Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 270 of 433
Found at i:84096458 original size:2 final size:2
Alignment explanation
Indices: 84096451--84096487 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
84096441 AAACATATTC
84096451 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84096488 AAGCATACAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:84097008 original size:22 final size:22
Alignment explanation
Indices: 84096982--84097028 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
84096972 TTTGAATACC
84096982 AATATAAAATTTGTCTCTATTT
1 AATATAAAATTTGTCTCTATTT
84097004 AATATAAAATTTGTCTCTATTT
1 AATATAAAATTTGTCTCTATTT
84097026 AAT
1 AAT
84097029 TCTCTATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (22 bp):
AATATAAAATTTGTCTCTATTT
Found at i:84100108 original size:37 final size:37
Alignment explanation
Indices: 84100058--84100172 Score: 230
Period size: 37 Copynumber: 3.1 Consensus size: 37
84100048 TTATTACGAA
84100058 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
84100095 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
84100132 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
84100169 GTCT
1 GTCT
84100173 CACTCGGAAC
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 78 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:84100283 original size:48 final size:48
Alignment explanation
Indices: 84100225--84100328 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
84100215 TGTTACAACA
84100225 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
84100273 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
84100321 TTCACATT
1 TTCACATT
84100329 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:84100377 original size:49 final size:49
Alignment explanation
Indices: 84100320--84100557 Score: 417
Period size: 49 Copynumber: 4.9 Consensus size: 49
84100310 CACACATATA
*
84100320 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* *
84100369 CTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
84100416 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
84100465 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
84100514 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
84100558 CATCTCATAC
Statistics
Matches: 179, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
47 45 0.25
49 134 0.75
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:84100421 original size:96 final size:97
Alignment explanation
Indices: 84100320--84100557 Score: 415
Period size: 96 Copynumber: 2.5 Consensus size: 97
84100310 CACACATATA
*
84100320 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
84100385 TTGGCCATTAGGCCTTATCAC-ATATATACTC
66 TTGGCCATTAGGCCTTATCACAATATATACAC
* *
84100416 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
84100481 TTGGCCATTAGGCCTTATCACATATATATACAC
66 TTGGCCATTAGGCCTTATCACA-ATATATACAC
*
84100514 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
84100558 CATCTCATAC
Statistics
Matches: 134, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
96 83 0.62
98 51 0.38
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (97 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACAATATATACAC
Found at i:84108882 original size:29 final size:27
Alignment explanation
Indices: 84108848--84108950 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
84108838 TACTCAATCA
*
84108848 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * * *
84108877 CGCACACATAGTGGCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
84108906 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
84108935 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
84108951 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:84114326 original size:19 final size:21
Alignment explanation
Indices: 84114290--84114331 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
84114280 CAATTTAAAT
*
84114290 AATAATAATGATGCAAAATGAA
1 AATAATAATGAT-AAAAATGAA
84114312 AATAAT-ATGATAAAAATGAA
1 AATAATAATGATAAAAATGAA
84114332 GATTATTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 5 0.26
22 6 0.32
ACGTcount: A:0.62, C:0.02, G:0.12, T:0.24
Consensus pattern (21 bp):
AATAATAATGATAAAAATGAA
Found at i:84114863 original size:55 final size:56
Alignment explanation
Indices: 84114721--84114864 Score: 141
Period size: 55 Copynumber: 2.6 Consensus size: 56
84114711 TATTAAGGGC
* * ** *
84114721 CACGGCCGTGTTTTTTTGGCAGGTTCACCCA-GGGTTACTTGGCACGGCCGTGTCG
1 CACGCCCGTGTTATTTTGGCAGGTTCACCCACGGGTTACAAGGCACGGCCGTGTCA
* * ** * *
84114776 CACGCCCGTGTTAATTTGACAGGTTCGGCCACGGTTTA-AAGGCATTGG-CGTGTCA
1 CACGCCCGTGTTATTTTGGCAGGTTCACCCACGGGTTACAAGGCA-CGGCCGTGTCA
* *
84114831 CACGCCCGTGTTGTTTTGGCAGGTTCTCCCACGG
1 CACGCCCGTGTTATTTTGGCAGGTTCACCCACGG
84114865 CCGTGGTGAT
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
55 64 0.90
56 7 0.10
ACGTcount: A:0.14, C:0.27, G:0.31, T:0.28
Consensus pattern (56 bp):
CACGCCCGTGTTATTTTGGCAGGTTCACCCACGGGTTACAAGGCACGGCCGTGTCA
Found at i:84118509 original size:14 final size:13
Alignment explanation
Indices: 84118486--84118517 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
84118476 GGAATATCAA
84118486 AACAATAATTAAG
1 AACAATAATTAAG
84118499 AACACATAATTAAG
1 AACA-ATAATTAAG
84118513 AACAA
1 AACAA
84118518 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:84121671 original size:71 final size:71
Alignment explanation
Indices: 84121585--84121748 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
84121575 CGATTTGTCT
84121585 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84121650 CTTTCA
66 CTTTCA
84121656 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84121721 CTTTCA
66 CTTTCA
84121727 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
84121749 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:84121786 original size:71 final size:70
Alignment explanation
Indices: 84121585--84121782 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
84121575 CGATTTGTCT
* * * *
84121585 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84121650 CTTTCA
65 CTTTCA
* * * *
84121656 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84121721 CTTTCA
65 CTTTCA
* *
84121727 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
84121783 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:84129026 original size:70 final size:71
Alignment explanation
Indices: 84128943--84129105 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
84128933 CGATTTGTCT
84128943 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84129007 CTTTCA
66 CTTTCA
84129013 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84129078 CTTTCA
66 CTTTCA
84129084 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
84129106 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:84129143 original size:71 final size:70
Alignment explanation
Indices: 84128943--84129139 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
84128933 CGATTTGTCT
* * * *
84128943 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84129007 CTTTCA
65 CTTTCA
* * * *
84129013 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84129078 CTTTCA
65 CTTTCA
* *
84129084 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
84129140 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 53 0.45
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:84146576 original size:45 final size:46
Alignment explanation
Indices: 84146413--84146587 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
84146403 TGGTTGAGCA
*
84146413 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
84146459 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
84146504 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
84146552 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84146588 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:84159871 original size:16 final size:17
Alignment explanation
Indices: 84159850--84159882 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
84159840 CACATTGAAG
84159850 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
84159866 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
84159883 CCTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:84165489 original size:27 final size:27
Alignment explanation
Indices: 84165458--84165848 Score: 161
Period size: 27 Copynumber: 14.6 Consensus size: 27
84165448 TAGTTTACAA
* *
84165458 AATTACTAAAATACCCTCGATTTGTAG
1 AATTACCAAAATACCCTCGATTTATAG
*** *
84165485 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCAAAATACCCTCGATTTATAG
**** *
84165512 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAATACCCTCGATTTATAG
****
84165539 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCAAAATACCCTCGATTTATAG
****
84165566 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCAAAATACCCTCGATTTATAG
** *
84165593 AATTACC-ATTTAGCCTCGATTTATAG
1 AATTACCAAAATACCCTCGATTTATAG
*** *
84165619 AATTACCATTTTACCCTTGATTTATAG
1 AATTACCAAAATACCCTCGATTTATAG
****** * * * *
84165646 AATTATTGTTTTACCCTTGGTTTACAA
1 AATTACCAAAATACCCTCGATTTATAG
* *
84165673 AATTACCAAAATACCCTCGA-TCAGTAA
1 AATTACCAAAATACCCTCGATTTA-TAG
* * * *
84165700 AATTACCAAAATACCCT-GGTCTGTAA
1 AATTACCAAAATACCCTCGATTTATAG
* * * * *
84165726 AATTGCTAAAATACCC-CTGGTTTGTAA
1 AATTACCAAAATACCCTC-GATTTATAG
* *
84165753 AATTACCAAAATACCC-CTAGTTTGTA-
1 AATTACCAAAATACCCTCGA-TTTATAG
* *
84165779 AAGTTACCAAAATACCACT-GGTTTGT-G
1 AA-TTACCAAAATACC-CTCGATTTATAG
* * * * *
84165806 AAATTATCGAAATA-CCTCAATTTGTAA
1 -AATTACCAAAATACCCTCGATTTATAG
84165833 AATTACCAAAATACCC
1 AATTACCAAAATACCC
84165849 CTAATTTACA
Statistics
Matches: 301, Mismatches: 49, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
25 2 0.01
26 63 0.21
27 233 0.77
28 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTATAG
Found at i:84165533 original size:54 final size:54
Alignment explanation
Indices: 84165469--84165679 Score: 289
Period size: 54 Copynumber: 3.9 Consensus size: 54
84165459 ATTACTAAAA
*
84165469 TACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
84165523 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
84165577 TACCCTCGATTTATAGAATTACCA-TTTAGCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *** * * *
84165630 TACCCTTGATTTATAGAATTATTGTTTTACCCTTGGTTTACAAAATTACC
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACC
84165680 AAAATACCCT
Statistics
Matches: 139, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 47 0.34
54 92 0.66
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:84165643 original size:80 final size:80
Alignment explanation
Indices: 84165469--84165680 Score: 298
Period size: 80 Copynumber: 2.6 Consensus size: 80
84165459 ATTACTAAAA
* * *
84165469 TACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACC-ATTTACCCTCGATT
*
84165534 TACAGAATTACCGTTT
65 TACAGAATTACCATTT
* *
84165550 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTAGCCTCGATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTACCCTCGATTT
*
84165615 ATAGAATTACCATTT
66 ACAGAATTACCATTT
* ** * * *
84165630 TACCCTTGATTTATAGAATTATTGTTTTACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCA
84165681 AAATACCCTC
Statistics
Matches: 117, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
80 70 0.60
81 47 0.40
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (80 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTACCCTCGATTT
ACAGAATTACCATTT
Found at i:84165715 original size:134 final size:134
Alignment explanation
Indices: 84165472--84165716 Score: 312
Period size: 134 Copynumber: 1.8 Consensus size: 134
84165462 ACTAAAATAC
*
84165472 CCTCGATTTGTAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
1 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
* **** * * ****
84165537 AGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCAT
66 AAAATTACCAAAATACCCTCGATTCATAAAATTACCAAAATACCCTCGATTTATAGAATTACCAT
84165602 TTAG
131 TTAG
* * ** * *
84165606 CCTCGATTTATAGAATTACCATTTTACCCTTGATTTATAGAATTATTGTTTTACCCTTGGTTTAC
1 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
84165671 AAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAAATACCCT
66 AAAATTACCAAAATACCCTCGATTCA-TAAAATTACCAAAATACCCT
84165717 GGTCTGTAAA
Statistics
Matches: 92, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
133 2 0.02
134 90 0.98
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (134 bp):
CCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
AAAATTACCAAAATACCCTCGATTCATAAAATTACCAAAATACCCTCGATTTATAGAATTACCAT
TTAG
Found at i:84165801 original size:54 final size:54
Alignment explanation
Indices: 84165671--84165847 Score: 198
Period size: 53 Copynumber: 3.3 Consensus size: 54
84165661 CTTGGTTTAC
* ** * *
84165671 AAAATTACCAAAATACC-CTCGATCAGTAAAATTACCAAAATA-CCCTGGTCTGT
1 AAAATTACCAAAATACCACT-GGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* * *
84165724 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* * * * * *
84165778 AAAGTTACCAAAATACCACTGGTTTGTGAAATTATCGAAATACCTC-AATTTGT
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
84165831 AAAATTACCAAAATACC
1 AAAATTACCAAAATACC
84165848 CCTAATTTAC
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
53 56 0.53
54 49 0.47
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (54 bp):
AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
Found at i:84165830 original size:80 final size:81
Alignment explanation
Indices: 84165671--84165851 Score: 217
Period size: 80 Copynumber: 2.3 Consensus size: 81
84165661 CTTGGTTTAC
*
84165671 AAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAA
1 AAAATTACCAAAATACCCCTAGATCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAA
**
84165735 AATACCCCTGGTTTGT
66 AATACCCCTAATTTGT
** * * * *
84165751 AAAATTACCAAAATACCCCTAG-TTTGTAAAGTTACCAAAATACCACTGGTTTGTGAAATT-ATC
1 AAAATTACCAAAATACCCCTAGATCAGTAAAATTACCAAAATACC-CTGGTCTGTAAAATTGCT-
* *
84165814 GAAATACCTC-AATTTGT
64 AAAATACCCCTAATTTGT
84165831 AAAATTACCAAAATACCCCTA
1 AAAATTACCAAAATACCCCTA
84165852 ATTTACAAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
80 61 0.70
81 26 0.30
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAGATCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAA
AATACCCCTAATTTGT
Found at i:84165863 original size:53 final size:53
Alignment explanation
Indices: 84165671--84165875 Score: 173
Period size: 53 Copynumber: 3.8 Consensus size: 53
84165661 CTTGGTTTAC
* ** * ** *
84165671 AAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCAAAATA-CCCTGGTCTGT
1 AAAATTACCAAAATACCCCT-GGTTTGTAAAATTA-CGAAATACCCCTAATTTGT
* * * *
84165724 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CGAAATACCCCTAATTTGT
* * * *
84165778 AAAGTTACCAAAATACCACTGGTTTGTGAAATTATCGAAATACCTC-AATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CGAAATACCCCTAATTTGT
** **
84165831 AAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAATACCC
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTAC-GAAATACCC
84165876 TTGACTTTTT
Statistics
Matches: 125, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.01
53 73 0.58
54 51 0.41
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGGTTTGTAAAATTACGAAATACCCCTAATTTGT
Found at i:84165865 original size:27 final size:27
Alignment explanation
Indices: 84165657--84165850 Score: 196
Period size: 27 Copynumber: 7.3 Consensus size: 27
84165647 ATTATTGTTT
* **
84165657 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCCTGGTTTGTAAAATTACCAAAA
* **
84165684 TA-CCCTCGATCAGTAAAATTACCAAAA
1 TACCCCT-GGTTTGTAAAATTACCAAAA
* * *
84165711 TA-CCCTGGTCTGTAAAATTGCTAAAA
1 TACCCCTGGTTTGTAAAATTACCAAAA
84165737 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCCTGGTTTGTAAAATTACCAAAA
* *
84165764 TACCCCTAGTTTGTAAAGTTACCAAAA
1 TACCCCTGGTTTGTAAAATTACCAAAA
* * * *
84165791 TACCACTGGTTTGTGAAATTATCGAAA
1 TACCCCTGGTTTGTAAAATTACCAAAA
* **
84165818 TACCTC-AATTTGTAAAATTACCAAAA
1 TACCCCTGGTTTGTAAAATTACCAAAA
84165844 TACCCCT
1 TACCCCT
84165851 AATTTACAAA
Statistics
Matches: 136, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 41 0.30
27 95 0.70
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
TACCCCTGGTTTGTAAAATTACCAAAA
Found at i:84165871 original size:27 final size:27
Alignment explanation
Indices: 84165806--84165931 Score: 80
Period size: 27 Copynumber: 4.6 Consensus size: 27
84165796 CTGGTTTGTG
* **
84165806 AAATTATC-GAAATACCTC-AATTTGTA
1 AAATTA-CAGAAATACCCCTAATTTACA
84165832 AAATTACCA-AAATACCCCTAATTTACA
1 AAATTA-CAGAAATACCCCTAATTTACA
* *
84165859 AAATTACAGAAATACCCTTGACTTTTTA-A
1 AAATTACAGAAATACCCCT-A--ATTTACA
* ** **
84165888 AAATTATAGAAATACCATTGGTTTACA
1 AAATTACAGAAATACCCCTAATTTACA
*
84165915 AAATTACTGAAATACCC
1 AAATTACAGAAATACCC
84165932 TTGGTTTGTA
Statistics
Matches: 80, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
26 21 0.26
27 36 0.45
28 1 0.01
29 18 0.22
30 4 0.05
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATTACAGAAATACCCCTAATTTACA
Found at i:84165935 original size:27 final size:27
Alignment explanation
Indices: 84165853--84165938 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
84165843 ATACCCCTAA
* *
84165853 TTTACAAAATTACAGAAATACCCTTGACTT
1 TTTACAAAATTACTGAAATACCCTTG---G
*
84165883 TTTA-AAAATTA-TAGAAATACCATTGG
1 TTTACAAAATTACT-GAAATACCCTTGG
84165909 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTGG
84165936 TTT
1 TTT
84165939 GTAGATTTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
26 4 0.08
27 22 0.45
28 1 0.02
29 18 0.37
30 4 0.08
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGG
Found at i:84166034 original size:27 final size:27
Alignment explanation
Indices: 84165979--84166056 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
84165969 AAATGACTAA
* * *
84165979 AATACCCCTAATA-GGTAAAAAGACTGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
*
84166006 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAATGACCGT
* *
84166033 AATACCCTTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
84166057 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:84166755 original size:20 final size:20
Alignment explanation
Indices: 84166721--84166796 Score: 113
Period size: 20 Copynumber: 3.9 Consensus size: 20
84166711 TATACGTGGG
84166721 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
84166738 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
84166759 GTATGATATGCACATGATAT
1 GTATGATATGCACATGATAT
*
84166779 GTATGAAATGCACATGAT
1 GTATGATATGCACATGAT
84166797 GAATTCATAA
Statistics
Matches: 54, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 43 0.80
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:84166757 original size:11 final size:11
Alignment explanation
Indices: 84166741--84166796 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
84166731 CATGATTGAT
84166741 ATGATATGCAC
1 ATGATATGCAC
*
84166752 ATGATATG--T
1 ATGATATGCAC
84166761 ATGATATGCAC
1 ATGATATGCAC
*
84166772 ATGATATG--T
1 ATGATATGCAC
*
84166781 ATGAAATGCAC
1 ATGATATGCAC
84166792 ATGAT
1 ATGAT
84166797 GAATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:84166917 original size:25 final size:26
Alignment explanation
Indices: 84166846--84166942 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
84166836 GAGGAAGTGT
* *
84166846 AAAAGGGCTTATGCCTCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
84166872 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
84166898 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
84166923 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
84166943 ATTAAAGAGG
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 33 0.49
26 34 0.51
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:84166931 original size:51 final size:51
Alignment explanation
Indices: 84166846--84166942 Score: 142
Period size: 51 Copynumber: 1.9 Consensus size: 51
84166836 GAGGAAGTGT
* **
84166846 AAAAGGGCTTATGCCTCAATTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTT-TGCCCCAGTTTATTG
*
84166898 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTTTGCCCCAGTT
84166943 ATTAAAGAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
50 10 0.24
51 21 0.51
52 10 0.24
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTTTGCCCCAGTTTATTG
Found at i:84167146 original size:42 final size:42
Alignment explanation
Indices: 84167087--84167178 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
84167077 TAGTCTCCCC
*
84167087 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
* *
84167129 AAATGGGCTTGCTTACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
84167171 AAATGGGC
1 AAATGGGC
84167179 CTATGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:84167246 original size:31 final size:31
Alignment explanation
Indices: 84167202--84167285 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
84167192 CGTTTACAAT
*
84167202 AAAGTCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
84167233 AAAGGTTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
84167264 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
84167286 TCGAGACTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 4 0.08
31 44 0.92
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:84170322 original size:67 final size:68
Alignment explanation
Indices: 84170251--84170401 Score: 177
Period size: 67 Copynumber: 2.2 Consensus size: 68
84170241 CATCATGTGT
* * * *
84170251 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGT-ATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
84170313 TGTAG
64 TGTAG
* * *
84170318 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
84170381 GTAG
65 GTAG
84170385 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
84170402 TAAACTGGCC
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
63 20 0.28
64 6 0.08
65 1 0.01
66 3 0.04
67 40 0.56
68 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:84173705 original size:46 final size:46
Alignment explanation
Indices: 84173539--84173705 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 46
84173529 CCCATAAGCA
* * * *
84173539 AACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATG
* * * * ** *
84173585 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCACG
1 AACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCATCCAT-AAATG
*
84173632 AACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATG
1 AACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATG
* *
84173678 AACTTGGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGCTCGGA
84173706 TGCCCAAATA
Statistics
Matches: 98, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 63 0.64
47 35 0.36
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATG
Found at i:84173705 original size:93 final size:93
Alignment explanation
Indices: 84173539--84173709 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
84173529 CCCATAAGCA
* * * *
84173539 AACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCAAC
84173604 GAGCTCGGATGCCTAGTTACATCTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
* *
84173632 AACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTTGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCAAC
*
84173697 GAGTTCGGATGCC
66 GAGCTCGGATGCC
84173710 CAAATATCCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACG
Found at i:84175897 original size:40 final size:40
Alignment explanation
Indices: 84175850--84176021 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 40
84175840 CTTTGGGACC
* * *
84175850 TAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCT
1 TAGCCCGGATATAGTAATTCGCACGAATGCCTTCGGGTCT
* * * *
84175890 TAACCCGGATTTGGTAACTT-GCACAAATGCCTTCGGGTCT
1 TAGCCCGGATATAGTAA-TTCGCACGAATGCCTTCGGGTCT
** * *
84175930 TAGCCCGGATATAACAACTCGCACGAATACCTTCGGGTCT
1 TAGCCCGGATATAGTAATTCGCACGAATGCCTTCGGGTCT
* * * * * *
84175970 TAGCCCGGATATAATTACTAGCA-TAATTGCCTTCGGGACT
1 TAGCCCGGATATAGTAATTCGCACGAA-TGCCTTCGGGTCT
84176010 TAGCCCGGATAT
1 TAGCCCGGATAT
84176022 CATTCCAATG
Statistics
Matches: 108, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.03
40 103 0.95
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
TAGCCCGGATATAGTAATTCGCACGAATGCCTTCGGGTCT
Found at i:84175952 original size:80 final size:80
Alignment explanation
Indices: 84175868--84176021 Score: 209
Period size: 80 Copynumber: 1.9 Consensus size: 80
84175858 TTATAGTGAT
* * * ** * *
84175868 TCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAG
1 TCGCACGAATACCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAG
84175933 CCCGGATATAACAAC
66 CCCGGATATAACAAC
* * * *
84175948 TCGCACGAATACCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAATTGCCTTCGGGACTTAG
1 TCGCACGAATACCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAG
84176013 CCCGGATAT
66 CCCGGATAT
84176022 CATTCCAATG
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 63 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (80 bp):
TCGCACGAATACCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAG
CCCGGATATAACAAC
Found at i:84179367 original size:29 final size:29
Alignment explanation
Indices: 84179334--84179421 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
84179324 CAAAGATAAC
84179334 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAAACCGAATAAAGAAATCCAAGATA
* *
84179363 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAAACCGAATAAAGAAATCCAAG-ATA
* * * *
84179392 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACC-GAATAAAGAAATCCAAGATA
84179422 CGATACTATC
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 30 0.61
30 15 0.31
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAAACCGAATAAAGAAATCCAAGATA
Found at i:84179392 original size:15 final size:15
Alignment explanation
Indices: 84179334--84179412 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
84179324 CAAAGATAAC
*
84179334 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
84179348 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
84179363 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
84179377 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
84179392 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
84179407 AAGAAA
1 AAGAAA
84179413 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:84179421 original size:15 final size:15
Alignment explanation
Indices: 84179345--84179421 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
84179335 AGAAAACCGA
84179345 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
84179360 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
84179374 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
84179388 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
84179404 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
84179419 ATA
1 ATA
84179422 CGATACTATC
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:84182468 original size:92 final size:92
Alignment explanation
Indices: 84182311--84182482 Score: 308
Period size: 92 Copynumber: 1.9 Consensus size: 92
84182301 CGCCCATAAG
* *
84182311 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
84182376 ACGAGCTCGGATGCCTAGTTACATTCA
66 ACGAGCTCGGATGCCTAGTTACATTCA
*
84182403 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
84182468 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
84182483 CAAATATCCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTCA
Found at i:84182478 original size:46 final size:46
Alignment explanation
Indices: 84182304--84182478 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
84182294 TGTAACCCGC
* *
84182304 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * * *
84182350 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* * *
84182396 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
84182442 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
84182479 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
45 5 0.05
46 100 0.92
47 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:84185696 original size:27 final size:27
Alignment explanation
Indices: 84185666--84185905 Score: 345
Period size: 27 Copynumber: 8.9 Consensus size: 27
84185656 ATTATTGAAA
* *
84185666 TACCCTTGATTTGTAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
84185693 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
84185720 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
84185747 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
84185774 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
84185801 TGCCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
84185828 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * **
84185855 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
84185882 TACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTATAGAATTACCA
84185906 AAATACCCTC
Statistics
Matches: 197, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 197 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:84185912 original size:27 final size:27
Alignment explanation
Indices: 84185882--84186179 Score: 160
Period size: 27 Copynumber: 11.0 Consensus size: 27
84185872 ATTACTGTTT
*
84185882 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
84185909 TACCC-TCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-TAAAATTACCAAAA
* * *
84185936 TACCC-TGG-TCAGTAAAATTGCTAAAA
1 TACCCTTGGTTTA-TAAAATTACCAAAA
* *
84185962 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
84185989 TACCCCTAGTTTTTAAAGTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
84186016 TACCAC-TGGTTTGTGAAATTATCGAAA
1 TACC-CTTGGTTTATAAAATTACCAAAA
** *
84186043 TA-CCTTCAATTTGTAAAATTACCAAAA
1 TACCCTT-GGTTTATAAAATTACCAAAA
* ** * *
84186070 TACCCCTAATTTACAAAATT-TCAGAAA
1 TACCCTTGGTTTATAAAATTACCA-AAA
* * *
84186097 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAT-AAAATTACCA-AAA
* * **
84186126 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
84186153 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
84186180 CACCATTGTA
Statistics
Matches: 212, Mismatches: 47, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
25 1 0.00
26 29 0.14
27 152 0.72
28 12 0.06
29 18 0.08
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACCAAAA
Found at i:84186293 original size:27 final size:28
Alignment explanation
Indices: 84186218--84186294 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 28
84186208 ACCCCTAATA
**
84186218 GGTAAAAACACCGTAA-AGCCCTTGTAG
1 GGTAAAATGACCGTAATAGCCCTTGTAG
* *
84186245 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAATAGCCCTTGTAG
84186272 GGTAAAATGA-CG-AATATGCCCTT
1 GGTAAAATGACCGTAATA-GCCCTT
84186295 ATGTTCCGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
25 4 0.10
26 2 0.05
27 35 0.83
28 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (28 bp):
GGTAAAATGACCGTAATAGCCCTTGTAG
Found at i:84186854 original size:20 final size:20
Alignment explanation
Indices: 84186820--84186875 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
84186810 GATGCGTGGG
84186820 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
84186837 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
*
84186858 GTATGAAATGCACATGAT
1 GTATGATATGCACATGAT
84186876 GAATTCATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
17 1 0.03
18 8 0.24
20 23 0.68
21 2 0.06
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.34
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:84186999 original size:25 final size:26
Alignment explanation
Indices: 84186926--84187019 Score: 147
Period size: 26 Copynumber: 3.7 Consensus size: 26
84186916 AGGAAGTGCA
84186926 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
84186952 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
84186978 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
84187003 AAAAGGGCTT-TGCCCCA
1 AAAAGGGCTTATGCCCCA
84187020 ATTATTAAAG
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 29 0.45
26 35 0.55
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:84187006 original size:51 final size:51
Alignment explanation
Indices: 84186926--84187022 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
84186916 AGGAAGTGCA
**
84186926 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAATTTATTG
84186978 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAATT
84187023 ATTAAAGAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 10 0.23
51 23 0.53
52 10 0.23
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAATTTATTG
Found at i:84187226 original size:42 final size:42
Alignment explanation
Indices: 84187167--84187258 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
84187157 TAGTCTCCCC
*
84187167 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
84187209 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
84187251 AAATGGGC
1 AAATGGGC
84187259 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:84187317 original size:31 final size:31
Alignment explanation
Indices: 84187282--84187365 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
84187272 CGTTTACAAT
*
84187282 AAAGGCTTCGGCCCAGTGATATGATTTATTA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
84187313 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
84187344 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
84187366 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 4 0.08
31 46 0.92
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:84194922 original size:29 final size:29
Alignment explanation
Indices: 84194898--84194990 Score: 177
Period size: 29 Copynumber: 3.2 Consensus size: 29
84194888 TCGCACACCC
84194898 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCGTATATTTCCAGCATGCACACTT
84194927 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCGTATATTTCCAGCATGCACACTT
*
84194956 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCGTATATTTCCAGCATGCACACTT
84194985 AGTGCC
1 AGTGCC
84194991 AATCTCGTCA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (29 bp):
AGTGCCGTATATTTCCAGCATGCACACTT
Found at i:84194991 original size:29 final size:29
Alignment explanation
Indices: 84194832--84194991 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
84194822 ACTCGATTTC
* * **
84194832 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
84194861 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
84194889 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
*
84194919 GCACACTTAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
84194948 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
84194977 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
84194992 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:84206757 original size:33 final size:32
Alignment explanation
Indices: 84206708--84206771 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
84206698 CCTCGTGCAA
* *
84206708 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
*
84206741 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
84206772 GTGACTTCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:84206761 original size:72 final size:65
Alignment explanation
Indices: 84206625--84206764 Score: 163
Period size: 72 Copynumber: 2.0 Consensus size: 65
84206615 GAGGAAGCAT
* * *
84206625 TCTGGCAGCCTCTGCAATCTGGTGGCCTCACCACATATATCTGTTCTGGTGACTTCGTCACAATA
1 TCTGGCAGCCTCTGCAATCTGGTGGCCTCACCACATATATCTGTTCTGGTGACCTAGCCACAATA
* * *
84206690 TCTGGCAGCCTCGTGCAATCTGGTGGCTTCGCCACATATATATATATCTGTTCTGGTGGCCTAGC
1 TCTGGCAGCCTC-TGCAATCTGGTGGCCTCACCAC------ATATATCTGTTCTGGTGACCTAGC
84206755 CACAATA
59 CACAATA
84206762 TCT
1 TCT
84206765 ATATCTGGTG
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
65 12 0.19
66 20 0.32
72 30 0.48
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (65 bp):
TCTGGCAGCCTCTGCAATCTGGTGGCCTCACCACATATATCTGTTCTGGTGACCTAGCCACAATA
Found at i:84208436 original size:13 final size:13
Alignment explanation
Indices: 84208418--84208444 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84208408 GAAGTAATCG
84208418 CACACGGGTGTGT
1 CACACGGGTGTGT
84208431 CACACGGGTGTGT
1 CACACGGGTGTGT
84208444 C
1 C
84208445 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CACACGGGTGTGT
Found at i:84208511 original size:34 final size:34
Alignment explanation
Indices: 84208465--84208532 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
84208455 CCAGGTTGAG
*
84208465 TCCAATTTGAAAAAGGCTAATTTTGAGGGCTCTT
1 TCCAATTCGAAAAAGGCTAATTTTGAGGGCTCTT
84208499 TCCAATTCGAAAAAGGCTAATTTTGAGGGCTCTT
1 TCCAATTCGAAAAAGGCTAATTTTGAGGGCTCTT
84208533 AGGAATTCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (34 bp):
TCCAATTCGAAAAAGGCTAATTTTGAGGGCTCTT
Found at i:84218139 original size:55 final size:54
Alignment explanation
Indices: 84218010--84218205 Score: 174
Period size: 55 Copynumber: 3.6 Consensus size: 54
84218000 CTTACCATTG
* *
84218010 CCATGTCTCGACATGGTCTTACA-TGGTATCCTTGCCTTATGAACTCACTAATG
1 CCATGTCTTGACATGGTCTTACATTGGTATCCTTGCCTTATGAACTCACTAATA
* * *
84218063 CCATGCCTTGGCATGGTCTTACATTGG-A-CCTTTGCCTTATAGAAACTTA-TCAATA
1 CCATGTCTTGACATGGTCTTACATTGGTATCC-TTGCCTTAT-G-AACTCACT-AATA
* * * *
84218118 CCATGTCTTGACATGGTCTTACA-TGATATCCTTGCCTTA-GAAACCTTACCAATTG
1 CCATGTCTTGACATGGTCTTACATTGGTATCCTTGCCTTATG-AA-CTCACTAA-TA
*
84218173 CCAT-TCCTTGGCATGGTCTTACA-TGGTATCCTT
1 CCATGT-CTTGACATGGTCTTACATTGGTATCCTT
84218206 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
52 2 0.02
53 34 0.28
54 14 0.12
55 68 0.57
56 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (54 bp):
CCATGTCTTGACATGGTCTTACATTGGTATCCTTGCCTTATGAACTCACTAATA
Found at i:84224650 original size:40 final size:40
Alignment explanation
Indices: 84224569--84224746 Score: 232
Period size: 40 Copynumber: 4.5 Consensus size: 40
84224559 CAACCAAGTA
** * *
84224569 CCTTCGGGGTTTAG-CCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
84224608 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
84224648 CCTTCGGGACTTAGCCTGGAAATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
84224688 CCTTCGGGACTTAGCTCGAAAATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
84224728 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
84224747 TTATCATCCG
Statistics
Matches: 120, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 12 0.10
40 108 0.90
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:84231834 original size:40 final size:40
Alignment explanation
Indices: 84231780--84231944 Score: 226
Period size: 40 Copynumber: 4.2 Consensus size: 40
84231770 CCTTCGGGGT
* * *
84231780 TTAG-CCGGATATAGTTACTCGCTCAAATGCCTTAGGGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTAGGGAC
** * *
84231819 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTAGGGAC
*
84231859 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTAGGGAC
*
84231899 TTAGCCCGAAAATAGTAACTCGCACAAATGCCTTCA-GGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTT-AGGGAC
84231939 TTAGCC
1 TTAGCC
84231945 TAGTTATCGT
Statistics
Matches: 114, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 4 0.04
40 110 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTAGGGAC
Found at i:84248185 original size:40 final size:40
Alignment explanation
Indices: 84248149--84248241 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
84248139 CAGCTATTTG
*
84248149 TGGCACTTAGTGTGCGATTCGACATAACTTTGGCTATATA
1 TGGCACTTAGTGTACGATTCGACATAACTTTGGCTATATA
* * * * * *
84248189 TTGCACTTAGTGTACGATTTGAGATAGCTTTGACTATGTA
1 TGGCACTTAGTGTACGATTCGACATAACTTTGGCTATATA
* *
84248229 CGACACTTAGTGT
1 TGGCACTTAGTGT
84248242 GTGAGATATC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.37
Consensus pattern (40 bp):
TGGCACTTAGTGTACGATTCGACATAACTTTGGCTATATA
Found at i:84248276 original size:28 final size:28
Alignment explanation
Indices: 84248230--84248297 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
84248220 GACTATGTAC
** *
84248230 GACACTTAGTGTGTGAGATATCGAGTGT
1 GACACTTAGTGTGCAAGATATCGAGTAT
*
84248258 GGCACTTAGTGTGCAAGATATCGAGTAT
1 GACACTTAGTGTGCAAGATATCGAGTAT
84248286 GACACTTAGTGT
1 GACACTTAGTGT
84248298 ACGAGGCATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
GACACTTAGTGTGCAAGATATCGAGTAT
Found at i:84250431 original size:45 final size:45
Alignment explanation
Indices: 84250367--84250454 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
84250357 GAGCTATCTG
84250367 ATCTGAACTCATTGAGTTGTAGTCTAAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGTAGTCTAAGTTCATGATATATGTGAC
* *
84250412 ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATGTATGTG
1 ATCTGAACTCATTGAGTTGTAGTCTAAGTTCATGATATATGTG
84250455 GCACATGTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTAGTCTAAGTTCATGATATATGTGAC
Found at i:84250821 original size:2 final size:2
Alignment explanation
Indices: 84250814--84250841 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
84250804 TGGTAAGAAC
84250814 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84250842 GAAGAATAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84255164 original size:30 final size:30
Alignment explanation
Indices: 84255130--84255190 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
84255120 TCCTTAACTC
84255130 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
84255160 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
84255190 A
1 A
84255191 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:84260764 original size:28 final size:29
Alignment explanation
Indices: 84260666--84260764 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
84260656 TCACAAATTG
* *
84260666 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
84260695 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
* *
84260723 GCACTAAGTATGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
84260751 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
84260765 GGCTTATTAC
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
28 38 0.66
29 20 0.34
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:84280462 original size:14 final size:13
Alignment explanation
Indices: 84280439--84280468 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
84280429 GGGATATCAA
84280439 AACAATAATTAAG
1 AACAATAATTAAG
84280452 AACACATAATTAAG
1 AACA-ATAATTAAG
84280466 AAC
1 AAC
84280469 GAGTTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:84281488 original size:21 final size:21
Alignment explanation
Indices: 84281464--84281545 Score: 58
Period size: 21 Copynumber: 3.8 Consensus size: 21
84281454 CTATGAACTA
84281464 TGTGATCTGAATTCATTGAGT
1 TGTGATCTGAATTCATTGAGT
* * *
84281485 TGTGGTCTGAGTTCA-TGATAT
1 TGTGATCTGAATTCATTGA-GT
* *
84281506 ATGTGGCATTTGAACTCATTGAGT
1 -TGT-G-ATCTGAATTCATTGAGT
* *
84281530 TGTGGTCTAAATTCAT
1 TGTGATCTGAATTCAT
84281546 GATGTATGTG
Statistics
Matches: 44, Mismatches: 12, Indels: 10
0.67 0.18 0.15
Matches are distributed among these distances:
20 3 0.07
21 22 0.50
22 4 0.09
23 4 0.09
24 8 0.18
25 3 0.07
ACGTcount: A:0.23, C:0.11, G:0.24, T:0.41
Consensus pattern (21 bp):
TGTGATCTGAATTCATTGAGT
Found at i:84284150 original size:40 final size:40
Alignment explanation
Indices: 84284054--84284232 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
84284044 CGAATGATAT
* * * *
84284054 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
84284095 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
84284135 CCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
84284175 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
84284215 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
84284233 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 91 0.78
41 25 0.22
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:84284188 original size:80 final size:81
Alignment explanation
Indices: 84284054--84284232 Score: 236
Period size: 80 Copynumber: 2.2 Consensus size: 81
84284044 CGAATGATAT
* * *
84284054 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
84284119 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * *
84284135 CCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
84284198 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
84284215 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
84284233 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 59 0.69
81 25 0.29
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:84284253 original size:40 final size:40
Alignment explanation
Indices: 84284175--84284253 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
84284165 GTTACTAAAT
* * *
84284175 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* *
84284215 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATA
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATA
84284254 TCCAGTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
39 2 0.06
40 31 0.94
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:84285893 original size:93 final size:93
Alignment explanation
Indices: 84285780--84285951 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
84285770 TGCCCATAAG
* * *
84285780 CGAACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84285845 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
84285873 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84285938 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
84285952 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:84285948 original size:46 final size:46
Alignment explanation
Indices: 84285773--84285948 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
84285763 TGTAACCTGC
* * * *
84285773 CCATAAGCGAACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
84285819 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
84285869 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
84285912 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
84285949 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:84285967 original size:46 final size:46
Alignment explanation
Indices: 84285822--84285960 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
84285812 TTCGCATCCA
84285822 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
84285870 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
84285915 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
84285961 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:84287353 original size:46 final size:46
Alignment explanation
Indices: 84287298--84287478 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
84287288 TAGGATGGTT
84287298 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
84287344 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
84287390 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
84287437 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84287479 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:84287459 original size:93 final size:93
Alignment explanation
Indices: 84287300--84287470 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
84287290 GGATGGTTGA
* *
84287300 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84287365 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
84287393 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84287458 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84287471 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84290442 original size:15 final size:15
Alignment explanation
Indices: 84290422--84290490 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
84290412 GTATCTTGGG
84290422 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
84290437 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
84290452 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
84290467 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
84290482 TTTCTTTAT
1 TTTCTTTAT
84290491 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:84290491 original size:30 final size:30
Alignment explanation
Indices: 84290413--84290500 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
84290403 CATAGTATCG
* * * *
84290413 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
84290443 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
84290473 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
84290501 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:84292913 original size:46 final size:46
Alignment explanation
Indices: 84292858--84293038 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
84292848 TAGGATGGTT
84292858 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
84292904 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
84292950 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
84292997 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84293039 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:84293019 original size:93 final size:93
Alignment explanation
Indices: 84292860--84293030 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
84292850 GGATGGTTGA
* *
84292860 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84292925 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
84292953 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84293018 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84293031 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84296023 original size:15 final size:15
Alignment explanation
Indices: 84295984--84296061 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
84295974 GTATCTTGGG
*
84295984 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
84295999 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
84296014 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
84296028 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
84296043 TTTCTTT-TTC-GGT
1 TTTCTTTATTCTGGA
84296056 TTTCTT
1 TTTCTT
84296062 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
13 10 0.19
14 9 0.17
15 33 0.63
ACGTcount: A:0.09, C:0.18, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:84298579 original size:46 final size:46
Alignment explanation
Indices: 84298415--84298585 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
84298405 GGTTGAGCAT
*
84298415 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
84298459 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GAATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
84298505 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
84298553 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
84298586 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 5 0.05
43 2 0.02
44 28 0.26
46 33 0.31
48 30 0.28
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:84299939 original size:16 final size:16
Alignment explanation
Indices: 84299920--84299951 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
84299910 TGTAAAATTC
84299920 ATAAGTAATAAACTCG
1 ATAAGTAATAAACTCG
*
84299936 ATAAGTGATAAACTCG
1 ATAAGTAATAAACTCG
84299952 TGGTAAGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.25
Consensus pattern (16 bp):
ATAAGTAATAAACTCG
Found at i:84304600 original size:93 final size:93
Alignment explanation
Indices: 84304488--84304659 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
84304478 GCCCATAAGT
* *
84304488 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84304553 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
84304581 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84304646 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
84304660 CAATATCCAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84304655 original size:46 final size:46
Alignment explanation
Indices: 84304480--84304655 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
84304470 TGTAACCCGC
* * *
84304480 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
84304526 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
84304576 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
84304619 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84304656 TGCCCAATAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:84307082 original size:30 final size:30
Alignment explanation
Indices: 84307038--84307126 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
84307028 CAAAGATAAC
84307038 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
84307067 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
84307097 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
84307127 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:84307086 original size:15 final size:15
Alignment explanation
Indices: 84307038--84307117 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
84307028 CAAAGATAAC
*
84307038 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
84307052 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
84307067 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
84307082 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
84307097 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
84307112 AAGAAA
1 AAGAAA
84307118 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:84307126 original size:15 final size:15
Alignment explanation
Indices: 84307049--84307126 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
84307039 AGAAAACCGA
84307049 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
84307064 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
84307078 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
84307093 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
84307109 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
84307124 ATA
1 ATA
84307127 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:84310184 original size:93 final size:93
Alignment explanation
Indices: 84310072--84310243 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
84310062 GCCCATAAGT
* *
84310072 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84310137 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
84310165 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84310230 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
84310244 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84310239 original size:46 final size:46
Alignment explanation
Indices: 84310064--84310239 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
84310054 TGTAACCCGC
* * *
84310064 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
84310110 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
84310160 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
84310203 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84310240 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:84311784 original size:40 final size:40
Alignment explanation
Indices: 84311709--84311890 Score: 262
Period size: 40 Copynumber: 4.6 Consensus size: 40
84311699 AACCCAAGTA
* *
84311709 CCTTCAGGATTTAG-CCGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-T-AGCACAAATG
* *
84311748 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
84311788 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
84311828 CCTTCGGGACTTAGCCCGAATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
84311868 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
84311891 CATTCGAATA
Statistics
Matches: 130, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 12 0.09
40 115 0.88
41 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:84324168 original size:70 final size:71
Alignment explanation
Indices: 84324018--84324180 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
84324008 GAGATGTATC
84324018 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84324083 AGGACA
66 AGGACA
84324089 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84324153 AGGACA
66 AGGACA
84324159 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84324181 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84331700 original size:70 final size:71
Alignment explanation
Indices: 84331550--84331712 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
84331540 GAGATGTATC
84331550 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84331615 AGGACA
66 AGGACA
84331621 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84331685 AGGACA
66 AGGACA
84331691 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84331713 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84334936 original size:42 final size:43
Alignment explanation
Indices: 84334828--84334936 Score: 127
Period size: 41 Copynumber: 2.6 Consensus size: 43
84334818 TACCGTATCA
* *
84334828 ATGCCATATCTCAGATATGGTCTTA-CATGAAATACCATATCG
1 ATGCCATATCCCAGATATGGTCTTATCATGAAATACCATACCG
* * * *
84334870 ACGCCATGT-CCTGAAATGGTCTTATCA-GAAAT-CACATACCG
1 ATGCCATATCCCAGATATGGTCTTATCATGAAATAC-CATACCG
84334911 ATGCCATATCCCAGATATGGTCTTAT
1 ATGCCATATCCCAGATATGGTCTTAT
84334937 TCGGAATCTC
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
40 1 0.02
41 30 0.56
42 23 0.43
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCATATCCCAGATATGGTCTTATCATGAAATACCATACCG
Found at i:84343475 original size:46 final size:46
Alignment explanation
Indices: 84343408--84343673 Score: 188
Period size: 46 Copynumber: 5.7 Consensus size: 46
84343398 TGTAACCCGC
** * * *
84343408 CCATAAGCGAACTTAGACTCAATTCAACGAGCTCGGGCATTCTCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
*
84343454 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCACAT
* * ** * * * *
84343504 --TTCA-CGAACTCAAACTCAAGTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
*
84343547 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCACAT
* * * * *
84343597 -C-TCA-CGAACTCGGACTCACCTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
* *
84343640 CCATGAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
84343674 AGATGCTCAA
Statistics
Matches: 169, Mismatches: 33, Indels: 36
0.71 0.14 0.15
Matches are distributed among these distances:
42 4 0.02
43 6 0.04
44 3 0.02
45 4 0.02
46 81 0.48
47 52 0.31
48 5 0.03
49 3 0.02
50 7 0.04
51 4 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
Found at i:84343521 original size:47 final size:46
Alignment explanation
Indices: 84343462--84343630 Score: 189
Period size: 47 Copynumber: 3.6 Consensus size: 46
84343452 ATCCATAAGT
84343462 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACA-TTCAC
** * * * * * * * *
84343509 GAACTCAAACTCAAGTCAACGAGTTCGGACG-TTCGCATCCA-TAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATTCA-C
84343555 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-TCAC
*
84343602 GAACTCGGACTCACCTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
84343631 CGTTCGCATC
Statistics
Matches: 96, Mismatches: 21, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 32 0.33
47 60 0.62
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTCAC
Found at i:84343548 original size:93 final size:93
Alignment explanation
Indices: 84343415--84343679 Score: 413
Period size: 93 Copynumber: 2.8 Consensus size: 93
84343405 CGCCCATAAG
* * * * * *
84343415 CGAACTTAGACTCAATTCAACGAGCTCGGGCATTCTCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
84343480 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
84343508 CGAACTCAAACTCAAGTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
84343573 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
84343601 CGAACTCGGACTCACCTCAACGAGTTCGGACGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
84343666 ACGAGTTCAGATGC
66 ACGAGTTCGGATGC
84343680 TCAAATATCT
Statistics
Matches: 158, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:84345820 original size:16 final size:15
Alignment explanation
Indices: 84345791--84345819 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
84345781 ATTGAGAAAC
84345791 CCAGAATAAAAAAAT
1 CCAGAATAAAAAAAT
84345806 CCAGAATAAAAAAA
1 CCAGAATAAAAAAA
84345820 ACCCAAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.14, G:0.07, T:0.10
Consensus pattern (15 bp):
CCAGAATAAAAAAAT
Found at i:84348887 original size:45 final size:46
Alignment explanation
Indices: 84348804--84349011 Score: 250
Period size: 45 Copynumber: 4.5 Consensus size: 46
84348794 ATAAACGAAA
*
84348804 TCGGACTCAACTCAACGA-TCTCGGGCGTTCGCATCCATAAGTGAAC
1 TCGGACTCAACTCAACGAGT-TCGGACGTTCGCATCCATAAGTGAAC
*
84348850 TCGGACTCAACTCAA-GAGCTCGGACGTTCGCATCCATAAGTGAAC
1 TCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAAC
* * * *
84348895 TCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT-C-TCA-CGAAC
1 TCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCATAAGTGAAC
*
84348942 TCGGACTCAACT-AACGAGTTCGGACGTTTGCATCCATAAGTGAAC
1 TCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAAC
84348987 TCGGACTCAACTCAACGAGTTCGGA
1 TCGGACTCAACTCAACGAGTTCGGA
84349012 TGCTCAAATA
Statistics
Matches: 140, Mismatches: 10, Indels: 24
0.80 0.06 0.14
Matches are distributed among these distances:
41 3 0.02
42 3 0.02
43 2 0.01
44 2 0.01
45 58 0.41
46 46 0.33
47 16 0.11
48 2 0.01
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (46 bp):
TCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAAC
Found at i:84348965 original size:92 final size:92
Alignment explanation
Indices: 84348846--84349014 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
84348836 ATCCATAAGT
*
84348846 GAACTCGGACTCAACTCAAGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
1 GAACTCGGACTCAACTCAAGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
84348911 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
84348938 GAACTCGGACTCAACT-AACGAGTTCGGACGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAA-GAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84349002 CGAGTTCGGATGC
65 CGAGTTCGGATGC
84349015 TCAAATATCG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 2 0.03
92 71 0.97
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAAGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84360237 original size:39 final size:39
Alignment explanation
Indices: 84360184--84360309 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
84360174 GGACTTTAGC
* * * * *
84360184 CCGGACATATTTCCAGTACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
84360223 CTGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
84360262 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
84360301 CCGGATATA
1 CCGGATATA
84360310 CATCACTAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:84363253 original size:6 final size:6
Alignment explanation
Indices: 84363244--84363316 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
84363234 AAACAAAATG
* * * *
84363244 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATT AGTATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
*
84363293 AGGTAA-C AGAATC AAAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
84363317 GTGAATGCAA
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
5 3 0.06
6 41 0.80
7 5 0.10
8 2 0.04
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:84363281 original size:31 final size:31
Alignment explanation
Indices: 84363235--84363316 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 31
84363225 CAGAACTAGA
* * *
84363235 AACAAAATGAGAATCAGAATCAGAATTAGGT
1 AACAGAATCAGAATCAGAATCAGAATCAGGT
* * *
84363266 GACAGAATCAGAATCAGAATTAGTATCAGGT
1 AACAGAATCAGAATCAGAATCAGAATCAGGT
*
84363297 AACAGAATCAAAATCAGAAT
1 AACAGAATCAGAATCAGAAT
84363317 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (31 bp):
AACAGAATCAGAATCAGAATCAGAATCAGGT
Found at i:84363498 original size:2 final size:2
Alignment explanation
Indices: 84363491--84363516 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
84363481 ACCAGAACAG
84363491 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
84363517 GTGGCGAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84363867 original size:27 final size:27
Alignment explanation
Indices: 84363837--84364327 Score: 610
Period size: 27 Copynumber: 18.2 Consensus size: 27
84363827 AACACCCTAG
* * * *
84363837 GGGTAAAATATTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
84363864 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
84363891 GGGTAAAACAGTAATTTTGAAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
84363918 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
84363945 GGGTAAAATAGTAATTCTGTCAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
84363972 GGGTAAAACGGTAATTCTATAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
84363999 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
84364026 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
84364053 GGGTAAAATAGTAATTCTATAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * * *
84364080 GGGTAAAATAGTAATTCTATCAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
84364107 GGGTAAAACAGTAATTCTATCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
84364134 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
84364161 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * * *
84364188 GGGTAGAATAGTAATTCTATAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
84364215 GGGTAAAA-AGATAATTCTGTAAATCGA
1 GGGTAAAACAG-TAATTCTGTAAATCGA
*
84364242 GGGTAAAAC-GATAATTTTGTAAAAT-GA
1 GGGTAAAACAG-TAATTCTGT-AAATCGA
84364269 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
84364296 GGGTAAAACAGTAATTTTGTAATTCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
84364323 GGGTA
1 GGGTA
84364328 CTTTGATAAT
Statistics
Matches: 406, Mismatches: 53, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
26 6 0.01
27 395 0.97
28 5 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTGTAAATCGA
Found at i:84364352 original size:54 final size:54
Alignment explanation
Indices: 84364294--84364398 Score: 133
Period size: 54 Copynumber: 1.9 Consensus size: 54
84364284 TCTGTAAATC
**
84364294 GAGGGTAAAACAGTAATTTT-GTAATTCGAGGGTACTTT-GATAATTTTACAAGTT
1 GAGGGTAAAACAGTAATTTTACAAATT-GAGGGTA-TTTCGATAATTTTACAAGTT
***
84364348 GAGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAA
1 GAGGGTAAAACAGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAA
84364399 ATCGAGGATA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
53 3 0.07
54 37 0.84
55 4 0.09
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (54 bp):
GAGGGTAAAACAGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAGTT
Found at i:84364379 original size:81 final size:81
Alignment explanation
Indices: 84363848--84364381 Score: 374
Period size: 81 Copynumber: 6.6 Consensus size: 81
84363838 GGTAAAATAT
* * * * * *
84363848 TAATTTTA-TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTTTGA
1 TAATTTTACAAAAT-GAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAA-AGATAATTCTGT
*
84363911 AAATCGAGGGTAAAA-TA
64 AAATCGAGGGTAAAACGA
** * * * * ** * * *
84363928 GTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTGTCAATCAAGGGTAAAACGGTAATTCTATA
1 -TAATTTTACAAAATGAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAAGATAATTCTGTA
*
84363993 AATTGAGGGTAAAAC-A
65 AATCGAGGGTAAAACGA
** * * * *
84364009 GTAATTTT-GTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG-TAATTCTA
1 -TAATTTTACAAAAT-GAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAA-AGATAATTCTG
* *
84364072 TAAATTGAGGGTAAAA-TA
63 TAAATCGAGGGTAAAACGA
* * * * *
84364090 GTAATTCTATC--AATCAAGGGTAAAACAGTAATTCTATCAATCGAGGGTAAAATAG-TAATTTT
1 -TAATTTTA-CAAAAT-GAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAA-AGATAATTCT
84364152 GTAAATCGAGGGTAAAAC-A
62 GTAAATCGAGGGTAAAACGA
* ** * *
84364171 GTAATTCT-GTAAATCGAGGGTAGAATAGTAATTCTATAAATTGAGGGTAAAAAGATAATTCTGT
1 -TAATTTTACAAAAT-GAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAAGATAATTCTGT
84364235 AAATCGAGGGTAAAACGA
64 AAATCGAGGGTAAAACGA
** * * *
84364253 TAATTTTGTAAAATGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTTTGTA
1 TAATTTTACAAAATGAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAA-AGATAATTCTGTA
* ****
84364317 ATTCGAGGGTACTTTGA
65 AATCGAGGGTAAAACGA
** *** * *
84364334 TAATTTTACAAGTTGAGGGTATTTCAGTAATTTTACAAATTGAGGGTA
1 TAATTTTACAAAATGAGGGTAAAACAGTAATTCTATAAATTGAGGGTA
84364382 TTTCGATAAT
Statistics
Matches: 378, Mismatches: 60, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
80 6 0.02
81 361 0.96
82 11 0.03
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (81 bp):
TAATTTTACAAAATGAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAAGATAATTCTGTAA
ATCGAGGGTAAAACGA
Found at i:84364411 original size:54 final size:55
Alignment explanation
Indices: 84364316--84364452 Score: 163
Period size: 54 Copynumber: 2.5 Consensus size: 55
84364306 GTAATTTTGT
* * *
84364316 AATTCGAGGGTACTTTGATAATTTTACAAGTTGAGGGTATTTCAGTAATTTTACA
1 AATTCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCAGTAATTTTACA
** *
84364371 AATT-GAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGGGTAATTTTATA
1 AATTCGAGGGTACTTT-GATAATTTTACAAATCGAGGATATTTCAGTAATTTTACA
* * *
84364425 AA-CCGGGGGTACTTTGGTAATTTTACAA
1 AATTCGAGGGTACTTTGATAATTTTACAA
84364453 CTAGGGGTAT
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
53 3 0.04
54 60 0.86
55 7 0.10
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (55 bp):
AATTCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCAGTAATTTTACA
Found at i:84364459 original size:27 final size:27
Alignment explanation
Indices: 84364319--84364452 Score: 137
Period size: 27 Copynumber: 5.0 Consensus size: 27
84364309 ATTTTGTAAT
* *
84364319 TCGAGGGTACTTT-GATAATTTTACAAG
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
* *
84364346 TTGAGGGTATTTCAGTAATTTTACAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* *
84364373 TTGAGGGTATTTCGATAATTTTACAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* * *
84364400 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* *
84364427 CCGGGGGTACTTT-GGTAATTTTACAA
1 TCGAGGGTA-TTTCGGTAATTTTACAA
84364453 CTAGGGGTAT
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
26 3 0.03
27 84 0.93
28 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
TCGAGGGTATTTCGGTAATTTTACAAA
Found at i:84366445 original size:6 final size:6
Alignment explanation
Indices: 84366436--84366514 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
84366426 AAACAAAATG
* * *
84366436 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
* *
84366485 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
84366515 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 3 0.05
6 47 0.82
7 5 0.09
8 2 0.04
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:84366500 original size:37 final size:37
Alignment explanation
Indices: 84366424--84366514 Score: 119
Period size: 37 Copynumber: 2.5 Consensus size: 37
84366414 TATCAGAACT
* * * *
84366424 AGAAACAAAATGAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
84366461 AGAATCAGAATCAGAATCAGAATTAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
84366498 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
84366515 GTGAATGCAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.51, C:0.12, G:0.19, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:84366680 original size:27 final size:26
Alignment explanation
Indices: 84366632--84366691 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
84366622 GCGAGGCTGC
*
84366632 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
84366659 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
84366685 CAGATAT
1 CAGATAT
84366692 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:84366695 original size:2 final size:2
Alignment explanation
Indices: 84366688--84366725 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
84366678 ACCAGAACAG
84366688 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84366726 GTGGCGAAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84367076 original size:27 final size:27
Alignment explanation
Indices: 84367046--84367509 Score: 570
Period size: 27 Copynumber: 17.2 Consensus size: 27
84367036 AAGACCCTAG
** *
84367046 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
84367073 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
84367100 GTGTAAAATAATAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
84367127 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
84367154 GGGTAAAATAATAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
** *
84367181 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
**
84367208 GGGTAAAACAGTAATCCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
84367235 GGGTAAAACAGTAATTTTGCAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
84367262 GGGTAAAATAATAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
84367289 GGGTAAAATAGTAATTTTTTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
**
84367316 TTGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
84367343 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
84367370 GGGTAAAATAGTAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
84367397 GGGTAAAACGGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
**
84367424 GGGTAAAAC-GATAATTTTGTAAATTAA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
*
84367451 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
84367478 GGGTAAAACAGAAATTTTGTAATTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
84367505 GGGTA
1 GGGTA
84367510 CTTTGATAAT
Statistics
Matches: 385, Mismatches: 50, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 383 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:84367520 original size:27 final size:27
Alignment explanation
Indices: 84367501--84367655 Score: 138
Period size: 27 Copynumber: 5.8 Consensus size: 27
84367491 ATTTTGTAAT
*
84367501 TCGAGGGTACTTTGA-TAATTTTACAAG
1 TCGAGGGTA-TTTCAGTAATTTTACAAG
84367528 TCGAGGGTATTTCAGTAATTTTACAA-
1 TCGAGGGTATTTCAGTAATTTTACAAG
* *
84367554 ACTGAGGGTATTTCAGTAATTTTACAAA
1 TC-GAGGGTATTTCAGTAATTTTACAAG
* ** * *
84367582 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTTCAGTAATTTTACAAG
* * * *
84367609 CCGGGGGTACTTT-GGTAATTTTACAAC
1 TCGAGGGTA-TTTCAGTAATTTTACAAG
*
84367636 T-GGGGGTATTTCAGTAATTT
1 TCGAGGGTATTTCAGTAATTT
84367656 GGTAAAGTAA
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
25 3 0.03
26 19 0.17
27 83 0.76
28 4 0.04
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (27 bp):
TCGAGGGTATTTCAGTAATTTTACAAG
Found at i:84367548 original size:54 final size:53
Alignment explanation
Indices: 84367502--84367655 Score: 177
Period size: 54 Copynumber: 2.9 Consensus size: 53
84367492 TTTTGTAATT
* *
84367502 CGAGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAA
1 CGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAA
* * **
84367555 CTGAGGGTA-TTTCAGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAA
1 C-GAGGGTACTTTGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAA
* * * *
84367609 CCGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 -CGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTT
84367656 GGTAAAGTAA
Statistics
Matches: 83, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
53 20 0.24
54 59 0.71
55 4 0.05
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (53 bp):
CGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAA
Found at i:84367575 original size:81 final size:80
Alignment explanation
Indices: 84367490--84367661 Score: 195
Period size: 81 Copynumber: 2.1 Consensus size: 80
84367480 GTAAAACAGA
* * **
84367490 AATTTTGTAATTCGAGGGTACTTT-GATAATTTTACAAGTCGAGGGTA-TTTCAGTAATTTTACA
1 AATTTTGTAAATCGAGGATA-TTTGGATAATTTTACAAACCGAGGGTACTTT-AGTAATTTTAC-
84367553 AACTGAGGGTATTTCAGT
63 AACTGAGGGTATTTCAGT
** * * * *
84367571 AATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAAC
1 AATTTTGTAAATCGAGGATATTTGGATAATTTTACAAACCGAGGGTACTTTAGTAATTTTACAAC
*
84367636 TGGGGGTATTTCAGT
66 TGAGGGTATTTCAGT
*
84367651 AATTTGGTAAA
1 AATTTTGTAAA
84367662 GTAAAGTATT
Statistics
Matches: 75, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
80 28 0.37
81 44 0.59
82 3 0.04
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.38
Consensus pattern (80 bp):
AATTTTGTAAATCGAGGATATTTGGATAATTTTACAAACCGAGGGTACTTTAGTAATTTTACAAC
TGAGGGTATTTCAGT
Found at i:84372652 original size:2 final size:2
Alignment explanation
Indices: 84372645--84372674 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
84372635 CCACCAGAAC
84372645 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84372675 GTGTGTGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84374595 original size:30 final size:30
Alignment explanation
Indices: 84374549--84374608 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
84374539 TTCCCGAGCC
84374549 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
84374579 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
84374609 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:84376390 original size:29 final size:29
Alignment explanation
Indices: 84376358--84376487 Score: 165
Period size: 29 Copynumber: 4.5 Consensus size: 29
84376348 ATAGTGAATC
*
84376358 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
*
84376387 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
* *
84376416 CGCACACTTAGTGCTATAGA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * *
84376444 CGCACACTTAGTGCTATACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAACT
84376474 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84376488 CAATCTTGTC
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.23
29 49 0.54
30 17 0.19
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Done.