 AATAATATACATAATATATATAA-AAATAC
1 AATAATATACATAATATATATAATAAAGAC
7176160 ACATAATATA
1 A-ATAATATA
7176170 TACGTATGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.15
30 25 0.74
31 4 0.12
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (30 bp):
AATAATATACATAATATATATAATAAAGAC
Found at i:7176168 original size:21 final size:21
Alignment explanation
Indices: 7176120--7176171 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
7176110 CGTAATATGT
* * * *
7176120 ATAATAAAGATAATAATATAC
1 ATAATATATATAAAAATACAC
7176141 ATAATATATATAAAAATACAC
1 ATAATATATATAAAAATACAC
7176162 ATAATATATA
1 ATAATATATA
7176172 CGTATGTAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.31
Consensus pattern (21 bp):
ATAATATATATAAAAATACAC
Found at i:7176407 original size:18 final size:18
Alignment explanation
Indices: 7176365--7176399 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7176355 CACTATTATA
*
7176365 ATAACAATAATAATAAAT
1 ATAAAAATAATAATAAAT
*
7176383 ATAAAAATAATATTAAA
1 ATAAAAATAATAATAAA
7176400 ATACAAAAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (18 bp):
ATAAAAATAATAATAAAT
Found at i:7176481 original size:14 final size:14
Alignment explanation
Indices: 7176452--7176499 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
7176442 AAAATAAGCC
*
7176452 TATATGTAAA-ATA
1 TATATATAAACATA
*
7176465 TATATATATACATA
1 TATATATAAACATA
7176479 TATACTA-AAACATA
1 TATA-TATAAACATA
7176493 TATATAT
1 TATATAT
7176500 GATAATGATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 10 0.34
14 17 0.59
15 2 0.07
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (14 bp):
TATATATAAACATA
Found at i:7177124 original size:14 final size:14
Alignment explanation
Indices: 7177088--7177125 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
7177078 TTTTTTTTAC
7177088 GTTTTTATATATAT
1 GTTTTTATATATAT
*
7177102 GTATTTATATATAT
1 GTTTTTATATATAT
7177116 -TTTTGTATAT
1 GTTTT-TATAT
7177126 TCGTTTAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 3 0.14
14 18 0.86
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (14 bp):
GTTTTTATATATAT
Found at i:7178364 original size:14 final size:14
Alignment explanation
Indices: 7178345--7178374 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7178335 AGTATAAATT
7178345 AAACAGAATTTGAA
1 AAACAGAATTTGAA
7178359 AAACAGAATTTGAA
1 AAACAGAATTTGAA
7178373 AA
1 AA
7178375 TACCTCGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (14 bp):
AAACAGAATTTGAA
Found at i:7178570 original size:73 final size:71
Alignment explanation
Indices: 7178484--7178750 Score: 298
Period size: 73 Copynumber: 3.7 Consensus size: 71
7178474 GTAAACCAAT
7178484 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAA-ATAGAATTTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AACATA-AA-TTGAAAATACCTCAGCG
7178548 TGCCCCGAG
63 TGCCCCGAG
7178557 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAACATAAATTGAAAATACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTGAAACATAAATTGAAAATACCTCAGCGT
*
7178622 GCCCTGAG
64 GCCCCGAG
** * **
7178630 GCTTGACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATT-AAAA-A---CAGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAA-CATAAATTGAAAATACCTCAG-CG
****
7178690 T--TAAAAG
63 TGCCCCGAG
7178697 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAACATAAATTGAAAA
7178751 CAGAATTTGA
Statistics
Matches: 173, Mismatches: 13, Indels: 21
0.84 0.06 0.10
Matches are distributed among these distances:
67 43 0.25
68 11 0.06
69 1 0.01
71 4 0.02
72 10 0.06
73 90 0.52
74 7 0.04
75 7 0.04
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (71 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAAATACCTCAGCGTGC
CCCGAG
Found at i:7178802 original size:88 final size:88
Alignment explanation
Indices: 7178695--7179001 Score: 406
Period size: 88 Copynumber: 3.5 Consensus size: 88
7178685 AGAAATTAAA
* *
7178695 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAACAGAATTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAACAGAAATTG
*
7178760 AAAATACCTCGGCATGTGA-CCTG
66 AAAATACCTCAGC-TGTGACCCTG
* *
7178783 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTGGAAAAATAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATT-G-AAAACAGAAAT
7178848 TGAAAATACCTCAGC-GT-ACCCTG
64 TGAAAATACCTCAGCTGTGACCCTG
* * ** *
7178871 AGGCTCAACTCACCTCTCGCAATATAAATTGATTTTTGAAAAATATAAACTACAAAACAAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAA-TTGAAAACAGAAATT
* * *
7178936 GAAAATACCTCAGCGTGCGAGCC-A
65 GAAAATACCTCAGC-TGTGACCCTG
* *
7178960 AGGCTCAACTCACCTCTCGCAATATGAGTTGAGTTTGGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
7179002 GCAAAAAATA
Statistics
Matches: 193, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
87 25 0.13
88 101 0.52
89 41 0.21
90 26 0.13
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (88 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAACAGAAATTG
AAAATACCTCAGCTGTGACCCTG
Found at i:7178852 original size:14 final size:14
Alignment explanation
Indices: 7178818--7178853 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7178808 GAGTTGATTT
7178818 TTGAAAAATAAAAA
1 TTGAAAAATAAAAA
*
7178832 TTGGAAAAATAGAAA
1 TT-GAAAAATAAAAA
7178847 TTGAAAA
1 TTGAAAA
7178854 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.22
Consensus pattern (14 bp):
TTGAAAAATAAAAA
Found at i:7192228 original size:48 final size:48
Alignment explanation
Indices: 7192172--7192918 Score: 1219
Period size: 48 Copynumber: 15.8 Consensus size: 48
7192162 TGAAAATATA
7192172 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
* * *
7192220 TGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTG-AA-ATATGTAG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGT-G
7192267 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
*
7192315 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
* *
7192363 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA--TA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
7192409 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA--TG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
7192455 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGT-
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
7192502 -GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
* *
7192549 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
* *
7192597 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
* * *
7192645 AGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
7192693 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
*
7192741 TG--ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
* *
7192787 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
* * * *
7192835 AGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
*
7192883 AGATA-GAATATGTGGTAAAGCCGAATGGCTAATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
7192919 TGTTGTAACA
Statistics
Matches: 664, Mismatches: 26, Indels: 19
0.94 0.04 0.03
Matches are distributed among these distances:
46 187 0.28
47 65 0.10
48 406 0.61
49 6 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
Found at i:7192688 original size:142 final size:142
Alignment explanation
Indices: 7192159--7192918 Score: 1225
Period size: 142 Copynumber: 5.4 Consensus size: 142
7192149 TGTGAAATAT
7192159 ATGTGAAA-ATATA--AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
* *
7192221 GATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTAGAGATATGTATATGTGGTAA
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT-GAGATATGTATATGTGGTAA
7192286 AGCCGAATGGCTA
130 AGCCGAATGGCTA
* *
7192299 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
* *
7192364 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAAGATATGTATATGTGGTAAA
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTGAGATATGTATATGTGGTAAA
7192429 GCCGAATGGCTA
131 GCCGAATGGCTA
7192441 ATGTG-AA-ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA--TGT
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
*
7192502 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTGAGATATGTATATGTGGTA
7192567 AAGCCGAATGGCTA
129 AAGCCGAATGGCTA
* * *
7192581 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
*
7192646 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTA
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG--TGAGATATGTATATGTGGTA
7192711 AAGCCGAATGGCTA
129 AAGCCGAATGGCTA
* *
7192725 ATGTGAAATATATGTGTG--ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
* *
7192788 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTCGTA
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTGAGATATGTATATGTGGTA
*
7192853 AAGCCGAATGGCGA
129 AAGCCGAATGGCTA
* *
7192867 ATGTGAAATATGTATGAGATA-GAATATGTGGTAAAGCCGAATGGCTAATGTG
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
7192919 TGTTGTAACA
Statistics
Matches: 577, Mismatches: 28, Indels: 27
0.91 0.04 0.04
Matches are distributed among these distances:
138 39 0.07
139 2 0.00
140 98 0.17
141 8 0.01
142 216 0.37
143 123 0.21
144 91 0.16
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (142 bp):
ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTGAGATATGTATATGTGGTAAA
GCCGAATGGCTA
Found at i:7193002 original size:37 final size:37
Alignment explanation
Indices: 7192952--7193085 Score: 268
Period size: 37 Copynumber: 3.6 Consensus size: 37
7192942 ACATGAAACT
7192952 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
7192989 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
7193026 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
7193063 TGGAGATTATGTCCGGGTAAGAC
1 TGGAGATTATGTCCGGGTAAGAC
7193086 TTCGTAATAA
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:7194303 original size:40 final size:40
Alignment explanation
Indices: 7194259--7194489 Score: 410
Period size: 40 Copynumber: 5.8 Consensus size: 40
7194249 GAGAATTGAG
7194259 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
7194299 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
7194339 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
7194379 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
7194419 AGTGATGTATCCGGACTAAG-TCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
7194458 AGTGATATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
7194490 ATCATGCTGG
Statistics
Matches: 185, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 35 0.19
40 150 0.81
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:7198135 original size:48 final size:48
Alignment explanation
Indices: 7197960--7198627 Score: 1036
Period size: 48 Copynumber: 14.0 Consensus size: 48
7197950 AGATAAATAT
* * * *
7197960 ATATATGTGTGATATGTATATATGGTAAAGCCGAATGGCGAATG-GAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
7198007 ATATATGTGTGATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
7198055 ATATATAT-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
7198102 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
7198150 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
7198198 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
7198246 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
7198294 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
7198342 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
7198390 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
7198438 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
7198486 ATATATGTGTGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
7198534 ATATATATGAGATATGTATATGT-GTAAATCTGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
7198581 ATATGTATGAGATAAGAATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
7198628 GTGTTGTAAC
Statistics
Matches: 571, Mismatches: 47, Indels: 5
0.92 0.08 0.01
Matches are distributed among these distances:
47 126 0.22
48 445 0.78
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:7198257 original size:144 final size:144
Alignment explanation
Indices: 7197960--7198627 Score: 1144
Period size: 144 Copynumber: 4.7 Consensus size: 144
7197950 AGATAAATAT
* * * *
7197960 ATATATGTGTGATATGTATATATGGTAAAGCCGAATGGCGAATG-GAAATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
* * *
7198024 GTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-AGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
7198088 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
7198102 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
7198167 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
7198232 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
*
7198246 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
7198311 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
7198376 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
* * *
7198390 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
* *
7198455 ATATGTGGTAAAGCCGAATGGATAATGTGAAATATATGTGTGACATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
7198520 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
* * * * * *
7198534 ATATATATGAGATATGTATATGT-GTAAATCTGAATGGCGAATGTGAAATATGTATGAGATAAGA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
7198598 ATATGTGGTAAAGCCGAATGGCTAATGTGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGA
7198628 GTGTTGTAAC
Statistics
Matches: 505, Mismatches: 19, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
142 43 0.09
143 120 0.24
144 342 0.68
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (144 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAA
Found at i:7198712 original size:37 final size:37
Alignment explanation
Indices: 7198662--7198758 Score: 194
Period size: 37 Copynumber: 2.6 Consensus size: 37
7198652 ACATGAAACT
7198662 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
7198699 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
7198736 TGGAGATTATGTCCGGGTAAGAC
1 TGGAGATTATGTCCGGGTAAGAC
7198759 TTCGTAATAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:7201083 original size:21 final size:21
Alignment explanation
Indices: 7201059--7201176 Score: 61
Period size: 21 Copynumber: 5.5 Consensus size: 21
7201049 AATAATAACA
7201059 ATACTAATATTATATAAAGAT
1 ATACTAATATTATATAAAGAT
* *
7201080 ATACTTATTTATATATTAAAGAT
1 ATACTAATAT-TATA-TAAAGAT
7201103 ATA-TACATA-TATAATAAACGAAT
1 ATACTA-ATATTAT-ATAAA-G-AT
* *
7201126 AATAC-AATATT-TA-ATATAT
1 -ATACTAATATTATATAAAGAT
7201145 ATACGTAATATGTATAATAAAGAT
1 ATAC-TAATAT-TAT-ATAAAGAT
7201169 A-AC-AATAT
1 ATACTAATAT
7201177 ACATAATATA
Statistics
Matches: 74, Mismatches: 8, Indels: 30
0.66 0.07 0.27
Matches are distributed among these distances:
18 4 0.05
19 2 0.03
20 5 0.07
21 23 0.31
22 9 0.12
23 21 0.28
24 10 0.14
ACGTcount: A:0.52, C:0.06, G:0.05, T:0.37
Consensus pattern (21 bp):
ATACTAATATTATATAAAGAT
Found at i:7201115 original size:23 final size:22
Alignment explanation
Indices: 7201059--7201120 Score: 58
Period size: 23 Copynumber: 2.9 Consensus size: 22
7201049 AATAATAACA
*
7201059 ATACTAATAT-TATATAAAGAT
1 ATACTCATATATATATAAAGAT
* *
7201080 ATACTTATTTATATATTAAAGAT
1 ATACTCATATATATA-TAAAGAT
7201103 ATA-TACATATATA-ATAAA
1 ATACT-CATATATATATAAA
7201121 CGAATAATAC
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 12 0.35
22 6 0.18
23 16 0.47
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (22 bp):
ATACTCATATATATATAAAGAT
Found at i:7201200 original size:20 final size:21
Alignment explanation
Indices: 7201158--7201208 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
7201148 CGTAATATGT
* * *
7201158 ATAATAAAGATAACAATATAC
1 ATAATATATATAACAATACAC
7201179 ATAATATATATAA-AATACAC
1 ATAATATATATAACAATACAC
7201199 ATAATATATA
1 ATAATATATA
7201209 CGTATGTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.61, C:0.08, G:0.02, T:0.29
Consensus pattern (21 bp):
ATAATATATATAACAATACAC
Found at i:7201424 original size:17 final size:18
Alignment explanation
Indices: 7201397--7201438 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
7201387 CACTATTATA
7201397 ATAACAATAATAAT-AAAT
1 ATAA-AATAATAATAAAAT
*
7201415 ATAAAATAATATTAAAAT
1 ATAAAATAATAATAAAAT
7201433 ATAAAA
1 ATAAAA
7201439 ACAAATACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (18 bp):
ATAAAATAATAATAAAAT
Found at i:7201518 original size:26 final size:27
Alignment explanation
Indices: 7201483--7201536 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
7201473 AAAATAAGCC
*
7201483 TATACGTAAAATATATATATATACATA
1 TATACGTAAAACATATATATATACATA
*
7201510 TATAC-TAAAACATATATATATATATA
1 TATACGTAAAACATATATATATACATA
7201536 T
1 T
7201537 GATAATGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (27 bp):
TATACGTAAAACATATATATATACATA
Found at i:7201552 original size:3 final size:3
Alignment explanation
Indices: 7201538--7201591 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
7201528 TATATATATG
* * * *
7201538 ATA ATG ATA ATA ATA ATG ATA ATA ATA GTA ATA ATA CTA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
7201585 AAA ATA A
1 ATA ATA A
7201592 CAAGAATATT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7204585 original size:17 final size:17
Alignment explanation
Indices: 7204546--7204584 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
7204536 AATATGAATA
7204546 ATAAAATAATAATAATG
1 ATAAAATAATAATAATG
7204563 ATAAAATAA-AA-AATG
1 ATAAAATAATAATAATG
7204578 CATAAAA
1 -ATAAAA
7204585 AGAGGAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.19
16 8 0.38
17 9 0.43
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (17 bp):
ATAAAATAATAATAATG
Found at i:7215061 original size:25 final size:25
Alignment explanation
Indices: 7215009--7215061 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
7214999 TACTAAATTA
* **
7215009 TTTTATATGTCATCTATTTTAAGTT
1 TTTTATATATCATCTATTTTAAACT
* *
7215034 TTTTATATATTATTTATTTTAAACT
1 TTTTATATATCATCTATTTTAAACT
7215059 TTT
1 TTT
7215062 ACACATGTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (25 bp):
TTTTATATATCATCTATTTTAAACT
Found at i:7215130 original size:50 final size:45
Alignment explanation
Indices: 7215076--7215214 Score: 102
Period size: 49 Copynumber: 2.9 Consensus size: 45
7215066 ATGTTATCTA
7215076 TTTTATATTTTATTTAGTAAACGGTTTTATATGTTATTTATTTTAAAACT
1 TTTTATATTTTATTTAG-AAACGG-TTT-TA--TTATTTATTTTAAAACT
* * **
7215126 TTTTACATTGTATATTT-GAAACTGTTTTATTATTTATTTTAAGCCTT
1 TTTTATATT-T-TATTTAGAAACGGTTTTATTATTTATTTTAAAAC-T
**
7215173 TTATATATATTATTTATTTA-AAACTATTTTATTATTTATTTT
1 TT-T-TATA-T-TTTATTTAGAAACGGTTTTATTATTTATTTT
7215215 GAATCGTTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
46 14 0.19
47 3 0.04
48 3 0.04
49 32 0.43
50 15 0.20
51 3 0.04
52 5 0.07
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (45 bp):
TTTTATATTTTATTTAGAAACGGTTTTATTATTTATTTTAAAACT
Found at i:7215205 original size:22 final size:22
Alignment explanation
Indices: 7215109--7215213 Score: 68
Period size: 22 Copynumber: 4.5 Consensus size: 22
7215099 GTTTTATATG
7215109 TTATTTATTTTAAAACT-TTTTACA
1 TTATTTA-TTTAAAACTATTTT--A
* * * *
7215133 TTGTATATTTGAAACTGTTTTA
1 TTATTTATTTAAAACTATTTTA
** *
7215155 TTATTTATTTTAAGCCTTTTATATATA
1 TTATTTA-TTTAAAAC---TAT-TTTA
7215182 TTATTTATTTAAAACTATTTTA
1 TTATTTATTTAAAACTATTTTA
7215204 TTATTTATTT
1 TTATTTATTT
7215214 TGAATCGTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 14
0.70 0.15 0.16
Matches are distributed among these distances:
22 19 0.31
23 16 0.26
24 9 0.15
26 8 0.13
27 10 0.16
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATTTATTTAAAACTATTTTA
Found at i:7215242 original size:49 final size:49
Alignment explanation
Indices: 7215138--7215244 Score: 128
Period size: 49 Copynumber: 2.2 Consensus size: 49
7215128 TTACATTGTA
* * * *
7215138 TATTTGAAACTGTTTTATTATTTATTTTAAGCCTTTTATATATATTATT
1 TATTTAAAACTATTTTATTATTTATTTTAAGCCGTTTATATAGATTATT
* *
7215187 TATTTAAAACTATTTTATTATTTATTTTGAA-TCGTTT-TATAGGTTATT
1 TATTTAAAACTATTTTATTATTTATTTT-AAGCCGTTTATATAGATTATT
7215235 TATTTTAAAA
1 TA-TTTAAAA
7215245 TGTTATTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
48 11 0.22
49 37 0.74
50 2 0.04
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.58
Consensus pattern (49 bp):
TATTTAAAACTATTTTATTATTTATTTTAAGCCGTTTATATAGATTATT
Found at i:7215251 original size:17 final size:17
Alignment explanation
Indices: 7215229--7215265 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
7215219 CGTTTTATAG
7215229 GTTATTTATTTTAAAAT
1 GTTATTTATTTTAAAAT
*
7215246 GTTATTTATTTTAAATT
1 GTTATTTATTTTAAAAT
7215263 GTT
1 GTT
7215266 TTATATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (17 bp):
GTTATTTATTTTAAAAT
Found at i:7218441 original size:3 final size:3
Alignment explanation
Indices: 7218433--7218464 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7218423 AAACAAAACA
7218433 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7218465 CAACAACAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7227081 original size:68 final size:68
Alignment explanation
Indices: 7226971--7227105 Score: 234
Period size: 68 Copynumber: 2.0 Consensus size: 68
7226961 GACTACGAAA
* * *
7226971 GAGATCCTTGTAATTTTTAGAACTAATTCAGAGTAATGTTCAAAACACACTTATTACTCTATGCC
1 GAGATCCTTGTAATTTTTAGAACTAAGTCAGAATAATGTTCAAAACACACTTATTACTCTAAGCC
7227036 TGG
66 TGG
*
7227039 GAGATCCTTGTAATTTTTAGAACTAAGTCAGAATAATTTTCAAAACACACTTATTACTCTAAGCC
1 GAGATCCTTGTAATTTTTAGAACTAAGTCAGAATAATGTTCAAAACACACTTATTACTCTAAGCC
7227104 TG
66 TG
7227106 TGAGTAATAG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (68 bp):
GAGATCCTTGTAATTTTTAGAACTAAGTCAGAATAATGTTCAAAACACACTTATTACTCTAAGCC
TGG
Found at i:7230844 original size:45 final size:45
Alignment explanation
Indices: 7230641--7230855 Score: 152
Period size: 46 Copynumber: 4.6 Consensus size: 45
7230631 TGTGAGCTAG
** * * *
7230641 TGTAAGACATGTCTGGGACATGCATCAACCAC-ATCATGAAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCAAACAT--AAGTCAA
* * * * *
7230687 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC--GAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCAAACATAAGT-C-AA
* *
7230735 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAAACATAAGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTC-AAACATAAGTCAA
* * *
7230781 TGTAAGACATGTCTGGGACATGCATTGG-CT-ACAAGATATGTCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCA-AACATAAGTCAA
*
7230825 TGTAAGACCATGTCTGGGACATAGCGTCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
7230856 ACAAATATGC
Statistics
Matches: 134, Mismatches: 22, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
43 1 0.01
44 16 0.12
45 17 0.13
46 53 0.40
47 29 0.22
48 17 0.13
50 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTCAAACATAAGTCAA
Found at i:7234333 original size:44 final size:43
Alignment explanation
Indices: 7234249--7234388 Score: 163
Period size: 44 Copynumber: 3.2 Consensus size: 43
7234239 CACCATAGAG
* *
7234249 AATCTTATCTCCCTGAAGTTCCAGTGGAGCAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAG-TCCAGTGGAGCAAATTGAAGCTACA
* * **
7234293 AATCTTATCTTCCTAAAGTCACAGTAAAGCAAATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTC-CAGTGGAGCAAATTGAAGCTACA
* * * *
7234337 AATCTCATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAACGACA
1 AATCTTATCTCCCTGAAG-TCCAGTGGAGCAAATTGAAGCTACA
7234381 AATCTTAT
1 AATCTTAT
7234389 ACCTCTAAAG
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
43 2 0.03
44 76 0.96
45 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTCCAGTGGAGCAAATTGAAGCTACA
Found at i:7234745 original size:3 final size:3
Alignment explanation
Indices: 7234737--7234768 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7234727 AACAAAACAA
7234737 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7234769 CAAAATTCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7237843 original size:17 final size:17
Alignment explanation
Indices: 7237821--7237853 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7237811 GATATGATAC
7237821 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
7237838 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
7237854 AATCAGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:7237854 original size:18 final size:17
Alignment explanation
Indices: 7237821--7237854 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7237811 GATATGATAC
*
7237821 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
7237838 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
7237855 ATCAGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:7238154 original size:23 final size:22
Alignment explanation
Indices: 7238111--7238168 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7238101 AAAAGGTATC
* *
7238111 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
7238132 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
7238155 TGCAGATCATATCT
1 TACAAATCATATCT
7238169 AATATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:7238175 original size:19 final size:19
Alignment explanation
Indices: 7238147--7238237 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
7238137 AATCATATCT
*
7238147 TCTAAGATTGCAGATCATA
1 TCTAAGATTGCATATCATA
*
7238166 TCTAATATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
7238184 TCTAATATTG--TATCATA
1 TCTAAGATTGCATATCATA
7238201 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7238220 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
7238238 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 16 0.24
19 36 0.54
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7238199 original size:35 final size:36
Alignment explanation
Indices: 7238160--7238229 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 36
7238150 AAGATTGCAG
* *
7238160 ATCATATCTAATATTGCA-ATCATATCTAATATTGT
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGT
7238195 ATCATATCTAAGATTGCATATCATATCTAAGATTG
1 ATCATATCTAAGATTGCATATCATATCTAAGATTG
7238230 CATATCATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 17 0.53
36 15 0.47
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (36 bp):
ATCATATCTAAGATTGCATATCATATCTAAGATTGT
Found at i:7238642 original size:45 final size:45
Alignment explanation
Indices: 7238587--7238938 Score: 265
Period size: 45 Copynumber: 8.1 Consensus size: 45
7238577 GGAAGGCGAT
* * * *
7238587 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATGCAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
7238632 ATCTGTTATCTTCGATCTGCTCCCCGTTTAATACAGAAATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
7238677 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGTCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
7238721 ATCTGTTATCTCCGATTTGCTCTCCGTCTAATATAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * * *
7238766 ATTTGTCATTTTCGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* *
7238811 ATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCT-GT-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
7238858 A----TTATTTTCGATCTGCT-----TC-AGTGA-AG-G-T-CC-A
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAAT-ACAGAGATGCCAA
7238889 ATCTGTTATGGCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTAT--CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
7238936 ATC
1 ATC
7238939 ATCTTGGATC
Statistics
Matches: 234, Mismatches: 46, Indels: 52
0.70 0.14 0.16
Matches are distributed among these distances:
31 2 0.01
32 2 0.01
33 1 0.00
34 1 0.00
35 8 0.03
36 3 0.01
37 11 0.05
41 13 0.06
42 4 0.02
43 9 0.04
44 45 0.19
45 100 0.43
46 3 0.01
47 21 0.09
48 5 0.02
49 6 0.03
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:7238713 original size:89 final size:90
Alignment explanation
Indices: 7238587--7238767 Score: 256
Period size: 89 Copynumber: 2.0 Consensus size: 90
7238577 GGAAGGCGAT
** * *
7238587 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATGCAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
*
7238652 TCCCCGTTTAATACAGAAATGCCAA
66 TCCCCGTCTAATACAGAAATGCCAA
* * *
7238677 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
* * *
7238741 TCTCCGTCTAATATAGAGATGCCAA
66 TCCCCGTCTAATACAGAAATGCCAA
7238766 AT
1 AT
7238768 TTGTCATTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
89 73 0.91
90 7 0.09
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.33
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
TCCCCGTCTAATACAGAAATGCCAA
Found at i:7238915 original size:78 final size:78
Alignment explanation
Indices: 7238800--7239094 Score: 448
Period size: 78 Copynumber: 3.8 Consensus size: 78
7238790 ATGTAAACAC
* * *
7238800 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATTT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
7238865 TCGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
7238878 GTGAAGGTCCA-ATCTGTTATGGCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
7238942 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
7238956 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCCAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
7239021 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * **
7239034 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
7239095 TGTTTCTTCG
Statistics
Matches: 197, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 2 0.01
78 193 0.98
79 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:7239298 original size:78 final size:78
Alignment explanation
Indices: 7239169--7239442 Score: 451
Period size: 78 Copynumber: 3.5 Consensus size: 78
7239159 ATGTAAACAC
* * *
7239169 ATGAAGGTCAGATCTACTATGTCTTTGATCTGCTCCCCATTTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATCT
7239234 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
7239247 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTACTCCCCGTTTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATC
7239311 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
7239325 ATGAAGGTCAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATCT
7239390 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
7239403 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGT
7239443 CGAATATGAA
Statistics
Matches: 181, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 2 0.01
78 177 0.98
79 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:7239435 original size:369 final size:368
Alignment explanation
Indices: 7238684--7239661 Score: 1453
Period size: 369 Copynumber: 2.7 Consensus size: 368
7238674 CAAATCTGCT
* * * ** * * * * *
7238684 TCTTCAATCTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTTATCTCCGATTTGCTCTCCGTC
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTT-TCTTCGATTTGTTCTCTGAC
* * *
7238749 TAATATAGAGATGCCAAATTTGTCATTTTCGATCTGCTTCGATGTAAACACATGAAGGTCAGATC
65 -AGTACAGAGATGCCAAA-TTGTCATTTTAGATCTGCTTCGATGTAAACACATGAAGGTCAGATC
* * * * * *
7238814 TACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATTTTCGATCTGCTTCAG
128 TACTATGTCTTTGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAA
*
7238879 TGAAGGTCCAATCTGTTATGGCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
193 TGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
*
7238944 GGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCCAATACAGAGAT
258 GGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCCAATACAGAGAT
7239009 GCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
323 GCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
* *
7239055 TCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTTTGACA
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
*
7239120 GTACAGAGATGCCAAATCTGTCATTTTGGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTA
66 GTACAGAGATGCCAAAT-TGTCATTTTAGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTA
* *
7239185 CTATGTCTTTGATCTGCTCCCCATTTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATG
130 CTATGTCTTTGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATG
* *
7239250 AAGGTCCAATCTGTTATGTCTTCGATCTACTCCCCGTTTAATACAGAGATGCCAAATCATCTTGG
195 AAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
*
7239315 ATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGC
260 ATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCCAATACAGAGATGC
7239380 CAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
325 CAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
*
7239424 TCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
* *
7239489 GTACAGAGATGCCAAA---TCATCTTAGATCTG---C--T-T---CA-ATGAAGGTCAGATCTGC
66 GTACAGAGATGCCAAATTGTCATTTTAGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTAC
* * *
7239541 TGTGTCTTTGATCTACTCCCCATCTAATACAGAGATGCCAAATCATCTTAGATCTTCTTCAATGA
131 TATGTCTTTGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGA
* * * **
7239606 AGGT-CAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAAT
196 AGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
7239662 TTGTTTCTTC
Statistics
Matches: 560, Mismatches: 45, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
354 2 0.00
355 122 0.22
356 2 0.00
359 1 0.00
360 1 0.00
362 1 0.00
365 12 0.02
368 1 0.00
369 366 0.65
370 15 0.03
371 37 0.07
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (368 bp):
TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
GTACAGAGATGCCAAATTGTCATTTTAGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTAC
TATGTCTTTGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGA
AGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
TCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCCAATACAGAGATGCC
AAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
Found at i:7239507 original size:199 final size:203
Alignment explanation
Indices: 7239289--7240162 Score: 919
Period size: 220 Copynumber: 4.2 Consensus size: 203
7239279 CTCCCCGTTT
* * * * *
7239289 AATACAGAGATGCCAAATCATCTTGGATCTGCTTCA-A-TGAAGGTCAGATCTGCTGTGTCTTCA
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCACACTGAAAGCCAAATCTGCTATGTCTTCA
*
7239352 ATCTGCTCCCCGTCTAATAC-AGAGATGCCAAATCATCTTGGATCTGCTTC-A-AT-GAAGGTCA
66 ATCTGCTCCCCGTC-AATACAAG-GATGCCAAATCATCTTGGATCTACTTCAACATCGAAGGTCA
*
7239413 GATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTCTTCGATTT
129 GATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTT
7239478 GTTCTCTGAC
194 GTTCTCTGAC
* * * * * **
7239488 AGTACAGAGATGCCAAATCATCTTAGATCTGCTTCA-A-TGAAGGTCAGATCTGCTGTGTCTTTG
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCACACTGAAAGCCAAATCTGCTATGTCTTCA
* * * *
7239551 ATCTACTCCCCATCTAATAC-AGAGATGCCAAATCATCTTAGATCTTCTTC-A-AT-GAAGGTCA
66 ATCTGCTCCCCGTC-AATACAAG-GATGCCAAATCATCTTGGATCTACTTCAACATCGAAGGTCA
* *
7239612 GATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTCTTCTATTT
129 GATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTT
7239677 GTTCTCTGAC
194 GTTCTCTGAC
* * *
7239687 AGTACAGAGATGCCAAATCATCTTAGATCTTCTTCAGCGTAAACACGTGAAAGCCAAATCTGTTA
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTT---C----ACAC-TGAAAGCCAAATCTGCTA
** *
7239752 TGTCTTCAATCTGCTCCTTGTCAATGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAA
58 TGTCTTCAATCTGCTCCCCGTCAATACAAGGATGCCAAATCATCTTGGATCTACTTC-------A
* **
7239817 GACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCTTTCGAATATGGAGATGCCAAAT
116 -ACAT-CGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAAT
*
7239882 CTGTTTCTTTGATTTGTTCTCTGAC
179 CTGTTTCTTCGATTTGTTCTCTGAC
** *
7239907 AATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAACCTGCTA
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTT---C----ACAC-TGAAAGCCAAATCTGCTA
* **
7239972 TGTCTTCGATCTGCTCCTTGTCAACT-CAAGGATGCCAAATCATCTTGGATCTACTTCGATATGA
58 TGTCTTCAATCTGCTCCCCGTCAA-TACAAGGATGCCAAATCATCTTGGATCTACTTC-------
* *
7240036 AAACATCCGAAGGTTAGATCTGCTAAGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAA
115 -AACAT-CGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAA
*
7240101 TCTGTTTCTTTGATTTGTTCTCTGAC
178 TCTGTTTCTTCGATTTGTTCTCTGAC
** * *
7240127 AATACAGAGATGTTAAATCATCTTGGATCCGCTTCA
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCA
7240163 GCGTAAACAC
Statistics
Matches: 600, Mismatches: 50, Indels: 36
0.87 0.07 0.05
Matches are distributed among these distances:
199 221 0.37
202 1 0.00
206 1 0.00
207 1 0.00
208 29 0.05
209 31 0.05
213 1 0.00
217 2 0.00
218 2 0.00
220 308 0.51
221 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (203 bp):
AATACAGAGATGCCAAATCATCTTAGATCTGCTTCACACTGAAAGCCAAATCTGCTATGTCTTCA
ATCTGCTCCCCGTCAATACAAGGATGCCAAATCATCTTGGATCTACTTCAACATCGAAGGTCAGA
TCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGT
TCTCTGAC
Found at i:7239584 original size:78 final size:78
Alignment explanation
Indices: 7239490--7239661 Score: 263
Period size: 78 Copynumber: 2.2 Consensus size: 78
7239480 TCTCTGACAG
* *
7239490 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTTGATCT
1 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
*
7239555 ACTCCCCATCTAA
66 ACTCCCCATCGAA
*
7239568 TACAGAGATGCCAAATCATCTTAGATCTTCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
1 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
* * *
7239633 GCTCTCCGTCGAA
66 ACTCCCCATCGAA
**
7239646 TATGGAGATGCCAAAT
1 TACAGAGATGCCAAAT
7239662 TTGTTTCTTC
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 85 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (78 bp):
TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
ACTCCCCATCGAA
Found at i:7239993 original size:220 final size:220
Alignment explanation
Indices: 7239604--7240193 Score: 977
Period size: 220 Copynumber: 2.7 Consensus size: 220
7239594 CTTCTTCAAT
* *
7239604 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* ** *
7239669 TTCT-ATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTTCTTCAGCGTAAACAC
66 TT-TGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACAC
*
7239733 GTGAAAGCCAAATCTGTTATGTCTTCAATCTGCTCCTTGTCAA-TGCAAGGATGCCAAATCATCT
130 GTGAAAGCCAAATCTGCTATGTCTTCAATCTGCTCCTTGTCAACT-CAAGGATGCCAAATCATCT
* *
7239797 TGGATCTACTTCGATGTGAAGACATCC
194 TGGATCTACTTCGATATGAAAACATCC
**
7239824 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCTTTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
7239889 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* *
7239954 TGAAAGCCAAACCTGCTATGTCTTCGATCTGCTCCTTGTCAACTCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATCTGCTATGTCTTCAATCTGCTCCTTGTCAACTCAAGGATGCCAAATCATCTTG
7240019 GATCTACTTCGATATGAAAACATCC
196 GATCTACTTCGATATGAAAACATCC
*
7240044 GAAGGTTAGATCTGCTAAGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * *
7240109 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCCGCTTCAGCGTAAACACC
66 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* *
7240174 TGAAGGTCAAATCTGCTATG
131 TGAAAGCCAAATCTGCTATG
7240194 CTTTAGCCTG
Statistics
Matches: 346, Mismatches: 22, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
219 1 0.00
220 344 0.99
221 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (220 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACG
TGAAAGCCAAATCTGCTATGTCTTCAATCTGCTCCTTGTCAACTCAAGGATGCCAAATCATCTTG
GATCTACTTCGATATGAAAACATCC
Found at i:7250082 original size:17 final size:17
Alignment explanation
Indices: 7250060--7250094 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7250050 GATATGATAC
7250060 TAAAAT-TATTAAAAAAA
1 TAAAATATA-TAAAAAAA
7250077 TAAAATATATAAAAAAA
1 TAAAATATATAAAAAAA
7250094 T
1 T
7250095 TCAGGGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATATATAAAAAAA
Found at i:7250093 original size:18 final size:17
Alignment explanation
Indices: 7250060--7250093 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7250050 GATATGATAC
*
7250060 TAAAATTATTAAAAAAA
1 TAAAATTATAAAAAAAA
7250077 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
7250094 TTCAGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAAATTATAAAAAAAA
Found at i:7250377 original size:22 final size:23
Alignment explanation
Indices: 7250352--7250394 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7250342 AGGTATCTAC
*
7250352 AAATTAAATC-TCTAAGATTGTA
1 AAATCAAATCTTCTAAGATTGTA
*
7250374 AAATCATATCTTCTAAGATTG
1 AAATCAAATCTTCTAAGATTG
7250395 CATATCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTGTA
Found at i:7250409 original size:19 final size:19
Alignment explanation
Indices: 7250385--7250458 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
7250375 AATCATATCT
7250385 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7250404 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
7250422 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7250441 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
7250459 TGAAGATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 17 0.33
19 35 0.67
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7250436 original size:37 final size:38
Alignment explanation
Indices: 7250378--7250458 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
7250368 ATTGTAAAAT
7250378 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
*
7250414 CA-ATCATATCTAGGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
7250451 CATATCAT
1 CATATCAT
7250459 TGAAGATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 30 0.73
38 5 0.12
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:7251111 original size:29 final size:30
Alignment explanation
Indices: 7251056--7251136 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 30
7251046 AGGCTTTTTT
7251056 TTATAAAAATAACTTAAAATTTTTAATTAA
1 TTATAAAAATAACTTAAAATTTTTAATTAA
* * *
7251086 TTATTAAAATAAC-TCATATTTTTAATTAA
1 TTATAAAAATAACTTAAAATTTTTAATTAA
** * *
7251115 ACACAAAAATAACATAAAATTT
1 TTATAAAAATAACTTAAAATTT
7251137 ACAGTAAAAG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 23 0.56
30 18 0.44
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (30 bp):
TTATAAAAATAACTTAAAATTTTTAATTAA
Found at i:7251502 original size:19 final size:19
Alignment explanation
Indices: 7251475--7251532 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 19
7251465 AAATATATAT
*
7251475 ATTTGAAATTATTTTTAAA
1 ATTTTAAATTATTTTTAAA
7251494 ATTTTAAATATTATTTTT-AA
1 ATTTT-AA-ATTATTTTTAAA
*
7251514 ATATTAAATATATTTTTAA
1 ATTTTAAAT-TATTTTTAA
7251533 TAATATAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
18 2 0.06
19 13 0.39
20 9 0.27
21 9 0.27
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATTTTAAATTATTTTTAAA
Found at i:7251508 original size:21 final size:21
Alignment explanation
Indices: 7251482--7251538 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
7251472 TATATTTGAA
*
7251482 ATTATTTTTAAAATTTTAAAT
1 ATTATTTTTAAAATATTAAAT
7251503 ATTATTTTT-AAATATTAAAT
1 ATTATTTTTAAAATATTAAAT
7251523 A-TATTTTTAATAATAT
1 ATTATTTTTAA-AATAT
7251539 AAAACATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 7 0.21
20 12 0.36
21 14 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTATTTTTAAAATATTAAAT
Found at i:7251513 original size:13 final size:13
Alignment explanation
Indices: 7251495--7251519 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7251485 ATTTTTAAAA
7251495 TTTTAAATATTAT
1 TTTTAAATATTAT
7251508 TTTTAAATATTA
1 TTTTAAATATTA
7251520 AATATATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAAATATTAT
Found at i:7251633 original size:11 final size:11
Alignment explanation
Indices: 7251617--7251675 Score: 50
Period size: 11 Copynumber: 5.1 Consensus size: 11
7251607 ATATTTTAAA
7251617 TTTTAAATATT
1 TTTTAAATATT
7251628 TTTTAAAT-TT
1 TTTTAAATATT
*
7251638 GTTTTAAA-ATA
1 -TTTTAAATATT
7251649 TTTTAAATTATGAT
1 TTTTAAA-TAT--T
7251663 TTTTAAATTATT
1 TTTTAAA-TATT
7251675 T
1 T
7251676 AAAATATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
10 9 0.22
11 16 0.40
12 4 0.10
14 11 0.28
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (11 bp):
TTTTAAATATT
Found at i:7251633 original size:18 final size:19
Alignment explanation
Indices: 7251596--7251637 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
7251586 GTTTTATAAT
7251596 ATTTTAAATGTATATTTTAA
1 ATTTTAAA-GTATATTTTAA
*
7251616 ATTTTAAA-TATTTTTTAA
1 ATTTTAAAGTATATTTTAA
7251634 ATTT
1 ATTT
7251638 GTTTTAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 13 0.62
20 8 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTTAAAGTATATTTTAA
Done.