Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 271 of 433
Found at i:84381530 original size:29 final size:29
Alignment explanation
Indices: 84381497--84381570 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
84381487 GTGACGAGAT
84381497 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
84381526 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
84381555 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84381571 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:84381586 original size:29 final size:29
Alignment explanation
Indices: 84381554--84381629 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
84381544 CTGGAAATAT
* *
84381554 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
84381583 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
84381612 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
84381630 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:84381597 original size:58 final size:58
Alignment explanation
Indices: 84381497--84381629 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
84381487 GTGACGAGAT
* * * * * *
84381497 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
84381555 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
84381613 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
84381630 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:84389404 original size:29 final size:30
Alignment explanation
Indices: 84389371--84389445 Score: 134
Period size: 30 Copynumber: 2.5 Consensus size: 30
84389361 GTGACGAGAT
84389371 TGGCACTAAGTGTGCGTGC-TGGAAATATA
1 TGGCACTAAGTGTGCGTGCTTGGAAATATA
*
84389400 TGGCACTAAGTGTGCATGCTTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTTGGAAATATA
84389430 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84389446 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
29 18 0.42
30 25 0.58
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.28
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGTGCTTGGAAATATA
Found at i:84389463 original size:59 final size:58
Alignment explanation
Indices: 84389371--84389504 Score: 135
Period size: 59 Copynumber: 2.3 Consensus size: 58
84389361 GTGACGAGAT
* * * * * *
84389371 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTT--AAATCACA
* * ** * *
84389430 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTTAAATCACA
84389488 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
84389505 AATCGAGTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
57 4 0.06
58 18 0.29
59 40 0.65
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTTAAATCACA
Found at i:84396397 original size:40 final size:40
Alignment explanation
Indices: 84396293--84396456 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
84396283 CGGAATATAA
*
84396293 CCGGATATAATCA-T-GCACAAATGCCTTCGGGTCTTAG-
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
* * *
84396330 CCGGATAGAATGACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCAC-AATTGCCTTCGGGTCTTAGC
** *
84396370 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
** * * *
84396410 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
84396449 CCGGATAT
1 CCGGATAT
84396457 CATTCAATTT
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
37 11 0.10
38 1 0.01
39 35 0.33
40 59 0.56
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:84404320 original size:40 final size:40
Alignment explanation
Indices: 84404275--84404441 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
84404265 CGGAATATAA
84404275 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
84404315 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
84404355 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
84404395 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
84404434 CCGGATAT
1 CCGGATAT
84404442 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:84407302 original size:36 final size:36
Alignment explanation
Indices: 84407259--84407330 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
84407249 GTGTGTTTAA
* *
84407259 AGGGATTGGA-TCGTGTGAGCATATGGTGTGTTTTGG
1 AGGGATT-GACTCGTATGAGCATATGGTGTATTTTGG
* *
84407295 AGGGATTGACTTGTATGAGCATTTGGTGTATTTTGG
1 AGGGATTGACTCGTATGAGCATATGGTGTATTTTGG
84407331 TTGGACCGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 2 0.06
36 29 0.94
ACGTcount: A:0.18, C:0.06, G:0.38, T:0.39
Consensus pattern (36 bp):
AGGGATTGACTCGTATGAGCATATGGTGTATTTTGG
Found at i:84408928 original size:29 final size:29
Alignment explanation
Indices: 84408895--84408994 Score: 107
Period size: 29 Copynumber: 3.5 Consensus size: 29
84408885 GTGACGAGAT
84408895 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
84408924 TGGCACT--GTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
84408951 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
84408980 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
84408995 GGGTTTAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
27 26 0.43
29 33 0.55
30 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:84408937 original size:27 final size:27
Alignment explanation
Indices: 84408895--84408958 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 27
84408885 GTGACGAGAT
84408895 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACT--GTGTGCATGCTGGAAATATA
84408924 TGGCACTGTGTGCATGCTGGAAATATA
1 TGGCACTGTGTGCATGCTGGAAATATA
*
84408951 CGGCACTG
1 TGGCACTG
84408959 GGTGTGCGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 27 0.79
29 7 0.21
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (27 bp):
TGGCACTGTGTGCATGCTGGAAATATA
Found at i:84409051 original size:28 final size:28
Alignment explanation
Indices: 84408982--84409082 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84408972 GAAGGGTATG
* * * *
84408982 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
84409012 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
84409040 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
84409069 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
84409083 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:84416711 original size:29 final size:29
Alignment explanation
Indices: 84416678--84416741 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
84416668 TGACGAGATT
84416678 GGCACTAAGTGTGCATGCTGGAAATATAC
1 GGCACTAAGTGTGCATGCTGGAAATATAC
**
84416707 GGCACTGGGTGTGCATGCTGGAAATATAC
1 GGCACTAAGTGTGCATGCTGGAAATATAC
84416736 GGCACT
1 GGCACT
84416742 GGGTGTGCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAC
Found at i:84416742 original size:29 final size:29
Alignment explanation
Indices: 84416686--84416749 Score: 128
Period size: 29 Copynumber: 2.2 Consensus size: 29
84416676 TTGGCACTAA
84416686 GTGTGCATGCTGGAAATATACGGCACTGG
1 GTGTGCATGCTGGAAATATACGGCACTGG
84416715 GTGTGCATGCTGGAAATATACGGCACTGG
1 GTGTGCATGCTGGAAATATACGGCACTGG
84416744 GTGTGC
1 GTGTGC
84416750 GAGCTCGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.22, C:0.17, G:0.36, T:0.25
Consensus pattern (29 bp):
GTGTGCATGCTGGAAATATACGGCACTGG
Found at i:84416835 original size:28 final size:28
Alignment explanation
Indices: 84416766--84416866 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84416756 GAAGGGTATG
* * * *
84416766 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
84416796 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
84416824 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
84416853 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
84416867 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:84422195 original size:43 final size:41
Alignment explanation
Indices: 84422148--84422249 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 41
84422138 TCCCGGATGT
* * *
84422148 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACATGAAATTCAAT-T-GAGGCCTCTGTCCCAGACAC
* *
84422191 GGTCTTACACGAAAATCTCAATTGAGGCCTGTGTCCCAGACAC
1 GGTCTTACATG-AAAT-TCAATTGAGGCCTCTGTCCCAGACAC
84422234 GGTCTTACATGAAATT
1 GGTCTTACATGAAATT
84422250 AGATACGACG
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
41 1 0.02
42 4 0.08
43 37 0.73
44 4 0.08
45 5 0.10
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (41 bp):
GGTCTTACATGAAATTCAATTGAGGCCTCTGTCCCAGACAC
Found at i:84422317 original size:43 final size:42
Alignment explanation
Indices: 84422168--84422330 Score: 152
Period size: 43 Copynumber: 3.8 Consensus size: 42
84422158 GTAATTCAAT
* * * *
84422168 ATCGATGCCTCTGTCCCAGACAGGGTCTTACACGAAAATCTCA
1 ATCGAGGCCTATGTCCCAAACACGGTCTTACACG-AAATCTCA
* * * *
84422211 ATTGAGGCCTGTGTCCCAGACACGGTCTTACATGAAAT-T-A
1 ATCGAGGCCTATGTCCCAAACACGGTCTTACACGAAATCTCA
* * * *
84422251 GATACGACG-CTGATGTTCCAAACATGGTCTTATACGTAAATCTCA
1 -AT-CGAGGCCT-ATGTCCCAAACACGGTCTTACACG-AAATCTCA
84422296 ATCGAGGCCTATGTCCCAAACACGGTCTTACACGA
1 ATCGAGGCCTATGTCCCAAACACGGTCTTACACGA
84422331 TGTCTCAGAC
Statistics
Matches: 96, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
40 1 0.01
41 5 0.05
42 26 0.27
43 58 0.60
44 5 0.05
45 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (42 bp):
ATCGAGGCCTATGTCCCAAACACGGTCTTACACGAAATCTCA
Found at i:84428660 original size:39 final size:39
Alignment explanation
Indices: 84428616--84428741 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
84428606 TTCAGTGCTG
* *
84428616 TATATCCGGACATAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
84428655 TATATCCGGACTTAGGGTCCGCAAGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
84428694 TATATCCGAACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
84428733 TATGTCCGG
1 TATATCCGG
84428742 GCTAAAGTCC
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:84428755 original size:78 final size:78
Alignment explanation
Indices: 84428616--84428777 Score: 175
Period size: 78 Copynumber: 2.1 Consensus size: 78
84428606 TTCAGTGCTG
* * * * * **
84428616 TATATCCGGACATAGGGTCCGTAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAAGC
1 TATATCCGAACATAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
*
84428681 TAT-GTGCTGGAAT
66 T-TCGAGCTGGAAT
* * * *
84428694 TATATCCGAACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGG
1 TATATCCGAACATAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAAG
*
84428758 CTTCGAGCTGGTAT
65 CTTCGAGCTGGAAT
84428772 TATATC
1 TATATC
84428778 GGGTTTAAAT
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
77 5 0.07
78 64 0.93
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (78 bp):
TATATCCGAACATAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
TTCGAGCTGGAAT
Found at i:84435161 original size:38 final size:37
Alignment explanation
Indices: 84435119--84435197 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 37
84435109 AATTTTTCAT
*
84435119 AATATGTTTTTGGGCTGAATTGAATAATGTGATGATTA
1 AATATGTTTTTGGGCCGAATTGAATAATGTGAT-ATTA
84435157 AATATGTTTTTGGGCCGAATTGAATAATGTGATATTA
1 AATATGTTTTTGGGCCGAATTGAATAATGTGATATTA
84435194 AATA
1 AATA
84435198 AGTTAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 8 0.20
38 32 0.80
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.41
Consensus pattern (37 bp):
AATATGTTTTTGGGCCGAATTGAATAATGTGATATTA
Found at i:84438846 original size:40 final size:39
Alignment explanation
Indices: 84438686--84438848 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
84438676 TGTGTATGAA
*
84438686 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
84438725 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
84438764 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
84438803 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
84438843 TGTGCG
1 TGTGCG
84438849 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:84438864 original size:40 final size:39
Alignment explanation
Indices: 84438686--84438879 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
84438676 TGTGTATGAA
* *
84438686 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
84438725 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
84438764 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
84438803 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
84438843 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
84438880 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:84446662 original size:39 final size:39
Alignment explanation
Indices: 84446608--84446770 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
84446598 TGTGTATGAA
*
84446608 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
84446647 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
84446686 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
84446725 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
84446765 TGTGCG
1 TGTGCG
84446771 GTTACCATAA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:84446796 original size:39 final size:39
Alignment explanation
Indices: 84446608--84446800 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
84446598 TGTGTATGAA
* *
84446608 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
84446647 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
84446686 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
84446725 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
** * *
84446765 TGTGCG-GTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
84446801 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 121 0.88
40 17 0.12
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:84446821 original size:79 final size:78
Alignment explanation
Indices: 84446625--84446838 Score: 218
Period size: 78 Copynumber: 2.7 Consensus size: 78
84446615 ATTGTGATAT
** * *
84446625 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATGGTG
** *
84446690 CGAGCTATGATAT
66 CGAGCTACCATAA
** * * *
84446703 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATGGT
*
84446768 GCG-GTTACCATAA
65 GCGAGCTACCATAA
* ** *
84446781 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
84446839 TATGTGATTT
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
77 1 0.01
78 76 0.64
79 40 0.34
80 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATGGTG
CGAGCTACCATAA
Found at i:84448276 original size:43 final size:44
Alignment explanation
Indices: 84448227--84448385 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 44
84448217 GATTACCGAG
*
84448227 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
84448271 -TGTGATTACGTGTAAAACCATGTTTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * * * *
84448313 ATATGATTTCGTTTAAGACCTTGTCTGGGGCAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
84448356 ATGTGATAACATGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
84448386 TATTACATTG
Statistics
Matches: 93, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
42 1 0.01
43 92 0.99
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:84453232 original size:17 final size:16
Alignment explanation
Indices: 84453210--84453247 Score: 67
Period size: 17 Copynumber: 2.3 Consensus size: 16
84453200 AAATACGCTC
84453210 TCTCTTTGTTCTCTTAT
1 TCTCTTTGTTCT-TTAT
84453227 TCTCTTTGTTCTTTAT
1 TCTCTTTGTTCTTTAT
84453243 TCTCT
1 TCTCT
84453248 GTCTTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.05, C:0.24, G:0.05, T:0.66
Consensus pattern (16 bp):
TCTCTTTGTTCTTTAT
Found at i:84456659 original size:39 final size:39
Alignment explanation
Indices: 84456605--84456687 Score: 132
Period size: 39 Copynumber: 2.1 Consensus size: 39
84456595 TTCGTGCTAA
*
84456605 GACATTGGGTGATTTGTGCTAGTGTAAGACCATGTC-AGG
1 GACATTGGGTGATTTGTGCTAGTATAAGACCATGTCTA-G
*
84456644 GACATTGGGTGATTTGTGCTATTATAAGACCATGTCTAG
1 GACATTGGGTGATTTGTGCTAGTATAAGACCATGTCTAG
84456683 GACAT
1 GACAT
84456688 GGCATCGACA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 40 0.98
40 1 0.02
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (39 bp):
GACATTGGGTGATTTGTGCTAGTATAAGACCATGTCTAG
Found at i:84461438 original size:31 final size:31
Alignment explanation
Indices: 84461397--84461482 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
84461387 TCAATCTCAG
*
84461397 CATAT-ACTGGGCCGATGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
84461427 CATATCACTGGGCCAAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
84461458 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
84461483 TGTAACAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:84461728 original size:25 final size:25
Alignment explanation
Indices: 84461700--84461795 Score: 129
Period size: 25 Copynumber: 3.8 Consensus size: 25
84461690 CTCTTTTAAT
* * *
84461700 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGGTA
*
84461725 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTAGGGC-AAAGCCCTTTTCGGTA
84461751 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
* *
84461776 AAATAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
84461796 GTACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
25 43 0.66
26 22 0.34
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGGTA
Found at i:84461785 original size:51 final size:50
Alignment explanation
Indices: 84461700--84461795 Score: 129
Period size: 51 Copynumber: 1.9 Consensus size: 50
84461690 CTCTTTTAAT
* * * *
84461700 AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATAAAATAGGGC-AAAGCCCTTTTCGGTA
* *
84461751 AACTAGGGCAAAGCCCTTTTCGGTAAAATAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTTCGATAAAATAGGGCAAAGCCCTTTT
84461796 GTACTTCCTC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
50 10 0.26
51 29 0.74
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (50 bp):
AACTAGGGCAAAGCCCTTTTCGATAAAATAGGGCAAAGCCCTTTTCGGTA
Found at i:84463710 original size:2 final size:2
Alignment explanation
Indices: 84463703--84463745 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
84463693 TCAAGTGTTC
*
84463703 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84463745 A
1 A
84463746 CTTTCTCATC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:84470274 original size:27 final size:27
Alignment explanation
Indices: 84470244--84470326 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
84470234 CTAATGGCCG
84470244 ATGTGATGAATGTGAAAATGTGTATAT
1 ATGTGATGAATGTGAAAATGTGTATAT
* ***
84470271 ATGTGAT-AA-G-GACTAATG-G--CCG
1 ATGTGATGAATGTGA-AAATGTGTATAT
*
84470293 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAATGTGTATAT
84470320 ATGTGAT
1 ATGTGAT
84470327 AGGGCCAAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 14
0.63 0.14 0.22
Matches are distributed among these distances:
22 7 0.17
23 2 0.05
24 7 0.17
25 8 0.20
26 2 0.05
27 14 0.35
ACGTcount: A:0.34, C:0.04, G:0.29, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAATGTGTATAT
Found at i:84470277 original size:49 final size:49
Alignment explanation
Indices: 84470217--84470762 Score: 912
Period size: 49 Copynumber: 11.1 Consensus size: 49
84470207 GTATGAGATA
* *
84470217 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
84470266 TATATATGTGATAAGGACTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* * *
84470315 TATATATGTGATAGGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
84470364 TATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* * *
84470413 AATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
84470462 AATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
84470511 AATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
84470560 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
84470609 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
84470658 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
84470707 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
84470756 TATATAT
1 TATATAT
84470763 ATGTGGTAAA
Statistics
Matches: 484, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 484 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
Found at i:84470886 original size:37 final size:36
Alignment explanation
Indices: 84470831--84470917 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
84470821 AACTTAGAAA
84470831 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
84470869 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
84470906 TATGTCCGGGTA
1 TATGTCCGGGTA
84470918 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:84473227 original size:55 final size:55
Alignment explanation
Indices: 84473143--84473254 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
84473133 TCTTGTAATA
84473143 TAGTTTTTTACATAATGGTGTAGATAAATGTACTTACACTAAATTCACTGATAGG
1 TAGTTTTTTACATAATGGTGTAGATAAATGTACTTACACTAAATTCACTGATAGG
*
84473198 TAGTTTTTTACATAATGGTGTAGATAAATGTACTTACACTAAATTCGCTGATAGG
1 TAGTTTTTTACATAATGGTGTAGATAAATGTACTTACACTAAATTCACTGATAGG
84473253 TA
1 TA
84473255 CAGTGTAATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (55 bp):
TAGTTTTTTACATAATGGTGTAGATAAATGTACTTACACTAAATTCACTGATAGG
Found at i:84475204 original size:168 final size:168
Alignment explanation
Indices: 84474926--84475264 Score: 651
Period size: 168 Copynumber: 2.0 Consensus size: 168
84474916 AAACAATCCA
84474926 ATTTCAAAAATTAGAGTAAGAGTTAGGGAATTCCTCGATTTTGCTAATTAAAGGAAATTCAAAAA
1 ATTTCAAAAATTAGAGTAAGAGTTAGGGAATTCCTCGATTTTGCTAATTAAAGGAAATTCAAAAA
84474991 GCTTCGTTGTATCCCGAGAGGCATTTGTCTTAACCCTCTAGCAATTTTGTATTGGGGCAAATAGT
66 GCTTCGTTGTATCCCGAGAGGCATTTGTCTTAACCCTCTAGCAATTTTGTATTGGGGCAAATAGT
84475056 TCTCTTTGGAAAACGTCACACGCACCTTGAAGTCTACT
131 TCTCTTTGGAAAACGTCACACGCACCTTGAAGTCTACT
*
84475094 ATTTCAAAAATTAGAGTAAGAGTTAGGGAATTCCTCGATTTTGCTAATTAAAGGATATTCAAAAA
1 ATTTCAAAAATTAGAGTAAGAGTTAGGGAATTCCTCGATTTTGCTAATTAAAGGAAATTCAAAAA
84475159 GCTTCGTTGTATCCCGAGAGGCATTTGTCTTAACCCTCTAGCAATTTTGTATTGGGGCAAATAGT
66 GCTTCGTTGTATCCCGAGAGGCATTTGTCTTAACCCTCTAGCAATTTTGTATTGGGGCAAATAGT
* *
84475224 TCTCTTTGGAAAACGTCACCCGCACCTTGACGTCTACT
131 TCTCTTTGGAAAACGTCACACGCACCTTGAAGTCTACT
84475262 ATT
1 ATT
84475265 AAATTCTATA
Statistics
Matches: 168, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
168 168 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (168 bp):
ATTTCAAAAATTAGAGTAAGAGTTAGGGAATTCCTCGATTTTGCTAATTAAAGGAAATTCAAAAA
GCTTCGTTGTATCCCGAGAGGCATTTGTCTTAACCCTCTAGCAATTTTGTATTGGGGCAAATAGT
TCTCTTTGGAAAACGTCACACGCACCTTGAAGTCTACT
Found at i:84479970 original size:25 final size:24
Alignment explanation
Indices: 84479799--84479969 Score: 144
Period size: 25 Copynumber: 7.0 Consensus size: 24
84479789 ACAAGCTATG
* * *
84479799 AATCGGTATGCTCTCACGAGTTGCA
1 AATCGGTAAGCTCTTACGAGCTG-A
*
84479824 AATCGGTAAGCTCCTACGAGCTGA
1 AATCGGTAAGCTCTTACGAGCTGA
* **
84479848 GAATCAGTAAGCTCTTACGAGCTCC
1 -AATCGGTAAGCTCTTACGAGCTGA
** * *
84479873 AATTTGTAAGTTCTTACGAGCTGC
1 AATCGGTAAGCTCTTACGAGCTGA
*
84479897 AATCGGTAAGCTCTTACGAGTTGA
1 AATCGGTAAGCTCTTACGAGCTGA
* * * *
84479921 GAATTGGTATGCTCTCATGAGCTGTA
1 -AATCGGTAAGCTCTTACGAGCTG-A
* *
84479947 AATTGGTAAGCTCATACGAGCTG
1 AATCGGTAAGCTCTTACGAGCTG
84479970 TGGTGTGTTC
Statistics
Matches: 117, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
24 40 0.34
25 76 0.65
26 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (24 bp):
AATCGGTAAGCTCTTACGAGCTGA
Found at i:84482182 original size:40 final size:40
Alignment explanation
Indices: 84482113--84482292 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
84482103 GAGTATAACT
* * * *
84482113 AGGGGCACAGAA-TGCAACCAGGGGTACCGAAGTAAAAAC
1 AGGGGCACATAAGTGCAATCAAGGGTACCGAAGTACAAAC
** * *
84482152 AGGGGCACATAAGCACAATCAAGGGTACCGAACTACAAAT
1 AGGGGCACATAAGTGCAATCAAGGGTACCGAAGTACAAAC
* *
84482192 AGGGGCACGTAAGTGCAATCAAGGGTACCGAAATACAAAC
1 AGGGGCACATAAGTGCAATCAAGGGTACCGAAGTACAAAC
* *
84482232 AAGGGCACATAAGTGCAATCAGGGGTACCGAAGTACAAAC
1 AGGGGCACATAAGTGCAATCAAGGGTACCGAAGTACAAAC
84482272 AGGGGCACATAAGTGCAATCA
1 AGGGGCACATAAGTGCAATCA
84482293 TTCAATAATT
Statistics
Matches: 122, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
39 11 0.09
40 111 0.91
ACGTcount: A:0.41, C:0.21, G:0.27, T:0.12
Consensus pattern (40 bp):
AGGGGCACATAAGTGCAATCAAGGGTACCGAAGTACAAAC
Found at i:84482274 original size:20 final size:20
Alignment explanation
Indices: 84482131--84482276 Score: 96
Period size: 20 Copynumber: 7.3 Consensus size: 20
84482121 AGAATGCAAC
*
84482131 CAGGGGTACCGAAGTAAAAA
1 CAGGGGTACCGAAGTACAAA
* ** * *
84482151 CAGGGGCACATAAGCACAAT
1 CAGGGGTACCGAAGTACAAA
* *
84482171 CAAGGGTACCGAACTACAAA
1 CAGGGGTACCGAAGTACAAA
* * * *
84482191 TAGGGGCA-CGTAAGTGCAAT
1 CAGGGGTACCG-AAGTACAAA
* *
84482211 CAAGGGTACCGAAATACAAA
1 CAGGGGTACCGAAGTACAAA
* * ** * *
84482231 CAAGGGCACATAAGTGCAAT
1 CAGGGGTACCGAAGTACAAA
84482251 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
84482271 CAGGGG
1 CAGGGG
84482277 CACATAAGTG
Statistics
Matches: 87, Mismatches: 37, Indels: 4
0.68 0.29 0.03
Matches are distributed among these distances:
19 2 0.02
20 83 0.95
21 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.28, T:0.12
Consensus pattern (20 bp):
CAGGGGTACCGAAGTACAAA
Found at i:84490896 original size:2 final size:2
Alignment explanation
Indices: 84490891--84490924 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
84490881 ATGATCACAC
84490891 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84490925 TATGAAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84492689 original size:49 final size:49
Alignment explanation
Indices: 84492547--84492689 Score: 120
Period size: 49 Copynumber: 3.0 Consensus size: 49
84492537 CTGGGCTATC
* *
84492547 ACATGACATTGGCATCGATTTGAGAACATCGTGTAAGACCATATA-TGGG
1 ACATGACATTGGCATTGATATGAGAACATCGTGTAAGACCATA-ACTGGG
* * * * * * **
84492596 -C-T---ATCGGCTTTGATATGTGTGATC-CCATGTAAGACCATGTCTGGG
1 ACATGACATTGGCATTGATA--TGAGAACATCGTGTAAGACCATAACTGGG
84492641 ACATGACATTGGCATTGATATGAGAACATCGTGTAAGACCATAACTGGG
1 ACATGACATTGGCATTGATATGAGAACATCGTGTAAGACCATAACTGGG
84492690 CTATCGGCTT
Statistics
Matches: 67, Mismatches: 18, Indels: 18
0.65 0.17 0.17
Matches are distributed among these distances:
44 9 0.13
45 16 0.24
46 6 0.09
47 2 0.03
48 6 0.09
49 17 0.25
50 11 0.16
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (49 bp):
ACATGACATTGGCATTGATATGAGAACATCGTGTAAGACCATAACTGGG
Found at i:84492708 original size:94 final size:94
Alignment explanation
Indices: 84492547--84492750 Score: 365
Period size: 94 Copynumber: 2.2 Consensus size: 94
84492537 CTGGGCTATC
*
84492547 ACATGACATTGGCATCGATTTGAGAACATCGTGTAAGACCATATATGGGCTATCGGCTTTGATAT
1 ACATGACATTGGCATCGATATGAGAACATCGTGTAAGACCATATATGGGCTATCGGCTTTGATAT
84492612 GTGTGATCCCATGTAAGACCATGTCTGGG
66 GTGTGATCCCATGTAAGACCATGTCTGGG
*
84492641 ACATGACATTGGCATTGATATGAGAACATCGTGTAAGACCATA-ACTGGGCTATCGGCTTTGATA
1 ACATGACATTGGCATCGATATGAGAACATCGTGTAAGACCATATA-TGGGCTATCGGCTTTGATA
84492705 TGTGTGATCCCATGTAAGACCATGTCTGGG
65 TGTGTGATCCCATGTAAGACCATGTCTGGG
*
84492735 ACATGGCATTGGCATC
1 ACATGACATTGGCATC
84492751 AATAGGTGGT
Statistics
Matches: 105, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
93 1 0.01
94 104 0.99
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (94 bp):
ACATGACATTGGCATCGATATGAGAACATCGTGTAAGACCATATATGGGCTATCGGCTTTGATAT
GTGTGATCCCATGTAAGACCATGTCTGGG
Found at i:84492734 original size:45 final size:45
Alignment explanation
Indices: 84492578--84492734 Score: 156
Period size: 45 Copynumber: 3.4 Consensus size: 45
84492568 GAGAACATCG
*
84492578 TGTAAGACCATATATGGGCTATCGGCTTTGATATGTGTGATCCCA
1 TGTAAGACCATATCTGGGCTATCGGCTTTGATATGTGTGATCCCA
* * * * * * *
84492623 TGTAAGACCATGTCTGGGACATGACATTGGCATTGATA--TGAGAACATCG
1 TGTAAGACCATATCTGGG-C-T---ATCGGCTTTGATATGTGTGATC-CCA
*
84492672 TGTAAGACCATAACTGGGCTATCGGCTTTGATATGTGTGATCCCA
1 TGTAAGACCATATCTGGGCTATCGGCTTTGATATGTGTGATCCCA
*
84492717 TGTAAGACCATGTCTGGG
1 TGTAAGACCATATCTGGG
84492735 ACATGGCATT
Statistics
Matches: 86, Mismatches: 18, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
44 11 0.13
45 33 0.38
46 6 0.07
47 2 0.02
48 6 0.07
49 17 0.20
50 11 0.13
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (45 bp):
TGTAAGACCATATCTGGGCTATCGGCTTTGATATGTGTGATCCCA
Found at i:84499509 original size:18 final size:18
Alignment explanation
Indices: 84499486--84499522 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
84499476 CTACCCTTTA
84499486 TTTGCATTTTTAATGTTC
1 TTTGCATTTTTAATGTTC
*
84499504 TTTGCATTTTTGATGTTC
1 TTTGCATTTTTAATGTTC
84499522 T
1 T
84499523 ACCTTAGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.14, C:0.11, G:0.14, T:0.62
Consensus pattern (18 bp):
TTTGCATTTTTAATGTTC
Found at i:84501924 original size:94 final size:94
Alignment explanation
Indices: 84501826--84501998 Score: 303
Period size: 94 Copynumber: 1.8 Consensus size: 94
84501816 ATCCTATGTG
* *
84501826 AGACCATAGCTGGGCTA-TCAGCTTTGATATGTGTGATCCCATGTAAGACCATGTTTGGGACATG
1 AGACCATAGCTGGGCTACT-AGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATG
84501890 GCATTGGCATCGATATGAGAACATCGTGTA
65 GCATTGGCATCGATATGAGAACATCGTGTA
84501920 AGACCATAGCTGGGCTACTAGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGG
1 AGACCATAGCTGGGCTACTAGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGG
*
84501985 TATTGGCATCGATA
66 CATTGGCATCGATA
84501999 AGTGGTCCTA
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
94 74 0.99
95 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (94 bp):
AGACCATAGCTGGGCTACTAGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGG
CATTGGCATCGATATGAGAACATCGTGTA
Found at i:84501978 original size:45 final size:45
Alignment explanation
Indices: 84501777--84501971 Score: 193
Period size: 45 Copynumber: 4.2 Consensus size: 45
84501767 GAGAACATCG
*
84501777 TGTAAGACCATAGCTGGGCTATCAGCTTCGATATGTGTGATCCTA
1 TGTAAGACCATAGCTGGGCTATCAGCTTCGATATGTGTGATCCCA
* *
84501822 TGTGAGACCATAGCTGGGCTATCAGCTTTGATATGTGTGATCCCA
1 TGTAAGACCATAGCTGGGCTATCAGCTTCGATATGTGTGATCCCA
* * * * * *
84501867 TGTAAGACCAT-GTTTGGGAC-ATGGCATTGGCATCGATA--TGAGAACATCG
1 TGTAAGACCATAG-CTGGG-CTAT--CA---GCTTCGATATGTGTGATC-CCA
84501916 TGTAAGACCATAGCTGGGCTA-CTAGCTTCGATATGTGTGATCCCA
1 TGTAAGACCATAGCTGGGCTATC-AGCTTCGATATGTGTGATCCCA
84501961 TGTAAGACCAT
1 TGTAAGACCAT
84501972 GTCTGGGACA
Statistics
Matches: 120, Mismatches: 17, Indels: 26
0.74 0.10 0.16
Matches are distributed among these distances:
44 9 0.08
45 70 0.58
46 7 0.06
47 3 0.03
48 6 0.05
49 17 0.14
50 8 0.07
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (45 bp):
TGTAAGACCATAGCTGGGCTATCAGCTTCGATATGTGTGATCCCA
Found at i:84501978 original size:139 final size:139
Alignment explanation
Indices: 84501718--84501971 Score: 456
Period size: 139 Copynumber: 1.8 Consensus size: 139
84501708 GGCATCATTA
84501718 TGTGATCCCATGTAAGACCATGTCTGGGAAATGGCATTGGCATCGATATGAGAACATCGTGTAAG
1 TGTGATCCCATGTAAGACCATGTCTGGGAAATGGCATTGGCATCGATATGAGAACATCGTGTAAG
* *
84501783 ACCATAGCTGGGCTATCAGCTTCGATATGTGTGATCCTATGTGAGACCATAGCTGGGCTATCAGC
66 ACCATAGCTGGGCTATCAGCTTCGATATGTGTGATCCCATGTAAGACCATAGCTGGGCTATCAGC
84501848 TTTGATATG
131 TTTGATATG
* *
84501857 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGAGAACATCGTGTAAG
1 TGTGATCCCATGTAAGACCATGTCTGGGAAATGGCATTGGCATCGATATGAGAACATCGTGTAAG
84501922 ACCATAGCTGGGCTA-CTAGCTTCGATATGTGTGATCCCATGTAAGACCAT
66 ACCATAGCTGGGCTATC-AGCTTCGATATGTGTGATCCCATGTAAGACCAT
84501972 GTCTGGGACA
Statistics
Matches: 110, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
138 1 0.01
139 109 0.99
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (139 bp):
TGTGATCCCATGTAAGACCATGTCTGGGAAATGGCATTGGCATCGATATGAGAACATCGTGTAAG
ACCATAGCTGGGCTATCAGCTTCGATATGTGTGATCCCATGTAAGACCATAGCTGGGCTATCAGC
TTTGATATG
Found at i:84509149 original size:29 final size:29
Alignment explanation
Indices: 84509112--84509214 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
84509102 TAATCAGCCG
* ** *
84509112 CGCATACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
84509141 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
84509170 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
84509199 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
84509215 ATCTCTCAAC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
28 3 0.04
29 65 0.96
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:84512887 original size:2 final size:2
Alignment explanation
Indices: 84512880--84512906 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
84512870 GGCCATTTAC
84512880 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
84512907 CACAACCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:84514305 original size:89 final size:89
Alignment explanation
Indices: 84514181--84514425 Score: 359
Period size: 89 Copynumber: 2.8 Consensus size: 89
84514171 ATTTCACCTG
* * *
84514181 CTAGGCTCGAA-GCCCGATATCATTTCA-CTAGCATTATAGCCTGCTAGGCTCGAAGGCTCGAAT
1 CTAGGCTCAAAGGCCCGATATCATTTCACCGA-CATTATAGCCTGCTAGGCTCGAAGGCCCGAAT
*
84514244 AGTATCTCACCGGCATTATAGCCTA
65 AGTATCTCACCGACATTATAGCCTA
* * * *
84514269 CTAGGCTCAAAGGCCCAATAACATTTCACCGACATTATAACCTGCTAGGCTCGAGGGCCCGAATA
1 CTAGGCTCAAAGGCCCGATATCATTTCACCGACATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
*
84514334 GTATCTCACCGACATTATAGCCTG
66 GTATCTCACCGACATTATAGCCTA
* * *
84514358 CTAGGCTCAAAGGCCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATTA
1 CTAGGCTCAAAGGCCCGATATCATTTCACCGACATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
84514423 GTA
66 GTA
84514426 CCGTACAATA
Statistics
Matches: 139, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
88 10 0.07
89 127 0.91
90 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (89 bp):
CTAGGCTCAAAGGCCCGATATCATTTCACCGACATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
GTATCTCACCGACATTATAGCCTA
Found at i:84514418 original size:44 final size:44
Alignment explanation
Indices: 84514122--84514420 Score: 301
Period size: 44 Copynumber: 6.9 Consensus size: 44
84514112 TTTTATCAAA
* * *
84514122 TCACCGGCATT-TAGCCTGCTAGGTTTTAAA--CCCGAAATCA-T
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCCCGATATCATT
* * *
84514163 CCACCAGCATT-TCA-CCTGCTAGGCTCGAA-GCCCGATATCATT
1 TCACCGGCATTAT-AGCCTGCTAGGCTCAAAGGCCCGATATCATT
** * * *
84514205 TCACTAGCATTATAGCCTGCTAGGCTCGAAGGCTCGAATAGT-ATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCG-ATA-TCATT
* * *
84514250 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATT
* * * * *
84514294 TCACCGACATTATAACCTGCTAGGCTCGAGGGCCCGAATAGT-ATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCG-ATA-TCATT
*
84514339 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATT
84514383 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAT
84514421 TAGTACCGTA
Statistics
Matches: 215, Mismatches: 31, Indels: 21
0.81 0.12 0.08
Matches are distributed among these distances:
40 3 0.01
41 28 0.13
42 12 0.06
43 17 0.08
44 81 0.38
45 73 0.34
46 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATT
Found at i:84520753 original size:28 final size:28
Alignment explanation
Indices: 84520721--84520847 Score: 130
Period size: 28 Copynumber: 4.5 Consensus size: 28
84520711 TAATTATATG
** *
84520721 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* * *
84520749 TGGCACTTAGTGTGCGATA-CATCCAGAA
1 TGGCACTTAGTGTGCGA-AGTATCGAGGA
*
84520777 TGGCACTTAGTGTGCGAAGTAACGAGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* * *
84520805 TGGCACTTAGTGTGCGAAGCATCCAGAA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* *
84520833 CGACACTTAGTGTGC
1 TGGCACTTAGTGTGC
84520848 AAGGTATAGG
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
27 1 0.01
28 79 0.98
29 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAGTATCGAGGA
Found at i:84520807 original size:56 final size:56
Alignment explanation
Indices: 84520721--84520847 Score: 184
Period size: 56 Copynumber: 2.3 Consensus size: 56
84520711 TAATTATATG
** * *
84520721 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATA-CATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGA-AGCATCCAGAA
84520777 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAGCATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAGCATCCAGAA
* *
84520833 CGACACTTAGTGTGC
1 TGGCACTTAGTGTGC
84520848 AAGGTATAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
55 1 0.02
56 63 0.98
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAGCATCCAGAA
Found at i:84520875 original size:56 final size:56
Alignment explanation
Indices: 84520732--84520882 Score: 166
Period size: 56 Copynumber: 2.7 Consensus size: 56
84520722 GGCACTTAAC
* * * * *
84520732 GTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAATGGCACTTAGT
1 GTGCGAAGTAACGAGGATGGCACTTAATGTGCGATACATCCAGAACGACACTTAGT
*
84520788 GTGCGAAGTAACGAGGATGGCACTTAGTGTGCGA-AGCATCCAGAACGACACTTAGT
1 GTGCGAAGTAACGAGGATGGCACTTAATGTGCGATA-CATCCAGAACGACACTTAGT
* *
84520844 GTGC-AAGGTATAGGA-TATGGCA-TCTAATGTGCGATACAT
1 GTGCGAA-GTA-ACGAGGATGGCACT-TAATGTGCGATACAT
84520883 TGAATATTCA
Statistics
Matches: 83, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
55 4 0.05
56 75 0.90
57 4 0.05
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (56 bp):
GTGCGAAGTAACGAGGATGGCACTTAATGTGCGATACATCCAGAACGACACTTAGT
Found at i:84520989 original size:32 final size:32
Alignment explanation
Indices: 84520925--84521019 Score: 127
Period size: 32 Copynumber: 3.0 Consensus size: 32
84520915 TGAGTATGAG
* * * * *
84520925 ATTGGTACGAGATGATACAGGTATCTATGGAA
1 ATTGGTACAATATGGTACAGGTATGTACGGAA
*
84520957 ATTTGTACAATATGGTACAGGTATGTACGGAA
1 ATTGGTACAATATGGTACAGGTATGTACGGAA
*
84520989 ATTGGTACAATATGGTACATGTATGTACGGA
1 ATTGGTACAATATGGTACAGGTATGTACGGA
84521020 GATTCAATTG
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (32 bp):
ATTGGTACAATATGGTACAGGTATGTACGGAA
Found at i:84527659 original size:38 final size:38
Alignment explanation
Indices: 84527616--84527823 Score: 114
Period size: 38 Copynumber: 5.0 Consensus size: 38
84527606 TTTCAAATTA
84527616 ACATGTATAACCTTGTCATATCCACTTAGCACCACGTT
1 ACATGTATAACCTTGTCATATCCACTTAGCACCACGTT
* * *
84527654 ACATGTTTAACCGTGGT-ATATCCACTTAGCACCAAGTTAAT
1 ACATGTATAACC-TTGTCATATCCACTTAGCACCACG-T--T
* * * *
84527695 GAATCAATATATGCAACCGTGGCATATCCACTTAGCACGACGTT
1 --A-C-ATGTAT--AACCTTGTCATATCCACTTAGCACCACGTT
** *
84527739 ACATGTATCAATATGTGTATCGTGATATATCCATTTAGCACCACGTT
1 ACATGTAT-AACCT-TG--TC-----ATATCCACTTAGCACCACGTT
* *
84527786 ACACGTATAACCGTGGT-ATATCCACTTAGCACCACGTT
1 ACATGTATAACC-TTGTCATATCCACTTAGCACCACGTT
84527824 TTTCCATTCT
Statistics
Matches: 128, Mismatches: 22, Indels: 40
0.67 0.12 0.21
Matches are distributed among these distances:
38 49 0.38
39 7 0.05
40 7 0.05
41 2 0.02
42 2 0.02
43 1 0.01
44 3 0.02
45 4 0.03
46 5 0.04
47 48 0.38
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCTTGTCATATCCACTTAGCACCACGTT
Found at i:84527716 original size:47 final size:47
Alignment explanation
Indices: 84527662--84527788 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 47
84527652 TTACATGTTT
*
84527662 AACCGTGGTATATCCACTTAGCACCAAGTTA-ATGAATCAATATATG
1 AACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * * *
84527708 CAACCGTGGCATATCCACTTAGCACGACGTTACATGTATCAATATGTG
1 -AACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * * *
84527756 TATCGTGATATATCCATTTAGCACCACGTTACA
1 AACCGTGGTATATCCACTTAGCACCACGTTACA
84527789 CGTATAACCG
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
47 55 0.81
48 13 0.19
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (47 bp):
AACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:84527964 original size:23 final size:23
Alignment explanation
Indices: 84527937--84527985 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
84527927 CACATGTCAC
*
84527937 AAAATAAAATATTA-TTACATAAT
1 AAAATAAAACATTATTTACAT-AT
*
84527960 AAAATAATACATTATTTACATAT
1 AAAATAAAACATTATTTACATAT
84527983 AAA
1 AAA
84527986 CTTACCTCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAATAAAACATTATTTACATAT
Found at i:84530716 original size:37 final size:37
Alignment explanation
Indices: 84530595--84530705 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
84530585 AGCTCAGATG
* *
84530595 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
84530632 AAATCTCCACACGTAGTCATCGGGTTTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
84530669 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
84530706 TAGTCACCAC
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:84530725 original size:74 final size:75
Alignment explanation
Indices: 84530595--84530735 Score: 185
Period size: 74 Copynumber: 1.9 Consensus size: 75
84530585 AGCTCAGATG
* * * *
84530595 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGT-TT
1 AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACAAAATCACCACACATAGTCATCGGGTCTT
84530659 TACCCGGACA
66 TACCCGGACA
* * * * * *
84530669 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACATAGTCACCACATATGGTCATCTGGTCTT
1 AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACAAAATCACCACACATAGTCATCGGGTCTT
84530734 TA
66 TA
84530736 ATCCCAGGTT
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
74 52 0.93
75 4 0.07
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (75 bp):
AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACAAAATCACCACACATAGTCATCGGGTCTT
TACCCGGACA
Found at i:84530958 original size:46 final size:46
Alignment explanation
Indices: 84530890--84531026 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
84530880 TATATATACA
* * * *
84530890 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
84530936 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
84530982 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
84531027 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:84531063 original size:47 final size:47
Alignment explanation
Indices: 84531000--84531425 Score: 669
Period size: 47 Copynumber: 9.1 Consensus size: 47
84530990 ACACATTTCG
* * * *
84531000 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
84531047 CATTGGTCATTCGGCCTTATCACACATACT-CATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATA-TGCATGTTCACATTCATCA
*
84531094 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
84531141 CATTGGCCATTCGGCCTTATCACACATACT-CATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATA-TGCATGTTCACATTCATCA
*
84531188 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
84531235 CATTGGCCATTCGGCCTTATCACACATACT-CATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATA-TGCATGTTCACATTCATCA
* *
84531282 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
84531329 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * * **
84531376 CATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
84531423 CAT
1 CAT
84531426 AAAATCCTAA
Statistics
Matches: 355, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 354 1.00
48 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:84535703 original size:40 final size:40
Alignment explanation
Indices: 84535609--84535828 Score: 213
Period size: 40 Copynumber: 5.5 Consensus size: 40
84535599 TATTCGAATG
* *
84535609 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCTA-GTGACT
* * *
84535650 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAG-TGACT
* * *
84535690 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
*
84535730 ATATCCGGGCTAAG-TCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTC-GTGCTAGTGACT
* * * *
84535770 ATATCCGGGCTAAGACCCGAAGGCCTT-GTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGA-CT
84535809 ATATCC-GGCTAA-ATCCGAAG
1 ATATCCGGGCTAAGATCCGAAG
84535829 ATTACTTGAG
Statistics
Matches: 150, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
37 7 0.05
38 7 0.05
39 15 0.10
40 90 0.60
41 30 0.20
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
Found at i:84535779 original size:80 final size:81
Alignment explanation
Indices: 84535609--84535793 Score: 252
Period size: 80 Copynumber: 2.3 Consensus size: 81
84535599 TATTCGAATG
* * *
84535609 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
84535674 ATTCGTGCGAGTTGCT
66 ATTCGTGCGAGTTGCC
* *
84535690 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
84535753 CA-TCTGTGCTAG-TGACC
65 CATTC-GTGCGAGTTG-CC
84535770 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
84535794 CTTGTGCAAG
Statistics
Matches: 94, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
79 5 0.05
80 57 0.61
81 32 0.34
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCC
Found at i:84543801 original size:40 final size:40
Alignment explanation
Indices: 84543707--84543930 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
84543697 TATTCGAATG
*
84543707 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
84543748 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
84543788 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
84543828 ATATCC-GGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
84543867 ATATCCGGGCTAAG-TCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
84543907 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
84543931 CTTGTGCAAG
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 39 0.25
40 90 0.57
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:84543880 original size:79 final size:79
Alignment explanation
Indices: 84543707--84543966 Score: 319
Period size: 79 Copynumber: 3.3 Consensus size: 79
84543697 TATTCGAATG
* * *
84543707 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGG-CTAAGACCCGAAGGC
*
84543772 ATTCGTGCGAGTTGCT
64 ATTCGTGCGAGTCGCT
* * *
84543788 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGCTAAGACCCGAAGGCAT
* *
84543853 TTGTGCTAG-CGACT
66 TCGTGCGAGTCG-CT
* * *
84543867 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGACCCGAAGGCA
* * *
84543932 TT-GTGCAAGTAGTT
65 TTCGTGCGAGTCGCT
*
84543946 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
84543967 ATTACTTGAG
Statistics
Matches: 157, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
78 15 0.10
79 79 0.50
80 31 0.20
81 32 0.20
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGCTAAGACCCGAAGGCAT
TCGTGCGAGTCGCT
Found at i:84543926 original size:119 final size:119
Alignment explanation
Indices: 84543707--84543966 Score: 325
Period size: 119 Copynumber: 2.2 Consensus size: 119
84543697 TATTCGAATG
* * *
84543707 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCC-GGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
84543772 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
65 ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* *
84543828 ATATCCGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGGC
* *
84543891 A-TCTGTGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 ATTC-GTGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
84543946 ATATCCGGCTAA-ATCCCGAAG
1 ATATCCGGCTAAGA-CCCGAAG
84543967 ATTACTTGAG
Statistics
Matches: 124, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
117 2 0.02
118 34 0.27
119 57 0.46
120 25 0.20
121 6 0.05
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (119 bp):
ATATCCGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCA
TTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:84547511 original size:40 final size:40
Alignment explanation
Indices: 84547417--84547601 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
84547407 TATTCGAATG
* * *
84547417 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCTA-GTGACT
* * *
84547458 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAG-TGACT
* * *
84547498 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
*
84547538 ATATCCGGGCTAAG-TCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTC-GTGCTAGTGACT
*
84547578 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
84547602 CTTGTGCAAG
Statistics
Matches: 121, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
39 2 0.02
40 90 0.74
41 28 0.23
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
Found at i:84547584 original size:80 final size:81
Alignment explanation
Indices: 84547417--84547601 Score: 243
Period size: 80 Copynumber: 2.3 Consensus size: 81
84547407 TATTCGAATG
* * * *
84547417 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
84547482 ATTCGTGCGAGTTGCT
66 ATTCGTGCGAGTTGCC
* *
84547498 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
84547561 CA-TCTGTGCTAG-TGACC
65 CATTC-GTGCGAGTTG-CC
84547578 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
84547602 CTTGTGCAAG
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
79 5 0.05
80 57 0.61
81 31 0.33
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCC
Found at i:84552206 original size:68 final size:66
Alignment explanation
Indices: 84552134--84552305 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
84552124 CATCATGTGT
* * * *
84552134 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
84552197 TGTAG
62 TGTAG
** * *
84552202 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
84552267 AG
65 AG
* * * *
84552269 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
84552306 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:84552239 original size:64 final size:64
Alignment explanation
Indices: 84552158--84552340 Score: 201
Period size: 67 Copynumber: 2.8 Consensus size: 64
84552148 AGACATTATG
* * *
84552158 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
84552222 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
84552287 AA
63 AA
* * *
84552289 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
84552341 TCGAACTTTA
Statistics
Matches: 98, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 25 0.26
66 21 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:84559091 original size:37 final size:37
Alignment explanation
Indices: 84559038--84559128 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
84559028 TTATTACGAA
84559038 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
84559075 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
84559112 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
84559129 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:84559284 original size:49 final size:49
Alignment explanation
Indices: 84559224--84559503 Score: 398
Period size: 49 Copynumber: 5.5 Consensus size: 49
84559214 TTTTACATTA
84559224 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* *
84559273 GCCTTTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* *
84559322 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
84559371 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCA-C-CA--CAT--C---G
* * *
84559429 GCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* *
84559478 GCCATTCGGCCTTATCACACATATAT
1 GCCATTAGGCCTTATCACATATATAT
84559504 GTATATCATA
Statistics
Matches: 210, Mismatches: 12, Indels: 18
0.88 0.05 0.08
Matches are distributed among these distances:
49 158 0.75
51 2 0.01
53 3 0.01
54 3 0.01
55 1 0.00
56 2 0.01
58 41 0.20
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
Found at i:84559367 original size:58 final size:57
Alignment explanation
Indices: 84559305--84559476 Score: 243
Period size: 58 Copynumber: 3.1 Consensus size: 57
84559295 ACATACACTT
*
84559305 TCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA-T--
1 TCACATTCA-CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
84559360 T--CA-T--CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
1 TCACATTCACACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
* *
84559412 TCACATTCATCACATTGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCA
1 TCACATTCA-CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
84559470 TCACATT
1 TCACATT
84559477 GGCCATTCGG
Statistics
Matches: 105, Mismatches: 3, Indels: 15
0.85 0.02 0.12
Matches are distributed among these distances:
49 43 0.41
50 1 0.01
52 2 0.02
53 2 0.02
54 2 0.02
55 2 0.02
58 53 0.50
ACGTcount: A:0.31, C:0.30, G:0.06, T:0.33
Consensus pattern (57 bp):
TCACATTCACACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
Found at i:84559417 original size:9 final size:9
Alignment explanation
Indices: 84559403--84559427 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
84559393 ATATACACTT
84559403 TCACATTCA
1 TCACATTCA
84559412 TCACATTCA
1 TCACATTCA
84559421 TCACATT
1 TCACATT
84559428 GGCCATTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (9 bp):
TCACATTCA
Found at i:84559418 original size:107 final size:107
Alignment explanation
Indices: 84559305--84559503 Score: 335
Period size: 107 Copynumber: 1.9 Consensus size: 107
84559295 ACATACACTT
*
84559305 TCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATC
1 TCACATTCACCACATCGGCCATTAAGCCTTATCACATATACATACACTTTCACATTCATCACATC
*
84559370 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
66 GGCCATTAGGCCTTATCACACATATATACACTTTCACATTCA
* * * *
84559412 TCACATTCATCACATTGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCACATT
1 TCACATTCACCACATCGGCCATTAAGCCTTATCACATATACATACACTTTCACATTCATCACATC
*
84559477 GGCCATTCGGCCTTATCACACATATAT
66 GGCCATTAGGCCTTATCACACATATAT
84559504 GTATATCATA
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
107 85 1.00
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.32
Consensus pattern (107 bp):
TCACATTCACCACATCGGCCATTAAGCCTTATCACATATACATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACACATATATACACTTTCACATTCA
Found at i:84562481 original size:37 final size:36
Alignment explanation
Indices: 84562430--84562516 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
84562420 TACGAAGTCT
84562430 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
84562466 GTACCCGGACGTAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
84562503 TCACCCGGAACATA
1 T-ACCCGG-ACATA
84562517 TTTCTAAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.89
38 4 0.09
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:84562651 original size:49 final size:49
Alignment explanation
Indices: 84562585--84562930 Score: 595
Period size: 49 Copynumber: 7.1 Consensus size: 49
84562575 TTTACCACAT
* * *
84562585 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
84562634 ATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* **
84562683 ATATATATACATTTTCACATTCATCACATTAGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
84562732 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
84562781 ATATGTATACATTTTCACATTCATCAC-TCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
84562829 ATATGTATACATTTTCACATCCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
84562878 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
84562927 ATAT
1 ATAT
84562931 ATTATTATGT
Statistics
Matches: 285, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
48 47 0.16
49 238 0.84
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (49 bp):
ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:84562708 original size:27 final size:26
Alignment explanation
Indices: 84562678--84562760 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 26
84562668 ATTAGGCCTT
84562678 ATCACATATATATACATTTTCACATTC
1 ATCACATAT-TATACATTTTCACATTC
** **
84562705 ATCAC--ATTAGCCATTAGGC-C-TT-
1 ATCACATATTATACATT-TTCACATTC
84562727 ATCACATATGTATACATTTTCACATTC
1 ATCACATAT-TATACATTTTCACATTC
84562754 ATCACAT
1 ATCACAT
84562761 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
22 5 0.12
23 2 0.05
24 10 0.24
25 10 0.24
26 2 0.05
27 12 0.29
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (26 bp):
ATCACATATTATACATTTTCACATTC
Found at i:84566843 original size:40 final size:40
Alignment explanation
Indices: 84566799--84566990 Score: 330
Period size: 40 Copynumber: 4.8 Consensus size: 40
84566789 CCAGCATGAT
* * *
84566799 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
84566839 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
84566879 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
84566919 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
84566959 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
84566991 CTCAATTCTC
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:84569036 original size:49 final size:49
Alignment explanation
Indices: 84568970--84569316 Score: 622
Period size: 49 Copynumber: 7.1 Consensus size: 49
84568960 TTTACCACAT
* *
84568970 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
84569019 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
84569068 GTATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
84569117 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
84569166 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
84569215 ATATGTATACATTTTCACATCCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
84569264 ATATGTATACATTTTCACATTCATCATGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
84569313 ATAT
1 ATAT
84569317 ATTATTATGT
Statistics
Matches: 287, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 287 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.34
Consensus pattern (49 bp):
ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:84572513 original size:40 final size:40
Alignment explanation
Indices: 84572375--84572591 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
84572365 TGGATGATAA
*
84572375 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
84572416 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
84572456 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
84572495 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
84572535 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
84572574 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84572592 TACTTGGCTT
Statistics
Matches: 158, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
38 15 0.09
39 52 0.33
40 64 0.41
41 23 0.15
42 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84572516 original size:79 final size:80
Alignment explanation
Indices: 84572375--84572591 Score: 275
Period size: 79 Copynumber: 2.7 Consensus size: 80
84572365 TGGATGATAA
* *
84572375 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-TTCGGGCTAAGTCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATCCGGGCTAAGTCCCGAAGGCAT
* *
84572438 TTGTGCGAGTTATTACAT
63 TGGTGCGAGTTACTACAT
84572456 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
*
84572520 TGCGAGTTACTATAT
66 TGCGAGTTACTACAT
* * * *
84572535 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
84572592 TACTTGGCTT
Statistics
Matches: 123, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
78 17 0.14
79 62 0.50
80 38 0.31
81 6 0.05
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACAT
Found at i:84580536 original size:40 final size:40
Alignment explanation
Indices: 84580480--84580694 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
84580470 TGGATGATAA
*
84580480 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
84580521 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
84580560 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
84580599 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
84580639 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
84580677 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84580695 TACTTGGCTT
Statistics
Matches: 158, Mismatches: 12, Indels: 12
0.87 0.07 0.07
Matches are distributed among these distances:
37 13 0.08
38 10 0.06
39 51 0.32
40 80 0.51
41 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84580614 original size:79 final size:80
Alignment explanation
Indices: 84580480--84580694 Score: 282
Period size: 79 Copynumber: 2.7 Consensus size: 80
84580470 TGGATGATAA
*
84580480 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T-CGGGCTAAGTCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATCCGGGCTAAGTCCCGAAGGCAT
* *
84580542 TTGTGCGAGTTATTACAT
63 TGGTGCGAGTTACTACAT
84580560 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
*
84580624 TGCGAGTTACTATAT
66 TGCGAGTTACTACAT
* * * *
84580639 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TACTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
84580695 TACTTGGCTT
Statistics
Matches: 123, Mismatches: 8, Indels: 11
0.87 0.06 0.08
Matches are distributed among these distances:
77 15 0.12
78 18 0.15
79 67 0.54
80 23 0.19
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACAT
Found at i:84584630 original size:38 final size:38
Alignment explanation
Indices: 84584587--84584717 Score: 111
Period size: 38 Copynumber: 3.2 Consensus size: 38
84584577 TTTCAAATTA
84584587 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * * *
84584625 ACATGT-TTACTCGTGGTATATCCACTTGGCACCACATTAAT
1 ACATGTATAAC-CGTGGCATATCCACTTAGCACCAC-GT--T
* *
84584666 AAATCAAAATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C---ATGTATAACCGTGGCATATCCACTTAGCACCACGTT
84584710 ACATGTAT
1 ACATGTAT
84584718 CAATATGTGT
Statistics
Matches: 71, Mismatches: 11, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
37 3 0.04
38 32 0.45
39 1 0.01
41 2 0.03
42 1 0.01
43 1 0.01
44 2 0.03
46 1 0.01
47 25 0.35
48 3 0.04
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:84584741 original size:48 final size:48
Alignment explanation
Indices: 84584639--84584765 Score: 148
Period size: 48 Copynumber: 2.7 Consensus size: 48
84584629 GTTTACTCGT
* * ** *
84584639 GGTATATCCACTTGGCACCACATTA-ATAAATCAAAATATGTAACCGT
1 GGTATATCCACTTAGCACCACGTTACATGTATCAAAATATGTAACCGC
* * * *
84584686 GGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGC
1 GGTATATCCACTTAGCACCACGTTACATGTATCAAAATATGTAACCGC
* *
84584734 GGTATATCCACTTAGCACCATGTTACAAGTAT
1 GGTATATCCACTTAGCACCACGTTACATGTAT
84584766 ATCCGTGGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 22 0.33
48 45 0.67
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (48 bp):
GGTATATCCACTTAGCACCACGTTACATGTATCAAAATATGTAACCGC
Found at i:84586447 original size:12 final size:12
Alignment explanation
Indices: 84586430--84586455 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84586420 GACAAAAGCC
84586430 ATTTACATATAT
1 ATTTACATATAT
84586442 ATTTACATATAT
1 ATTTACATATAT
84586454 AT
1 AT
84586456 ATAGACACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTTACATATAT
Found at i:84588615 original size:94 final size:94
Alignment explanation
Indices: 84588505--84588712 Score: 371
Period size: 94 Copynumber: 2.2 Consensus size: 94
84588495 TAGGACCACT
* **
84588505 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATTGAAGCCGATAG
1 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACACACAGAAGCCGATAG
84588570 CCCAGCTATGATCTTACACGATGTTCTCA
66 CCCAGCTATGATCTTACACGATGTTCTCA
*
84588599 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACACACAGAAGTCGATAG
1 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACACACAGAAGCCGATAG
*
84588664 CCCAGCTATGGTCTTACACGATGTTCTCA
66 CCCAGCTATGATCTTACACGATGTTCTCA
84588693 TATCGATGCCAATGCCATGT
1 TATCGATGCCAATGCCATGT
84588713 GATAGGGAAA
Statistics
Matches: 109, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 109 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (94 bp):
TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACACACAGAAGCCGATAG
CCCAGCTATGATCTTACACGATGTTCTCA
Found at i:84588634 original size:49 final size:48
Alignment explanation
Indices: 84588463--84588646 Score: 148
Period size: 48 Copynumber: 3.9 Consensus size: 48
84588453 CATAGTAGGG
* * * ** * *
84588463 TGCCAATGCCATATCCCGGATATGGTCTTACATAGGACCACTTATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGA
* *
84588511 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACAT--A
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGA
* * * *
84588557 TTG--AA-GCCGATAG-CCCAG-CTATGATCTTACACGATGTTCTCATATCGA
1 -TGCCAATGCC-AT-GTCCCAGAC-ATGGTCTTACACG-GGATCACATATCGA
*
84588605 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACA
84588647 CACACAGAAG
Statistics
Matches: 106, Mismatches: 18, Indels: 24
0.72 0.12 0.16
Matches are distributed among these distances:
44 4 0.04
45 20 0.19
46 9 0.08
47 4 0.04
48 45 0.42
49 20 0.19
50 4 0.04
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGA
Found at i:84591707 original size:31 final size:31
Alignment explanation
Indices: 84591630--84591736 Score: 180
Period size: 31 Copynumber: 3.5 Consensus size: 31
84591620 TTTGTAGAGC
* *
84591630 CACACGTCCGTGTGGGTAGACCGTGTGGTCA
1 CACACGCCCGTGTGGGTAGGCCGTGTGGTCA
84591661 CACAC-CCCGTGTGGGTAGGCCGTGTGGTCA
1 CACACGCCCGTGTGGGTAGGCCGTGTGGTCA
*
84591691 CACACGCCTGTGTGGGTAGGCCGTGTGGTCA
1 CACACGCCCGTGTGGGTAGGCCGTGTGGTCA
84591722 CACACGCCCGTGTGG
1 CACACGCCCGTGTGG
84591737 CTTAGGAAAC
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
30 28 0.39
31 43 0.61
ACGTcount: A:0.14, C:0.29, G:0.36, T:0.21
Consensus pattern (31 bp):
CACACGCCCGTGTGGGTAGGCCGTGTGGTCA
Found at i:84593093 original size:94 final size:94
Alignment explanation
Indices: 84592982--84593217 Score: 357
Period size: 94 Copynumber: 2.5 Consensus size: 94
84592972 TAGGACCACT
* * **
84592982 TATCGATGCCAATGCCATGTCCCAAACATAGTCTTACATGGGATCACACATATCGAAGTTGATAG
1 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCGAAGCCGATAG
84593047 CCCAACTATGATCTTAAACGATGTTCTCA
66 CCCAACTATGATCTTAAACGATGTTCTCA
*
84593076 TATTGATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGG-TCACACATATCGAAGCCGATA
1 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGATCACACATATCGAAGCCGATA
* * * *
84593140 GCCCAGCTATGGTCTTACACGTTGTTCTCA
65 GCCCAACTATGATCTTAAACGATGTTCTCA
* *
84593170 TATCGATGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATCACA
1 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
84593218 TAATGACACC
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
93 2 0.02
94 124 0.97
95 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (94 bp):
TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCGAAGCCGATAG
CCCAACTATGATCTTAAACGATGTTCTCA
Found at i:84593202 original size:49 final size:47
Alignment explanation
Indices: 84593058--84593207 Score: 128
Period size: 49 Copynumber: 3.1 Consensus size: 47
84593048 CCAACTATGA
* * *
84593058 TCTTAAACGATGTTCTCATATTGATGCCAATGCCATGTCCCAGACATGG
1 TCTTACACG-TGTTCTCATA-TGATGCCAAAGCCATATCCCAGACATGG
* * * * * * *
84593107 TCTTACATGAGGTCACACAT-AT--CGAAGCCGATAGCCCAG-CTATGG
1 TCTTACACGTGTTCTCATATGATGCCAAAGCC-ATATCCCAGAC-ATGG
84593152 TCTTACACGTTGTTCTCATATCGATGCCAAAGCCATATCCCAGACATGG
1 TCTTACACG-TGTTCTCATAT-GATGCCAAAGCCATATCCCAGACATGG
84593201 TCTTACA
1 TCTTACA
84593208 TGGGATCACA
Statistics
Matches: 76, Mismatches: 17, Indels: 16
0.70 0.16 0.15
Matches are distributed among these distances:
44 6 0.08
45 19 0.25
46 9 0.12
47 1 0.01
48 8 0.11
49 26 0.34
50 7 0.09
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (47 bp):
TCTTACACGTGTTCTCATATGATGCCAAAGCCATATCCCAGACATGG
Found at i:84595598 original size:48 final size:46
Alignment explanation
Indices: 84595537--84595667 Score: 138
Period size: 48 Copynumber: 2.8 Consensus size: 46
84595527 ACAGTATGAG
* *
84595537 AGCCACTGTAAGACATTTTTGGGACATGCATCGGCCTTAAGA-TATTTA
1 AGCCAGTGTAAGACATTTTTGGGACATGCATCGGCCTTAAGACGA---A
* * * * *
84595585 AGCCAGTGTAAGACATTTCTGGGACATGCATCAGCATTGAGACGAG
1 AGCCAGTGTAAGACATTTTTGGGACATGCATCGGCCTTAAGACGAA
* * *
84595631 AGCTAGTGTAAGACATGTTTGAGACATGCATCGGCCT
1 AGCCAGTGTAAGACATTTTTGGGACATGCATCGGCCT
84595668 CGTAATTTAC
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 31 0.45
48 37 0.54
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (46 bp):
AGCCAGTGTAAGACATTTTTGGGACATGCATCGGCCTTAAGACGAA
Found at i:84595676 original size:92 final size:92
Alignment explanation
Indices: 84595497--84595667 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 92
84595487 TATGTGTGCT
* * * *
84595497 AGTGTAAGACATGTCTGGGACATGCATCATACAGTATGAGAGCCACTGTAAGACATTTTTGGGAC
1 AGTGTAAGACATGTCTGGGACATGCATCATACAGGACGAGAGCCACTGTAAGACATGTTTGAGAC
84595562 ATGCATCGGCCTTAAGATATTTAAGCC
66 ATGCATCGGCCTTAAGATATTTAAGCC
* * * *
84595589 AGTGTAAGACATTTCTGGGACATGCATCA-GCATTGAGACGAGAGCTAGTGTAAGACATGTTTGA
1 AGTGTAAGACATGTCTGGGACATGCATCATACA--G-GACGAGAGCCACTGTAAGACATGTTTGA
84595653 GACATGCATCGGCCT
63 GACATGCATCGGCCT
84595668 CGTAATTTAC
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
91 2 0.03
92 28 0.41
93 1 0.01
94 37 0.54
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCATACAGGACGAGAGCCACTGTAAGACATGTTTGAGAC
ATGCATCGGCCTTAAGATATTTAAGCC
Found at i:84595775 original size:49 final size:49
Alignment explanation
Indices: 84595703--84595822 Score: 145
Period size: 49 Copynumber: 2.4 Consensus size: 49
84595693 GTGTGTCAGT
*
84595703 GTAAGACCTATCTGGGACATGGCATCGACACT-GATAGATGAGAA-CCAGA
1 GTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGA-AATCCAGA
* * * *
84595752 GTAAGACCTGTCTGGGACATGGCATCGGCCTCGCTATATGAAATCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAATCCAGA
*
84595801 GTAAGACCATGTCTAGGACATG
1 GTAAGACC-TGTCTGGGACATG
84595823 ATGTTAGCAT
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
48 4 0.06
49 46 0.74
50 12 0.19
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAATCCAGA
Found at i:84604424 original size:40 final size:40
Alignment explanation
Indices: 84604365--84604551 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
84604355 CATTGGAATG
* * * *
84604365 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
84604405 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
84604445 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
84604485 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
84604525 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
84604552 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:84604467 original size:80 final size:80
Alignment explanation
Indices: 84604365--84604518 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
84604355 CATTGGAATG
* * ** *
84604365 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
84604430 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
84604445 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
84604510 ATCGTGCGA
66 ATCGTGCGA
84604519 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:84604533 original size:80 final size:80
Alignment explanation
Indices: 84604369--84604551 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
84604359 GGAATGATAT
* ** * *
84604369 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
84604434 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
84604449 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
84604514 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
84604529 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
84604552 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:84604571 original size:80 final size:80
Alignment explanation
Indices: 84604369--84604586 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
84604359 GGAATGATAT
* * * * * * * *
84604369 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
84604433 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
84604449 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
84604514 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
84604529 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
84604587 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:84612471 original size:40 final size:40
Alignment explanation
Indices: 84612412--84612598 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
84612402 CATTGGAATG
* * * *
84612412 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
84612452 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
84612492 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
84612532 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
84612572 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
84612599 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:84612514 original size:80 final size:80
Alignment explanation
Indices: 84612412--84612565 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
84612402 CATTGGAATG
* * ** *
84612412 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
84612477 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
84612492 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
84612557 ATCGTGCGA
66 ATCGTGCGA
84612566 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:84612580 original size:80 final size:80
Alignment explanation
Indices: 84612416--84612598 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
84612406 GGAATGATAT
* ** * *
84612416 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
84612481 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
84612496 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
84612561 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
84612576 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
84612599 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:84612618 original size:80 final size:80
Alignment explanation
Indices: 84612416--84612633 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
84612406 GGAATGATAT
* * * * * * * *
84612416 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
84612480 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
84612496 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
84612561 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
84612576 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
84612634 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:84614552 original size:23 final size:23
Alignment explanation
Indices: 84614488--84614553 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 23
84614478 TATGTGTGCT
84614488 AGTGTAAGACATGTCTG-G-GAC
1 AGTGTAAGACATGTCTGAGAGAC
* * *
84614509 A-TGCATTAGCCATAGTATGAGAGAC
1 AGTG--TAAGACAT-GTCTGAGAGAC
84614534 AGTGTAAGACATGTCTGAGA
1 AGTGTAAGACATGTCTGAGA
84614554 CATGCATCGG
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
20 2 0.06
21 1 0.03
22 6 0.18
23 11 0.33
24 7 0.21
25 4 0.12
26 2 0.06
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (23 bp):
AGTGTAAGACATGTCTGAGAGAC
Found at i:84614556 original size:46 final size:47
Alignment explanation
Indices: 84614488--84614699 Score: 159
Period size: 46 Copynumber: 4.5 Consensus size: 47
84614478 TATGTGTGCT
*
84614488 AGTGTAAGACATGTCTGGGACATGCATTAGCCAT-AG-TA-TGAGAGAC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC-TCAGATATTGA-AGAC
* * * *
84614534 AGTGTAAGACATGTCTGAGACATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTC-AGATATTGAAGAC
* * * * *
84614582 AGTGTAAGACATGTCTGGGACATGCATCGGCGT-TGAGA--CAAGAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGATATTGAAGA-C
* * * **
84614627 TAGTGTAAGTCATGCCTGGGACATGCATCGGCCTCACGATATACAAG-C
1 -AGTGTAAGACATGTCTGGGACATGCATCAGCCTCA-GATATTGAAGAC
* *
84614675 TAGTGTAAGACCTGTTTGGGACATG
1 -AGTGTAAGACATGTCTGGGACATG
84614700 GCGTCAGCTT
Statistics
Matches: 136, Mismatches: 20, Indels: 18
0.78 0.11 0.10
Matches are distributed among these distances:
44 3 0.02
45 2 0.01
46 62 0.46
47 2 0.01
48 61 0.45
49 2 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGATATTGAAGAC
Found at i:84614596 original size:48 final size:46
Alignment explanation
Indices: 84614488--84614842 Score: 208
Period size: 48 Copynumber: 7.5 Consensus size: 46
84614478 TATGTGTGCT
** *
84614488 AGTGTAAGACATGTCTGGGACATGCATTAGCCAT--AG-TATGAGAGAC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAGATAT-A-AGCC
*
84614534 AGTGTAAGACATGTCTGAGACATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA--TAAGCC
* * * *
84614582 AGTGTAAGACATGTCTGGGACATGCATCGGCGTTGAGACA-AGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-AGCC
* * *
84614628 AGTGTAAGTCATGCCTGGGACATGCATCGGCCTC-ACGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATAT--AAGCC
* * * * * * * *
84614676 AGTGTAAGACCTGTTTGGGACATGGCGTCAG-CTTGTTG-TGT--GTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG-AGATATAAGCC
* * * * *
84614720 AGTGTAAGACCTATCTGGGACATGGCATCGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCGAGATAT-A-AGCC
* * * * *
84614769 AGTATAAGACCTGTCTGGGACATAGCATTGGCCTCGCTATATAAAAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG--AGATATAAGCC
84614818 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
84614843 GCGTCGGCAT
Statistics
Matches: 240, Mismatches: 45, Indels: 45
0.73 0.14 0.14
Matches are distributed among these distances:
44 27 0.11
45 5 0.02
46 66 0.28
47 2 0.01
48 69 0.29
49 52 0.22
50 15 0.06
51 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCC
Found at i:84614650 original size:94 final size:94
Alignment explanation
Indices: 84614488--84614699 Score: 250
Period size: 94 Copynumber: 2.3 Consensus size: 94
84614478 TATGTGTGCT
* ** *
84614488 AGTGTAAGACATGTCTGGGACATGCATTAGCCATAGTATGAGAGACAGTGTAAGACATGTCTGAG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTACAAGAGACAGTGTAAGACATGCCTGAG
**
84614553 ACATGCATCGGCCTCGA-GATATTTAAGCC
66 ACATGCATCGGCCTC-ACGATATACAAGCC
* ** *
84614582 AGTGTAAGACATGTCTGGGACATGCATCGGCGTTGAG-ACAAGAG-CTAGTGTAAGTCATGCCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT-AGTACAAGAGAC-AGTGTAAGACATGCCTG
* *
84614645 GGACATGCATCGGCCTCACGATATACAAGCT
64 AGACATGCATCGGCCTCACGATATACAAGCC
* *
84614676 AGTGTAAGACCTGTTTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
84614700 GCGTCAGCTT
Statistics
Matches: 101, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
93 2 0.02
94 97 0.96
95 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTACAAGAGACAGTGTAAGACATGCCTGAG
ACATGCATCGGCCTCACGATATACAAGCC
Found at i:84618445 original size:6 final size:6
Alignment explanation
Indices: 84618434--84618470 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
84618424 CTAGTAATCT
84618434 TGAAAC TGAAAC TGAAAC TGAAAC TGAAAC TGAAAC T
1 TGAAAC TGAAAC TGAAAC TGAAAC TGAAAC TGAAAC T
84618471 AGTAATTTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
TGAAAC
Found at i:84622800 original size:2 final size:2
Alignment explanation
Indices: 84622788--84622827 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
84622778 AATTGATAGT
84622788 TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84622828 TTTTTTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:84629081 original size:20 final size:20
Alignment explanation
Indices: 84629056--84629094 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
84629046 ATGAATAATA
*
84629056 ATAATACAAAGACATAGAAT
1 ATAATACAAAAACATAGAAT
84629076 ATAATACAAAAACATAGAA
1 ATAATACAAAAACATAGAA
84629095 CTTAAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.64, C:0.10, G:0.08, T:0.18
Consensus pattern (20 bp):
ATAATACAAAAACATAGAAT
Found at i:84629104 original size:20 final size:20
Alignment explanation
Indices: 84629056--84629105 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
84629046 ATGAATAATA
* *
84629056 ATAATACAAAGACATAGAAT
1 ATAAAACAAAAACATAGAAT
*
84629076 ATAATACAAAAACATAGAACT
1 ATAAAACAAAAACATAGAA-T
84629097 -TAAAACAAA
1 ATAAAACAAA
84629106 TTAATGCACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.64, C:0.12, G:0.06, T:0.18
Consensus pattern (20 bp):
ATAAAACAAAAACATAGAAT
Found at i:84629565 original size:30 final size:28
Alignment explanation
Indices: 84629503--84629556 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
84629493 GGATTTTGTT
*
84629503 AAAATAATTTAAGGTTTAAAATTTTTAA
1 AAAATAAATTAAGGTTTAAAATTTTTAA
* *
84629531 AAAATAAATTAGGGTTTAAAGTTTTT
1 AAAATAAATTAAGGTTTAAAATTTTT
84629557 TTTAAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (28 bp):
AAAATAAATTAAGGTTTAAAATTTTTAA
Found at i:84629574 original size:35 final size:34
Alignment explanation
Indices: 84629535--84629651 Score: 121
Period size: 34 Copynumber: 3.4 Consensus size: 34
84629525 TTTTAAAAAA
*
84629535 TAAATTAGGGTTTAAAGTTTTTTTTAAAAATTAAT
1 TAAATTAGGGTTTAAAG-TTTTTTAAAAAATTAAT
* ** *
84629570 TAAATTA-GGTTTTAAGGATTTTAAATAAATAAAT
1 TAAATTAGGGTTTAAAGTTTTTTAAA-AAATTAAT
* *
84629604 TAAATTAGGGTTTAGAG-CTTTTAAGAAAATTAAT
1 TAAATTAGGGTTTAAAGTTTTTTAA-AAAATTAAT
*
84629638 TAAATTAAGGTTTA
1 TAAATTAGGGTTTA
84629652 GCTTTTTTTA
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
33 6 0.09
34 48 0.70
35 15 0.22
ACGTcount: A:0.43, C:0.01, G:0.14, T:0.43
Consensus pattern (34 bp):
TAAATTAGGGTTTAAAGTTTTTTAAAAAATTAAT
Found at i:84629964 original size:125 final size:125
Alignment explanation
Indices: 84629709--84630099 Score: 545
Period size: 124 Copynumber: 3.1 Consensus size: 125
84629699 ATATTGACAA
* * * * * *
84629709 TCTACAGTAGTTTCAGAATAATTAATTTTGAGAAGACGGTTCTGAAAAGATAATGTCAAAAACGC
1 TCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAA-ATAGTGTCAAAAATGC
* * * * *
84629774 TTCAAGCAGGGATGCACTGTTAGTAAAATTACCGAAAAAAGCTCCCACGT-AGACGCTCTTTT
65 TTCAAGCA-GGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCTCACGTGA-ATGCTCTTTT
*
84629836 TCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAATAGTTTCAAAAATGCT
1 TCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAATAGTGTCAAAAATGCT
* *
84629901 TCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAATGCTCTCACGTGAATGCTTTTTT
66 TCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCTCACGTGAATGCTCTTTT
* *
84629961 TCTACAGTAGTTCCTG-AAAAATAATTTTGAGAAGACAGTTCTAAAAAATAGTGTCAAAAATGCT
1 TCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAATAGTGTCAAAAATGCT
* * * * *
84630025 TCAAGCAAGATGCACTGTCAACAAAATTACT-AAAAAAACTCTCACATGTATGCTCTTTT
66 TCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCTCACGTGAATGCTCTTTT
84630084 TCTACAGTAGTTCCTG
1 TCTACAGTAGTTCCTG
84630100 TTTGGCCTTA
Statistics
Matches: 239, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
123 39 0.16
124 74 0.31
125 60 0.25
126 22 0.09
127 44 0.18
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (125 bp):
TCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAATAGTGTCAAAAATGCT
TCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCTCACGTGAATGCTCTTTT
Found at i:84633391 original size:48 final size:45
Alignment explanation
Indices: 84633297--84633565 Score: 195
Period size: 46 Copynumber: 5.7 Consensus size: 45
84633287 GGGTTATTGT
* * * *
84633297 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGC-CACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTC-GA-GATGA
* * * *
84633343 GAGCCAGTGTAAGACCCTGTTTGGAACATGGCATCGGCATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGATGA
* * * *
84633391 GTGCTAGTGTAAGACGTGTCTGGGATATGCATCGGTCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGATG-A
84633438 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAT--
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGA
* * * * * *
84633481 GTGTCAGTGTAAGACCATGTCTGGGATATGGCATCGACACAGATATGCTA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTC-GAGATG--A
**
84633531 GAGCTTGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
84633566 AGTACTTGAC
Statistics
Matches: 180, Mismatches: 28, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 74 0.41
47 24 0.13
48 24 0.13
49 1 0.01
50 30 0.17
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGA
Found at i:84637603 original size:35 final size:34
Alignment explanation
Indices: 84637537--84637639 Score: 125
Period size: 35 Copynumber: 2.9 Consensus size: 34
84637527 TGGCTACATG
* *
84637537 TGATGTTTTATTGAACTTGTTATTCGACCATATA
1 TGATGATTTATTGAACTTGTTATTCGGCCATATA
*
84637571 TGATGATTTATTGAACTTGTATATTCGGCCATATG
1 TGATGATTTATTGAACTTGT-TATTCGGCCATATA
* * *
84637606 TGATGATATAATGAACCTTGTGTATTTGGCCATA
1 TGATGATTTATTGAA-CTTGT-TATTCGGCCATA
84637640 CAAGTAAGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
34 19 0.32
35 25 0.42
36 16 0.27
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (34 bp):
TGATGATTTATTGAACTTGTTATTCGGCCATATA
Found at i:84639312 original size:40 final size:40
Alignment explanation
Indices: 84639232--84639450 Score: 345
Period size: 40 Copynumber: 5.5 Consensus size: 40
84639222 TTCGGATGAC
*
84639232 ATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
84639271 ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
84639311 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
84639351 ATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
84639391 ATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
84639431 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
84639451 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 37 0.22
40 129 0.77
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:84647322 original size:64 final size:60
Alignment explanation
Indices: 84647247--84647393 Score: 147
Period size: 64 Copynumber: 2.3 Consensus size: 60
84647237 GAGTGCACAT
* *
84647247 CATGTGTACAAGAAGGCTACGAGATACT-ATATAG-TAGGTCACATGTGTGATACGGGATGTATC
1 CATGTG-ACAAG-AGGCTACGAGAGA-TAATATAGCTAGGTCACATGTGCGAT--GGGATGTAT-
84647310 C
60 C
*
84647311 CATGTAGACAAGAGAGCTACGTGAGAGATAATGTAGCTAGGTCACATGTGCGATGGGATGTATC
1 CATGT-GACAAGAG-GCTAC--GAGAGATAATATAGCTAGGTCACATGTGCGATGGGATGTATC
84647375 CATGTGACAAG-GAGCTACG
1 CATGTGACAAGAG-GCTACG
84647394 TGATGTAGCT
Statistics
Matches: 74, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
60 1 0.01
62 7 0.09
63 8 0.11
64 21 0.28
65 11 0.15
66 10 0.14
67 16 0.22
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (60 bp):
CATGTGACAAGAGGCTACGAGAGATAATATAGCTAGGTCACATGTGCGATGGGATGTATC
Found at i:84654823 original size:68 final size:66
Alignment explanation
Indices: 84654751--84654923 Score: 258
Period size: 68 Copynumber: 2.5 Consensus size: 66
84654741 CATCATGTGT
* *
84654751 ACAAGA-AGGCTACGAGATACTATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
1 ACAAGAGA-GCTACGAGAGA-TAAAT-GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
84654815 GTAG
63 GTAG
84654819 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
84654884 TAG
64 TAG
84654887 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTC
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCTAGGTC
84654924 GTATGAGTGA
Statistics
Matches: 100, Mismatches: 2, Indels: 6
0.93 0.02 0.06
Matches are distributed among these distances:
68 90 0.90
69 5 0.05
70 5 0.05
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTA
G
Done.