Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 273 of 433
Found at i:84950276 original size:43 final size:43
Alignment explanation
Indices: 84950228--84950396 Score: 175
Period size: 43 Copynumber: 3.9 Consensus size: 43
84950218 GATTATGATA
*
84950228 TGTGATTTCGTGTAAGACCACGTCTGGGATATTGGCATCGATT
1 TGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
* ** *
84950271 TGTGATTTACGAGTAAGACCATTTCTGGGACATTGGCATCG-TA
1 TGTGATTT-CGTGTAAGACCACGTCTGGGACATTGGCATCGATT
* * *
84950314 TATGAGTTT-GTGTAAGACC-CTGTCTGGGATAGTGGCATCGATAT
1 TGTGA-TTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT-T
* * *
84950358 T-TGATTACATGTAAGACCACGTCTGGGACGTTGGCATCG
1 TGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCG
84950397 TACAAGCTTT
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
42 27 0.26
43 42 0.41
44 33 0.32
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (43 bp):
TGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
Found at i:84952646 original size:27 final size:27
Alignment explanation
Indices: 84952616--84952688 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
84952606 ACCCCTAATT
*
84952616 GGTAAAATGACTATTTTGCCCTTATGA
1 GGTAAAATGACTATTTTGCACTTATGA
*
84952643 GGTAAAATGAC-AGTTTTGCACTTATGG
1 GGTAAAATGACTA-TTTTGCACTTATGA
*
84952670 GGTAAAATGACTCTTTTGC
1 GGTAAAATGACTATTTTGC
84952689 GCTTTTATAG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
26 1 0.02
27 40 0.98
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.36
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCACTTATGA
Found at i:84953079 original size:17 final size:18
Alignment explanation
Indices: 84953034--84953101 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
84953024 TTGCATACTA
* *
84953034 TTTACTGTTACTACACTG
1 TTTACTGTTATTGCACTG
* *
84953052 TTTACTATTATTGTACTG
1 TTTACTGTTATTGCACTG
84953070 -TTACTGTTATTGCACTG
1 TTTACTGTTATTGCACTG
*
84953087 TTTACTGTTACTGCA
1 TTTACTGTTATTGCA
84953102 ATGGACCAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
17 15 0.36
18 27 0.64
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (18 bp):
TTTACTGTTATTGCACTG
Found at i:84954630 original size:80 final size:80
Alignment explanation
Indices: 84954546--84954694 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
84954536 TATGGTAACC
* * * *
84954546 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
84954610 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
84954626 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
84954691 CCGG
66 CCGG
84954695 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:84954636 original size:40 final size:38
Alignment explanation
Indices: 84954587--84954694 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
84954577 ATCACGATTT
*
84954587 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
84954627 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
84954667 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
84954695 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:84961937 original size:80 final size:80
Alignment explanation
Indices: 84961853--84962001 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
84961843 TATGGTAACC
* * * *
84961853 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
84961917 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
84961933 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
84961998 CCGG
66 CCGG
84962002 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:84961943 original size:40 final size:38
Alignment explanation
Indices: 84961894--84962001 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
84961884 ATCACGATTT
*
84961894 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
84961934 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
84961974 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
84962002 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:84966037 original size:27 final size:27
Alignment explanation
Indices: 84965943--84966039 Score: 79
Period size: 27 Copynumber: 3.6 Consensus size: 27
84965933 CCCCTAATTG
* * * *
84965943 GTAAAATGACTATTTTACGCTTCT-GA
1 GTAAAATGACTGTTTTGCCCTTATAGA
* *
84965969 GGTAAAATGACTTTTTTGCCCTTATAGG
1 -GTAAAATGACTGTTTTGCCCTTATAGA
** * *
84965997 GTAAAATGGTTGTTTTGCCCTTTTATA
1 GTAAAATGACTGTTTTGCCCTTATAGA
*
84966024 GTAAGATGACTGTTTT
1 GTAAAATGACTGTTTT
84966040 ACCCCTATGT
Statistics
Matches: 55, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (27 bp):
GTAAAATGACTGTTTTGCCCTTATAGA
Found at i:84966384 original size:18 final size:18
Alignment explanation
Indices: 84966361--84966414 Score: 83
Period size: 18 Copynumber: 3.1 Consensus size: 18
84966351 GAACTTGCAT
84966361 ACTGTTTACTGTTACTGC
1 ACTGTTTACTGTTACTGC
*
84966379 ACTG-TTACTATTACTGC
1 ACTGTTTACTGTTACTGC
*
84966396 ATTGTTTACTGTTACTGC
1 ACTGTTTACTGTTACTGC
84966414 A
1 A
84966415 ATGGGCCAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
17 15 0.47
18 17 0.53
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.44
Consensus pattern (18 bp):
ACTGTTTACTGTTACTGC
Found at i:84970849 original size:44 final size:39
Alignment explanation
Indices: 84970751--84970905 Score: 136
Period size: 38 Copynumber: 3.9 Consensus size: 39
84970741 AAATTGAATG
* * ** **
84970751 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG-AGGT
*
84970790 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGAGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-A--AGAGG-T
**
84970833 ATAGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGT
1 ATA-TCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGAGGT
*
84970873 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAA
84970906 ATCGTGATAT
Statistics
Matches: 97, Mismatches: 11, Indels: 17
0.78 0.09 0.14
Matches are distributed among these distances:
38 27 0.28
39 17 0.18
40 16 0.16
41 3 0.03
42 1 0.01
43 9 0.09
44 24 0.25
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGAGGT
Found at i:84978985 original size:80 final size:81
Alignment explanation
Indices: 84978820--84979005 Score: 218
Period size: 80 Copynumber: 2.3 Consensus size: 81
84978810 AATTGAATGA
* * *
84978820 TATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGTCCCGAAGACATTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
84978885 TTGTGCTAGTGGCTAC
66 TTGTGCGAGTGGCTAC
* * * *
84978901 -ATCCGGGCTAAGTCCTGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-A
1 TATCCGGGCTAAGTCCCGAAGACATTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
* *
84978964 TTCGTGCGA-T-TCATTC
66 TT-GTGCGAGTGGC-TAC
* *
84978980 TATCCGGGCTAAGACCCGAAGGCATT
1 TATCCGGGCTAAGTCCCGAAGACATT
84979006 TGTGCAAATC
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.01
79 6 0.07
80 81 0.92
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
TATCCGGGCTAAGTCCCGAAGACATTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCGAGTGGCTAC
Found at i:84979024 original size:40 final size:39
Alignment explanation
Indices: 84978819--84979025 Score: 125
Period size: 40 Copynumber: 5.2 Consensus size: 39
84978809 AAATTGAATG
* * * *
84978819 ATATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGCATT--TG-TGCAAATCAT
* * * *
84978859 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT--CAT
* * * * * * *
84978899 ACATCCGGGCTAAGTCCTG-AGGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAATCA-T
* * *
84978939 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGATTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCA-T
* *
84978979 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCAT
84979018 GATATCCG
1 -ATATCCG
84979026 AGTTAAGTCC
Statistics
Matches: 130, Mismatches: 29, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 4 0.03
40 117 0.90
41 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCAT
Found at i:84986062 original size:30 final size:30
Alignment explanation
Indices: 84986028--84986087 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
84986018 TTCTTTCATA
84986028 AGTATGAACTAAACCCCTAAATAACTAAGG
1 AGTATGAACTAAACCCCTAAATAACTAAGG
*
84986058 AGTATGAACTAAACCCCTTAATAACTAAGG
1 AGTATGAACTAAACCCCTAAATAACTAAGG
84986088 GGAATGAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (30 bp):
AGTATGAACTAAACCCCTAAATAACTAAGG
Found at i:84986095 original size:30 final size:30
Alignment explanation
Indices: 84986031--84986095 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
84986021 TTTCATAAGT
*
84986031 ATGAACTAAACCCCTAAATAACTAAGGAGT
1 ATGAACTAAACCCCTAAATAACTAAGGAGA
* *
84986061 ATGAACTAAACCCCTTAATAACTAAGGGGA
1 ATGAACTAAACCCCTAAATAACTAAGGAGA
84986091 ATGAA
1 ATGAA
84986096 ACCTAAGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.46, C:0.18, G:0.15, T:0.20
Consensus pattern (30 bp):
ATGAACTAAACCCCTAAATAACTAAGGAGA
Found at i:85014277 original size:46 final size:46
Alignment explanation
Indices: 85014206--85014375 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 46
85014196 GCCCACAAGC
** * *
85014206 GAACTCGGACTCAACTCAATTAGCTCGGGTGTTTTCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGTTTACATCCATAAGT
* * * *
85014252 GAACTCAGACTCAACTCAACGAGCTCGGATACCTAGTTACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGGAT--GT--TTACATCCATAAGT
** * **
85014299 GAACTCGGACTCAACTCAACGAATTCGGACGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGTTTACATCCATAAGT
*
85014345 GAACTCGGACTCAACTCAACGATCTCGGATG
1 GAACTCGGACTCAACTCAACGAGCTCGGATG
85014376 CCTAAATATC
Statistics
Matches: 97, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 3 0.03
46 54 0.56
47 26 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGTTTACATCCATAAGT
Found at i:85014313 original size:93 final size:93
Alignment explanation
Indices: 85014205--85014379 Score: 251
Period size: 93 Copynumber: 1.9 Consensus size: 93
85014195 CGCCCACAAG
** * ** **
85014205 CGAACTCGGACTCAACTCAATTAGCTCGGGTGTTTTCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAACTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
85014270 ACGAGCTCGGATACCTAGTTACATCTCA
66 ACGAGCTCGGATACCTAGTTACATCTCA
* *
85014298 CGAACTCGGACTCAACTCAACGAATTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAACTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
85014363 ACGATCTCGGATGCCTA
66 ACGAGCTCGGATACCTA
85014380 AATATCCGAA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAACTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATACCTAGTTACATCTCA
Found at i:85027098 original size:21 final size:22
Alignment explanation
Indices: 85027065--85027108 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
85027055 ATAAAATAAT
*
85027065 AAACATATTTAA-TAATACATGA
1 AAACATATGTAATTAATA-ATGA
85027087 AAACATA-GTAATTAATAATGA
1 AAACATATGTAATTAATAATGA
85027108 A
1 A
85027109 TTTTGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATGTAATTAATAATGA
Found at i:85027286 original size:30 final size:29
Alignment explanation
Indices: 85027233--85027294 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
85027223 TAATATGAAA
85027233 ATAATAATAATAATATACCTGAAA-ATATAT
1 ATAATAATAATAATATA-CTGAAATA-ATAT
85027263 ATAATAGATAATAATAATA-TGAAATAATAT
1 ATAATA-ATAATAAT-ATACTGAAATAATAT
85027293 AT
1 AT
85027295 TTTAAAATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
30 17 0.59
31 9 0.31
32 3 0.10
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (29 bp):
ATAATAATAATAATATACTGAAATAATAT
Found at i:85027320 original size:8 final size:8
Alignment explanation
Indices: 85027307--85027489 Score: 75
Period size: 8 Copynumber: 23.1 Consensus size: 8
85027297 TAAAATGTAA
85027307 AATAATAT
1 AATAATAT
85027315 AATAATAT
1 AATAATAT
*
85027323 AAAAATAT
1 AATAATAT
85027331 -ATAA-AT
1 AATAATAT
* *
85027337 ATTATGTGAT
1 AATA-AT-AT
85027347 AA-AA-AT
1 AATAATAT
85027353 -ATAATAT
1 AATAATAT
85027360 AATAA-AT
1 AATAATAT
*
85027367 AATAA-GT
1 AATAATAT
*
85027374 AATGATAT
1 AATAATAT
** *
85027382 -ATGTTAA
1 AATAATAT
85027389 AAT-ATAT
1 AATAATAT
*
85027396 ATTAATAT
1 AATAATAT
* *
85027404 GATAATAG
1 AATAATAT
*
85027412 AAAAATAT
1 AATAATAT
85027420 GAAGTAATAT
1 -AA-TAATAT
85027430 AAT-ATAAT
1 AATAAT-AT
85027438 AA-AATAT
1 AATAATAT
85027445 AAGTAA-AT
1 AA-TAATAT
85027453 AATAATAT
1 AATAATAT
*
85027461 AAAATATAT
1 AATA-ATAT
85027470 AATACATAT
1 AATA-ATAT
85027479 ATATATATAT
1 A-ATA-ATAT
85027489 A
1 A
85027490 TATTAAAATA
Statistics
Matches: 131, Mismatches: 25, Indels: 36
0.68 0.13 0.19
Matches are distributed among these distances:
5 1 0.01
6 6 0.05
7 37 0.28
8 52 0.40
9 19 0.15
10 16 0.12
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (8 bp):
AATAATAT
Found at i:85027457 original size:89 final size:88
Alignment explanation
Indices: 85027261--85027459 Score: 206
Period size: 89 Copynumber: 2.2 Consensus size: 88
85027251 CTGAAAATAT
* * * *
85027261 ATATAATAGATAATAATAATATGAAATAATATATTTTAAAATGTAAAATAATATAATAATATAAA
1 ATATAAT--ATAATAATAATAAGAAATAATATATGTTAAAATATAAAATAATATAATAATAGAAA
* * *
85027326 AATATATAAATATTATGTGATAAAA
64 AATATATAAATATAATATAATAAAA
* * * * *
85027351 ATATAATATAATAAATAATAAGTAATGATATATGTTAAAATATATATTAATATGATAATAGAAAA
1 ATATAATATAAT-AATAATAAGAAATAATATATGTTAAAATATAAAATAATATAATAATAGAAAA
85027416 ATATGA-AGTAATATAATATAAT-AAA
65 ATAT-ATA--AATATAATATAATAAAA
85027441 ATATAAGTA-AATAATAATA
1 ATATAA-TATAATAATAATA
85027460 TAAAATATAT
Statistics
Matches: 92, Mismatches: 12, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
88 5 0.05
89 55 0.60
90 20 0.22
91 12 0.13
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.35
Consensus pattern (88 bp):
ATATAATATAATAATAATAAGAAATAATATATGTTAAAATATAAAATAATATAATAATAGAAAAA
TATATAAATATAATATAATAAAA
Found at i:85027520 original size:25 final size:27
Alignment explanation
Indices: 85027475--85027526 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
85027465 TATATAATAC
*
85027475 ATATATATATATATATATTAAAATAAA
1 ATATATATATAGATATATTAAAATAAA
85027502 ATATATATATAGA-AT-TTAAAATAAA
1 ATATATATATAGATATATTAAAATAAA
85027527 TAAGCTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 10 0.42
26 2 0.08
27 12 0.50
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (27 bp):
ATATATATATAGATATATTAAAATAAA
Found at i:85029509 original size:206 final size:206
Alignment explanation
Indices: 85029136--85029683 Score: 891
Period size: 206 Copynumber: 2.7 Consensus size: 206
85029126 AAATCTGCTT
*
85029136 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
85029201 GCGAAAACCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * ** *
85029266 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
85029331 GAGATGCCAAA
196 GAGATGCCAAA
* *
85029342 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * *
85029407 ATGAAAGCTAAATCAGCTATGAT-TTTGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATG-TCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
*
85029471 TGGATCTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATAT
130 TGGATCTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATAT
85029536 GGAGATGCCAAA
195 GGAGATGCCAAA
*
85029548 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
**
85029613 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
85029678 GGATCT
131 GGATCT
85029684 TTCTTCAGCC
Statistics
Matches: 312, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
205 1 0.00
206 310 0.99
207 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
GAGATGCCAAA
Found at i:85030586 original size:1 final size:1
Alignment explanation
Indices: 85030582--85030674 Score: 105
Period size: 1 Copynumber: 93.0 Consensus size: 1
85030572 CTCTTCTCTC
* * * * *
85030582 TTTTTTCTTTTTTCTTTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
85030647 TTTGTTTTCTGTTTTTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
85030675 GATTTTCGAA
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 74 1.00
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.90
Consensus pattern (1 bp):
T
Found at i:85030591 original size:23 final size:22
Alignment explanation
Indices: 85030564--85030615 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
85030554 TCCATTATTC
85030564 TCTTTTTCCTCTTCTCTCTTTTT
1 TCTTTTTCCTCTTCTCTC-TTTT
* * * *
85030587 TCTTTTTTCTTTTTTTTCTTTT
1 TCTTTTTCCTCTTCTCTCTTTT
85030609 TCTTTTT
1 TCTTTTT
85030616 TTTTTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (22 bp):
TCTTTTTCCTCTTCTCTCTTTT
Found at i:85030600 original size:15 final size:14
Alignment explanation
Indices: 85030580--85030674 Score: 118
Period size: 14 Copynumber: 6.5 Consensus size: 14
85030570 TCCTCTTCTC
*
85030580 TCTTTTTTCTTTTT
1 TCTTTTTTTTTTTT
85030594 TCTTTTTTTTCTTTT
1 TCTTTTTTTT-TTTT
85030609 TCTTTTTTTTTTTTT
1 TC-TTTTTTTTTTTT
*
85030624 TTTTTTTTTTTTTT
1 TCTTTTTTTTTTTT
*
85030638 TTTTGTTTTTTTGTTT
1 TCTT-TTTTTTT-TTT
*
85030654 TCTGTTTTTTTTTT
1 TCTTTTTTTTTTTT
85030668 TCTTTTT
1 TCTTTTT
85030675 GATTTTCGAA
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
14 34 0.47
15 25 0.35
16 13 0.18
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.89
Consensus pattern (14 bp):
TCTTTTTTTTTTTT
Found at i:85037535 original size:23 final size:24
Alignment explanation
Indices: 85037494--85037540 Score: 87
Period size: 23 Copynumber: 2.0 Consensus size: 24
85037484 ACAGGAGACG
85037494 GAGTAAAACTCCGGAGGATGATCC
1 GAGTAAAACTCCGGAGGATGATCC
85037518 GAGTAAAACT-CGGAGGATGATCC
1 GAGTAAAACTCCGGAGGATGATCC
85037541 TCACCTTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.34, C:0.19, G:0.30, T:0.17
Consensus pattern (24 bp):
GAGTAAAACTCCGGAGGATGATCC
Found at i:85040027 original size:71 final size:71
Alignment explanation
Indices: 85039943--85040106 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
85039933 CGATTTGTCT
*
85039943 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATACGACCCAGCTACATTTAT
85040008 CTTTCA
66 CTTTCA
* *
85040014 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATACGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATACGACCCAGCTACATTTAT
85040079 CTTTCA
66 CTTTCA
85040085 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
85040107 GATACATCTC
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATACGACCCAGCTACATTTAT
CTTTCA
Found at i:85040144 original size:71 final size:70
Alignment explanation
Indices: 85039943--85040140 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
85039933 CGATTTGTCT
* * * * *
85039943 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATACGACCTAGCTACATTTAT
85040008 CTTTCA
65 CTTTCA
* * *
85040014 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATACGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATACGACCTAGCTACATTTAT
85040079 CTTTCA
65 CTTTCA
* **
85040085 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATACGACCTAGCTAC
85040141 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 93 0.79
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATACGACCTAGCTACATTTATC
TTTCA
Found at i:85044922 original size:28 final size:28
Alignment explanation
Indices: 85044853--85044953 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
85044843 GACAAGATTG
* * * *
85044853 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
85044883 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
85044911 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
85044940 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85044954 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:85052877 original size:28 final size:28
Alignment explanation
Indices: 85052808--85052908 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
85052798 GACAAGATTG
* * * *
85052808 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
85052838 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
85052866 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
85052895 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85052909 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:85058681 original size:66 final size:68
Alignment explanation
Indices: 85058603--85058789 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
85058593 TAGTACCACT
*
85058603 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
85058665 CACG
65 CACG
85058669 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
85058734 ATCACG
63 ATCACG
85058740 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
85058790 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:85058714 original size:71 final size:71
Alignment explanation
Indices: 85058626--85058789 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
85058616 CGATTTGTCT
85058626 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85058691 CTTTCA
66 CTTTCA
85058697 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85058762 CTTTCA
66 CTTTCA
85058768 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
85058790 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:85058827 original size:71 final size:70
Alignment explanation
Indices: 85058626--85058823 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
85058616 CGATTTGTCT
* * *
85058626 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
85058691 CTTTCA
65 CTTTCA
* * *
85058697 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
85058762 CTTTCA
65 CTTTCA
* *
85058768 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
85058824 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:85063211 original size:21 final size:22
Alignment explanation
Indices: 85063178--85063221 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
85063168 ATAAAATAAT
*
85063178 AAACATATTTAA-TAATACATGA
1 AAACATATGTAATTAATA-ATGA
85063200 AAACATA-GTAATTAATAATGA
1 AAACATATGTAATTAATAATGA
85063221 A
1 A
85063222 TTTTGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATGTAATTAATAATGA
Found at i:85063445 original size:8 final size:8
Alignment explanation
Indices: 85063428--85063610 Score: 82
Period size: 8 Copynumber: 23.1 Consensus size: 8
85063418 TAAAATGTAA
*
85063428 AATAACAT
1 AATAATAT
85063436 AATAATAT
1 AATAATAT
85063444 AA-AA-AT
1 AATAATAT
85063450 -ATAATAT
1 AATAATAT
85063457 AATAA-AT
1 AATAATAT
*
85063464 AATAA-GT
1 AATAATAT
*
85063471 AATGATAT
1 AATAATAT
** *
85063479 -ATGTTAA
1 AATAATAT
85063486 AAT-ATAT
1 AATAATAT
*
85063493 ATTAATAT
1 AATAATAT
* *
85063501 GATAATAG
1 AATAATAT
*
85063509 AAAAATAT
1 AATAATAT
85063517 GAAGTAATAT
1 -AA-TAATAT
85063527 AAT-ATAAT
1 AATAAT-AT
85063535 AA-AATAT
1 AATAATAT
85063542 AAGTAA-AT
1 AA-TAATAT
85063550 AATAATAT
1 AATAATAT
*
85063558 AAAATATAT
1 AATA-ATAT
85063567 AATACATAT
1 AATA-ATAT
85063576 -ATATATAT
1 AATA-ATAT
* *
85063584 ATATATTAA
1 A-ATAATAT
*
85063593 AATAAAAT
1 AATAATAT
85063601 AATATATAT
1 AATA-ATAT
85063610 A
1 A
85063611 CAATTTAAAA
Statistics
Matches: 132, Mismatches: 26, Indels: 33
0.69 0.14 0.17
Matches are distributed among these distances:
5 1 0.01
6 4 0.03
7 34 0.26
8 61 0.46
9 24 0.18
10 8 0.06
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (8 bp):
AATAATAT
Found at i:85063453 original size:13 final size:14
Alignment explanation
Indices: 85063437--85063610 Score: 58
Period size: 14 Copynumber: 12.2 Consensus size: 14
85063427 AAATAACATA
85063437 ATAATATAA-AAAT
1 ATAATATAATAAAT
85063450 ATAATATAATAAAT
1 ATAATATAATAAAT
* *
85063464 AATAA-GTAATGATAT
1 -ATAATATAAT-AAAT
** * *
85063479 ATGTTAAAATATAT
1 ATAATATAATAAAT
* *
85063493 ATTAATATGATAATAGA
1 A-TAATATAATAA-A-T
*
85063510 AAAATATGAAGT-AAT
1 ATAATAT-AA-TAAAT
85063525 ATAATATAATAAA-
1 ATAATATAATAAAT
*
85063538 AT-ATA-AGTAAAT
1 ATAATATAATAAAT
85063550 AATAATATAA-AATAT
1 -ATAATATAATAA-AT
* *
85063565 ATAATACATATATAT
1 ATAATATA-ATAAAT
*
85063580 ATATATATATTAAA-
1 ATA-ATATAATAAAT
* *
85063594 ATAAAATAATATAT
1 ATAATATAATAAAT
85063608 ATA
1 ATA
85063611 CAATTTAAAA
Statistics
Matches: 116, Mismatches: 26, Indels: 37
0.65 0.15 0.21
Matches are distributed among these distances:
11 5 0.04
12 3 0.03
13 21 0.18
14 37 0.32
15 34 0.29
16 12 0.10
17 3 0.03
18 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.35
Consensus pattern (14 bp):
ATAATATAATAAAT
Found at i:85063506 original size:65 final size:66
Alignment explanation
Indices: 85063381--85063530 Score: 162
Period size: 65 Copynumber: 2.3 Consensus size: 66
85063371 ATGAAAATAT
* * *
85063381 ATATAATAGATAATAATAATATGAAATAATATATTGTTAAAATGTAAAATAACATAATAATATAA
1 ATATAATA-ATAATAATAATAAGAAATAATATATTGTTAAAATATAAAATAACATAATAATAGAA
85063446 AA
65 AA
* * * * * *
85063448 ATATAAT-ATAATAAATAATAAGTAATGATATA-TGTTAAAATATATATTAATATGATAATAGAA
1 ATATAATAATAAT-AATAATAAGAAATAATATATTGTTAAAATATAAAATAACATAATAATAGAA
85063511 AA
65 AA
85063513 ATATGAAGTAAT-ATAATA
1 ATAT-AA-TAATAATAATA
85063531 TAATAAAATA
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
65 36 0.51
66 22 0.31
67 10 0.14
68 2 0.03
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.34
Consensus pattern (66 bp):
ATATAATAATAATAATAATAAGAAATAATATATTGTTAAAATATAAAATAACATAATAATAGAAA
A
Found at i:85063534 original size:10 final size:10
Alignment explanation
Indices: 85063521--85063610 Score: 60
Period size: 10 Copynumber: 8.7 Consensus size: 10
85063511 AAATATGAAG
85063521 TAATATAATA
1 TAATATAATA
*
85063531 TAATAAAATA
1 TAATATAATA
85063541 TAAGTA-AATAA
1 TAA-TATAAT-A
*
85063552 TAATATAAAA
1 TAATATAATA
85063562 T-ATATAATA
1 TAATATAATA
*
85063571 CATATATATATA
1 TA-ATATA-ATA
*
85063583 TATATATTAAAA
1 TA-ATA-TAATA
*
85063595 TAAAATAATA
1 TAATATAATA
85063605 T-ATATA
1 TAATATA
85063611 CAATTTAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
9 11 0.17
10 24 0.38
11 15 0.23
12 12 0.19
13 2 0.03
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (10 bp):
TAATATAATA
Found at i:85063540 original size:15 final size:16
Alignment explanation
Indices: 85063434--85063610 Score: 75
Period size: 17 Copynumber: 10.7 Consensus size: 16
85063424 GTAAAATAAC
85063434 ATAATAATATAA-A-A
1 ATAATAATATAATATA
85063448 AT-ATAATATAATAAATA
1 ATAATAATATAAT--ATA
*
85063465 ATAAGTAATGATATATGTTA
1 ATAA-TAAT-ATA-AT-ATA
*
85063485 A-AATATATATTAATATG
1 ATAATA-ATA-TAATATA
* *
85063502 ATAATAGA-AAAATATG
1 ATAATA-ATATAATATA
*
85063518 A-AGTAATATAATATA
1 ATAATAATATAATATA
85063533 ATAA-AATATAAGTA-A
1 ATAATAATATAA-TATA
*
85063548 ATAATAATATAAAATA
1 ATAATAATATAATATA
85063564 TATAATACATAT-ATATA
1 -ATAATA-ATATAATATA
* * *
85063581 TATATATATTAAAATAAA
1 -ATA-ATAATATAATATA
85063599 ATAATATATATA
1 ATAATA-ATATA
85063611 CAATTTAAAA
Statistics
Matches: 125, Mismatches: 17, Indels: 39
0.69 0.09 0.22
Matches are distributed among these distances:
13 9 0.07
14 3 0.02
15 23 0.18
16 22 0.18
17 28 0.22
18 22 0.18
19 10 0.08
20 6 0.05
21 2 0.02
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.35
Consensus pattern (16 bp):
ATAATAATATAATATA
Found at i:85063557 original size:41 final size:42
Alignment explanation
Indices: 85063392--85063570 Score: 115
Period size: 39 Copynumber: 4.6 Consensus size: 42
85063382 TATAATAGAT
**
85063392 AATAATAATATGAAATAATAT-AT-TGTTAAAATGTAA-AA-TA
1 AATAATAATATGAAATAATATAATATAATAAAA--TAATAAGTA
85063432 ACATAATAATAT-AAA-AATATAATATAAT-AAATAATAAGT-
1 A-ATAATAATATGAAATAATATAATATAATAAAATAATAAGTA
* * * *
85063471 AATGAT-ATATGTTAA-AATAT-ATAT--TAATATGATAA-TA
1 AATAATAATATG-AAATAATATAATATAATAAAATAATAAGTA
* *
85063508 GA-AA-AATATGAAGTAATATAATATAATAAAAT-ATAAGTA
1 AATAATAATATGAAATAATATAATATAATAAAATAATAAGTA
*
85063547 AATAATAATATAAAAT-ATATAATA
1 AATAATAATATGAAATAATATAATA
85063571 CATATATATA
Statistics
Matches: 108, Mismatches: 14, Indels: 34
0.69 0.09 0.22
Matches are distributed among these distances:
35 1 0.01
36 13 0.12
37 16 0.15
38 15 0.14
39 23 0.21
40 20 0.19
41 20 0.19
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.34
Consensus pattern (42 bp):
AATAATAATATGAAATAATATAATATAATAAAATAATAAGTA
Found at i:85063583 original size:26 final size:25
Alignment explanation
Indices: 85063440--85063610 Score: 94
Period size: 26 Copynumber: 6.8 Consensus size: 25
85063430 TAACATAATA
*
85063440 ATATAAAAATATA-ATATA-ATAAAT
1 ATATAATAATATATATATATA-AAAT
*
85063464 A-ATAAGTAATGATATATGT-TAAAAT
1 ATATAA-TAAT-ATATATATATAAAAT
* *
85063489 ATATATTAATATGATA-ATAGAAAA-
1 ATATAATAATAT-ATATATATAAAAT
85063513 ATATGAAGTAATATA-ATATAATAAAAT
1 ATAT-AA-TAATATATATAT-ATAAAAT
*
85063540 ATA-AGTAA-ATA-ATAATATAAAAT
1 ATATAATAATATATAT-ATATAAAAT
*
85063563 ATATAATACATATATATATAT-ATAT
1 ATATAATA-ATATATATATATAAAAT
* *
85063588 ATTAAAATAAAATAATATATATA
1 A-TATAATAATAT-ATATATATA
85063611 CAATTTAAAA
Statistics
Matches: 115, Mismatches: 12, Indels: 37
0.70 0.07 0.23
Matches are distributed among these distances:
23 19 0.17
24 20 0.17
25 32 0.28
26 39 0.34
27 5 0.04
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATAATAATATATATATATAAAAT
Found at i:85063640 original size:25 final size:27
Alignment explanation
Indices: 85063589--85063646 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
85063579 TATATATATA
*
85063589 TTAAAATAAAATAATATATATACAA-T
1 TTAAAATAAAATAATATATAAACAATT
*
85063615 TTAAAAT-AAATAAGT-TATAAATAATT
1 TTAAAATAAAATAA-TATATAAACAATT
85063641 TTAAAA
1 TTAAAA
85063647 GGGATAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (27 bp):
TTAAAATAAAATAATATATAAACAATT
Found at i:85065204 original size:39 final size:39
Alignment explanation
Indices: 85065142--85065326 Score: 289
Period size: 39 Copynumber: 4.7 Consensus size: 39
85065132 TTCCAACCCA
** * *
85065142 AATGCCTTCGAAACTTAGTCCGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
85065181 AATGCCTTCAGGACTTTGCCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
85065220 AATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
85065259 AATGCCTTCGGGACTTAACCCAGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
85065298 AATGCCTTCGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
85065327 ATCTCACACA
Statistics
Matches: 132, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 132 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:85068857 original size:206 final size:206
Alignment explanation
Indices: 85068485--85069037 Score: 865
Period size: 206 Copynumber: 2.7 Consensus size: 206
85068475 AAATCTGCTT
85068485 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * *
85068550 GCGAAAACCAAATCAGCTATG-TCTTAGATTTTTTCCTTGTAAGCACAAGGATACCAAACCATCT
66 GTGAAAGCCAAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
* * * * * *
85068614 TGGATCTGCTTTAGTCTAATCATTTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
130 TGGATCTGCTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTATCTGCCCTCCGTCGAATAT
*
85068679 GGAGACGCCAAA
195 GGAAACGCCAAA
* * * *
85068691 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
85068756 GTGAAAGCTAAATCAGCTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGATTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
85068821 GGATCTGCTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTATCTGCTCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
85068886 GAAACGCCAAA
196 GAAACGCCAAA
* *
85068897 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGGTTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
85068962 ATGAAAGCCAAATCAGCTATGACTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGATTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
85069027 GGATCTTGCTT
131 GGATC-TGCTT
85069038 TAGCCAGATC
Statistics
Matches: 314, Mismatches: 31, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
206 308 0.98
207 6 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGATTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
GAAACGCCAAA
Found at i:85069917 original size:8 final size:7
Alignment explanation
Indices: 85069908--85070025 Score: 73
Period size: 7 Copynumber: 15.7 Consensus size: 7
85069898 GGCCTCTCTA
85069908 TTTTTCT
1 TTTTTCT
85069915 ATTTTTCCT
1 -TTTTT-CT
* *
85069924 CTTCTCT
1 TTTTTCT
85069931 CTTTTTTCT
1 -TTT-TTCT
85069940 TTTTTCTT
1 TTTTTC-T
85069948 TTTTTCT
1 TTTTTCT
85069955 TTTTTCT
1 TTTTTCT
85069962 TTTTT-T
1 TTTTTCT
85069968 GTTTTT-T
1 -TTTTTCT
85069975 TTTTT-T
1 TTTTTCT
85069981 TTTTGTCTTT
1 TTTT-TC--T
85069991 TTTTTCT
1 TTTTTCT
85069998 GTTTTTCT
1 -TTTTTCT
85070006 GTTTGTT-T
1 -TTT-TTCT
*
85070014 TCTTTCT
1 TTTTTCT
85070021 TTTTT
1 TTTTT
85070026 GATTTTCGAA
Statistics
Matches: 92, Mismatches: 6, Indels: 25
0.75 0.05 0.20
Matches are distributed among these distances:
6 13 0.14
7 33 0.36
8 32 0.35
9 9 0.10
10 5 0.05
ACGTcount: A:0.01, C:0.14, G:0.04, T:0.81
Consensus pattern (7 bp):
TTTTTCT
Found at i:85069935 original size:24 final size:22
Alignment explanation
Indices: 85069902--85069966 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 22
85069892 CACCTTGGCC
85069902 TCTCTATTTTTCTATTTTTCCTCTT
1 TCTCT-TTTTTCT-TTTTTCCTC-T
* *
85069927 CTCTCTTTTTTCTTTTTTCTTTT
1 -TCTCTTTTTTCTTTTTTCCTCT
*
85069950 TTTCTTTTTTCTTTTTT
1 TCTCTTTTTTCTTTTTT
85069967 TGTTTTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 16 0.44
23 1 0.03
24 7 0.19
25 7 0.19
26 5 0.14
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (22 bp):
TCTCTTTTTTCTTTTTTCCTCT
Found at i:85069940 original size:7 final size:7
Alignment explanation
Indices: 85069930--85070025 Score: 83
Period size: 7 Copynumber: 13.1 Consensus size: 7
85069920 TCCTCTTCTC
85069930 TCTTTTT
1 TCTTTTT
85069937 TCTTTTT
1 TCTTTTT
85069944 TCTTTTTT
1 TC-TTTTT
85069952 TCTTTTT
1 TCTTTTT
85069959 TCTTTTT
1 TCTTTTT
85069966 T-TGTTTT
1 TCT-TTTT
85069973 T-TTTTT
1 TCTTTTT
85069979 T-TTTTT
1 TCTTTTT
85069985 GTCTTTTTTT
1 -TC--TTTTT
85069995 TCTGTTTT
1 TCT-TTTT
85070003 TCTGTTTGT
1 TCT-TTT-T
*
85070012 T-TTCTT
1 TCTTTTT
85070018 TCTTTTT
1 TCTTTTT
85070025 T
1 T
85070026 GATTTTCGAA
Statistics
Matches: 78, Mismatches: 2, Indels: 18
0.80 0.02 0.18
Matches are distributed among these distances:
6 13 0.17
7 37 0.47
8 19 0.24
9 4 0.05
10 5 0.06
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.84
Consensus pattern (7 bp):
TCTTTTT
Found at i:85070003 original size:1 final size:1
Alignment explanation
Indices: 85069932--85069995 Score: 65
Period size: 1 Copynumber: 64.0 Consensus size: 1
85069922 CTCTTCTCTC
* * * * * * *
85069932 TTTTTTCTTTTTTCTTTTTTTCTTTTTTCTTTTTTTGTTTTTTTTTTTTTTTTGTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
85069996 CTGTTTTTCT
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (1 bp):
T
Found at i:85079584 original size:46 final size:46
Alignment explanation
Indices: 85079518--85079635 Score: 173
Period size: 46 Copynumber: 2.6 Consensus size: 46
85079508 TACATCTCAC
* *
85079518 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
* * *
85079564 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
* *
85079610 GAACTCGGACTCAACTTAATGAGCTC
1 GAACTCGGACTCAACTCAACGAGCTC
85079636 AGATGCCTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
Found at i:85080466 original size:15 final size:15
Alignment explanation
Indices: 85080446--85080476 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
85080436 AATCACTTAC
85080446 GAGGATTTCAAAAAT
1 GAGGATTTCAAAAAT
85080461 GAGGATTTCAAAAAT
1 GAGGATTTCAAAAAT
85080476 G
1 G
85080477 TAAAGAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.26
Consensus pattern (15 bp):
GAGGATTTCAAAAAT
Found at i:85080493 original size:17 final size:17
Alignment explanation
Indices: 85080471--85080508 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
85080461 GAGGATTTCA
85080471 AAAATGTAAAGAACATT
1 AAAATGTAAAGAACATT
85080488 AAAATGTAAAGAACATT
1 AAAATGTAAAGAACATT
85080505 AAAA
1 AAAA
85080509 GTGTTGAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21
Consensus pattern (17 bp):
AAAATGTAAAGAACATT
Found at i:85081235 original size:16 final size:16
Alignment explanation
Indices: 85081216--85081250 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
85081206 ATGGATTGTG
85081216 ATTAGACTAGATGTTC
1 ATTAGACTAGATGTTC
85081232 ATTAGACTAGATGTTC
1 ATTAGACTAGATGTTC
85081248 ATT
1 ATT
85081251 TAGCATGGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (16 bp):
ATTAGACTAGATGTTC
Found at i:85082963 original size:40 final size:40
Alignment explanation
Indices: 85082903--85083046 Score: 209
Period size: 40 Copynumber: 3.6 Consensus size: 40
85082893 GGATGATAAT
* * *
85082903 CGGGCTAAGCCCCGACGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATA-TC
*
85082943 TGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
85082983 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATC
*
85083023 CGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGCCCCGAAGGCATTTG
85083047 AGTGAGTAGC
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 95 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:85086516 original size:28 final size:29
Alignment explanation
Indices: 85086484--85086582 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
85086474 ATAATAAGCC
*
85086484 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
85086512 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
85086540 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
85086569 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85086583 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:85094359 original size:28 final size:28
Alignment explanation
Indices: 85094327--85094453 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
85094317 ATAATAAGCC
*
85094327 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCGAACT
*
85094355 CGCACAGTTAGTGCTATATAATCGAACT
1 CGCACACTTAGTGCTATATAATCGAACT
* *
85094383 CGCACAGTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCGAACT
* * *
85094411 CGCACACTTAGTGCTATACAATTTGAACC
1 CGCACACTTAGTGCTATATAA-TCGAACT
85094440 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85094454 CAATCTCATG
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
28 70 0.79
29 19 0.21
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCGAACT
Found at i:85097222 original size:71 final size:71
Alignment explanation
Indices: 85097138--85097301 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
85097128 CGATTTGTCT
85097138 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85097203 CTTTCA
66 CTTTCA
85097209 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85097274 CTTTCA
66 CTTTCA
85097280 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
85097302 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:85097339 original size:71 final size:70
Alignment explanation
Indices: 85097138--85097335 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
85097128 CGATTTGTCT
* * * *
85097138 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
85097203 CTTTCA
65 CTTTCA
* * * *
85097209 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
85097274 CTTTCA
65 CTTTCA
* *
85097280 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
85097336 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:85104805 original size:71 final size:71
Alignment explanation
Indices: 85104721--85104884 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
85104711 CGATTTGTCT
85104721 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85104786 CTTTCA
66 CTTTCA
85104792 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85104857 CTTTCA
66 CTTTCA
85104863 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
85104885 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:85104922 original size:71 final size:70
Alignment explanation
Indices: 85104721--85104918 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
85104711 CGATTTGTCT
* * * *
85104721 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
85104786 CTTTCA
65 CTTTCA
* * * *
85104792 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
85104857 CTTTCA
65 CTTTCA
* *
85104863 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
85104919 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:85117575 original size:40 final size:40
Alignment explanation
Indices: 85117516--85117702 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
85117506 CATTGGAATG
* * * *
85117516 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
85117556 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
85117596 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
85117636 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
85117676 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
85117703 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:85117618 original size:80 final size:80
Alignment explanation
Indices: 85117516--85117669 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
85117506 CATTGGAATG
* * ** *
85117516 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
85117581 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
85117596 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
85117661 ATCGTGCGA
66 ATCGTGCGA
85117670 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:85117684 original size:80 final size:80
Alignment explanation
Indices: 85117520--85117702 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
85117510 GGAATGATAT
* ** * *
85117520 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
85117585 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
85117600 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
85117665 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
85117680 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
85117703 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:85117722 original size:80 final size:80
Alignment explanation
Indices: 85117520--85117737 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
85117510 GGAATGATAT
* * * * * * * *
85117520 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
85117584 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
85117600 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
85117665 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
85117680 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
85117738 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:85125621 original size:40 final size:40
Alignment explanation
Indices: 85125562--85125748 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
85125552 CATTGGAATG
* * * *
85125562 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
85125602 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
85125642 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
85125682 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
85125722 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
85125749 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:85125664 original size:80 final size:80
Alignment explanation
Indices: 85125562--85125715 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
85125552 CATTGGAATG
* * ** *
85125562 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
85125627 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
85125642 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
85125707 ATCGTGCGA
66 ATCGTGCGA
85125716 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:85125730 original size:80 final size:80
Alignment explanation
Indices: 85125566--85125748 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
85125556 GGAATGATAT
* ** * *
85125566 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
85125631 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
85125646 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
85125711 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
85125726 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
85125749 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:85125768 original size:80 final size:80
Alignment explanation
Indices: 85125566--85125783 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
85125556 GGAATGATAT
* * * * * * * *
85125566 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
85125630 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
85125646 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
85125711 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
85125726 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
85125784 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:85127311 original size:27 final size:28
Alignment explanation
Indices: 85127281--85127491 Score: 94
Period size: 27 Copynumber: 7.8 Consensus size: 28
85127271 TACTGAAATG
**
85127281 CCCTCAATTTGTAAAATTACCAAAGTT-
1 CCCTCAATTTACAAAATTACCAAAGTTA
** **
85127308 CCCTCGGTTTACAAAATTACC-ATTTTA
1 CCCTCAATTTACAAAATTACCAAAGTTA
**
85127335 CCCTCAATTTACAAAATTACC-ATTTTA
1 CCCTCAATTTACAAAATTACCAAAGTTA
* * * ****
85127362 CCCTCGATTTATAGAATTA-CTGTTTTA
1 CCCTCAATTTACAAAATTACCAAAGTTA
* * * * **
85127389 CCCTCGATTTATAGAATTA-CTATTTTA
1 CCCTCAATTTACAAAATTACCAAAGTTA
* * * ***
85127416 CCCTCGATTTATAGAATTACC-GTTTTA
1 CCCTCAATTTACAAAATTACCAAAGTTA
* **
85127443 CCCTCGATTTACAAAATTACC-ATTTTA
1 CCCTCAATTTACAAAATTACCAAAGTTA
*
85127470 CCCTCAGTTTACAAAATTACCA
1 CCCTCAATTTACAAAATTACCA
85127492 TTTTACCCTC
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
26 4 0.02
27 156 0.97
28 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.38
Consensus pattern (28 bp):
CCCTCAATTTACAAAATTACCAAAGTTA
Found at i:85127342 original size:54 final size:54
Alignment explanation
Indices: 85127281--85127501 Score: 257
Period size: 54 Copynumber: 4.1 Consensus size: 54
85127271 TACTGAAATG
** ** *
85127281 CCCTCAATTTGTAAAATTACCAAAGTT-CCCTCGGTTTACAAAATTACCATTTTA
1 CCCTCAATTTACAAAATTACC-ATTTTACCCTCGATTTACAAAATTACCATTTTA
* * **
85127335 CCCTCAATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTA
* * * * * * *
85127389 CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTA
*
85127443 CCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCAATTTACAAAATTACCATTTTACCCTCGA-TTTACAAAATTACCATTTTA
85127497 CCCTC
1 CCCTC
85127502 GGTTGTGAAA
Statistics
Matches: 145, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 4 0.03
54 141 0.97
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.38
Consensus pattern (54 bp):
CCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTA
Found at i:85127492 original size:27 final size:27
Alignment explanation
Indices: 85127308--85127502 Score: 266
Period size: 27 Copynumber: 7.2 Consensus size: 27
85127298 TACCAAAGTT
*
85127308 CCCTCGGTTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
85127335 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * **
85127362 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
85127389 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
85127416 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
85127443 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
85127470 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
85127497 CCCTCG
1 CCCTCG
85127503 GTTGTGAAAT
Statistics
Matches: 153, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 152 0.99
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:85127565 original size:26 final size:28
Alignment explanation
Indices: 85127536--85127605 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 28
85127526 TGTAGGATAG
*
85127536 AATTACCGAAATACCCTC-AATTT-GAA
1 AATTACCGAAATACCCTCTAATTTACAA
* *
85127562 AATTACCAAAATACCC-CTGATTTACAA
1 AATTACCGAAATACCCTCTAATTTACAA
*
85127589 AATTACAGAAATACCCT
1 AATTACCGAAATACCCT
85127606 TGACTTTCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.03
26 19 0.53
27 16 0.44
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (28 bp):
AATTACCGAAATACCCTCTAATTTACAA
Found at i:85127628 original size:28 final size:26
Alignment explanation
Indices: 85127560--85127662 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 26
85127550 CCTCAATTTG
* * * *
85127560 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTA-TAAAATACCCTTGCTTTAT
* *
85127587 AAAATTACAGAAATACCCTTGACTTTCT
1 AAAATTATA-AAATACCCTTG-CTTTAT
* *
85127615 AAAAATTATAAAATACCATTGGTTTAT
1 -AAAATTATAAAATACCCTTGCTTTAT
*
85127642 AAAATTACTCAAATACCCTTG
1 AAAATTA-TAAAATACCCTTG
85127663 GTTTGTAGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
26 9 0.15
27 32 0.52
28 13 0.21
29 8 0.13
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (26 bp):
AAAATTATAAAATACCCTTGCTTTAT
Found at i:85128134 original size:20 final size:21
Alignment explanation
Indices: 85128103--85128144 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
85128093 ATGGTAAGTT
85128103 GGGCCTCAATGGGCTGGAATC
1 GGGCCTCAATGGGCTGGAATC
*
85128124 GGGCC-CAATGGGTTGGAATC
1 GGGCCTCAATGGGCTGGAATC
85128144 G
1 G
85128145 AGCTCGTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.19, C:0.21, G:0.40, T:0.19
Consensus pattern (21 bp):
GGGCCTCAATGGGCTGGAATC
Found at i:85128665 original size:25 final size:25
Alignment explanation
Indices: 85128598--85128667 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
85128588 AGGAAGTGCT
* * *
85128598 AAAAGGGCTCTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACAG
85128623 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTA-CAG
85128649 -AAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
85128668 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACAG
Found at i:85128680 original size:24 final size:23
Alignment explanation
Indices: 85128598--85128694 Score: 86
Period size: 25 Copynumber: 4.0 Consensus size: 23
85128588 AGGAAGTGCT
* * *
85128598 AAAAGGGCTCTGCCCCAATTTACC
1 AAAAGGGCTTTGCCCC-AGTTATC
85128622 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAG-TTATC
*
85128647 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
85128671 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
85128695 ATGATAAAGC
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
23 4 0.06
24 14 0.23
25 44 0.71
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:85128893 original size:42 final size:42
Alignment explanation
Indices: 85128815--85128947 Score: 232
Period size: 42 Copynumber: 3.2 Consensus size: 42
85128805 TAGTCTCCCC
85128815 AAATGGGCTTGCATACATT-ATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* *
85128856 AAATGGGCTTGCAAACATTCATTGATATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
85128898 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85128940 AAATGGGC
1 AAATGGGC
85128948 CTAAGGGCCA
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
41 18 0.21
42 68 0.79
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:85129006 original size:31 final size:31
Alignment explanation
Indices: 85128971--85129054 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
85128961 CGTTTATAGT
85128971 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
85129002 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85129033 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
85129055 TCAAGACTAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:85131318 original size:27 final size:27
Alignment explanation
Indices: 85131299--85131467 Score: 200
Period size: 27 Copynumber: 6.3 Consensus size: 27
85131289 ATTACCAAAG
85131299 TACCCTCAGTTTACAGAATTACCATTT
1 TACCCTCAGTTTACAGAATTACCATTT
*
85131326 TACCCTC-GATTTACAGAATCACCATTT
1 TACCCTCAG-TTTACAGAATTACCATTT
* * *
85131353 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCAGTTTACAGAATTACCATTT
* * *
85131380 TACCCTC-GATTTATAGAATTATCGTTT
1 TACCCTCAG-TTTACAGAATTACCATTT
*
85131407 TACCCTC-GATTTACAAAATTACCATTT
1 TACCCTCAG-TTTACAGAATTACCATTT
* *
85131434 TACCCTTAGTTTACAAAATTACCATTT
1 TACCCTCAGTTTACAGAATTACCATTT
85131461 TACCCTC
1 TACCCTC
85131468 GGTTGTGAAA
Statistics
Matches: 125, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 123 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (27 bp):
TACCCTCAGTTTACAGAATTACCATTT
Found at i:85131398 original size:81 final size:82
Alignment explanation
Indices: 85131274--85131468 Score: 241
Period size: 81 Copynumber: 2.4 Consensus size: 82
85131264 TACTGAAATG
** ***
85131274 CCCTCAATTTGTAAAATTACCAAAGTACCCTC-AGTTTACAGAATTACCATTTTACCCTCGATTT
1 CCCTCAATTTACAAAATTACCATTTTACCCTCGAGTTTACAGAATTACCATTTTACCCTCGATTT
*
85131338 ACAGAATCACCATTTTA
66 ACAAAATCACCATTTTA
* * * * * *
85131355 CCCTCAATTTATAGAATTACCGTTTTACCCTCGA-TTTATAGAATTATCGTTTTACCCTCGATTT
1 CCCTCAATTTACAAAATTACCATTTTACCCTCGAGTTTACAGAATTACCATTTTACCCTCGATTT
*
85131419 ACAAAATTACCATTTTA
66 ACAAAATCACCATTTTA
* *
85131436 CCCTTAGTTTACAAAATTACCATTTTACCCTCG
1 CCCTCAATTTACAAAATTACCATTTTACCCTCG
85131469 GTTGTGAAAT
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 96 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (82 bp):
CCCTCAATTTACAAAATTACCATTTTACCCTCGAGTTTACAGAATTACCATTTTACCCTCGATTT
ACAAAATCACCATTTTA
Found at i:85131533 original size:27 final size:27
Alignment explanation
Indices: 85131503--85131630 Score: 123
Period size: 27 Copynumber: 4.7 Consensus size: 27
85131493 TGTAGGATAG
*
85131503 AATTACAGAAATACCCTTAATTTGTAA
1 AATTACAGAAATACCCTTAATTTATAA
* *
85131530 AATTACCA-AAATACCCCTAATTTACAA
1 AATTA-CAGAAATACCCTTAATTTATAA
* *
85131557 AATTACAGAAATACCCTTGACTTTCTAAA
1 AATTACAGAAATACCCTT-AATTTAT-AA
* * * **
85131586 AATTATAAAAATACCATTGGTTTATAA
1 AATTACAGAAATACCCTTAATTTATAA
*
85131613 AATTACTGAAATACCCTT
1 AATTACAGAAATACCCTT
85131631 GGTTTGTAGA
Statistics
Matches: 80, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
26 2 0.03
27 51 0.64
28 10 0.12
29 17 0.21
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (27 bp):
AATTACAGAAATACCCTTAATTTATAA
Found at i:85131615 original size:56 final size:55
Alignment explanation
Indices: 85131503--85131631 Score: 152
Period size: 56 Copynumber: 2.3 Consensus size: 55
85131493 TGTAGGATAG
* * *
85131503 AATTACAGAAATACCCTT-AATTTGTAAAATTACCAAAATACCCCTAATTTACAA
1 AATTACAGAAATACCCTTGAATTTCTAAAATTACAAAAATACCACTAATTTACAA
* * * ** *
85131557 AATTACAGAAATACCCTTGACTTTCTAAAAATTATAAAAATACCATTGGTTTATAA
1 AATTACAGAAATACCCTTGAATTTCT-AAAATTACAAAAATACCACTAATTTACAA
*
85131613 AATTACTGAAATACCCTTG
1 AATTACAGAAATACCCTTG
85131632 GTTTGTAGAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 18 0.29
55 5 0.08
56 40 0.63
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (55 bp):
AATTACAGAAATACCCTTGAATTTCTAAAATTACAAAAATACCACTAATTTACAA
Found at i:85131632 original size:27 final size:27
Alignment explanation
Indices: 85131475--85131635 Score: 101
Period size: 27 Copynumber: 5.9 Consensus size: 27
85131465 CTCGGTTGTG
* **
85131475 AAATTACTGAAATACCCCT-GTAGGATA
1 AAATTACTGAAATACCCTTGGT-TTATA
* * ** *
85131502 GAATTACAGAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTTGGTTTATA
** * ** *
85131529 AAATTACCAAAATACCCCTAATTTACA
1 AAATTACTGAAATACCCTTGGTTTATA
* * *
85131556 AAATTACAGAAATACCCTTGACTTTCTAA
1 AAATTACTGAAATACCCTTG-GTTTAT-A
* *
85131585 AAATTA-TAAAAATACCATTGGTTTATA
1 AAATTACT-GAAATACCCTTGGTTTATA
85131612 AAATTACTGAAATACCCTTGGTTT
1 AAATTACTGAAATACCCTTGGTTT
85131636 GTAGATTTAC
Statistics
Matches: 102, Mismatches: 27, Indels: 10
0.73 0.19 0.07
Matches are distributed among these distances:
27 76 0.75
28 9 0.09
29 17 0.17
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTGGTTTATA
Found at i:85132611 original size:25 final size:25
Alignment explanation
Indices: 85132558--85132626 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
85132548 AGGAAGTGCT
* *
85132558 AAAAGGGCTCTG-CCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACAG
85132582 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTA-CAG
85132608 -AAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
85132627 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
24 11 0.27
25 28 0.68
26 2 0.05
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACAG
Found at i:85132639 original size:24 final size:23
Alignment explanation
Indices: 85132558--85132653 Score: 86
Period size: 25 Copynumber: 4.0 Consensus size: 23
85132548 AGGAAGTGCT
* *
85132558 AAAAGGGCTCTG-CCCAGTTTACC
1 AAAAGGGCTTTGCCCCAG-TTATC
85132581 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAG-TTATC
*
85132606 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
85132630 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
85132654 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
23 4 0.06
24 24 0.38
25 35 0.56
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:85132833 original size:42 final size:42
Alignment explanation
Indices: 85132774--85132949 Score: 343
Period size: 42 Copynumber: 4.2 Consensus size: 42
85132764 TAGTCTCCCC
85132774 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85132816 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85132858 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
85132900 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85132942 AAATGGGC
1 AAATGGGC
85132950 CTAAGGGCCA
Statistics
Matches: 133, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 133 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:85133008 original size:31 final size:31
Alignment explanation
Indices: 85132973--85133087 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
85132963 TGTTTACAAT
85132973 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85133004 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
85133035 AAAGGCTTTGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85133066 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
85133088 TCAAGACTAA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:85135371 original size:27 final size:27
Alignment explanation
Indices: 85135326--85135466 Score: 223
Period size: 27 Copynumber: 5.3 Consensus size: 27
85135316 ATTACCAAAG
85135326 TACCCTC-ATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
85135352 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
85135379 TACCCTC-ATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
85135405 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
85135432 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
85135459 TACCCTCG
1 TACCCTCG
85135467 GTTGTGAAAT
Statistics
Matches: 108, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
26 31 0.29
27 77 0.71
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:85135479 original size:53 final size:53
Alignment explanation
Indices: 85135326--85135466 Score: 228
Period size: 53 Copynumber: 2.6 Consensus size: 53
85135316 ATTACCAAAG
85135326 TACCCTCATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* * * *
85135379 TACCCTCATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
*
85135432 TACCCTCGATTTACAAAATTACCATTTTACCCTCG
1 TACCCTC-ATTTACAGAATTACCATTTTACCCTCG
85135467 GTTGTGAAAT
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 56 0.70
54 24 0.30
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.38
Consensus pattern (53 bp):
TACCCTCATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
Found at i:85135489 original size:80 final size:77
Alignment explanation
Indices: 85135302--85135489 Score: 214
Period size: 80 Copynumber: 2.4 Consensus size: 77
85135292 TACTGAAATG
* *
85135302 CCCTCATTTGTAAAATTACCAAAGTACCCTCATTTACAGAATTACCATTTTACCCTCGATTTACA
1 CCCTCAGTTGT-AAATTACGAAA-TACCCTCATTTACAGAATTACCATTTTACCCTCGATTTACA
*
85135367 GAATTACCATTTTA
64 AAATTACCATTTTA
* * *** * *
85135381 CCCTCATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTAC
1 CCCTCAGTTGTA-AATTA-CGAAATACCCTC-ATTTACAGAATTACCATTTTACCCTCGATTTAC
85135446 AAAATTACCATTTTA
63 AAAATTACCATTTTA
*
85135461 CCCTCGGTTGTGAAATTACTGAAATACCC
1 CCCTCAGTTGT-AAATTAC-GAAATACCC
85135490 CTGTAGGATA
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 1 0.01
79 23 0.26
80 65 0.72
81 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (77 bp):
CCCTCAGTTGTAAATTACGAAATACCCTCATTTACAGAATTACCATTTTACCCTCGATTTACAAA
ATTACCATTTTA
Found at i:85135501 original size:80 final size:80
Alignment explanation
Indices: 85135339--85135506 Score: 189
Period size: 80 Copynumber: 2.1 Consensus size: 80
85135329 CCTCATTTAC
* * **
85135339 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCATTTATAGAATTACCGTT
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTATAGAATTACCGAA
* **
85135404 TTACCCTCGATTTAT
66 ATACCCTCGATGGAT
* * * *
85135419 AGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGGTTGT-GAAATTACTGA
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTATAG-AATTACCGA
85135483 AATACCC-CTG-TAGGAT
65 AATACCCTC-GAT-GGAT
85135499 AGAATTAC
1 AGAATTAC
85135507 AGAAATACCC
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 3 0.04
80 71 0.96
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (80 bp):
AGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTATAGAATTACCGAA
ATACCCTCGATGGAT
Found at i:85135531 original size:27 final size:27
Alignment explanation
Indices: 85135501--85135629 Score: 125
Period size: 27 Copynumber: 4.7 Consensus size: 27
85135491 TGTAGGATAG
*
85135501 AATTACAGAAATACCCTTAATTTGTAA
1 AATTACAGAAATACCCTTAATTTATAA
* *
85135528 AATTACCA-AAATACCCCTAATTTACAA
1 AATTA-CAGAAATACCCTTAATTTATAA
* *
85135555 AATTACAGAAATACCCTTGACTTTCTAAA
1 AATTACAGAAATACCCTT-AATTTAT-AA
* * * **
85135584 AATTATAAAAATACCATTGGTTTATAA
1 AATTACAGAAATACCCTTAATTTATAA
*
85135611 AATTACTGAAATACCCTTA
1 AATTACAGAAATACCCTTA
85135630 GTTTGTAGAT
Statistics
Matches: 80, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
26 2 0.03
27 51 0.64
28 10 0.12
29 17 0.21
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (27 bp):
AATTACAGAAATACCCTTAATTTATAA
Found at i:85135542 original size:54 final size:54
Alignment explanation
Indices: 85135468--85135685 Score: 145
Period size: 54 Copynumber: 4.0 Consensus size: 54
85135458 TTACCCTCGG
* ** *
85135468 TTGTGAAATTACTGAAATACCCCTGTAGGATAGAATTACAGAAATACCCTTAAT
1 TTGTAAAATTACCAAAATACCCCTGTAGGATAAAATTACAGAAATACCCTTAAT
* ** * *
85135522 TTGTAAAATTACCAAAATACCCCT-AATTTACAAAATTACAGAAATACCCTTGACT
1 TTGTAAAATTACCAAAATACCCCTGTA-GGATAAAATTACAGAAATACCCTT-AAT
* ** ** ** * *
85135577 TTCTAAAAATTATAAAAATACCATTGGT-TTATAAAATTACTGAAATACCCTTAGT
1 TTGT-AAAATTACCAAAATACCCCT-GTAGGATAAAATTACAGAAATACCCTTAAT
* * * * * * *
85135632 TTGTAGATTTACCAAAACACCCTTGTAGGATGAAATGACTA-AAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTGTAGGATAAAATTAC-AGAAATACCCTTAAT
85135686 AGGTAAAAAG
Statistics
Matches: 125, Mismatches: 32, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
53 3 0.02
54 74 0.59
55 10 0.08
56 38 0.30
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTGTAGGATAAAATTACAGAAATACCCTTAAT
Found at i:85135613 original size:56 final size:54
Alignment explanation
Indices: 85135501--85135629 Score: 150
Period size: 56 Copynumber: 2.4 Consensus size: 54
85135491 TGTAGGATAG
* * *
85135501 AATTACAGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAA
1 AATTACAGAAATACCCTTAATTTCTAAAATTACAAAAATACCACTAATTTACAA
* * * ** *
85135555 AATTACAGAAATACCCTTGACTTTCTAAAAATTATAAAAATACCATTGGTTTATAA
1 AATTACAGAAATACCCTT-AATTTCT-AAAATTACAAAAATACCACTAATTTACAA
*
85135611 AATTACTGAAATACCCTTA
1 AATTACAGAAATACCCTTA
85135630 GTTTGTAGAT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
54 18 0.29
55 6 0.10
56 39 0.62
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (54 bp):
AATTACAGAAATACCCTTAATTTCTAAAATTACAAAAATACCACTAATTTACAA
Found at i:85135633 original size:27 final size:27
Alignment explanation
Indices: 85135473--85135633 Score: 112
Period size: 27 Copynumber: 5.9 Consensus size: 27
85135463 CTCGGTTGTG
*
85135473 AAATTACTGAAATACCCCTGTAG--GATA
1 AAATTACTGAAATA-CCCT-TAGTTTATA
* * * *
85135500 GAATTACAGAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTTAGTTTATA
** * * *
85135527 AAATTACCAAAATACCCCTAATTTACA
1 AAATTACTGAAATACCCTTAGTTTATA
* * *
85135554 AAATTACAGAAATACCCTTGACTTTCTAA
1 AAATTACTGAAATACCCTT-AGTTTAT-A
* * *
85135583 AAATTA-TAAAAATACCATTGGTTTATA
1 AAATTACT-GAAATACCCTTAGTTTATA
85135610 AAATTACTGAAATACCCTTAGTTT
1 AAATTACTGAAATACCCTTAGTTT
85135634 GTAGATTTAC
Statistics
Matches: 102, Mismatches: 26, Indels: 12
0.73 0.19 0.09
Matches are distributed among these distances:
25 2 0.02
26 4 0.04
27 71 0.70
28 9 0.09
29 16 0.16
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTAGTTTATA
Found at i:85135750 original size:27 final size:26
Alignment explanation
Indices: 85135687--85135750 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
85135677 ACCCCTAATA
* * *
85135687 GGTAAAAAGACCGTAAAGCGTTGTAG
1 GGTAAAATGACCGTAAACCCTTGTAG
* * *
85135713 GGGAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAATGACCGTAA-ACCCTTGTAG
85135740 GGTAAAATGAC
1 GGTAAAATGAC
85135751 GAATATGCCC
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
26 13 0.45
27 16 0.55
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (26 bp):
GGTAAAATGACCGTAAACCCTTGTAG
Found at i:85136603 original size:25 final size:25
Alignment explanation
Indices: 85136550--85136618 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
85136540 AGGAAGTGCT
* *
85136550 AAAAGGGCTCTG-CCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACAG
85136574 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTA-CAG
*
85136600 -AAAGGGCTTTACCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
85136619 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
24 11 0.28
25 27 0.68
26 2 0.05
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACAG
Found at i:85136631 original size:24 final size:24
Alignment explanation
Indices: 85136562--85136631 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 24
85136552 AAGGGCTCTG
* *
85136562 CCCAGTTTACTGAAAAGGGCTTTGC
1 CCCAGTTTA-TCAAAAGGGCTTTAC
85136587 CCCAGTTTATCAGAAAGGGCTTTAC
1 CCCAGTTTATCA-AAAGGGCTTTAC
*
85136612 CCCAG-TTATTAAAAGAGGCT
1 CCCAGTTTATCAAAAG-GGCT
85136632 AGGCCTCCAG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
23 4 0.10
24 11 0.28
25 25 0.62
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
CCCAGTTTATCAAAAGGGCTTTAC
Found at i:85136825 original size:42 final size:42
Alignment explanation
Indices: 85136766--85136941 Score: 343
Period size: 42 Copynumber: 4.2 Consensus size: 42
85136756 TAGTCTCCCC
85136766 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85136808 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85136850 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
85136892 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85136934 AAATGGGC
1 AAATGGGC
85136942 CTAAGGGCCA
Statistics
Matches: 133, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 133 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:85137038 original size:30 final size:31
Alignment explanation
Indices: 85136962--85137075 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
85136952 TGTTTACAAT
85136962 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85136993 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
85137024 AAAGGCTT-GGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85137054 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
85137076 TCAAGACTAA
Statistics
Matches: 81, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
30 34 0.42
31 47 0.58
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:85139362 original size:26 final size:27
Alignment explanation
Indices: 85139333--85139470 Score: 95
Period size: 27 Copynumber: 5.3 Consensus size: 27
85139323 TCATTTGTAA
85139333 AATTACCAAAGTACCCTCG-TTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
***
85139359 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
*** *
85139386 AATTACCATTTTA-CCTC-ATTTATAG
1 AATTACCAAAGTACCCTCGATTTACAG
**** * *
85139411 AATTACCGTTTTACCCTCGATTTATAA
1 AATTACCAAAGTACCCTCGATTTACAG
*** *
85139438 AATTACCATTTTACCCTC-ATTTATAG
1 AATTACCAAAGTACCCTCGATTTACAG
85139464 AATTACC
1 AATTACC
85139471 GTTTTACCCT
Statistics
Matches: 101, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
25 19 0.19
26 38 0.38
27 44 0.44
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.38
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:85139413 original size:52 final size:51
Alignment explanation
Indices: 85139347--85139537 Score: 274
Period size: 52 Copynumber: 3.7 Consensus size: 51
85139337 ACCAAAGTAC
* *
85139347 CCTCGTTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
1 CCTCATTTACAGAATTACCGTTTTACCCTCGATTTACA-AATTACCATTTTA
* *
85139399 CCTCATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTA
1 CCTCATTTACAGAATTACCGTTTTACCCTCGATTTA-CAAATTACCATTTTA
* * *
85139451 CCCTCATTTATAGAATTACCGTTTTACCCTCTATTTACAAAATACCATTTTA
1 -CCTCATTTACAGAATTACCGTTTTACCCTCGATTTACAAATTACCATTTTA
*
85139503 CCTCAGTTTACAAAATTACCGTTTTACCCTCGATT
1 CCTCA-TTTACAGAATTACCGTTTTACCCTCGATT
85139538 GTGAAATTAC
Statistics
Matches: 126, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
51 5 0.04
52 85 0.67
53 36 0.29
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.40
Consensus pattern (51 bp):
CCTCATTTACAGAATTACCGTTTTACCCTCGATTTACAAATTACCATTTTA
Found at i:85139475 original size:26 final size:26
Alignment explanation
Indices: 85139344--85139533 Score: 233
Period size: 26 Copynumber: 7.3 Consensus size: 26
85139334 ATTACCAAAG
*
85139344 TACCCTCGTTTACAGAATTACCATTT
1 TACCCTCATTTACAGAATTACCATTT
85139370 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTC-ATTTACAGAATTACCATTT
* *
85139397 TA-CCTCATTTATAGAATTACCGTTT
1 TACCCTCATTTACAGAATTACCATTT
* *
85139422 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTC-ATTTACAGAATTACCATTT
* *
85139449 TACCCTCATTTATAGAATTACCGTTT
1 TACCCTCATTTACAGAATTACCATTT
*
85139475 TACCCTCTATTTACA-AAATACCATTT
1 TACCCTC-ATTTACAGAATTACCATTT
* *
85139501 TA-CCTCAGTTTACAAAATTACCGTTT
1 TACCCTCA-TTTACAGAATTACCATTT
85139527 TACCCTC
1 TACCCTC
85139534 GATTGTGAAA
Statistics
Matches: 145, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
24 1 0.01
25 29 0.20
26 61 0.42
27 54 0.37
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.39
Consensus pattern (26 bp):
TACCCTCATTTACAGAATTACCATTT
Found at i:85139520 original size:105 final size:105
Alignment explanation
Indices: 85139320--85139537 Score: 314
Period size: 105 Copynumber: 2.1 Consensus size: 105
85139310 TACTGAAATG
* *
85139320 CCCTC-ATTTGTAAAATTACCAAAGTACCCTCGTTTACAGAATTACCATTTTACCCTCGATTTAC
1 CCCTCGATTTATAAAATTACCAAAGTACCCTCATTTACAGAATTACCATTTTACCCTCGATTTAC
* * *
85139384 AGAATTACCATTTTACCTCATTTATAGAATTACCGTTTTA
66 AGAAATACCATTTTACCTCATTTACAAAATTACCGTTTTA
*** * * *
85139424 CCCTCGATTTATAAAATTACCATTTTACCCTCATTTATAGAATTACCGTTTTACCCTCTATTTAC
1 CCCTCGATTTATAAAATTACCAAAGTACCCTCATTTACAGAATTACCATTTTACCCTCGATTTAC
85139489 A-AAATACCATTTTACCTCAGTTTACAAAATTACCGTTTTA
66 AGAAATACCATTTTACCTCA-TTTACAAAATTACCGTTTTA
85139529 CCCTCGATT
1 CCCTCGATT
85139538 GTGAAATTAC
Statistics
Matches: 101, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
104 22 0.22
105 79 0.78
ACGTcount: A:0.30, C:0.25, G:0.06, T:0.39
Consensus pattern (105 bp):
CCCTCGATTTATAAAATTACCAAAGTACCCTCATTTACAGAATTACCATTTTACCCTCGATTTAC
AGAAATACCATTTTACCTCATTTACAAAATTACCGTTTTA
Found at i:85139598 original size:26 final size:25
Alignment explanation
Indices: 85139569--85139637 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 25
85139559 TGTAGGATAG
**
85139569 AATTACCGAATACCCTCAATTTGTAA
1 AATTACCGAATACCCT-AATTTACAA
* *
85139595 AATTACCAAAATACCCTGATTTACAA
1 AATTACC-GAATACCCTAATTTACAA
*
85139621 AATTACAGAAATACCCT
1 AATTACCG-AATACCCT
85139638 TGACTTTCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 27 0.77
27 8 0.23
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.28
Consensus pattern (25 bp):
AATTACCGAATACCCTAATTTACAA
Found at i:85139661 original size:28 final size:26
Alignment explanation
Indices: 85139592--85139694 Score: 82
Period size: 26 Copynumber: 3.8 Consensus size: 26
85139582 CCTCAATTTG
* *
85139592 TAAAATTACCAAAATACCC-TGATTTA
1 TAAAATTA-TAAAATACCCTTGCTTTA
* * *
85139618 CAAAATTACAGAAATACCCTTGACTTTC
1 TAAAATTATA-AAATACCCTTG-CTTTA
* *
85139646 TAAAAATTATAAAATACCATTGGTTTA
1 T-AAAATTATAAAATACCCTTGCTTTA
*
85139673 TAAAATTATTGAAATACCCTTG
1 TAAAATTA-TAAAATACCCTTG
85139695 GTTTGTAGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
25 2 0.03
26 22 0.35
27 17 0.27
28 13 0.21
29 8 0.13
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.33
Consensus pattern (26 bp):
TAAAATTATAAAATACCCTTGCTTTA
Found at i:85139680 original size:26 final size:27
Alignment explanation
Indices: 85139648--85139698 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
85139638 TGACTTTCTA
85139648 AAAATTA-TAAAATACCATTGGTTTAT
1 AAAATTATTAAAATACCATTGGTTTAT
* *
85139674 AAAATTATTGAAATACCCTTGGTTT
1 AAAATTATTAAAATACCATTGGTTT
85139699 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (27 bp):
AAAATTATTAAAATACCATTGGTTTAT
Found at i:85140872 original size:42 final size:42
Alignment explanation
Indices: 85140813--85140946 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
85140803 TAGTCTCCCC
85140813 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85140855 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
85140897 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85140939 AAATGGGC
1 AAATGGGC
85140947 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:85141005 original size:31 final size:31
Alignment explanation
Indices: 85140970--85141053 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
85140960 CGTTTACAAT
85140970 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
85141001 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85141032 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
85141054 TCAAGACTAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:85143345 original size:27 final size:27
Alignment explanation
Indices: 85143326--85143521 Score: 277
Period size: 27 Copynumber: 7.3 Consensus size: 27
85143316 ATTACCAAAG
*
85143326 TACCCTCGGTTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
85143353 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
85143380 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
85143407 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
85143434 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
85143461 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
85143488 TACCCTAG-TTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
85143514 TACCCTCG
1 TACCCTCG
85143522 GTTGTGAAAT
Statistics
Matches: 156, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
26 24 0.15
27 132 0.85
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:85143425 original size:81 final size:81
Alignment explanation
Indices: 85143307--85143521 Score: 306
Period size: 81 Copynumber: 2.7 Consensus size: 81
85143297 AATGCCCTTA
* *** *
85143307 ATTTGTAAAATTACCAAAGTACCCTCGGTTTACAGAATTACCATTTTACCCTCGATTTACAGAAT
1 ATTTATAAAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAGAAT
85143372 TACCATTTTACCCTCG
66 TACCATTTTACCCTCG
* * * *
85143388 ATTTATAAAATTACCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCAATTTATAGAAT
1 ATTTATAAAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAGAAT
*
85143453 TACCGTTTTACCCTCG
66 TACCATTTTACCCTCG
* * *
85143469 ATTTACAAAATTACCATTTTACCCT-AGTTTACAAAATTACTATTTTACCCTCG
1 ATTTATAAAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCG
85143522 GTTGTGAAAT
Statistics
Matches: 118, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 23 0.19
81 95 0.81
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (81 bp):
ATTTATAAAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAGAAT
TACCATTTTACCCTCG
Found at i:85143611 original size:26 final size:26
Alignment explanation
Indices: 85143556--85143625 Score: 79
Period size: 26 Copynumber: 2.6 Consensus size: 26
85143546 TGTAGGATAG
**
85143556 AATTAACAAAATACCCTCAATTTGTAA
1 AATT-ACAAAATACCCTCAATTTACAA
*
85143583 AATTACCAAAATACCCT-GATTTACAA
1 AATTA-CAAAATACCCTCAATTTACAA
85143609 AATTACAGAAATACCCT
1 AATTACA-AAATACCCT
85143626 TGACTTTCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
25 2 0.05
26 21 0.55
27 15 0.39
ACGTcount: A:0.47, C:0.21, G:0.04, T:0.27
Consensus pattern (26 bp):
AATTACAAAATACCCTCAATTTACAA
Found at i:85144614 original size:25 final size:26
Alignment explanation
Indices: 85144576--85144645 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 26
85144566 AGGAAGTGCT
* *
85144576 AAAAGGGCTCTGCCCCAGTTTA-CCG
1 AAAAGGGCTTTGCCCCAGTTTATCAG
85144601 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTATCAG
*
85144627 AAAA-GACTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
85144646 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 35 0.85
26 6 0.15
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (26 bp):
AAAAGGGCTTTGCCCCAGTTTATCAG
Found at i:85144852 original size:42 final size:42
Alignment explanation
Indices: 85144793--85144926 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
85144783 TAGTCTCCCT
85144793 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85144835 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
85144877 AAATGGGCTTGCATACATTCATTGACATTACATGTGATACTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85144919 AAATGGGC
1 AAATGGGC
85144927 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:85144985 original size:31 final size:31
Alignment explanation
Indices: 85144950--85145095 Score: 276
Period size: 31 Copynumber: 4.7 Consensus size: 31
85144940 CGTTTATAGT
85144950 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85144981 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85145012 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
85145043 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85145074 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
85145096 TCAAGACTAA
Statistics
Matches: 114, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
30 5 0.04
31 109 0.96
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:85149753 original size:6 final size:6
Alignment explanation
Indices: 85149739--85149796 Score: 71
Period size: 6 Copynumber: 9.5 Consensus size: 6
85149729 GATCAAATTG
* * *
85149739 AAATGA AAAGAA AAATAA AAATAA AAATAA AAATAA AATAAAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AA-ATAA AAATAA
*
85149788 GAATAA AAA
1 AAATAA AAA
85149797 GATAGGAGGA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
6 39 0.89
7 5 0.11
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:85149783 original size:19 final size:18
Alignment explanation
Indices: 85149744--85149796 Score: 70
Period size: 19 Copynumber: 2.9 Consensus size: 18
85149734 AATTGAAATG
* *
85149744 AAAAGAAAAATAAAAATA
1 AAAATAAAAATAAAAAAA
85149762 AAAATAAAAATAAAATAAA
1 AAAATAAAAATAAAA-AAA
*
85149781 AAAATAAGAATAAAAA
1 AAAATAAAAATAAAAA
85149797 GATAGGAGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.83, C:0.00, G:0.04, T:0.13
Consensus pattern (18 bp):
AAAATAAAAATAAAAAAA
Found at i:85155602 original size:14 final size:15
Alignment explanation
Indices: 85155578--85155610 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
85155568 TGAAATAGCC
*
85155578 AAAATTAAAAATTGT
1 AAAATTAAAAATTAT
85155593 AAAA-TAAAAATTAT
1 AAAATTAAAAATTAT
85155607 AAAA
1 AAAA
85155611 CCTAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AAAATTAAAAATTAT
Found at i:85159423 original size:40 final size:40
Alignment explanation
Indices: 85159211--85159395 Score: 293
Period size: 40 Copynumber: 4.6 Consensus size: 40
85159201 GGGCTGAGTC
* * *
85159211 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGAT
85159251 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
85159291 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
**
85159331 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-T
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
85159370 CCCGAAGGCATTTGTGCGAGTTACTA
1 -CCGAAGGCATTTGTGCGAGTTACTA
85159396 TAACCGGGCG
Statistics
Matches: 138, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 1 0.01
40 130 0.94
41 7 0.05
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
Found at i:85159430 original size:40 final size:40
Alignment explanation
Indices: 85159198--85159423 Score: 203
Period size: 40 Copynumber: 5.7 Consensus size: 40
85159188 TCGAATGATG
* * * *
85159198 TCCGGGCTG-AGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGC-GAAGTCCCAAAGGCATTTGTGC-GAGTTACTAAA
* * *
85159238 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCGAAG-TCCCAAAGGCATTTGTGCGAGTTACTAAA
* * *
85159278 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCGAAG-TCCCAAAGGCATTTGTGCGAGTTACTAAA
* * *
85159318 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCGAAG-TCCCAAAGGCATTTGTGCGAGTTACTAAA
** *
85159358 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCGAAGTCCCAAAGGCATTTGTGCGAGTTACTA-AA
*
85159399 -CCGGGCGATGTCCCAAAGGCATTTG
1 TCCGGGCGAAGTCCCAAAGGCATTTG
85159424 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 159 0.94
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCGAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
Found at i:85159430 original size:80 final size:80
Alignment explanation
Indices: 85159211--85159423 Score: 263
Period size: 80 Copynumber: 2.7 Consensus size: 80
85159201 GGGCTGAGTC
* * * * *
85159211 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACGAAGATCCAAAGGCATTTGTGCGAGTTACT
**
85159275 AAATCCGGACTAAGAT
65 AAATCCGGGTTAAGAT
* *
85159291 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACGAAGATCCAAAGGCATTTGTGCGAGTTACTA
85159356 AATCCGGGTTAAG-T
66 AATCCGGGTTAAGAT
* *
85159370 CCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCGATG-TCCCAAAGGCATTTG
1 -CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACGAAGAT-CCAAAGGCATTTG
85159424 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
79 2 0.02
80 109 0.91
81 9 0.08
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACGAAGATCCAAAGGCATTTGTGCGAGTTACTA
AATCCGGGTTAAGAT
Done.