Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 272 of 433
Found at i:84654934 original size:68 final size:68
Alignment explanation
Indices: 84654777--84654923 Score: 294
Period size: 68 Copynumber: 2.2 Consensus size: 68
84654767 ATACTATATA
84654777 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
84654842 AAT
66 AAT
84654845 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
84654910 AAT
66 AAT
84654913 GTAGCTAGGTC
1 GTAGCTAGGTC
84654924 GTATGAGTGA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 79 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (68 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
AAT
Found at i:84657860 original size:47 final size:47
Alignment explanation
Indices: 84657765--84657894 Score: 145
Period size: 47 Copynumber: 2.8 Consensus size: 47
84657755 GTGCTAATAA
* * * ** *
84657765 TACCTTGATTTGGCCACGGGCCATGATATAGGTATTTTGTGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGTGAGAAGT
* *
84657812 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCCG-GAATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGTG-AGAAGT
* * *
84657859 TACCTTGATTTGGCTATGGGCCATGGCATAAGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
84657895 TATGGATTGT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
46 1 0.01
47 69 0.99
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGTGAGAAGT
Found at i:84661135 original size:8 final size:8
Alignment explanation
Indices: 84661122--84661170 Score: 55
Period size: 8 Copynumber: 6.1 Consensus size: 8
84661112 AAAATTTAAG
84661122 TTTAATAA
1 TTTAATAA
84661130 TTTAATAA
1 TTTAATAA
84661138 TTGT-ATAA
1 TT-TAATAA
* *
84661146 TATAGTAA
1 TTTAATAA
84661154 TTTAATAA
1 TTTAATAA
*
84661162 TATAATAA
1 TTTAATAA
84661170 T
1 T
84661171 CCAAATATAG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
7 1 0.03
8 32 0.94
9 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (8 bp):
TTTAATAA
Found at i:84661154 original size:16 final size:16
Alignment explanation
Indices: 84661122--84661170 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
84661112 AAAATTTAAG
*
84661122 TTTAATAATTTAATAA
1 TTTAATAATATAATAA
*
84661138 TTGT-ATAATATAGTAA
1 TT-TAATAATATAATAA
84661154 TTTAATAATATAATAA
1 TTTAATAATATAATAA
84661170 T
1 T
84661171 CCAAATATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 1 0.04
16 26 0.93
17 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (16 bp):
TTTAATAATATAATAA
Found at i:84663204 original size:53 final size:53
Alignment explanation
Indices: 84663072--84663222 Score: 196
Period size: 53 Copynumber: 2.8 Consensus size: 53
84663062 ATAAGTGCGC
* * **
84663072 CCGTTTAAGACCATAGCTGGGCTATGGGATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
84663125 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* * *
84663178 CCGTATAAGACCAT-GTCTAGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
84663223 ATCGTGTAAG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 79 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:84663234 original size:46 final size:48
Alignment explanation
Indices: 84663112--84663257 Score: 134
Period size: 53 Copynumber: 3.0 Consensus size: 48
84663102 CGGTGCAATG
* * ** * *
84663112 TGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAA
1 TGATAATGTGAATCCGTATAAGACCATGGCAAGGATATGGCTTCGG--T-A
* * *
84663163 TGTGATAATGTGATTCCGTATAAGACCATGTCTAGGATATGGCTTCGGTA
1 --TGATAATGTGAATCCGTATAAGACCATGGCAAGGATATGGCTTCGGTA
* *
84663213 TGAT-ATGTGAAT-CGTGTAAGACCATGGCAAGGCTATGGCTTCGGT
1 TGATAATGTGAATCCGTATAAGACCATGGCAAGGATATGGCTTCGGT
84663258 GTGTGATGCG
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
46 29 0.35
47 7 0.09
48 4 0.05
50 1 0.01
51 1 0.01
53 40 0.49
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (48 bp):
TGATAATGTGAATCCGTATAAGACCATGGCAAGGATATGGCTTCGGTA
Found at i:84669174 original size:67 final size:65
Alignment explanation
Indices: 84669036--84669287 Score: 212
Period size: 68 Copynumber: 3.8 Consensus size: 65
84669026 CATAATTTTG
* * * * *
84669036 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGT-TTATCTCG
1 GCTCTCTTGT-CTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACA-TCATATCTCG
84669097 TA
64 TA
* * * *
84669099 GCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACAT-ATATCCC
1 GCTCTCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACATCATATCTC
84669163 GTA
63 GTA
* *
84669166 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATCAT-A--TCTC
84669231 GTA
63 GTA
* * * ** *
84669234 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACAT
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGAACCACCCATGCGACCTAGCTACAT
84669288 ACCATCTGTA
Statistics
Matches: 156, Mismatches: 21, Indels: 19
0.80 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 29 0.19
65 2 0.01
66 24 0.15
67 30 0.19
68 51 0.33
69 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATCATATCTCGTA
Found at i:84673660 original size:11 final size:12
Alignment explanation
Indices: 84673635--84673663 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
84673625 GGTTCATTAT
84673635 GAAGAAAAAAGA
1 GAAGAAAAAAGA
84673647 GAAGAAAAAA-A
1 GAAGAAAAAAGA
84673658 GAAGAA
1 GAAGAA
84673664 GAGAGAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
GAAGAAAAAAGA
Found at i:84673663 original size:14 final size:13
Alignment explanation
Indices: 84673635--84673694 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 13
84673625 GGTTCATTAT
84673635 GAAG-AAAAAAGA
1 GAAGAAAAAAAGA
84673647 GAAGAAAAAAAGAA
1 GAAGAAAAAAAG-A
* *
84673661 GAAGAGAGAAAGA
1 GAAGAAAAAAAGA
* * *
84673674 G-ATAAAAGAATA
1 GAAGAAAAAAAGA
84673686 GAAGAAAAA
1 GAAGAAAAA
84673695 GAATTAAACA
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
12 11 0.31
13 14 0.39
14 11 0.31
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (13 bp):
GAAGAAAAAAAGA
Found at i:84680277 original size:26 final size:26
Alignment explanation
Indices: 84680241--84680307 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
84680231 AATTCTCCAC
84680241 AGCTCGTGTGAGCAAGCCTATTTTAA
1 AGCTCGTGTGAGCAAGCCTATTTTAA
84680267 AGCTCGTGTGAGCAAGCCTATTTTAA
1 AGCTCGTGTGAGCAAGCCTATTTTAA
*
84680293 AGCTCCTGTGAGCAA
1 AGCTCGTGTGAGCAA
84680308 TAATGTAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
AGCTCGTGTGAGCAAGCCTATTTTAA
Found at i:84686107 original size:2 final size:2
Alignment explanation
Indices: 84686100--84686125 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
84686090 TTAAGAATGA
84686100 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
84686126 TATTATGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84686247 original size:5 final size:5
Alignment explanation
Indices: 84686237--84686261 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
84686227 GACTTACTGA
84686237 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
84686262 GAAGAACACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:84690712 original size:20 final size:20
Alignment explanation
Indices: 84690687--84690773 Score: 149
Period size: 20 Copynumber: 4.3 Consensus size: 20
84690677 GTTTTGATAT
84690687 ACATGAT-TGCTATGATATGC
1 ACATGATATG-TATGATATGC
84690707 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
84690727 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
84690747 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
84690767 ACATGAT
1 ACATGAT
84690774 GTATTCATAA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
20 62 0.97
21 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:84690714 original size:11 final size:11
Alignment explanation
Indices: 84690698--84690773 Score: 83
Period size: 11 Copynumber: 7.5 Consensus size: 11
84690688 CATGATTGCT
84690698 ATGATATGCAC
1 ATGATATGCAC
*
84690709 ATGATATG--T
1 ATGATATGCAC
84690718 ATGATATGCAC
1 ATGATATGCAC
*
84690729 ATGATATGTAC
1 ATGATATGCAC
84690740 --GATATGCAC
1 ATGATATGCAC
*
84690749 ATGATATG--T
1 ATGATATGCAC
84690758 ATGATATGCAC
1 ATGATATGCAC
84690769 ATGAT
1 ATGAT
84690774 GTATTCATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 24 0.45
11 29 0.55
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:84690721 original size:9 final size:9
Alignment explanation
Indices: 84690709--84690765 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
84690699 TGATATGCAC
84690709 ATGATATGT
1 ATGATATGT
*
84690718 ATGATATGCAC
1 ATGATATG--T
84690729 ATGATATGT
1 ATGATATGT
* *
84690738 ACGATATGCAC
1 ATGATATG--T
84690749 ATGATATGT
1 ATGATATGT
84690758 ATGATATG
1 ATGATATG
84690766 CACATGATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:84696543 original size:40 final size:41
Alignment explanation
Indices: 84696461--84696684 Score: 268
Period size: 40 Copynumber: 5.6 Consensus size: 41
84696451 CGAATGATGA
* * *
84696461 CCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGATCCCGAAGGCATTTGTGC-GAGTTACTAAAT
*
84696501 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
84696541 CCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAATT
1 CCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
84696581 CCGGGCT-A-ATCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 CCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
84696620 CTGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-
1 CCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
84696660 CCGGGCTATG-TCCCGAAGGCATTTG
1 CCGGGCTAAGATCCCGAAGGCATTTG
84696685 AATGAGTAGC
Statistics
Matches: 162, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (41 bp):
CCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:84696682 original size:119 final size:120
Alignment explanation
Indices: 84696461--84696684 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
84696451 CGAATGATGA
* *
84696461 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
84696526 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAATT
66 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAATT
* * * **
84696581 CCGGGCTAA-TCCCGAAGGCATTGGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
* *
84696643 TGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
84696685 AATGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
118 2 0.02
119 72 0.79
120 17 0.19
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAATT
Found at i:84696707 original size:79 final size:78
Alignment explanation
Indices: 84696467--84696684 Score: 255
Period size: 79 Copynumber: 2.7 Consensus size: 78
84696457 ATGACCGGGC
* * *
84696467 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCT-AG-TCCCGAAGGCATTTGTGCG
*
84696530 AGTTACTAAATCCGGAC
63 AGTTACTAAATCCGG-T
* * *
84696547 TAAGAT-CCGAAGGCATTTGTACGAGTTACTA-ATTCCGGGCTAATCCCGAAGGCATTGGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAGTCCCGAAGGCATTTGTGCGA
*
84696610 GTTACTAAATCTGGGT
64 GTTACTAAATC-CGGT
*
84696626 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTA-GTCCCGAAGGCATTTG
84696685 AATGAGTAGC
Statistics
Matches: 118, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
78 2 0.02
79 66 0.56
80 43 0.36
81 7 0.06
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAGTCCCGAAGGCATTTGTGCGAGT
TACTAAATCCGGT
Found at i:84696717 original size:79 final size:79
Alignment explanation
Indices: 84696513--84696709 Score: 188
Period size: 79 Copynumber: 2.5 Consensus size: 79
84696503 GGACTAAGAT
* ** *
84696513 CCGAAGGCATTTGTGCGAGTTACTAAATC-CGGACTAAGAT-CCGAAGGCATTTGTACGAGTTAC
1 CCGAAGGCATTGGAACGAGTTACTAAATCTCGG-TTAA-ATCCCGAAGGCATTTGTACGAGTTAC
*
84696576 TAATTCCGGGCTAATC
64 TAATACCGGGCTAATC
** * * *
84696592 CCGAAGGCATTGGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTGGAACGAGTTACTAAATCTCGGTTAAATCCCGAAGGCATTTGTACGAGTTACTA
*
84696656 ATAACCGGGCTATGTC
66 AT-ACCGGGCTA-ATC
* * *
84696672 CCGAAGGCATTTGAATGAG-TAGCTATATC-CGGTTAAAT
1 CCGAAGGCATTGGAACGAGTTA-CTAAATCTCGGTTAAAT
84696710 TCTGAAGGTA
Statistics
Matches: 99, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.72
80 25 0.25
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTGGAACGAGTTACTAAATCTCGGTTAAATCCCGAAGGCATTTGTACGAGTTACTA
ATACCGGGCTAATC
Found at i:84703484 original size:40 final size:41
Alignment explanation
Indices: 84703402--84703625 Score: 268
Period size: 40 Copynumber: 5.6 Consensus size: 41
84703392 CGAATGATGA
* * *
84703402 CCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGATCCCGAAGGCATTTGTGC-GAGTTACTAAAT
*
84703442 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
84703482 CCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAATT
1 CCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
84703522 CCGGGCT-A-ATCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 CCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
84703561 CCGGGTTAAG-TCCCGAAGGCATTTGTGCAAGTTACTATAAT
1 CCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
84703602 -CGGGCTATG-TCCCGAAGGCATTTG
1 CCGGGCTAAGATCCCGAAGGCATTTG
84703626 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 118 0.72
41 11 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (41 bp):
CCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:84703644 original size:119 final size:120
Alignment explanation
Indices: 84703402--84703632 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
84703392 CGAATGATGA
* *
84703402 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
* *
84703467 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAATT
66 TGCAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAATT
* * **
84703522 CCGGGCTAA-TCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
* *
84703584 TGTGCAAGTTACTATAAT-CGGGCTATG-TCCCGAAGGCATTTGAACGAGT
64 TGTGCAAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
84703633 AGCTATATCC
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
118 2 0.02
119 77 0.79
120 18 0.19
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAATT
Found at i:84703647 original size:79 final size:79
Alignment explanation
Indices: 84703408--84703658 Score: 264
Period size: 79 Copynumber: 3.2 Consensus size: 79
84703398 ATGACCGGGC
* *
84703408 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-ATCCGGACTAAGAT-CCGAAGGCATTTGTGC
1 TAAGTCCCGAAGGCATTTGTGC-AAGTTACTATAATCCGGGCT-AG-TCCCGAAGGCATTTGTGC
*
84703470 GAGTTACTAAATCCGGAC
63 GAGTTACTAAATCCGG-T
* * * * *
84703488 TAAGAT-CCGAAGGCATTTGTACGAGTTACTA-ATTCCGGGCTAATCCCGAAGGCATTGGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCAAGTTACTATAATCCGGGCTAGTCCCGAAGGCATTTGTGCGA
84703551 GTTACTAAATCCGGGT
65 GTTACTAAATCC-GGT
**
84703567 TAAGTCCCGAAGGCATTTGTGCAAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCATTTGTGCAAGTTACTATAATCCGGGCTA-GTCCCGAAGGCATTTGTGCGA
*
84703631 G-TAGCTATATCCGGT
65 GTTA-CTAAATCCGGT
* *
84703646 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
84703659 TACGTGATTC
Statistics
Matches: 144, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
78 2 0.01
79 80 0.56
80 55 0.38
81 7 0.05
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCAAGTTACTATAATCCGGGCTAGTCCCGAAGGCATTTGTGCGAG
TTACTAAATCCGGT
Found at i:84709474 original size:29 final size:29
Alignment explanation
Indices: 84709441--84709539 Score: 119
Period size: 29 Copynumber: 3.4 Consensus size: 29
84709431 TGAATATGAC
84709441 TGGGCCTAATGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* * *
84709470 TGGGCCTAATGGGCCATACACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* * *
84709499 TGGGCCTAAAGGGGCCATATGAATATGA-T
1 TGGGCCT-AATGGGCCATATAAATGTGATT
*
84709528 TGGGCATAATGG
1 TGGGCCTAATGG
84709540 TCAAGATACA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
28 4 0.07
29 40 0.69
30 14 0.24
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:84709551 original size:58 final size:58
Alignment explanation
Indices: 84709441--84709552 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
84709431 TGAATATGAC
* * * * *
84709441 TGGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATACACAGGTGATT
1 TGGGCCTAAGGGGCCATATAAATATGATTTGGGCATAATGGGCAAGACACAGGTGATT
* * *
84709499 TGGGCCTAAAGGGGCCATATGAATATGA-TTGGGCATAATGGTCAAGATACAGGT
1 TGGGCCT-AAGGGGCCATATAAATATGATTTGGGCATAATGGGCAAGACACAGGT
84709553 ATGTGAATTA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
58 28 0.62
59 17 0.38
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (58 bp):
TGGGCCTAAGGGGCCATATAAATATGATTTGGGCATAATGGGCAAGACACAGGTGATT
Found at i:84710599 original size:21 final size:20
Alignment explanation
Indices: 84710560--84710608 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
84710550 TCGTAACTGA
* *
84710560 AAGGGTTTTTTTTAGTTAAT
1 AAGGGTTTCTTTTAGTTAAG
* *
84710580 TAGGGTTTCTTTTATTTTAAG
1 AAGGGTTTCTTTTA-GTTAAG
84710601 AAGGGTTT
1 AAGGGTTT
84710609 TCAATGAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.22, C:0.02, G:0.22, T:0.53
Consensus pattern (20 bp):
AAGGGTTTCTTTTAGTTAAG
Found at i:84712618 original size:29 final size:29
Alignment explanation
Indices: 84712556--84712658 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
84712546 GTGACGAGAT
* * *
84712556 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
84712585 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
84712614 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
84712643 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84712659 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:84719602 original size:29 final size:29
Alignment explanation
Indices: 84719538--84719640 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
84719528 GTGACGAGAT
* * *
84719538 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * * *
84719567 CGACACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
84719596 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
84719625 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84719641 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:84726501 original size:22 final size:22
Alignment explanation
Indices: 84726473--84726520 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
84726463 TCAGTGTCAC
* *
84726473 GACACCACAAGACCGGTTTCGT
1 GACACCACAAGACAGGTTTCAT
*
84726495 GACACCACAAGAGAGGTTTCAT
1 GACACCACAAGACAGGTTTCAT
84726517 GACA
1 GACA
84726521 TTACCTTAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.23, T:0.17
Consensus pattern (22 bp):
GACACCACAAGACAGGTTTCAT
Found at i:84727880 original size:26 final size:26
Alignment explanation
Indices: 84727851--84727907 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
84727841 TTTTTTATAA
*
84727851 AAAATGA-AAAAATA-TTTAAATTTTAC
1 AAAATGATAAAAA-ACTTAAAATTTT-C
*
84727877 AAAATTATAAAAAACTTAAAATTTTC
1 AAAATGATAAAAAACTTAAAATTTTC
84727903 AAAAT
1 AAAAT
84727908 ATATATTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (26 bp):
AAAATGATAAAAAACTTAAAATTTTC
Found at i:84730896 original size:19 final size:20
Alignment explanation
Indices: 84730858--84730897 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
84730848 CTCACATGCC
84730858 AAAGTGAAAAATTGATTTTT
1 AAAGTGAAAAATTGATTTTT
84730878 AAAGTG-AAAATGTGATTTTT
1 AAAGTGAAAAAT-TGATTTTT
84730898 GTGGCCATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.40
Consensus pattern (20 bp):
AAAGTGAAAAATTGATTTTT
Found at i:84731136 original size:47 final size:46
Alignment explanation
Indices: 84730962--84731146 Score: 226
Period size: 47 Copynumber: 3.9 Consensus size: 46
84730952 GTTATTTGTG
* *
84730962 AAAGTGGTGGCTTGTCCATAGTATTATAAAGTGGAAATTTATCTGCA
1 AAAGTGGTGGCTTGTCCATAATATTATAAAGT-GAAATTTATCTACA
*
84731009 AAAGTGGTGGCTTGTCCATAATATAATAAAGTGACAATTTATCTACA
1 AAAGTGGTGGCTTGTCCATAATATTATAAAGTGA-AATTTATCTACA
* * * *
84731056 AAAGTGGTAGCTTGTCCACAATGTTATTAAGTGAAAGTTTATCTACA
1 AAAGTGGTGGCTTGTCCATAATATTATAAAGTGAAA-TTTATCTACA
* * * * *
84731103 ATAGTGGTGGTTTTTCCATAATATTATTAAGTGACAGTTTATCT
1 AAAGTGGTGGCTTGTCCATAATATTATAAAGTGA-AATTTATCT
84731147 TTATTACTGT
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
46 4 0.03
47 115 0.96
48 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.36
Consensus pattern (46 bp):
AAAGTGGTGGCTTGTCCATAATATTATAAAGTGAAATTTATCTACA
Found at i:84733355 original size:29 final size:28
Alignment explanation
Indices: 84733270--84733383 Score: 147
Period size: 28 Copynumber: 4.0 Consensus size: 28
84733260 TACCTATATC
*
84733270 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
* *
84733298 GGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
* *
84733326 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCC-AATCACATTCATA
* * *
84733355 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
84733383 T
1 T
84733384 TCATCCTTAC
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
28 52 0.68
29 25 0.32
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAAGCCCAATCACATTCATA
Found at i:84733380 original size:57 final size:56
Alignment explanation
Indices: 84733270--84733383 Score: 147
Period size: 57 Copynumber: 2.0 Consensus size: 56
84733260 TACCTATATC
* *
84733270 TGGCCCATTAAGCCCAATCATATTCATAGGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATAGGGCCCATTAAGCCCAATCACATTCATA
* * * * * *
84733326 TGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAAGCCC-AATCACATTCATAGGGCCCATTAAGCCCAATCACATTCATA
84733383 T
1 T
84733384 TCATCCTTAC
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
56 14 0.29
57 35 0.71
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (56 bp):
TGGCCCATTAAGCCCAATCACATTCATAGGGCCCATTAAGCCCAATCACATTCATA
Found at i:84733607 original size:8 final size:8
Alignment explanation
Indices: 84733594--84733644 Score: 59
Period size: 8 Copynumber: 6.4 Consensus size: 8
84733584 GTAGCCAAAC
84733594 TTTCGGCT
1 TTTCGGCT
84733602 TTTCGGCCT
1 TTTCGG-CT
84733611 TTT-GGCT
1 TTTCGGCT
* *
84733618 TTTCAGCA
1 TTTCGGCT
*
84733626 TTTCGGCA
1 TTTCGGCT
84733634 TTTCGGCT
1 TTTCGGCT
84733642 TTT
1 TTT
84733645 GTCGATTCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 5 0.14
8 27 0.73
9 5 0.14
ACGTcount: A:0.06, C:0.24, G:0.22, T:0.49
Consensus pattern (8 bp):
TTTCGGCT
Found at i:84735552 original size:28 final size:28
Alignment explanation
Indices: 84735512--84735590 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
84735502 GCAATCAAAT
* * *
84735512 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
84735540 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
84735568 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
84735591 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:84738166 original size:31 final size:31
Alignment explanation
Indices: 84738128--84738190 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
84738118 CTTTTCACAC
*
84738128 TTCATATTTCATAACACTGGGTCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
**
84738159 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
84738190 T
1 T
84738191 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:84738439 original size:24 final size:24
Alignment explanation
Indices: 84738382--84738478 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
84738372 GCTTTATCGT
* *
84738382 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
84738407 ATAACTGGGGCATAAGCCCCTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
84738431 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
84738455 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
84738479 CACTTCCTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
24 55 0.82
25 12 0.18
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:84738552 original size:20 final size:20
Alignment explanation
Indices: 84738527--84738613 Score: 120
Period size: 20 Copynumber: 4.3 Consensus size: 20
84738517 TTATGAACAC
* *
84738527 ATCATGTGCAAATCATACAT
1 ATCATGTGCATAGCATACAT
84738547 ATCATGTGCATAGCATACAT
1 ATCATGTGCATAGCATACAT
*
84738567 GTCATGTGCATAGCATACAT
1 ATCATGTGCATAGCATACAT
* *
84738587 GTCATGTGCATATCATACAT
1 ATCATGTGCATAGCATACAT
*
84738607 ACCATGT
1 ATCATGT
84738614 TTACTAAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (20 bp):
ATCATGTGCATAGCATACAT
Found at i:84744902 original size:30 final size:30
Alignment explanation
Indices: 84744866--84744927 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 30
84744856 CTTTTCACAC
84744866 TTCATATTTCATA-ACATGGGCCGAAGCCTT
1 TTCATATTTCATATAC-TGGGCCGAAGCCTT
84744896 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATA-TACTGGGCCGAAGCCTT
84744927 T
1 T
84744928 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 13 0.43
31 15 0.50
32 2 0.07
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (30 bp):
TTCATATTTCATATACTGGGCCGAAGCCTT
Found at i:84745193 original size:47 final size:48
Alignment explanation
Indices: 84745132--84745260 Score: 197
Period size: 47 Copynumber: 2.7 Consensus size: 48
84745122 CTGGAGGCCT
* *
84745132 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATA
* *
84745181 AGCCC-TTTAATAACTAGGGCATAAGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATA
*
84745228 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
84745261 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 43 0.59
48 26 0.36
49 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATA
Found at i:84745261 original size:24 final size:24
Alignment explanation
Indices: 84745118--84745260 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
84745108 GCTTTATCAT
*
84745118 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
84745143 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84745167 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
84745190 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
84745214 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
84745238 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
84745261 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 22 0.20
24 76 0.69
25 12 0.11
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:84745331 original size:20 final size:20
Alignment explanation
Indices: 84745306--84745375 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
84745296 GCATTTATGA
*
84745306 ACATATCATATGCATATCAT
1 ACATATCATGTGCATATCAT
*
84745326 ACATATCATGTGCATAGCAT
1 ACATATCATGTGCATATCAT
*
84745346 ACATGTCATGTGC-TATCAT
1 ACATATCATGTGCATATCAT
*
84745365 ACATACCATGT
1 ACATATCATGT
84745376 TTACTAAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
19 14 0.32
20 30 0.68
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:84747323 original size:28 final size:28
Alignment explanation
Indices: 84747291--84747559 Score: 205
Period size: 28 Copynumber: 9.5 Consensus size: 28
84747281 GTGAACATAG
*
84747291 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * * * ****
84747319 GCACTGTATGTGTGAGATCAGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
84747347 GGCACTGTGTGTGCGAGTTCCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * * ****
84747376 GCACTGTGTGTGTGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
84747404 GGCACTGTGTGTGCGAGTTCCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * * ****
84747433 GCACTGTGTGTACGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
84747461 GGCACTGTGTGTGCGAGTTCCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * * ****
84747490 GCACTGTGTGTACGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * *
84747518 GGCATTGTGTGTGCGAGTTCTGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
84747547 GCACTGTGTGTGC
1 GCACTGTGTGTGC
84747560 AAGATCGGTT
Statistics
Matches: 177, Mismatches: 60, Indels: 8
0.72 0.24 0.03
Matches are distributed among these distances:
28 96 0.54
29 81 0.46
ACGTcount: A:0.17, C:0.18, G:0.35, T:0.30
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:84747357 original size:57 final size:57
Alignment explanation
Indices: 84747289--84747589 Score: 476
Period size: 57 Copynumber: 5.2 Consensus size: 57
84747279 AAGTGAACAT
* * * *
84747289 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTATGTGTGAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
84747346 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGTGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
84747403 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
84747460 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * * *
84747517 AGGCATTGTGTGTGCGAGTTCTGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
84747574 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
84747590 AAATGACATC
Statistics
Matches: 230, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
57 223 0.97
59 7 0.03
ACGTcount: A:0.18, C:0.17, G:0.35, T:0.30
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:84747359 original size:29 final size:29
Alignment explanation
Indices: 84747319--84747534 Score: 186
Period size: 29 Copynumber: 7.6 Consensus size: 29
84747309 CCGTAACCGA
* * *
84747319 GCACTGTATGTGTGAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* ****
84747348 GCACTGTGTGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* *
84747376 GCACTGTGTGTGTGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* ****
84747405 GCACTGTGTGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* *
84747433 GCACTGTGTGTACGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* ****
84747462 GCACTGTGTGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* *
84747490 GCACTGTGTGTACGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
*
84747519 GCATTGTGTGTGCGAG
1 GCACTGTGTGTGCGAG
84747535 TTCTGTAACC
Statistics
Matches: 139, Mismatches: 45, Indels: 6
0.73 0.24 0.03
Matches are distributed among these distances:
28 63 0.45
29 76 0.55
ACGTcount: A:0.17, C:0.17, G:0.36, T:0.30
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCCGTTGTTGAG
Found at i:84751412 original size:23 final size:23
Alignment explanation
Indices: 84751361--84751406 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
84751351 TCGATAGTTA
84751361 ATTAAACAAAAAGGACTAAATTG
1 ATTAAACAAAAAGGACTAAATTG
84751384 ATTAAACAAAAAGGACTAAATTG
1 ATTAAACAAAAAGGACTAAATTG
84751407 TGTAAAGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.22
Consensus pattern (23 bp):
ATTAAACAAAAAGGACTAAATTG
Found at i:84752588 original size:28 final size:28
Alignment explanation
Indices: 84752548--84752626 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
84752538 GCAATCAAAT
* * *
84752548 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
84752576 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
84752604 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
84752627 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:84754539 original size:16 final size:16
Alignment explanation
Indices: 84754520--84754552 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
84754510 AAAATTTCAA
84754520 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
*
84754536 GATTTCGGGATTTTTG
1 GATTTCGAGATTTTTG
84754552 G
1 G
84754553 GGTATTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:84760757 original size:57 final size:58
Alignment explanation
Indices: 84760694--84760804 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
84760684 AAATTCACAT
* *
84760694 ACCTGTATCTGGCCCATTAAGCCC-AATCATA-TTCATAGAGCCTATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCATATTTC-TAGAGCCCATTAGGCCCAAATC
* * *
84760751 ACCTGTATATGGCCTATTAGGCCCAAATCATATTTCTATAGCCCATTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCATATTTCTAGAGCCCATTAGGCCCA
84760805 GTCACATGCA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
57 21 0.45
58 23 0.49
59 3 0.06
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCATATTTCTAGAGCCCATTAGGCCCAAATC
Found at i:84760798 original size:29 final size:29
Alignment explanation
Indices: 84760705--84760804 Score: 96
Period size: 29 Copynumber: 3.5 Consensus size: 29
84760695 CCTGTATCTG
* *
84760705 GCCCATTAAGCCC-AATCATA-TTCATAGA
1 GCCCATTAGGCCCAAATCATATTTC-TATA
* ** * * *
84760733 GCCTATTAGGCCCAAATCACCTGTATATG
1 GCCCATTAGGCCCAAATCATATTTCTATA
*
84760762 GCCTATTAGGCCCAAATCATATTTCTATA
1 GCCCATTAGGCCCAAATCATATTTCTATA
84760791 GCCCATTAGGCCCA
1 GCCCATTAGGCCCA
84760805 GTCACATGCA
Statistics
Matches: 56, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 11 0.20
29 44 0.79
30 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCATATTTCTATA
Found at i:84761040 original size:8 final size:8
Alignment explanation
Indices: 84761027--84761069 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
84761017 GTAGCCAAAC
84761027 TTTCGGCT
1 TTTCGGCT
84761035 TTTCGGCT
1 TTTCGGCT
* *
84761043 TTTCAGCA
1 TTTCGGCT
*
84761051 TTTCGGCA
1 TTTCGGCT
*
84761059 TTTCAGCT
1 TTTCGGCT
84761067 TTT
1 TTT
84761070 GCCGATTCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.09, C:0.23, G:0.19, T:0.49
Consensus pattern (8 bp):
TTTCGGCT
Found at i:84762321 original size:16 final size:16
Alignment explanation
Indices: 84762302--84762371 Score: 67
Period size: 16 Copynumber: 4.6 Consensus size: 16
84762292 CAAGATTTTA
84762302 GGATTTTTGGATTTCG
1 GGATTTTTGGATTTCG
**
84762318 GGATTTCGGGATTT--
1 GGATTTTTGGATTTCG
*
84762332 --TTTTTTGGATTTCG
1 GGATTTTTGGATTTCG
* *
84762346 AGATTTTTTGATTTCG
1 GGATTTTTGGATTTCG
84762362 GGATTTTTGG
1 GGATTTTTGG
84762372 GGAGTTACAC
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
12 9 0.22
16 32 0.78
ACGTcount: A:0.13, C:0.06, G:0.29, T:0.53
Consensus pattern (16 bp):
GGATTTTTGGATTTCG
Found at i:84762343 original size:36 final size:36
Alignment explanation
Indices: 84762297--84762369 Score: 85
Period size: 36 Copynumber: 2.0 Consensus size: 36
84762287 AAATTCAAGA
*
84762297 TTTTAGGATTTTTG-GATTTCGGGATTTCGGGATTTT
1 TTTTAGGA-TTTCGAGATTTCGGGATTTCGGGATTTT
* ***
84762333 TTTTTGGATTTCGAGATTTTTTGATTTCGGGATTTT
1 TTTTAGGATTTCGAGATTTCGGGATTTCGGGATTTT
84762369 T
1 T
84762370 GGGGAGTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
35 4 0.13
36 27 0.87
ACGTcount: A:0.14, C:0.05, G:0.25, T:0.56
Consensus pattern (36 bp):
TTTTAGGATTTCGAGATTTCGGGATTTCGGGATTTT
Found at i:84763724 original size:20 final size:20
Alignment explanation
Indices: 84763677--84763730 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
84763667 AACAAGGGTC
* *
84763677 ACACGCACGTGGGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
84763697 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
* *
84763717 ACATGCCCATGTGG
1 ACACGCCCGTGTGG
84763731 GCAGGCCGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.15, C:0.28, G:0.39, T:0.19
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:84765277 original size:42 final size:42
Alignment explanation
Indices: 84765169--84765284 Score: 169
Period size: 43 Copynumber: 2.7 Consensus size: 42
84765159 GTACCAATGT
84765169 CATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
* * * *
84765211 CAATAGCCCAGCTATGGTCTTACATGAAGTCTCGTATCGATGC
1 C-ATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
* *
84765254 CATATCCCAGATATGGTCCTACATGTAATCT
1 CATATCCCAGATATGGTCTTACATGAAATCT
84765285 TAGTAACCCT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 26 0.41
43 38 0.59
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
Found at i:84768460 original size:80 final size:80
Alignment explanation
Indices: 84768376--84768524 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
84768366 TATGGTAACC
* * * *
84768376 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
84768440 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
84768456 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
84768521 CCGG
66 CCGG
84768525 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:84768466 original size:40 final size:38
Alignment explanation
Indices: 84768417--84768524 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
84768407 ATCACGATTT
*
84768417 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
84768457 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
84768497 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
84768525 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:84776571 original size:80 final size:80
Alignment explanation
Indices: 84776487--84776635 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
84776477 TATGGTAACC
* * * *
84776487 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
84776551 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
84776567 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
84776632 CCGG
66 CCGG
84776636 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:84776577 original size:40 final size:38
Alignment explanation
Indices: 84776528--84776635 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
84776518 ATCACGATTT
*
84776528 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
84776568 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
84776608 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
84776636 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:84780942 original size:40 final size:40
Alignment explanation
Indices: 84780883--84781069 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
84780873 CATTGGAATG
* * * *
84780883 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
84780923 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
84780963 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
84781003 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
84781043 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
84781070 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:84780985 original size:80 final size:80
Alignment explanation
Indices: 84780883--84781036 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
84780873 CATTGGAATG
* * ** *
84780883 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
84780948 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
84780963 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
84781028 ATCGTGCGA
66 ATCGTGCGA
84781037 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:84781051 original size:80 final size:80
Alignment explanation
Indices: 84780887--84781069 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
84780877 GGAATGATAT
* ** * *
84780887 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
84780952 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
84780967 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
84781032 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
84781047 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
84781070 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:84781089 original size:80 final size:80
Alignment explanation
Indices: 84780887--84781104 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
84780877 GGAATGATAT
* * * * * * * *
84780887 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
84780951 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
84780967 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
84781032 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
84781047 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
84781105 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:84788987 original size:40 final size:40
Alignment explanation
Indices: 84788928--84789114 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
84788918 CATTGGAATG
* * * *
84788928 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
84788968 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
84789008 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
84789048 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
84789088 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
84789115 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:84789030 original size:80 final size:80
Alignment explanation
Indices: 84788928--84789081 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
84788918 CATTGGAATG
* * ** *
84788928 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
84788993 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
84789008 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
84789073 ATCGTGCGA
66 ATCGTGCGA
84789082 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:84789096 original size:80 final size:80
Alignment explanation
Indices: 84788932--84789114 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
84788922 GGAATGATAT
* ** * *
84788932 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
84788997 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
84789012 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
84789077 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
84789092 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
84789115 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:84789134 original size:80 final size:80
Alignment explanation
Indices: 84788932--84789149 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
84788922 GGAATGATAT
* * * * * * * *
84788932 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
84788996 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
84789012 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
84789077 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
84789092 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
84789150 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:84796471 original size:40 final size:41
Alignment explanation
Indices: 84796377--84796597 Score: 255
Period size: 40 Copynumber: 5.6 Consensus size: 41
84796367 TATTCGAATG
*
84796377 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
84796418 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
84796458 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
84796498 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
84796538 ATATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
84796577 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
84796598 ATTACTTGAG
Statistics
Matches: 156, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 16 0.10
40 95 0.61
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:84804507 original size:40 final size:41
Alignment explanation
Indices: 84804413--84804520 Score: 121
Period size: 41 Copynumber: 2.7 Consensus size: 41
84804403 TATTCGAATG
* * *
84804413 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCGAGGTGACT
* ** *
84804454 ATAACCGTACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCGAGGTGACT
*
84804494 ATATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGATCCGAAGGCATT
84804521 TGTAACACCC
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
40 25 0.45
41 29 0.53
42 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCGAAGGCATTCGTGCGAGGTGACT
Found at i:84805939 original size:40 final size:40
Alignment explanation
Indices: 84805894--84806060 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
84805884 CGGAATACAA
84805894 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
84805934 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
84805974 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * * * *
84806014 CCGGATATAATTTCCAGCA-TAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
84806053 CCGGATAT
1 CCGGATAT
84806061 CATTCAATTG
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 25 0.24
40 80 0.76
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:84819716 original size:40 final size:41
Alignment explanation
Indices: 84819622--84819842 Score: 230
Period size: 40 Copynumber: 5.6 Consensus size: 41
84819612 TATTCGAATG
* *
84819622 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCGA-GTGACT
* * *
84819663 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCGAG-TGACT
* *
84819703 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTGACT
*
84819743 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTG-GTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGC-GAGTGACT
* * *
84819783 ATATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTGA-CT
84819822 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
84819843 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 17, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 15 0.10
40 93 0.61
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTGACT
Found at i:84822561 original size:39 final size:40
Alignment explanation
Indices: 84822507--84822721 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
84822497 AAACCAAGTA
* * * *
84822507 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
84822546 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
84822586 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
84822626 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
84822665 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
84822704 CCTT-GGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
84822722 TTATCATCCG
Statistics
Matches: 163, Mismatches: 8, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
38 12 0.07
39 74 0.45
40 77 0.47
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:84822584 original size:40 final size:40
Alignment explanation
Indices: 84822540--84822725 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
84822530 GCTACTTGCT
84822540 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
84822580 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
84822620 CAAATGCCTTCGGGACTTAGCCC-GATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
84822659 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
84822698 CAAATGCCTT-GGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
84822726 CATCCGAATA
Statistics
Matches: 137, Mismatches: 5, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
38 12 0.09
39 61 0.45
40 64 0.47
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:84831163 original size:8 final size:8
Alignment explanation
Indices: 84831150--84831180 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
84831140 ATTTAAGTAA
84831150 ATATTATT
1 ATATTATT
84831158 ATATTATT
1 ATATTATT
84831166 ATATTATT
1 ATATTATT
84831174 ATATTAT
1 ATATTAT
84831181 ATTAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
ATATTATT
Found at i:84831197 original size:49 final size:48
Alignment explanation
Indices: 84831109--84831201 Score: 118
Period size: 49 Copynumber: 1.9 Consensus size: 48
84831099 ATAATATACA
* *
84831109 TATATTAGTAATTATTATATATTTACTTATAATTTAAGTAAATATTAT
1 TATATTAGTAATTATTATATATTTAATTATAATTAAAGTAAATATTAT
*
84831157 TATATTATTATATTATTATATTATATTAATTA-AA-TAAAGTAAATA
1 TATATTAGTA-ATTATTATA-TAT-TTAATTATAATTAAAGTAAATA
84831202 AATTAAATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
48 9 0.23
49 19 0.49
50 5 0.13
51 6 0.15
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (48 bp):
TATATTAGTAATTATTATATATTTAATTATAATTAAAGTAAATATTAT
Found at i:84831413 original size:17 final size:15
Alignment explanation
Indices: 84831391--84831424 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 15
84831381 AGGGGAGAAA
84831391 GAAAGAAAGGAAAAAGG
1 GAAAGAAA-G-AAAAGG
84831408 GAAAGAAAGAAAAGG
1 GAAAGAAAGAAAAGG
84831423 GA
1 GA
84831425 GAAATTGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 1 0.06
17 8 0.47
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (15 bp):
GAAAGAAAGAAAAGG
Found at i:84831428 original size:17 final size:18
Alignment explanation
Indices: 84831390--84831428 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
84831380 CAGGGGAGAA
84831390 AGAAAGAAAGGAAAAAGG
1 AGAAAGAAAGGAAAAAGG
*
84831408 -GAAAGAAA-GAAAAGGG
1 AGAAAGAAAGGAAAAAGG
84831424 AGAAA
1 AGAAA
84831429 TTGGGGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
AGAAAGAAAGGAAAAAGG
Found at i:84835471 original size:43 final size:41
Alignment explanation
Indices: 84835424--84835575 Score: 112
Period size: 43 Copynumber: 3.6 Consensus size: 41
84835414 CAATGCCAAC
* * * *
84835424 GTCCCAGACGTTGTCTTACATGTAATCATATCTCGATGCC-ATT
1 GTCCCAGACGTGGTCTTACACG-AATCAAAT-ACGATGCCGA-T
*
84835467 GTCCCACACAG-GGTCTTACACGAATCAAATACGATGCCGAT
1 GTCCCAGAC-GTGGTCTTACACGAATCAAATACGATGCCGAT
* * * * *
84835508 GTCCCAGACATGGTCTTACACATAATCACATATCAATGCCAAT
1 GTCCCAGACGTGGTCTTACAC-GAATCAAATA-CGATGCCGAT
* *
84835551 GTCTC-GTACGTGGTCTTATACGAAT
1 GTCCCAG-ACGTGGTCTTACACGAAT
84835576 ACACATATCA
Statistics
Matches: 88, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
41 26 0.30
42 20 0.23
43 41 0.47
44 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (41 bp):
GTCCCAGACGTGGTCTTACACGAATCAAATACGATGCCGAT
Found at i:84836172 original size:15 final size:15
Alignment explanation
Indices: 84836149--84836178 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
84836139 TCAAAAATTC
84836149 TAATACAAAACATAT
1 TAATACAAAACATAT
*
84836164 TAATCCAAAACATAT
1 TAATACAAAACATAT
84836179 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:84842048 original size:20 final size:21
Alignment explanation
Indices: 84842023--84842070 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
84842013 AAATGAATAC
*
84842023 ATCATGTGCATAACATA-CAT
1 ATCATGTGCATAACATATCAA
*
84842043 ATCATGTGCATATCATATCAA
1 ATCATGTGCATAACATATCAA
84842064 ATCATGT
1 ATCATGT
84842071 ATATCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (21 bp):
ATCATGTGCATAACATATCAA
Found at i:84842135 original size:25 final size:25
Alignment explanation
Indices: 84842107--84842155 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
84842097 ATAATTAAAC
* * *
84842107 CCTAGGGGTATAACGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
84842132 CCTAGGGGCAAAACAGTCATTTTT
1 CCTAGGGGCAAAACAGTCATTTTT
84842156 CACATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:84846363 original size:25 final size:25
Alignment explanation
Indices: 84846334--84846381 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84846324 TTATAATATG
* * *
84846334 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
84846359 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
84846382 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:84846450 original size:20 final size:20
Alignment explanation
Indices: 84846425--84846483 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
84846415 TAAATATGGT
84846425 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
84846445 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
84846465 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
84846484 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:84846561 original size:24 final size:24
Alignment explanation
Indices: 84846534--84846652 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
84846524 GAGGAAGTGA
* *
84846534 AAAAGGGCTTATGTCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
84846558 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
84846581 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
84846605 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
84846629 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
84846653 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
23 22 0.26
24 52 0.61
25 11 0.13
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:84846603 original size:47 final size:48
Alignment explanation
Indices: 84846534--84846652 Score: 161
Period size: 47 Copynumber: 2.5 Consensus size: 48
84846524 GAGGAAGTGA
*
84846534 AAAAGGGCTTATGTCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
84846581 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
84846629 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
84846653 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
47 42 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:84846881 original size:31 final size:31
Alignment explanation
Indices: 84846843--84846906 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
84846833 CGTTTACAGT
84846843 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* *
84846874 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
84846905 AA
1 AA
84846907 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:84852429 original size:20 final size:21
Alignment explanation
Indices: 84852404--84852451 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
84852394 AAATGAATAC
*
84852404 ATCATGTGCATAACATA-CAT
1 ATCATGTGCATAACATATCAA
*
84852424 ATCATGTGCATATCATATCAA
1 ATCATGTGCATAACATATCAA
84852445 ATCATGT
1 ATCATGT
84852452 ATATCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (21 bp):
ATCATGTGCATAACATATCAA
Found at i:84852516 original size:25 final size:25
Alignment explanation
Indices: 84852488--84852536 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
84852478 ATAATTAAAC
* * *
84852488 CCTAGGGGTATAACGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
84852513 CCTAGGGGCAAAACAGTCATTTTT
1 CCTAGGGGCAAAACAGTCATTTTT
84852537 CATATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:84859704 original size:27 final size:27
Alignment explanation
Indices: 84859644--84859705 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
84859634 TCATACATCT
84859644 CATAGGGGCATAACAGTCATTTTATCA
1 CATAGGGGCATAACAGTCATTTTATCA
* *
84859671 CACAGGGGCATAATAGTCATTTTATCA
1 CATAGGGGCATAACAGTCATTTTATCA
84859698 -ATTAGGGG
1 CA-TAGGGG
84859706 TCTAGGTACA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 1 0.03
27 30 0.97
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (27 bp):
CATAGGGGCATAACAGTCATTTTATCA
Found at i:84864297 original size:43 final size:44
Alignment explanation
Indices: 84864175--84864297 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 44
84864165 AAAGCTTGTA
* * *
84864175 CAATGCCAAC-GTCCCAGACGTGGTCTTATATGT-AATCAAATAT
1 CAATGCC-ACTGTCCCAGACATGGTCTTACATCTAAATCAAATAT
* * *
84864218 CAATGCCACTGTCCCAGACAGGGCCTTACA-CGAAATCAAATAT
1 CAATGCCACTGTCCCAGACATGGTCTTACATCTAAATCAAATAT
* * *
84864261 -GATGCCATTGTCCCAGGCATGGTCTTACATCTAAATC
1 CAATGCCACTGTCCCAGACATGGTCTTACATCTAAATC
84864298 TCAAATCTTA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
42 26 0.40
43 39 0.60
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (44 bp):
CAATGCCACTGTCCCAGACATGGTCTTACATCTAAATCAAATAT
Found at i:84878685 original size:49 final size:49
Alignment explanation
Indices: 84878630--84878775 Score: 177
Period size: 49 Copynumber: 2.9 Consensus size: 49
84878620 GCCGAAGCTA
*
84878630 TCTGGTACCCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-ACAGT
* * *
84878679 TCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACGTCACAGTTT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGAC--CACAG--T
* * *
84878732 TCGGGTACGCATTGTAGCCTGCACTTAGTACTACACATGCGACC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
84878776 TCACAATAGA
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
49 39 0.48
50 4 0.05
51 2 0.02
53 37 0.45
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGT
Found at i:84878780 original size:53 final size:50
Alignment explanation
Indices: 84878633--84878780 Score: 181
Period size: 53 Copynumber: 2.9 Consensus size: 50
84878623 GAAGCTATCT
* * *
84878633 GGTACCCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAGTCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTCACAGTCG
* * * *
84878682 GGTACACATAGTAGCCTACACTTAGTACTACACACGTGACGTCACAGTTTTCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTCACAG---TCG
* *
84878735 GGTACGCATTGTAGCCTGCACTTAGTACTACACATGCGACCTCACA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTCACA
84878781 ATAGATCATT
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
49 36 0.44
50 4 0.05
53 42 0.51
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (50 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTCACAGTCG
Found at i:84880576 original size:43 final size:42
Alignment explanation
Indices: 84880523--84880812 Score: 320
Period size: 43 Copynumber: 6.8 Consensus size: 42
84880513 TGGCAATACA
84880523 TGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATAAG
1 TGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATAAG
* * *
84880565 TGATTATGTGTAAGACCATGTCTGGGACATTGGCATC-ATTATG
1 TGATT-CGTGTAAGACCATGTCTAGGACATTGGCATCGA-TAAG
*
84880608 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATA-
1 TGA-TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA-AG
* * *
84880651 TGATTCGTGTAAGACCCTGTCTGGGACAATGGCATCGATAAG
1 TGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATAAG
84880693 TGATTTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATA-
1 TGA-TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA-AG
* ** * * *
84880736 TGATTCGTATAAGACCATAAC-AAGTCTATTGGCATCGATATG
1 TGATTCGTGTAAGACCATGTCTAGGAC-ATTGGCATCGATAAG
* * * *
84880778 TGATAACATGTAAGACCATATCTAGGATA-TGGCAT
1 TGAT-TCGTGTAAGACCATGTCTAGGACATTGGCAT
84880813 TGTATGTGAT
Statistics
Matches: 213, Mismatches: 23, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
41 4 0.02
42 82 0.38
43 121 0.57
44 6 0.03
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
TGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATAAG
Found at i:84880685 original size:128 final size:127
Alignment explanation
Indices: 84880522--84880753 Score: 369
Period size: 128 Copynumber: 1.8 Consensus size: 127
84880512 ATGGCAATAC
*
84880522 ATGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATAAGTGATTAT-GTGTAAGACCATGT
1 ATGATTCGTGTAAGACCATGTCTAGGACAATGGCATCGATAAGTGATT-TCGTGTAAGACCATGT
* * *
84880586 CTGGGACATTGGCATC-ATTATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
65 CTAGGACATTGGCATCGA-TATATGA-TTCGTATAAGACCATGTCTGGGACATTGGCATCGATAT
* *
84880650 ATGATTCGTGTAAGACCCTGTCTGGGACAATGGCATCGATAAGTGATTTCGTGTAAGACCATGTC
1 ATGATTCGTGTAAGACCATGTCTAGGACAATGGCATCGATAAGTGATTTCGTGTAAGACCATGTC
84880715 TAGGACATTGGCATCGATATATGATTCGTATAAGACCAT
66 TAGGACATTGGCATCGATATATGATTCGTATAAGACCAT
84880754 AACAAGTCTA
Statistics
Matches: 96, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
127 15 0.16
128 80 0.83
129 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (127 bp):
ATGATTCGTGTAAGACCATGTCTAGGACAATGGCATCGATAAGTGATTTCGTGTAAGACCATGTC
TAGGACATTGGCATCGATATATGATTCGTATAAGACCATGTCTGGGACATTGGCATCGATAT
Found at i:84880769 original size:85 final size:85
Alignment explanation
Indices: 84880526--84880812 Score: 366
Period size: 85 Copynumber: 3.4 Consensus size: 85
84880516 CAATACATGA
*
84880526 TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA-AGTGATTATGTGTAAGACCATGTCTGG
1 TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATA-TGATT-CGTGTAAGACCATGTCTGG
84880590 GACATTGGCATC-ATTATGTGAT
64 GACATTGGCATCGA-TATGTGAT
* *
84880612 TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTCGTGTAAGACCCTGTCTGGGA
1 TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTCGTGTAAGACCATGTCTGGGA
* *
84880677 CAATGGCATCGATAAGTGAT
66 CATTGGCATCGATATGTGAT
* ** ** *
84880697 TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTCGTATAAGACCATAAC-AAGT
1 TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTCGTGTAAGACCATGTCTGGGA
84880761 CTATTGGCATCGATATGTGAT
66 C-ATTGGCATCGATATGTGAT
** * * *
84880782 AACATGTAAGACCATATCTAGGATA-TGGCAT
1 TTCGTGTAAGACCATGTCTAGGACATTGGCAT
84880813 TGTATGTGAT
Statistics
Matches: 178, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
84 8 0.04
85 127 0.71
86 42 0.24
87 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (85 bp):
TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTCGTGTAAGACCATGTCTGGGA
CATTGGCATCGATATGTGAT
Found at i:84880790 original size:128 final size:128
Alignment explanation
Indices: 84880530--84880812 Score: 351
Period size: 128 Copynumber: 2.2 Consensus size: 128
84880520 ACATGATTCG
* *
84880530 TGTAAGACCATGTCTAGGACATTGGCATCGATAAGTGATTATGTGTAAGACCATGTCTGGGACAT
1 TGTAAGACCATGTCTAGGACAATGGCATCGATAAGTGATTATGTGTAAGACCATGTCTAGGACAT
* * ** ** * *
84880595 TGGCATCATTATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTCG
66 TGGCATCATTATATGATTTCGTATAAGACCATAACTAAGACATTGGCATCGATATATGATACA
* *
84880658 TGTAAGACCCTGTCTGGGACAATGGCATCGATAAGTGATT-TCGTGTAAGACCATGTCTAGGACA
1 TGTAAGACCATGTCTAGGACAATGGCATCGATAAGTGATTAT-GTGTAAGACCATGTCTAGGACA
* *
84880722 TTGGCATCGA-TATATGA-TTCGTATAAGACCATAAC-AAGTCTATTGGCATCGATATGTGATAA
65 TTGGCATC-ATTATATGATTTCGTATAAGACCATAACTAAGAC-ATTGGCATCGATATATGAT-A
84880784 CA
127 CA
* *
84880786 TGTAAGACCATATCTAGGA-TATGGCAT
1 TGTAAGACCATGTCTAGGACAATGGCAT
84880813 TGTATGTGAT
Statistics
Matches: 133, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
126 2 0.02
127 41 0.31
128 89 0.67
129 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (128 bp):
TGTAAGACCATGTCTAGGACAATGGCATCGATAAGTGATTATGTGTAAGACCATGTCTAGGACAT
TGGCATCATTATATGATTTCGTATAAGACCATAACTAAGACATTGGCATCGATATATGATACA
Found at i:84891595 original size:40 final size:40
Alignment explanation
Indices: 84891522--84891729 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
84891512 CAATTGAATG
* * ** *
84891522 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
84891562 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
84891602 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
84891642 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
84891682 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
84891722 ATATCCGG
1 ATATCCGG
84891730 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:84891660 original size:80 final size:80
Alignment explanation
Indices: 84891524--84891729 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
84891514 ATTGAATGAT
* * ** * * * *
84891524 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
84891588 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
84891604 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
84891669 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
84891684 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
84891730 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:84899557 original size:29 final size:29
Alignment explanation
Indices: 84899515--84899570 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
84899505 GCGAGTTATA
84899515 CTGATTTGGCTTCAGGCCATGAATATCGG
1 CTGATTTGGCTTCAGGCCATGAATATCGG
*
84899544 CTGATTTGGCTTCAGTCCATGAATATC
1 CTGATTTGGCTTCAGGCCATGAATATC
84899571 AGTACTTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.34
Consensus pattern (29 bp):
CTGATTTGGCTTCAGGCCATGAATATCGG
Found at i:84900970 original size:24 final size:24
Alignment explanation
Indices: 84900943--84901040 Score: 160
Period size: 24 Copynumber: 4.0 Consensus size: 24
84900933 AAGGCTGTCA
84900943 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
84900967 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
84900991 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
84901015 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
84901040 G
1 G
84901041 AGTAGGAGTT
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
24 66 0.96
25 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.39, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:84906111 original size:25 final size:26
Alignment explanation
Indices: 84906077--84906131 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 26
84906067 TAAGAGTAAA
84906077 AAGAGTTCTTCTAGGCTTGAAATAC-
1 AAGAGTTCTTCTAGGCTTGAAATACG
84906102 AAGAGTTCTTCTAGGCTTGAAATACG
1 AAGAGTTCTTCTAGGCTTGAAATACG
84906128 AAGA
1 AAGA
84906132 AATTCGATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (26 bp):
AAGAGTTCTTCTAGGCTTGAAATACG
Found at i:84906711 original size:46 final size:45
Alignment explanation
Indices: 84906650--84906772 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 45
84906640 GACGAGAGCT
*
84906650 AGTGTAAAACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGT--GCC
* *
84906696 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGTGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGTGCC
*
84906740 AATGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
84906773 ATGGATATAC
Statistics
Matches: 69, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
44 10 0.14
45 16 0.23
46 43 0.62
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGTGCC
Found at i:84909270 original size:39 final size:39
Alignment explanation
Indices: 84909227--84909502 Score: 426
Period size: 39 Copynumber: 7.1 Consensus size: 39
84909217 ATTATATTAT
* **
84909227 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
* *
84909266 CAGCATGAAGCCTGCGGGACTTGGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
84909305 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
* *
84909344 CAGCACGAAGCCTGCGGGACTTTGGCCTGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
* * *
84909383 CAGCACAAAGCTTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
* *
84909422 CATCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
* *
84909461 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACAGTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
84909500 CAG
1 CAG
84909503 TGTCTTGCAT
Statistics
Matches: 214, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 214 1.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
Found at i:84911515 original size:93 final size:93
Alignment explanation
Indices: 84911356--84911527 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
84911346 GCCCATAAGT
* *
84911356 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84911421 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
84911449 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84911514 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
84911528 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84911523 original size:46 final size:46
Alignment explanation
Indices: 84911348--84911523 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
84911338 ATGTAACCGC
* * *
84911348 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
84911394 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
84911444 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
84911487 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84911524 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:84913951 original size:30 final size:30
Alignment explanation
Indices: 84913907--84913995 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
84913897 CAAAGATAAC
84913907 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
84913936 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
84913966 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
84913996 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:84913955 original size:15 final size:15
Alignment explanation
Indices: 84913907--84913986 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
84913897 CAAAGATAAC
*
84913907 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
84913921 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
84913936 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
84913951 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
84913966 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
84913981 AAGAAA
1 AAGAAA
84913987 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:84913995 original size:15 final size:15
Alignment explanation
Indices: 84913918--84913995 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
84913908 AGAAAACCGA
84913918 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
84913933 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
84913947 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
84913962 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
84913978 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
84913993 ATA
1 ATA
84913996 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:84917061 original size:93 final size:93
Alignment explanation
Indices: 84916949--84917120 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
84916939 GCCCATAAGT
* *
84916949 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84917014 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
84917042 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84917107 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
84917121 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84917116 original size:46 final size:46
Alignment explanation
Indices: 84916941--84917116 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
84916931 TGTAACCCGC
* * *
84916941 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
84916987 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
84917037 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
84917080 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84917117 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:84919544 original size:30 final size:30
Alignment explanation
Indices: 84919500--84919588 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
84919490 CAAAGATAAC
84919500 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
84919529 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
84919559 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
84919589 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:84919548 original size:15 final size:15
Alignment explanation
Indices: 84919500--84919579 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
84919490 CAAAGATAAC
*
84919500 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
84919514 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
84919529 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
84919544 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
84919559 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
84919574 AAGAAA
1 AAGAAA
84919580 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:84919588 original size:15 final size:15
Alignment explanation
Indices: 84919511--84919588 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
84919501 AGAAAACCGA
84919511 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
84919526 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
84919540 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
84919555 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
84919571 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
84919586 ATA
1 ATA
84919589 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:84922646 original size:93 final size:93
Alignment explanation
Indices: 84922534--84922705 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
84922524 GCCCATAAGT
* *
84922534 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84922599 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
84922627 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84922692 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
84922706 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84922701 original size:46 final size:46
Alignment explanation
Indices: 84922526--84922701 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
84922516 TGTAACCCGC
* * *
84922526 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
84922572 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
84922622 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
84922665 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84922702 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:84927380 original size:50 final size:50
Alignment explanation
Indices: 84927326--84927705 Score: 350
Period size: 50 Copynumber: 7.6 Consensus size: 50
84927316 TACGTATAGC
* *
84927326 AGCCTGCACTTAGTACTATACATGCGACCTATCAATCTGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
* * * * * * **
84927376 AGCCTGTACTTAGTACTGCACACGTGACTTACCCATCTGACACACGTAGT
1 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
* ** * * * *
84927426 AGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-CGGGTACGCATAGT
1 AGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACGTAGT
* * * *
84927477 AGCCTACACTTAGTACTACACATGCGACCTATCAATTTGGTACACTTAGT
1 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
* * ** * *
84927527 AGCCTGCACTTAGTACTACACATGTGACTTAACCTTCTGATACATGTAGT
1 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
* * ** * * **
84927577 AGCCTGCACATAGTACTACACACGTGATCGAAGTTAA-CGGGTACGTGTAGT
1 AGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACGTAGT
* * * *
84927628 AGCCTGGACTTAGTACTACACATGCGACCAATCAATCTGGTACATGTAGT
1 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
*
84927678 AGCCTGCACTTAGTACTACACACGTGAC
1 AGCCTGCACTTAGTACTACACATGTGAC
84927706 TCACAACAGG
Statistics
Matches: 260, Mismatches: 64, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
49 6 0.02
50 182 0.70
51 71 0.27
52 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (50 bp):
AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
Found at i:84927591 original size:151 final size:151
Alignment explanation
Indices: 84927314--84927706 Score: 608
Period size: 151 Copynumber: 2.6 Consensus size: 151
84927304 GAAGCTGTCT
* * *
84927314 GGTACGTATAGCAGCCTGCACTTAGTACTATACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACTTAGTAGC
* * * *
84927379 CTGTACTTAGTACTGCACACGTGACTTACCCATCTGACACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGACACACGTAGTAGCCTGCACATAGTACTA
84927444 CACACGTGATCAAAGTTAACG
131 CACACGTGATCAAAGTTAACG
* * *
84927465 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATTTGGTACACTTAGTAGC
1 GGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACTTAGTAGC
* * * *
84927530 CTGCACTTAGTACTACACATGTGACTTAACCTTCTGATACATGTAGTAGCCTGCACATAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGACACACGTAGTAGCCTGCACATAGTACTA
*
84927595 CACACGTGATCGAAGTTAACG
131 CACACGTGATCAAAGTTAACG
* * *
84927616 GGTACGTGTAGTAGCCTGGACTTAGTACTACACATGCGACCAATCAATCTGGTACA-TGTAGTAG
1 GGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACT-TAGTAG
84927680 CCTGCACTTAGTACTACACACGTGACT
65 CCTGCACTTAGTACTACACACGTGACT
84927707 CACAACAGGT
Statistics
Matches: 219, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
150 1 0.00
151 218 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (151 bp):
GGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACTTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGACACACGTAGTAGCCTGCACATAGTACTA
CACACGTGATCAAAGTTAACG
Found at i:84927620 original size:101 final size:101
Alignment explanation
Indices: 84927326--84927704 Score: 277
Period size: 101 Copynumber: 3.8 Consensus size: 101
84927316 TACGTATAGC
* * * * * *
84927326 AGCCTGCACTTAGTACTATACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGTACTTAGTA
1 AGCCTGCACTTAGTACTACACATGCGACCAATCAATCTGATACATGTAGTAGCCTGCACATAGTA
* ** *** * * **
84927391 CTGCACACGTGA-CTTACCCATCTGACACAC-GTAGT
66 CTACACACGTGATCGAAGTTAACGGGTAC-CTGTAGT
* * * * * * *** * *
84927426 AGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-CGGGTACGCATAGTAGCCTACACTTAG
1 AGCCTGCACTTAGTACTACACATGCGA-CCAA-TCAATCTGATACATGTAGTAGCCTGCACATAG
* * ** * **
84927490 TACTACACATGCGA-CCTA-TCAATTTGGTACACT-TAGT
64 TACTACACACGTGATCGAAGTTAA-CGGGTAC-CTGTAGT
* * **
84927527 AGCCTGCACTTAGTACTACACATGTGACTTAA-CCTTCTGATACATGTAGTAGCCTGCACATAGT
1 AGCCTGCACTTAGTACTACACATGCGAC-CAATCAATCTGATACATGTAGTAGCCTGCACATAGT
*
84927591 ACTACACACGTGATCGAAGTTAACGGGTACGTGTAGT
65 ACTACACACGTGATCGAAGTTAACGGGTACCTGTAGT
* * *
84927628 AGCCTGGACTTAGTACTACACATGCGACCAATCAATCTGGTACATGTAGTAGCCTGCACTTAGTA
1 AGCCTGCACTTAGTACTACACATGCGACCAATCAATCTGATACATGTAGTAGCCTGCACATAGTA
84927693 CTACACACGTGA
66 CTACACACGTGA
84927705 CTCACAACAG
Statistics
Matches: 222, Mismatches: 47, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
100 62 0.28
101 154 0.69
102 6 0.03
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
AGCCTGCACTTAGTACTACACATGCGACCAATCAATCTGATACATGTAGTAGCCTGCACATAGTA
CTACACACGTGATCGAAGTTAACGGGTACCTGTAGT
Found at i:84930596 original size:27 final size:27
Alignment explanation
Indices: 84930539--84930598 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
84930529 TTCTCAAAGT
* * *
84930539 AATGATCTGCGGGGCCTTGCCTAGGGT
1 AATGATCTGCGGGGCCTTACCTAGAGC
* *
84930566 AATGATCTGTGGGGCCTTACTTAGAGC
1 AATGATCTGCGGGGCCTTACCTAGAGC
84930593 AATGAT
1 AATGAT
84930599 TCACTATCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (27 bp):
AATGATCTGCGGGGCCTTACCTAGAGC
Found at i:84938400 original size:48 final size:48
Alignment explanation
Indices: 84938329--84938559 Score: 230
Period size: 48 Copynumber: 4.8 Consensus size: 48
84938319 TTTGGGTGAT
* * * *
84938329 ATGTGTGCAAGTGTAAGACCATGTCTGGGACATGGTATCAGCCACGAC
1 ATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCACGAC
* * ** * **
84938377 ATGTGAGCCAGTGTAAAACCATGTTTGGAACATGGCATCAGTGATGTT
1 ATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCACGAC
* * * * * *
84938425 GTGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCAG-CATTGAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA-CGAC
* * * * * *
84938473 ACGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCGTCAGCCTCCAC
1 ATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCACGAC
*
84938521 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 ATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
84938560 GACAATTCAC
Statistics
Matches: 146, Mismatches: 35, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
47 1 0.01
48 144 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCACGAC
Done.