Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 274 of 433
Found at i:85159441 original size:80 final size:79
Alignment explanation
Indices: 85159207--85159446 Score: 247
Period size: 80 Copynumber: 3.0 Consensus size: 79
85159197 GTCCGGGCTG
* * * * * **
85159207 AGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGT
1 AGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACGAAGATCCAAAGGCATTTGAACGAGT
*
85159271 TACTAAATCCGGACTA
65 TACTAAATCCGG-TTA
* * **
85159287 AGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGT
1 AG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACGAAGATCCAAAGGCATTTGAACGAGT
85159351 TACTAAATCCGGGTTA
65 TACTAAATCC-GGTTA
* *
85159367 AGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCGATG-TCCCAAAGGCATTTGAACGAG
1 AGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACGAAGAT-CCAAAGGCATTTGAACGAG
*
85159430 -TAGCTATATCCGGTTA
64 TTA-CTAAATCCGGTTA
85159446 A
1 A
85159447 ATTGAAGGTA
Statistics
Matches: 142, Mismatches: 11, Indels: 15
0.85 0.07 0.09
Matches are distributed among these distances:
79 10 0.07
80 120 0.85
81 12 0.08
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
AGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACGAAGATCCAAAGGCATTTGAACGAGTT
ACTAAATCCGGTTA
Found at i:85159442 original size:120 final size:120
Alignment explanation
Indices: 85159211--85159430 Score: 277
Period size: 120 Copynumber: 1.8 Consensus size: 120
85159201 GGGCTGAGTC
*
85159211 CCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
* * **
85159276 AATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
66 AATCCGGACGAAGATCCAAAGGCATTTGAACGAGTTACTAAATCCGGACTAAGAT
* * **
85159331 CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTAC
1 CCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC
* *
85159394 TATAA-CCGGGCGATG-TCCCAAAGGCATTTGAACGAGT
64 TA-AATCCGGACGAAGAT-CCAAAGGCATTTGAACGAGT
85159431 AGCTATATCC
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
119 2 0.02
120 74 0.87
121 9 0.11
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (120 bp):
CCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
AATCCGGACGAAGATCCAAAGGCATTTGAACGAGTTACTAAATCCGGACTAAGAT
Found at i:85167584 original size:40 final size:40
Alignment explanation
Indices: 85167372--85167556 Score: 275
Period size: 40 Copynumber: 4.6 Consensus size: 40
85167362 GGGCTGAGTC
* * *
85167372 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGAT
85167412 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
85167452 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
* * **
85167492 CCGAAGGTATTTGTGCAAGTTACTAAATCCGGGTTAAG-T
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
85167531 CCCGAAGGCATTTGTGCGAGTTACTA
1 -CCGAAGGCATTTGTGCGAGTTACTA
85167557 TAACCGGGCG
Statistics
Matches: 134, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.94
41 7 0.05
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
Found at i:85167603 original size:120 final size:120
Alignment explanation
Indices: 85167372--85167591 Score: 286
Period size: 120 Copynumber: 1.8 Consensus size: 120
85167362 GGGCTGAGTC
* *
85167372 CCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
* **
85167437 AATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
66 AATCCGGACGAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGACTAAGAT
* **
85167492 CCGAAGGTATTTGTGC-AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTAC
1 CCGAAGG-ATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC
* *
85167555 TATAA-CCGGGCGATG-TCCAGAAGGCATTTGAACGAGT
64 TA-AATCCGGACGAAGATCC-GAAGGCATTTGAACGAGT
85167592 AGCTATATCC
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
119 4 0.05
120 73 0.85
121 9 0.10
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (120 bp):
CCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
AATCCGGACGAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGACTAAGAT
Found at i:85170943 original size:24 final size:23
Alignment explanation
Indices: 85170924--85170968 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
85170914 ATATCAGGTG
85170924 CAAGCTCGGGGTCAAAATCAAGGC
1 CAAGCTCGGGGTCAAAATC-AGGC
* *
85170948 CCAGCTGGGGGTCAAAATCAG
1 CAAGCTCGGGGTCAAAATCAG
85170969 AGAGGTAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 2 0.11
24 17 0.89
ACGTcount: A:0.31, C:0.24, G:0.31, T:0.13
Consensus pattern (23 bp):
CAAGCTCGGGGTCAAAATCAGGC
Found at i:85172851 original size:55 final size:54
Alignment explanation
Indices: 85172701--85172898 Score: 186
Period size: 55 Copynumber: 3.6 Consensus size: 54
85172691 AACTTACCAT
* * * * *
85172701 TGCCATGTCTTGACATGGTCTTACGTGCTATCCTTGCCATAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * ** *
85172754 CGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCTTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * *
85172809 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* *
85172863 TCCCTTGCCTTCG-CATGGTCTCTTACATGATATCCT
1 TGCCATGCCTT-GACATGG--TCTTACATGATATCCT
85172899 CATCTTACCA
Statistics
Matches: 116, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
52 2 0.02
53 31 0.27
54 23 0.20
55 43 0.37
56 17 0.15
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:85183239 original size:49 final size:47
Alignment explanation
Indices: 85183178--85183294 Score: 128
Period size: 47 Copynumber: 2.4 Consensus size: 47
85183168 AGTTAATGCA
* * *
85183178 TTGGCTACGGGCCATGATAT-CGCACTTTGGGTGCGAATAATACCTTGAT
1 TTGGCTATGGGCCATGATATACGCACTTTGAGAG-GAAT-A-ACCTTGAT
* * * *
85183227 TTGGCTATGGGCCATGATATAGGTATTTTGAGAGGAGTAACCTTGAT
1 TTGGCTATGGGCCATGATATACGCACTTTGAGAGGAATAACCTTGAT
*
85183274 TTGGCTATGGGCCATGGTATA
1 TTGGCTATGGGCCATGATATA
85183295 GGTACTCCGG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 28 0.47
48 1 0.02
49 22 0.37
50 8 0.14
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.32
Consensus pattern (47 bp):
TTGGCTATGGGCCATGATATACGCACTTTGAGAGGAATAACCTTGAT
Found at i:85183317 original size:47 final size:47
Alignment explanation
Indices: 85183218--85183347 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 47
85183208 GTGCGAATAA
* * ** *
85183218 TACCTTGATTTGGCTATGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGAGAAGT
* * *
85183265 AACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGAGAAGT
* * *
85183312 TACCTTGATTTGGCTACGGGGCATGGTATAAGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
85183348 TATCGATTGT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGAGAAGT
Found at i:85190506 original size:11 final size:11
Alignment explanation
Indices: 85190492--85190567 Score: 54
Period size: 11 Copynumber: 6.8 Consensus size: 11
85190482 GATAATCACT
85190492 TTAATATTAAA
1 TTAATATTAAA
85190503 TTAATA--AAA
1 TTAATATTAAA
85190512 -TAATATTAAGA
1 TTAATATTAA-A
85190523 -TAAGTATTAAA
1 TTAA-TATTAAA
85190534 TTTAAT-TTAATA
1 -TTAATATTAA-A
85190546 TTAACCTATTAAA
1 TTAA--TATTAAA
*
85190559 ATAATATTA
1 TTAATATTA
85190568 TTTTTGAAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 20
0.72 0.01 0.27
Matches are distributed among these distances:
8 5 0.09
9 3 0.06
10 2 0.04
11 24 0.44
12 8 0.15
13 8 0.15
14 4 0.07
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:85193244 original size:40 final size:40
Alignment explanation
Indices: 85192945--85193236 Score: 487
Period size: 40 Copynumber: 7.3 Consensus size: 40
85192935 GGACTAGGAT
* * *
85192945 CCGAAGGCATTTATGCGAGTTAATAAATCCAGGTTAAGTC
1 CCGAAGGCGTTTATGCGAGTTACTAAATCCGGGTTAAGTC
*
85192985 CCGAAGGCATTTATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCGTTTATGCGAGTTACTAAATCCGGGTTAAGTC
85193025 CCGAAGGCGTTTATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCGTTTATGCGAGTTACTAAATCCGGGTTAAGTC
*
85193065 CCGAAGGCATTTATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCGTTTATGCGAGTTACTAAATCCGGGTTAAGTC
*
85193105 CCGAAGGAGTTTATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCGTTTATGCGAGTTACTAAATCCGGGTTAAGTC
85193145 CCGAAGGCGTTTATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCGTTTATGCGAGTTACTAAATCCGGGTTAAGTC
* * *
85193185 CCGAAGGCGTTTATGCGAGTTGCTATAA-CCGGGCTATGTC
1 CCGAAGGCGTTTATGCGAGTTACTA-AATCCGGGTTAAGTC
85193225 CCGAAGGCGTTT
1 CCGAAGGCGTTT
85193237 GAACGAGTAG
Statistics
Matches: 241, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 239 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCGTTTATGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:85199723 original size:48 final size:48
Alignment explanation
Indices: 85199596--85199871 Score: 299
Period size: 48 Copynumber: 5.8 Consensus size: 48
85199586 AAGGTTAAGT
* ** *
85199596 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GACTCACATTTCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATAACAA
* *
85199644 GGCCGATG-CATGTCCCAGGCATGGTCTTACACTAGCTCTCATAACAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAA
* * * * **
85199691 TGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAA-TG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAA
* * * *
85199738 TGACCGATGACATGTCCCAGACATGGTCTTACACTAGCACACATATCAA
1 TG-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAA
* * * **
85199787 CGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAA-TG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAA
*
85199834 TGGCCGATGCCATGTCCCAGACAAGGTCTTACACTAGC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
85199872 ACACATATCA
Statistics
Matches: 186, Mismatches: 37, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
47 40 0.22
48 145 0.78
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAA
Found at i:85199796 original size:96 final size:95
Alignment explanation
Indices: 85199599--85199883 Score: 403
Period size: 96 Copynumber: 3.0 Consensus size: 95
85199589 GTTAAGTTGC
* * * * *
85199599 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACAT-TTCGAGGCCGATGCATGTCCCAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGA
* * * *
85199663 CATGGTCTTACACTAGCTCTCATAACAATGT
65 CATGGTCTTACACTAGCACACATATCAACGT
* * *
85199694 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGACCGATGACATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG-CATGTCCCAGA
85199759 CATGGTCTTACACTAGCACACATATCAACG-
65 CATGGTCTTACACTAGCACACATATCAACGT
85199789 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG-CATGTCCCAG
*
85199854 ACAAGGTCTTACACTAGCACACATATCAAC
64 ACATGGTCTTACACTAGCACACATATCAAC
85199884 CAAATGTCAT
Statistics
Matches: 170, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
95 45 0.26
96 125 0.74
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
ATGGTCTTACACTAGCACACATATCAACGT
Found at i:85199862 original size:144 final size:143
Alignment explanation
Indices: 85199598--85199868 Score: 375
Period size: 144 Copynumber: 1.9 Consensus size: 143
85199588 GGTTAAGTTG
* * * * * *
85199598 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATTTCGAGGCCGATGCATGTCCCAGG
1 CCGATGACATGTCCCAGACATGGTCTTACACTGACACACATATCAACGCCGATGCATGTCCCAGA
* * *
85199663 CATGGTCTTACACTAGCTCTCATAACAATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGC
66 CATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTCCCAAACAAGGTCTTACACTGGC
85199728 TCTCATAATGTGA
131 TCTCATAATGTGA
*
85199741 CCGATGACATGTCCCAGACATGGTCTTACACT-AGCACACATATCAACGCTGATGCCATGTCCCA
1 CCGATGACATGTCCCAGACATGGTCTTACACTGA-CACACATATCAACGCCGATG-CATGTCCCA
* ** *
85199805 GACATGGTCTTACACTGGCTCTCATAA-TGTGGCCGATGCCATGTCCCAGACAAGGTCTTACACT
64 GACATGGTCTTACACTAGCTCTCATAACAAT-GCCGATGCCATGTCCCAAACAAGGTCTTACACT
85199869 AGCACACATA
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
142 1 0.01
143 47 0.42
144 63 0.57
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (143 bp):
CCGATGACATGTCCCAGACATGGTCTTACACTGACACACATATCAACGCCGATGCATGTCCCAGA
CATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTCCCAAACAAGGTCTTACACTGGC
TCTCATAATGTGA
Found at i:85203581 original size:39 final size:40
Alignment explanation
Indices: 85203510--85203733 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
85203500 GCTACTCGTT
*
85203510 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
85203550 CAAATGCCTT-GGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
85203589 CCAATGCGTTC-GGATCTTAGTCCGGATATT-GTGACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAACTCGCA
* *
85203629 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
85203668 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
85203709 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85203734 CATCATTCGA
Statistics
Matches: 156, Mismatches: 18, Indels: 20
0.80 0.09 0.10
Matches are distributed among these distances:
38 4 0.03
39 64 0.41
40 73 0.47
41 15 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:85203626 original size:79 final size:80
Alignment explanation
Indices: 85203510--85203733 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 80
85203500 GCTACTCGTT
* * * * *
85203510 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCACAAATGCCTT-GGGACTTAACCCG
1 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
85203573 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* * * * *
85203589 CCAATGCGTTCGGATCTTAGTCCGGATATTGTGACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGG
85203653 AATTAGTAACTCGCA
66 AATTAGTAACTCGCA
*
85203668 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
85203732 GA
65 GA
85203734 CATCATTCGA
Statistics
Matches: 125, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 3 0.02
79 101 0.81
80 21 0.17
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:85206617 original size:50 final size:49
Alignment explanation
Indices: 85206557--85206944 Score: 279
Period size: 50 Copynumber: 7.8 Consensus size: 49
85206547 TTAGGTCACG
*
85206557 TGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTGTTAGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTT-CA
* * ** *
85206607 TGTGTAGTACTAAGTGCAGGCTACTA-ATCGTACCCA-ATAGTTTCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGT-GTA-CCAGATTGTTAGGTTCA
* * *
85206656 TGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGG-TCA
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTTCA
* * * *
85206706 TGTATGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTGATAGG-CCGTA
1 TG--TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTTC--A
* * * * * * * *
85206758 TGTGTAGTACTAAGTGCAGACTACTATGCGTACCCG-TTAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGT-TCA
* * * * * * *
85206809 TGTGCAGTACAAAGTGCAGGCTACTACATGTATCAGATGGATAAG-TCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTTCA
* * *
85206857 TGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATT-GGTCGCA
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT-TCA
* *
85206909 TGTGTAGTACTAA-TGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
85206945 GAGCTTCGGT
Statistics
Matches: 260, Mismatches: 58, Indels: 41
0.72 0.16 0.11
Matches are distributed among these distances:
48 4 0.02
49 24 0.09
50 155 0.60
51 69 0.27
52 7 0.03
53 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTTCA
Found at i:85206681 original size:101 final size:99
Alignment explanation
Indices: 85206551--85206933 Score: 323
Period size: 101 Copynumber: 3.8 Consensus size: 99
85206541 ACAGTTTTAG
* * * *
85206551 GTCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTGTTAGGTTGCATGTGTAGTA
1 GTCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
*
85206616 CTAAGTGCAGGCTACTA-ATCGTACCCAATAGTTTC
66 CTAAGTGCAGGCTACTACAT-GTACCCAATAG-TTA
* *
85206651 GATCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGT--CATGTATGTA
1 G-TCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATG--TGTA
* * ** * *
85206714 GTACTAAGTGTAGGCTACTACGTGTACCGGATTGATA
63 GTACTAAGTGCAGGCTACTACATGTACCCAATAGTTA
* * * * * * * * * * *
85206751 GGCCGTATGTGTAGTACTAAGTGC-AGACTACTATGCGTACCCG-TTAACTTCGATCACATGTGC
1 -GTCATGTGTGTAGTACTAAGTGCAAG-CTACTACGTGTACCAGATT--GTTAGGTCGCATGTGT
* * * *
85206814 AGTACAAAGTGCAGGCTACTACATGTA-TCAGATGGATAA
62 AGTACTAAGTGCAGGCTACTACATGTACCCA-ATAG-TTA
* * *
85206853 GTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATT-GGTCGCATGTGTAGT
1 GTCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTG-TTAGGTCGCATGTGTAGT
85206917 ACTAA-TGCAGGCTACTA
65 ACTAAGTGCAGGCTACTA
85206934 TGCGTACCAG
Statistics
Matches: 221, Mismatches: 47, Indels: 31
0.74 0.16 0.10
Matches are distributed among these distances:
99 19 0.09
100 49 0.22
101 144 0.65
102 5 0.02
103 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (99 bp):
GTCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTACATGTACCCAATAGTTA
Found at i:85206818 original size:151 final size:151
Alignment explanation
Indices: 85206547--85206941 Score: 551
Period size: 151 Copynumber: 2.6 Consensus size: 151
85206537 TAAAACAGTT
* * * * *
85206547 TTAGGTCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTGTTAGGTTGCATGTGT
1 TTAGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
** ** * *
85206612 AGTACTAAGTGCAGGCTACTAAT-CGTACCCAATAGTTTCGATCATGTGTGTAGTACTAAGTGCA
66 AGTACTAAGTGCAGGCTACT-ATGCGTACCCAATAACTTCGATCACATGTGCAGTACAAAGTGCA
*
85206676 AGCTACTACGTGTATCAGATGG
130 AGCTACTACATGTATCAGATGG
* * * *
85206698 TTAGGTCATGTATGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTGATAGGCCGTATGTGT
1 TTAGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
* ** *
85206763 AGTACTAAGTGCAGACTACTATGCGTACCCGTTAACTTCGATCACATGTGCAGTACAAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGATCACATGTGCAGTACAAAGTGCAA
85206828 GCTACTACATGTATCAGATGG
131 GCTACTACATGTATCAGATGG
* * * *
85206849 ATAAGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATTGGTCGCATGTGT
1 TTAGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
85206914 AGTACTAA-TGCAGGCTACTATGCGTACC
66 AGTACTAAGTGCAGGCTACTATGCGTACC
85206942 AGAGAGCTTC
Statistics
Matches: 214, Mismatches: 29, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
150 21 0.10
151 193 0.90
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (151 bp):
TTAGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGATCACATGTGCAGTACAAAGTGCAA
GCTACTACATGTATCAGATGG
Found at i:85207849 original size:180 final size:178
Alignment explanation
Indices: 85207502--85207856 Score: 507
Period size: 178 Copynumber: 2.0 Consensus size: 178
85207492 TCCAAGATCT
* * * *
85207502 ATACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGAAACTGTCAGACTGTGAAACAGGGTTA
1 ATACCATGAGATAAATAACTTTTAGTGAAGAAAGATAGAAACTATCAGACAGTGAAACAGGGTTA
* *
85207567 TCTTTAATGAATAAATGTACTAATTGGCTAAACCAAAAATTCTAAAAATTTATGGTAAGAATAAA
66 ACTTTAATGAATAAATGTACTAATTGGATAAACCAAAAATTCTAAAAATTTATGGTAAGAATAAA
* *
85207632 TATGAGTCTAGTTTCTGGGAAAATTAGCGGTTCTTAATTTGGAGTACC
131 TATGAGTCTAGTTTCTGAGAAAATTAGCGGATCTTAATTTGGAGTACC
* * * ** *
85207680 ATACCATGAGATAAATAACTTTTAGTGAAGAGAGGTAGGAACTATTGGACAGTGAAATAGGAG-T
1 ATACCATGAGATAAATAACTTTTAGTGAAGAAAGATAGAAACTATCAGACAGTGAAACAGG-GTT
*
85207744 AACTTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTGAAAAGTTTATGGTAAGAAT
65 AACTTTAATGAATAAA-TGTACTAATTGGATAAACCAAAAATTCT-AAAAATTTATGGTAAGAAT
* *
85207809 ATATGTGAGTCTAGTTTCTGAGAAAATTAAG-GGATCTTAATTTGGAGT
128 AAATATGAGTCTAGTTTCTGAGAAAATT-AGCGGATCTTAATTTGGAGT
85207857 TCCGTAGCTC
Statistics
Matches: 156, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
178 67 0.43
179 28 0.18
180 59 0.38
181 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (178 bp):
ATACCATGAGATAAATAACTTTTAGTGAAGAAAGATAGAAACTATCAGACAGTGAAACAGGGTTA
ACTTTAATGAATAAATGTACTAATTGGATAAACCAAAAATTCTAAAAATTTATGGTAAGAATAAA
TATGAGTCTAGTTTCTGAGAAAATTAGCGGATCTTAATTTGGAGTACC
Found at i:85212787 original size:25 final size:25
Alignment explanation
Indices: 85212759--85212806 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
85212749 TTATACCATG
* * *
85212759 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
85212784 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
85212807 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:85212875 original size:20 final size:20
Alignment explanation
Indices: 85212850--85212888 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
85212840 TAAATATGGT
85212850 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
85212870 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
85212889 GGTAATCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:85213006 original size:46 final size:48
Alignment explanation
Indices: 85212939--85213056 Score: 161
Period size: 46 Copynumber: 2.5 Consensus size: 48
85212929 GAGGAAGTGA
85212939 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
85212985 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
85213033 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85213057 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
46 34 0.53
47 8 0.12
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:85213052 original size:25 final size:24
Alignment explanation
Indices: 85212939--85213056 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
85212929 GAGGAAGTGA
*
85212939 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
85212963 AAAAGGGCTTATG-CCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
85212985 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
85213009 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
85213033 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85213057 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
22 13 0.15
23 16 0.19
24 44 0.52
25 11 0.13
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:85213283 original size:31 final size:31
Alignment explanation
Indices: 85213248--85213342 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
85213238 CGTTTACAGT
85213248 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
85213279 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
85213310 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
85213341 AA
1 AA
85213343 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:85220872 original size:25 final size:25
Alignment explanation
Indices: 85220844--85220891 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
85220834 TTATACCATG
* * *
85220844 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
85220869 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
85220892 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:85220959 original size:19 final size:19
Alignment explanation
Indices: 85220935--85220987 Score: 78
Period size: 15 Copynumber: 3.0 Consensus size: 19
85220925 TAAATATGGT
85220935 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
85220954 ATGTATGATATG--CAT--
1 ATGTATGATATGCACATGA
85220969 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
85220988 GGTAATCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 12 0.40
17 6 0.20
19 12 0.40
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (19 bp):
ATGTATGATATGCACATGA
Found at i:85221105 original size:46 final size:48
Alignment explanation
Indices: 85221038--85221155 Score: 161
Period size: 46 Copynumber: 2.5 Consensus size: 48
85221028 GAGGAAGTGA
85221038 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
85221084 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
85221132 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85221156 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
46 34 0.53
47 8 0.12
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:85221151 original size:25 final size:24
Alignment explanation
Indices: 85221038--85221155 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
85221028 GAGGAAGTGA
*
85221038 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
85221062 AAAAGGGCTTATG-CCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
85221084 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
85221108 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
85221132 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85221156 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
22 13 0.15
23 16 0.19
24 44 0.52
25 11 0.13
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:85221382 original size:31 final size:31
Alignment explanation
Indices: 85221347--85221462 Score: 169
Period size: 31 Copynumber: 3.5 Consensus size: 31
85221337 CGTTTACAGT
85221347 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
85221378 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
85221409 AAAGGCTTCGGCCCAGTATTATGAAATGAAATATGA
1 AAAGGCTTCGGCCCAGTA--AT---ATGAAATATGA
*
85221445 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
85221463 GCATGATTGA
Statistics
Matches: 78, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
36 14 0.18
37 13 0.17
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:85224452 original size:47 final size:45
Alignment explanation
Indices: 85224386--85224555 Score: 188
Period size: 47 Copynumber: 3.7 Consensus size: 45
85224376 AACCCGCCCA
*
85224386 TAAGTGAACTCGGACTCAACTCAACAGAGCTCGGGCGTTCGCATCC
1 TAAGTGAACTCGGACTCAACTCAAC-GAGTTCGGGCGTTCGCATCC
*
85224432 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCC
* * * *
85224481 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACGCTCGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCC
85224524 TAAGTGAACTCGGAC-CAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
85224556 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 9, Indels: 21
0.78 0.07 0.16
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 4 0.04
44 23 0.22
45 3 0.03
46 28 0.27
47 31 0.30
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCC
Found at i:85224553 original size:90 final size:94
Alignment explanation
Indices: 85224391--85224560 Score: 285
Period size: 90 Copynumber: 1.9 Consensus size: 94
85224381 GCCCATAAGT
* *
85224391 GAACTCGGACTCAACTCAACAGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
85224456 ACGAGTTCGGATGCCTAGTTACATCTCAC
66 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
85224485 GAACTC-GACTCAACTCAAC-GAGTTCGGACGCTCGCATCC-TAAGTGAACTCGGAC-CAACTCA
1 GAACTCGGACTCAACTCAACAGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
85224546 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
85224561 CAAATATCCC
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
90 22 0.30
91 15 0.21
92 17 0.23
93 13 0.18
94 6 0.08
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.20
Consensus pattern (94 bp):
GAACTCGGACTCAACTCAACAGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:85226971 original size:30 final size:30
Alignment explanation
Indices: 85226927--85227015 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
85226917 CAAAGATAAC
85226927 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
85226956 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
85226986 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
85227016 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:85226975 original size:15 final size:15
Alignment explanation
Indices: 85226927--85227006 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
85226917 CAAAGATAAC
*
85226927 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
85226941 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
85226956 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
85226971 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
85226986 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
85227001 AAGAAA
1 AAGAAA
85227007 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:85227015 original size:15 final size:15
Alignment explanation
Indices: 85226938--85227015 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
85226928 AGAAAACCGA
85226938 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
85226953 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
85226967 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
85226982 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
85226998 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
85227013 ATA
1 ATA
85227016 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:85230021 original size:46 final size:46
Alignment explanation
Indices: 85229954--85230127 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
85229944 TGTAACCCGC
*
85229954 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
85230000 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
85230050 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
85230092 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
85230128 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:85230120 original size:92 final size:93
Alignment explanation
Indices: 85229962--85230132 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
85229952 GCCCATAAGT
* *
85229962 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
85230027 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
85230055 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
85230119 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
85230133 CAAATATCCA
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 47 0.63
93 28 0.37
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:85230146 original size:45 final size:45
Alignment explanation
Indices: 85229959--85230146 Score: 168
Period size: 46 Copynumber: 4.1 Consensus size: 45
85229949 CCCGCCCATA
* * * * * *
85229959 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCATACATCC
*
85230005 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-C
* * * *
85230053 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-CGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCC
* *
85230097 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC
85230142 AGTGA
1 AGTGA
85230147 CATGTCACTT
Statistics
Matches: 115, Mismatches: 18, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
43 2 0.02
44 9 0.08
45 35 0.30
46 36 0.31
47 28 0.24
48 3 0.03
49 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC
Found at i:85232554 original size:30 final size:30
Alignment explanation
Indices: 85232510--85232598 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
85232500 CAAAGATAAC
85232510 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
85232539 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
85232569 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
85232599 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:85232558 original size:15 final size:15
Alignment explanation
Indices: 85232510--85232589 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
85232500 CAAAGATAAC
*
85232510 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
85232524 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
85232539 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
85232554 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
85232569 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
85232584 AAGAAA
1 AAGAAA
85232590 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:85232598 original size:15 final size:15
Alignment explanation
Indices: 85232521--85232598 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
85232511 AGAAAACCGA
85232521 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
85232536 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
85232550 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
85232565 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
85232581 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
85232596 ATA
1 ATA
85232599 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:85235657 original size:93 final size:93
Alignment explanation
Indices: 85235545--85235716 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85235535 GCCCATAAGT
* *
85235545 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
85235610 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
85235638 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
85235703 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
85235717 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:85235712 original size:46 final size:46
Alignment explanation
Indices: 85235537--85235712 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
85235527 TGTAACCCGC
* * *
85235537 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85235583 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
85235633 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
85235676 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
85235713 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85240874 original size:29 final size:28
Alignment explanation
Indices: 85240840--85240942 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
85240830 TACTCAATCA
*
85240840 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
85240869 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
85240898 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
85240927 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
85240943 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:85245331 original size:38 final size:39
Alignment explanation
Indices: 85245255--85245527 Score: 435
Period size: 39 Copynumber: 7.1 Consensus size: 39
85245245 ATTATATTAT
* *
85245255 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
85245294 CAGCATGAAGCCTACGGGAC-TTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
85245332 CAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
85245370 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
85245409 CAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
85245448 CATCACGAAGCCTGCGGGACTTT-GCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
85245486 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
85245525 CAG
1 CAG
85245528 TGTCTTGCAT
Statistics
Matches: 213, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
37 4 0.02
38 97 0.46
39 112 0.53
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:85245348 original size:77 final size:77
Alignment explanation
Indices: 85245247--85245527 Score: 458
Period size: 77 Copynumber: 3.6 Consensus size: 77
85245237 AACCCGAAAT
* * * *
85245247 TATATTAT-CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCATGAAGCCTACGG
1 TATATT-TCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
85245311 GACTTGGCCCGGA
65 GACTTGGCCCGGA
*
85245324 TACATTTCCAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
1 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
85245388 ACTTTGGCCCGGA
66 AC-TTGGCCCGGA
* *
85245401 TATATTTCCAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTCCATCACGAAGCCTGCGGG
1 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
*
85245466 ACTTTGCCCGGA
66 ACTTGGCCCGGA
85245478 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
85245528 TGTCTTGCAT
Statistics
Matches: 190, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
76 41 0.22
77 107 0.56
78 42 0.22
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (77 bp):
TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
ACTTGGCCCGGA
Found at i:85247878 original size:20 final size:21
Alignment explanation
Indices: 85247840--85247878 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
85247830 TCGAAAGAGC
85247840 CACACGGGCGTGTTACCCTTT
1 CACACGGGCGTGTTACCCTTT
*
85247861 CACACGGGCTTG-TACCCT
1 CACACGGGCGTGTTACCCT
85247879 GTTTCAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.36, G:0.23, T:0.26
Consensus pattern (21 bp):
CACACGGGCGTGTTACCCTTT
Found at i:85254063 original size:48 final size:47
Alignment explanation
Indices: 85253963--85254229 Score: 232
Period size: 46 Copynumber: 5.7 Consensus size: 47
85253953 TCACTTGTGT
* * * *
85253963 GAGCTAGTGTAAGACATGTTTGGGACAT-GCATCGGCCA-C-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCAG-CATCGA-GACGA
* * *
85254009 GAGCTAGTGTAACACCATGTCTGGGACATGGCATCAACATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCAGCATCGAGACGA
* * *
85254057 GAGCTAGTGTAAGACATGTCTAGGACAT-GCATCAGCCTCGAGATGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCAGCATCGAGACG-A
* * * *
85254104 -AGCCAGTGTAAGACATGTCTGGGACA-AGCATCAGC-TACGAGATGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCAGCAT-CGAGACGA
* *
85254149 G-TC-AGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-GAATATGCGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCAGCATCG-AGA--CGA
85254197 GAGCTAGTGTAAGA-ATGTCTGGGACATGGCATC
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATC
85254230 GGCTCCTTAC
Statistics
Matches: 183, Mismatches: 22, Indels: 30
0.78 0.09 0.13
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 75 0.41
47 30 0.16
48 42 0.23
49 2 0.01
50 9 0.05
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGGCATCAGCATCGAGACGA
Found at i:85255362 original size:13 final size:13
Alignment explanation
Indices: 85255344--85255369 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85255334 GTTTGGTTTT
85255344 TGATAATTTCTAC
1 TGATAATTTCTAC
85255357 TGATAATTTCTAC
1 TGATAATTTCTAC
85255370 GTTTTTGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
TGATAATTTCTAC
Found at i:85262635 original size:66 final size:66
Alignment explanation
Indices: 85262551--85262680 Score: 188
Period size: 66 Copynumber: 2.0 Consensus size: 66
85262541 ACTTACTCAT
* * * * *
85262551 CAGTCTTTTCCTCGAATCTCTAGTTTCACAATCAACTTTTCTTTTCTCTTTATTGAACTCTTCGG
1 CAGTCTTTCCCTCAAATCTCTAGCTTCACAATCAACTTTTCTCTTCTCTTTATTCAACTCTTCGG
85262616 C
66 C
* **
85262617 CAGTCTTTCCCTCAAATCTCTAGCTTCACAATTAGGTTTTCTCTTCTCTTTATTCAACTCTTCG
1 CAGTCTTTCCCTCAAATCTCTAGCTTCACAATCAACTTTTCTCTTCTCTTTATTCAACTCTTCG
85262681 ACCTTACAAG
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.18, C:0.28, G:0.08, T:0.45
Consensus pattern (66 bp):
CAGTCTTTCCCTCAAATCTCTAGCTTCACAATCAACTTTTCTCTTCTCTTTATTCAACTCTTCGG
C
Found at i:85271152 original size:34 final size:34
Alignment explanation
Indices: 85271068--85271152 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 34
85271058 TTAGGGCCTT
* *
85271068 AGCCCATTTCAATAACAGCAGCAGCCTGGGCTTG
1 AGCCCATTTCAATAACAACAACAGCCTGGGCTTG
* * * * *
85271102 AGCCCATTTTAGTAACAATAACAGTCTGGGGTTG
1 AGCCCATTTCAATAACAACAACAGCCTGGGCTTG
*
85271136 AGCTCATTTCAATAACA
1 AGCCCATTTCAATAACA
85271153 GTATCAGTGC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (34 bp):
AGCCCATTTCAATAACAACAACAGCCTGGGCTTG
Found at i:85277529 original size:49 final size:49
Alignment explanation
Indices: 85277366--85277724 Score: 564
Period size: 49 Copynumber: 7.4 Consensus size: 49
85277356 TTATCACCTT
* * * * * *
85277366 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
* * *
85277413 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTGTCAC--ATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
85277460 TATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
85277509 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
85277558 TATACACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
85277607 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
* *
85277656 TATACACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCTCATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
85277705 TATACACATTCACATTCATC
1 TATACACTTTCACATTCATC
85277725 GCGTAAAATC
Statistics
Matches: 295, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
47 82 0.28
49 213 0.72
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
Found at i:85300289 original size:65 final size:65
Alignment explanation
Indices: 85300208--85300338 Score: 237
Period size: 65 Copynumber: 2.0 Consensus size: 65
85300198 CCCCTAGGGT
85300208 TAAGGTTGACCTGAATGCATGTAT-GACCGTTACTATTTACTACATGCCATGTTATTATTATCTG
1 TAAGGTTGACCTGAATGCATGT-TCGACCGTTACTATTTACTACATGCCATGTTATTATTATCTG
85300272 A
65 A
*
85300273 TAAGGTTGACCTGAATGCATGTTCGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTCGACCGTTACTATTTACTACATGCCATGTTATTATTATCTGA
85300338 T
1 T
85300339 TCATAGGACT
Statistics
Matches: 64, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
64 1 0.02
65 63 0.98
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTCGACCGTTACTATTTACTACATGCCATGTTATTATTATCTGA
Found at i:85300641 original size:32 final size:33
Alignment explanation
Indices: 85300581--85300644 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
85300571 CTATGGGCCA
85300581 TACTGTTATCTGAAAAAGGGCTAAGGCCCAGTT
1 TACTGTTATCTGAAAAAGGGCTAAGGCCCAGTT
**
85300614 TACTG-TATTCTG-AAAAGGGCTTCGGCCCAGT
1 TACTGTTA-TCTGAAAAAGGGCTAAGGCCCAGT
85300645 ACCCGCTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 19 0.68
33 9 0.32
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (33 bp):
TACTGTTATCTGAAAAAGGGCTAAGGCCCAGTT
Found at i:85301790 original size:34 final size:35
Alignment explanation
Indices: 85301739--85301810 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
85301729 ATTCTGTAGT
*
85301739 TAGGGTAATACTGAAACTGTAGAA-ACTGAGACAG
1 TAGGGTAAAACTGAAACTGTAGAAGACTGAGACAG
* * *
85301773 TAGGG-AAAACTGAAAACTTTAGAAGATTGAGACTG
1 TAGGGTAAAACTG-AAACTGTAGAAGACTGAGACAG
85301808 TAG
1 TAG
85301811 CTAGGATACG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 6 0.19
34 15 0.47
35 11 0.34
ACGTcount: A:0.42, C:0.10, G:0.26, T:0.22
Consensus pattern (35 bp):
TAGGGTAAAACTGAAACTGTAGAAGACTGAGACAG
Found at i:85306470 original size:39 final size:39
Alignment explanation
Indices: 85306389--85306551 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
85306379 TATGGTAACC
* *
85306389 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
85306429 CGCACAATTGCCTTTGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
85306468 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
85306507 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
85306546 CGCACA
1 CGCACA
85306552 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 96 0.86
40 16 0.14
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:85308785 original size:40 final size:40
Alignment explanation
Indices: 85308720--85308967 Score: 365
Period size: 40 Copynumber: 6.2 Consensus size: 40
85308710 TCTTCGGAAT
* ** *
85308720 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
85308759 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
85308799 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
85308839 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
85308879 TTAGCCCGGATATAACAACTCACACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
85308919 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
85308959 TTAGCCCGG
1 TTAGCCCGG
85308968 GTATCATTCA
Statistics
Matches: 190, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 3 0.02
40 186 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:85311249 original size:65 final size:65
Alignment explanation
Indices: 85311168--85311295 Score: 211
Period size: 65 Copynumber: 2.0 Consensus size: 65
85311158 CCCCTAGGGT
* * *
85311168 TAAGGTTGATCTGAATGCATGTTTGACAGTTGCTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTCGACAGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
* *
85311233 TAAGGTTGACCTGAATGTATGTTCGACTGTTACTATTTACTGCATGCCATGTTATTATTATCT
1 TAAGGTTGACCTGAATGCATGTTCGACAGTTACTATTTACTGCATGCCATGTTATTATTATCT
85311296 AATGCATGGG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTCGACAGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:85312758 original size:34 final size:35
Alignment explanation
Indices: 85312707--85312778 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
85312697 ATTCTGTAGT
*
85312707 TAGGGTAATACTGAAACTGTAGAA-ACTGAGACAG
1 TAGGGTAAAACTGAAACTGTAGAAGACTGAGACAG
* *
85312741 TAGGG-AAAACTGAAAACTTTAGAAGACTGAGACTG
1 TAGGGTAAAACTG-AAACTGTAGAAGACTGAGACAG
85312776 TAG
1 TAG
85312779 CTAGGATACG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 6 0.18
34 15 0.45
35 12 0.36
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (35 bp):
TAGGGTAAAACTGAAACTGTAGAAGACTGAGACAG
Found at i:85315943 original size:93 final size:93
Alignment explanation
Indices: 85315784--85315954 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
85315774 GGATGGTTGA
* * * *
85315784 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACATATGGATGCGAATGTCCGACCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCAAACGCCCGACCTCATTGAGT
*
85315849 TGAGTCCGAGTTCGTGAAATGTAACCAG
66 TGAGTCCAAGTTCGTGAAATGTAACCAG
* *
85315877 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCAAACGCCCGACCTCATTGAGT
85315942 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
85315955 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCAAACGCCCGACCTCATTGAGT
TGAGTCCAAGTTCGTGAAATGTAACCAG
Found at i:85321111 original size:57 final size:58
Alignment explanation
Indices: 85321048--85321158 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
85321038 AATTTCACAT
* * *
85321048 ACCTGTATCTGGCCCATTAAGCC-CAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
85321105 ACCTGTATATGGCCCATTAGGCCTAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCCA
85321159 GTTATATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:85321114 original size:29 final size:29
Alignment explanation
Indices: 85321051--85321158 Score: 130
Period size: 29 Copynumber: 3.8 Consensus size: 29
85321041 TTCACATACC
* * *
85321051 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
85321079 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
85321108 TGTATATGGCCCATTAGGCCTAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
85321137 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
85321159 GTTATATTCA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.25
29 49 0.72
30 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:85321354 original size:24 final size:24
Alignment explanation
Indices: 85321327--85321375 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
85321317 TCAGGCAACC
85321327 TATCGTTCTCCCCCTTACAAGTGT
1 TATCGTTCTCCCCCTTACAAGTGT
85321351 TATCGTTCTCCCCCTTACAAGTGT
1 TATCGTTCTCCCCCTTACAAGTGT
85321375 T
1 T
85321376 CGTGTACTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.33, G:0.12, T:0.39
Consensus pattern (24 bp):
TATCGTTCTCCCCCTTACAAGTGT
Found at i:85324540 original size:21 final size:22
Alignment explanation
Indices: 85324507--85324554 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
85324497 GTTTTAGCGA
**
85324507 AAACCCTTCTTAAAAT-AAAAG
1 AAACCCTAATTAAAATAAAAAG
**
85324528 AAACCCTAATTAACTTAAAAAG
1 AAACCCTAATTAAAATAAAAAG
85324550 AAACC
1 AAACC
85324555 TTTCAGTTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.54, C:0.21, G:0.04, T:0.21
Consensus pattern (22 bp):
AAACCCTAATTAAAATAAAAAG
Found at i:85325614 original size:28 final size:28
Alignment explanation
Indices: 85325572--85325657 Score: 118
Period size: 29 Copynumber: 3.0 Consensus size: 28
85325562 TACTTGTATC
*
85325572 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCATATTCATA
*
85325600 TGGCCCATTAGGCCCAAATCATATTTATA
1 TGGCCCATTAGGCCC-AATCATATTCATA
* * *
85325629 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCATATTCATA
85325657 T
1 T
85325658 TCATGCTCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 25 0.49
29 26 0.51
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCATATTCATA
Found at i:85327549 original size:40 final size:40
Alignment explanation
Indices: 85327419--85327605 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
85327409 AAATTGAATG
* * * * * *
85327419 ATATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAATT
* * * ***
85327459 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAATT
* * *
85327499 ACAT-CGGGCTAAGTCCTG-AGGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTATGCTAGTAATT
** * *
85327538 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAATT
*
85327578 CTATCCGGGCTAAGACCCGAAGGCATTT
1 ATATCCGGGCTAAGACCCGAAGGCATTT
85327606 GTGCAAATCG
Statistics
Matches: 114, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
38 3 0.03
39 26 0.23
40 82 0.72
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAATT
Found at i:85327623 original size:40 final size:40
Alignment explanation
Indices: 85327538--85327624 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
85327528 GCTAGTAATT
* * *
85327538 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATG
* * *
85327578 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATG
85327618 ATATCCG
1 ATATCCG
85327625 AGTTAAGTCC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATG
Found at i:85335707 original size:80 final size:79
Alignment explanation
Indices: 85335543--85335722 Score: 222
Period size: 80 Copynumber: 2.3 Consensus size: 79
85335533 AATTGAATGA
* *
85335543 TATCCGGGCTAAGTCCCGAAGACGTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 TATCCGGGCTAAGTCCCGAAGACGTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
*
85335608 TGTGCTAGTGGCTAC
66 TGTGCGAGT-GCTAC
* * * *
85335623 -ATCCGGGCTAAGTCCTGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-A
1 TATCCGGGCTAAGTCCCGAAGAC-GTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
85335686 TTCGTGCGAGT-CATTC
65 TT-GTGCGAGTGC-TAC
*
85335702 TATCCGGGCTAAGACCCGAAG
1 TATCCGGGCTAAGTCCCGAAG
85335723 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 25 0.29
80 59 0.69
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TATCCGGGCTAAGTCCCGAAGACGTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCGAGTGCTAC
Found at i:85335746 original size:40 final size:39
Alignment explanation
Indices: 85335580--85335748 Score: 144
Period size: 40 Copynumber: 4.2 Consensus size: 39
85335570 TGCTGGAAAT
* * *
85335580 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT--CA
* * * * * *
85335620 TACATCCGGGCTAAGTCCTG-AGGACATTTATGCTAGTAA
1 TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCA
* *
85335659 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
* * *
85335699 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
85335739 TGATATCCGG
1 T-ATATCCGG
85335749 TTAAGTCCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 4 0.04
40 97 0.93
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
Found at i:85337963 original size:20 final size:22
Alignment explanation
Indices: 85337927--85337966 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
85337917 TGAAAATGAA
85337927 ATATGATGTGTCATGATTATCG
1 ATATGATGTGTCATGATTATCG
85337949 ATAT-ATGTG-CATGATTAT
1 ATATGATGTGTCATGATTAT
85337967 TCGGATGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 5 0.28
22 4 0.22
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (22 bp):
ATATGATGTGTCATGATTATCG
Found at i:85338056 original size:40 final size:40
Alignment explanation
Indices: 85337976--85338193 Score: 338
Period size: 40 Copynumber: 5.5 Consensus size: 40
85337966 TTCGGATGAC
*
85337976 ATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
85338015 ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
85338055 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
85338095 ATCCGGGCTAAGTCCC-AAGGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAA-GGCATTTGTGCTAGTGACTAT
*
85338135 ATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
85338174 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
85338194 TACTTGGTTT
Statistics
Matches: 169, Mismatches: 6, Indels: 8
0.92 0.03 0.04
Matches are distributed among these distances:
39 72 0.43
40 97 0.57
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:85338143 original size:79 final size:81
Alignment explanation
Indices: 85337976--85338193 Score: 340
Period size: 79 Copynumber: 2.8 Consensus size: 81
85337966 TTCGGATGAC
* *
85337976 ATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACTATATCCGGGCTAAGTCCCGAA-GGCAG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGGCAG
85338039 TTGTGCTAGTGACTAT
66 TTGTGCTAGTGACTAT
*
85338055 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCC-AAGGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGGCAG
85338119 TTGTGCTAGTGACTAT
66 TTGTGCTAGTGACTAT
* *
85338135 ATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACTATATCCGGGCTAAGTCCCGAAGG
85338194 TACTTGGTTT
Statistics
Matches: 130, Mismatches: 5, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
78 10 0.08
79 63 0.48
80 57 0.44
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (81 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGGCAG
TTGTGCTAGTGACTAT
Found at i:85345347 original size:40 final size:38
Alignment explanation
Indices: 85345274--85345403 Score: 174
Period size: 40 Copynumber: 3.3 Consensus size: 38
85345264 TTCAGATGAC
*
85345274 ATCCGGGCT-AGTCCCGAAGGCATGGTGCTAGTGACTAT
1 ATCCGGGCTAAGT-CCGAAGGCATTGTGCTAGTGACTAT
85345312 ATCCGGGCTAAGTCTCGAAGGCAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTC-CGAAGGCA-TTGTGCTAGTGACTAT
* *
85345352 ATCCGGGCTAAGTCCTGAAGGCATTTGTGCTATTGATTA-
1 ATCCGGGCTAAGTCC-GAAGGCA-TTGTGCTAGTGACTAT
85345391 ATCCGGGCTAAGT
1 ATCCGGGCTAAGT
85345404 ATAACATTAT
Statistics
Matches: 84, Mismatches: 4, Indels: 7
0.88 0.04 0.07
Matches are distributed among these distances:
38 10 0.12
39 25 0.30
40 49 0.58
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (38 bp):
ATCCGGGCTAAGTCCGAAGGCATTGTGCTAGTGACTAT
Found at i:85352608 original size:2 final size:2
Alignment explanation
Indices: 85352601--85352643 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
85352591 CATGGGATTC
85352601 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
85352643 T
1 T
85352644 GAAAATGTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:85352731 original size:21 final size:21
Alignment explanation
Indices: 85352707--85352772 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 21
85352697 TGAGGTTGCC
85352707 GTATGGGTTAAATCAACCTTA
1 GTATGGGTTAAATCAACCTTA
*
85352728 GTATTAGGTAGTTAAA--AA-TTTA
1 GTA-T-GG--GTTAAATCAACCTTA
85352750 --ATGGGTTAAATCAACCTTA
1 GTATGGGTTAAATCAACCTTA
85352769 GTAT
1 GTAT
85352773 TAGGCAGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 18
0.63 0.04 0.33
Matches are distributed among these distances:
16 6 0.18
18 4 0.12
19 4 0.12
20 1 0.03
21 5 0.15
22 4 0.12
23 4 0.12
25 6 0.18
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (21 bp):
GTATGGGTTAAATCAACCTTA
Found at i:85352754 original size:41 final size:41
Alignment explanation
Indices: 85352709--85352791 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
85352699 AGGTTGCCGT
*
85352709 ATGGGTTAAATCAACCTTAGTATTAGGTAGTTAAAAATTTA
1 ATGGGTTAAATCAACCTTAGTATTAGGCAGTTAAAAATTTA
85352750 ATGGGTTAAATCAACCTTAGTATTAGGCAGTTAAAAATTTA
1 ATGGGTTAAATCAACCTTAGTATTAGGCAGTTAAAAATTTA
85352791 A
1 A
85352792 GTTAGTTGGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (41 bp):
ATGGGTTAAATCAACCTTAGTATTAGGCAGTTAAAAATTTA
Found at i:85356463 original size:34 final size:35
Alignment explanation
Indices: 85356416--85356536 Score: 100
Period size: 34 Copynumber: 3.5 Consensus size: 35
85356406 TCTAAATGAC
* * * * *
85356416 CTTGTATACTTGGCTACATGTGATGTTTTATTGAA
1 CTTGTATATTTGGCCACATATGATGATTTAGTGAA
*
85356451 CTTGT-TATTTGGCCATATATGATGATTTAGTGAA
1 CTTGTATATTTGGCCACATATGATGATTTAGTGAA
** * * * * *
85356485 CTTGTATATTCAGACATATGTGATGATATAATGAA
1 CTTGTATATTTGGCCACATATGATGATTTAGTGAA
*
85356520 CCTTGTGTATTTGGCCA
1 -CTTGTATATTTGGCCA
85356537 TACAAGTAAG
Statistics
Matches: 68, Mismatches: 16, Indels: 3
0.78 0.18 0.03
Matches are distributed among these distances:
34 28 0.41
35 28 0.41
36 12 0.18
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (35 bp):
CTTGTATATTTGGCCACATATGATGATTTAGTGAA
Found at i:85356509 original size:35 final size:34
Alignment explanation
Indices: 85356433--85356530 Score: 97
Period size: 35 Copynumber: 2.8 Consensus size: 34
85356423 ACTTGGCTAC
* * ** *
85356433 ATGTGATGTTTTATTGAACTTGTTATTTGGCCAT
1 ATGTGATGATTTAATGAACTTGTTATTCAGACAT
* *
85356467 ATATGATGATTTAGTGAACTTGTATATTCAGACAT
1 ATGTGATGATTTAATGAACTTGT-TATTCAGACAT
*
85356502 ATGTGATGATATAATGAACCTTGTGTATT
1 ATGTGATGATTTAATGAA-CTTGT-TATT
85356531 TGGCCATACA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
34 20 0.38
35 23 0.44
36 9 0.17
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (34 bp):
ATGTGATGATTTAATGAACTTGTTATTCAGACAT
Found at i:85357082 original size:36 final size:36
Alignment explanation
Indices: 85357040--85357112 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 36
85357030 CGACCTTGAA
* *
85357040 TATGTATAATTTAAGCCAT-ATGAAAATGGCTTAATC
1 TATGTATAACTTAAGCCATGA-GAAAATAGCTTAATC
85357076 TATGTATAACTTAAGCCATGAGAAAATAGCTTAATC
1 TATGTATAACTTAAGCCATGAGAAAATAGCTTAATC
85357112 T
1 T
85357113 CCATGATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 33 0.97
37 1 0.03
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (36 bp):
TATGTATAACTTAAGCCATGAGAAAATAGCTTAATC
Found at i:85358455 original size:43 final size:43
Alignment explanation
Indices: 85358391--85358583 Score: 287
Period size: 43 Copynumber: 4.5 Consensus size: 43
85358381 AAAAACGCCA
* *
85358391 TAAAAGATCATGACTTTTAGCGGCGTTTGTGGGGGAAGCGCCGT
1 TAAAAG-TCATGGCTTTTAGCGGCGTTTGTGGGGGAAGCGCCGC
* *
85358435 TAAAAGTCATGGCTTATAGCGGCGTTTGTGGGGGAAGAGCCGC
1 TAAAAGTCATGGCTTTTAGCGGCGTTTGTGGGGGAAGCGCCGC
*
85358478 TAAAAGTCATGGCTTTTAGCGGCGTTTGTGGTGGAAGCGCCGC
1 TAAAAGTCATGGCTTTTAGCGGCGTTTGTGGGGGAAGCGCCGC
* * *
85358521 TAAAAGTCATCGCTTTTAGCGGCGTTTGTGAGGGAAGCACCGC
1 TAAAAGTCATGGCTTTTAGCGGCGTTTGTGGGGGAAGCGCCGC
* *
85358564 TAAAGGCCATGGCTTTTAGC
1 TAAAAGTCATGGCTTTTAGC
85358584 ATGAAATCCA
Statistics
Matches: 135, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
43 129 0.96
44 6 0.04
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.26
Consensus pattern (43 bp):
TAAAAGTCATGGCTTTTAGCGGCGTTTGTGGGGGAAGCGCCGC
Found at i:85359326 original size:13 final size:14
Alignment explanation
Indices: 85359300--85359328 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
85359290 ACTAACGACG
85359300 AATTAAACCATTAT
1 AATTAAACCATTAT
85359314 AATTAAA-CATTAT
1 AATTAAACCATTAT
85359327 AA
1 AA
85359329 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:85364476 original size:34 final size:36
Alignment explanation
Indices: 85364390--85364497 Score: 166
Period size: 36 Copynumber: 3.1 Consensus size: 36
85364380 AAGTAAGTTT
* * *
85364390 TGTAAGTTATATAAGTTATGTTATGATATACATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTA
*
85364426 TGTAAGGTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTA
85364462 TGT-A-TTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTA
85364496 TG
1 TG
85364498 ATATATATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
34 31 0.46
35 1 0.01
36 35 0.52
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.47
Consensus pattern (36 bp):
TGTAAGTTATGTAAGTTATGATATGATATATATTTA
Found at i:85364497 original size:52 final size:53
Alignment explanation
Indices: 85364441--85364605 Score: 174
Period size: 52 Copynumber: 3.1 Consensus size: 53
85364431 GGTATGTAAG
85364441 TTATGATATGATATATATTTATGT-A-TTATGTAAGTTATGATATGATATATAT
1 TTATGATAT-ATATATATTTATGTAAGTTATGTAAGTTATGATATGATATATAT
* * * *
85364493 TTATGATATATATTTATGTATTATGTAAGGTATATAAGTTATTATATGATATATAT
1 TTATGATATATA--TATAT-TTATGTAAGTTATGTAAGTTATGATATGATATATAT
* * * * ** *
85364549 TTATGTTTTTTGTA-AGGTATATAAGTTATGTAAGTTATGATATGATATATAT
1 TTATGATATATATATATTTATGTAAGTTATGTAAGTTATGATATGATATATAT
85364601 TTATG
1 TTATG
85364606 TAAGTTATTA
Statistics
Matches: 93, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
51 3 0.03
52 45 0.48
53 4 0.04
54 8 0.09
55 1 0.01
56 32 0.34
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (53 bp):
TTATGATATATATATATTTATGTAAGTTATGTAAGTTATGATATGATATATAT
Found at i:85364499 original size:13 final size:13
Alignment explanation
Indices: 85364481--85364510 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
85364471 TAAGTTATGA
85364481 TATGATATATATT
1 TATGATATATATT
85364494 TATGATATATATT
1 TATGATATATATT
85364507 TATG
1 TATG
85364511 TATTATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
TATGATATATATT
Found at i:85364502 original size:47 final size:46
Alignment explanation
Indices: 85364423--85364630 Score: 193
Period size: 43 Copynumber: 4.6 Consensus size: 46
85364413 TGATATACAT
*
85364423 TTATGTAAGGTATGTAAG-T-TATGA--TATGATATATATTTATGTA
1 TTATGTAAGGTATATAAGATATAT-ATTTATGATATATATTTATGTA
* *
85364466 TTATGTAAGTTATGATATGATATATATTTATGATATATATTTATGTA
1 TTATGTAAGGTAT-ATAAGATATATATTTATGATATATATTTATGTA
* *
85364513 TTATGTAAGGTATATAAG-T-TAT-TATATGATATATATTTATGTT
1 TTATGTAAGGTATATAAGATATATATTTATGATATATATTTATGTA
* * * * *
85364556 TTTTGTAAGGTATATAAGTTATGTAAGTTATGATATGATA--TATAT-
1 TTATGTAAGGTATATAAGATATAT-ATTTATGATAT-ATATTTATGTA
* *
85364601 TTATGTAAGTTATTATATGATATATATTTA
1 TTATGTAAGGTA-TATAAGATATATATTTA
85364631 ACATTAAGAT
Statistics
Matches: 136, Mismatches: 18, Indels: 20
0.78 0.10 0.11
Matches are distributed among these distances:
43 48 0.35
44 7 0.05
45 19 0.14
46 20 0.15
47 39 0.29
48 3 0.02
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.50
Consensus pattern (46 bp):
TTATGTAAGGTATATAAGATATATATTTATGATATATATTTATGTA
Found at i:85364563 original size:43 final size:43
Alignment explanation
Indices: 85364423--85364577 Score: 211
Period size: 43 Copynumber: 3.5 Consensus size: 43
85364413 TGATATACAT
* *
85364423 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGGTATATAAGTTATTATATGATATATATTTATGTA
* * *
85364466 TTATGTAAGTTATGATATGATATATATTTATGATATATATTTATGTA
1 TTATGTAAGGTAT-ATAAG-T-TAT-TATATGATATATATTTATGTA
*
85364513 TTATGTAAGGTATATAAGTTATTATATGATATATATTTATGTT
1 TTATGTAAGGTATATAAGTTATTATATGATATATATTTATGTA
*
85364556 TTTTGTAAGGTATATAAGTTAT
1 TTATGTAAGGTATATAAGTTAT
85364578 GTAAGTTATG
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
43 52 0.53
44 6 0.06
45 2 0.02
46 7 0.07
47 31 0.32
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (43 bp):
TTATGTAAGGTATATAAGTTATTATATGATATATATTTATGTA
Found at i:85364587 original size:90 final size:91
Alignment explanation
Indices: 85364423--85364596 Score: 244
Period size: 90 Copynumber: 1.9 Consensus size: 91
85364413 TGATATACAT
* * *
85364423 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGATATGATA
1 TTATGTAAGGTATATAAGTTATGATATGATATATATTTATGTATTATGTAAGGTATGATAAGATA
*
85364488 TATATTTATGATAT-ATATTTATGTA
66 TATAGTTATGATATGATATTTATGTA
* * * *
85364513 TTATGTAAGGTATATAAGTTATTATATGATATATATTTATGTTTTTTGTAAGGTAT-ATAAGTTA
1 TTATGTAAGGTATATAAGTTATGATATGATATATATTTATGTATTATGTAAGGTATGATAAGATA
*
85364577 TGTAAGTTATGATATGATAT
66 TAT-AGTTATGATATGATAT
85364597 ATATTTATGT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
89 8 0.11
90 61 0.84
91 4 0.05
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (91 bp):
TTATGTAAGGTATATAAGTTATGATATGATATATATTTATGTATTATGTAAGGTATGATAAGATA
TATAGTTATGATATGATATTTATGTA
Found at i:85365048 original size:168 final size:170
Alignment explanation
Indices: 85364660--85365198 Score: 893
Period size: 169 Copynumber: 3.2 Consensus size: 170
85364650 TTCCCTTTAA
* * *
85364660 AAAAATTACTTTAATTAAATAA-AATTAAATAAATTAATCCAAAATATGTAATTTAAGAGAAATT
1 AAAATTTATTTTAATTAAATAATATTTAAATAAATTAATCCAAAATATGTAATTTAA-A-AAATT
85364724 GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATAAAAAATAAATAAT
64 GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATAAAAAATAAATAAT
*
85364789 AAAAATAAAATTTGACAATGTGGAAAATCAC--ATGGAAAAT
129 AAAAATAAAATTTGACGATGTGGAAAATCACATATGGAAAAT
85364829 AAAATTTATTTTAATTAAATAATATTTAAATAAATTAATCCAAAATATGTAATTT-AAAAATTGT
1 AAAATTTATTTTAATTAAATAATATTTAAATAAATTAATCCAAAATATGTAATTTAAAAAATTGT
85364893 G-ATTAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCAT-AAAAATAAATAATA
66 GTA-TAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATAAAAAATAAATAATA
85364956 AAAATAAAATTTGACGATGTGGAAAATCACATATGGAAAAT
130 AAAATAAAATTTGACGATGTGGAAAATCACATATGGAAAAT
* *
85364997 AAAATTTATTTTACTTAAATAATATTTAAATAAATTAATCCAAAGTATGTAATTTAAAAAATTGT
1 AAAATTTATTTTAATTAAATAATATTTAAATAAATTAATCCAAAATATGTAATTTAAAAAATTGT
* *
85365062 GTATAAAAAGTTGAAAATCGTATAAGATGAAATGTTAACTTTGTTCCATAAAAAATAAATAATAA
66 GTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATAAAAAATAAATAATAA
*
85365127 AAATAAAATTTGATGATGTGGAAAAT--CATATGG-AAA-
131 AAATAAAATTTGACGATGTGGAAAATCACATATGGAAAAT
85365163 AAAA-TTATTTTAATTAAATAATATTTAAATAAATTA
1 AAAATTTATTTTAATTAAATAATATTTAAATAAATTA
85365199 TTTTAATTAA
Statistics
Matches: 353, Mismatches: 10, Indels: 18
0.93 0.03 0.05
Matches are distributed among these distances:
165 31 0.09
166 48 0.14
167 57 0.16
168 70 0.20
169 75 0.21
170 72 0.20
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (170 bp):
AAAATTTATTTTAATTAAATAATATTTAAATAAATTAATCCAAAATATGTAATTTAAAAAATTGT
GTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATAAAAAATAAATAATAA
AAATAAAATTTGACGATGTGGAAAATCACATATGGAAAAT
Found at i:85365181 original size:29 final size:29
Alignment explanation
Indices: 85365149--85365215 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
85365139 ATGATGTGGA
*
85365149 AAATCATATGGAAAAAAATTATTTTAATT
1 AAATAATATGGAAAAAAATTATTTTAATT
** *
85365178 AAATAATATTTAAATAAATTATTTTAATT
1 AAATAATATGGAAAAAAATTATTTTAATT
85365207 AAATAATAT
1 AAATAATAT
85365216 TTAAATAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (29 bp):
AAATAATATGGAAAAAAATTATTTTAATT
Found at i:85365195 original size:15 final size:15
Alignment explanation
Indices: 85365171--85365225 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
85365161 AAAAAATTAT
*
85365171 TTTAATTAAATAATA
1 TTTAAATAAATAATA
*
85365186 TTTAAATAAATTAT-
1 TTTAAATAAATAATA
*
85365200 TTTAATTAAATAATA
1 TTTAAATAAATAATA
85365215 TTTAAATAAAT
1 TTTAAATAAAT
85365226 TAATCTAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
14 12 0.35
15 22 0.65
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TTTAAATAAATAATA
Found at i:85365216 original size:29 final size:29
Alignment explanation
Indices: 85365164--85365227 Score: 128
Period size: 29 Copynumber: 2.2 Consensus size: 29
85365154 ATATGGAAAA
85365164 AAATTATTTTAATTAAATAATATTTAAAT
1 AAATTATTTTAATTAAATAATATTTAAAT
85365193 AAATTATTTTAATTAAATAATATTTAAAT
1 AAATTATTTTAATTAAATAATATTTAAAT
85365222 AAATTA
1 AAATTA
85365228 ATCTAAATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
AAATTATTTTAATTAAATAATATTTAAAT
Found at i:85365543 original size:24 final size:24
Alignment explanation
Indices: 85365508--85365554 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
85365498 TTAACTTAAA
* *
85365508 TGATAAAGCGGAAGATAATATTTG
1 TGATAAAACGGAAGAGAATATTTG
*
85365532 TGATAAAACGGACGAGAATATTT
1 TGATAAAACGGAAGAGAATATTT
85365555 CAATAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.06, G:0.23, T:0.28
Consensus pattern (24 bp):
TGATAAAACGGAAGAGAATATTTG
Found at i:85368261 original size:14 final size:14
Alignment explanation
Indices: 85368244--85368315 Score: 58
Period size: 14 Copynumber: 5.1 Consensus size: 14
85368234 AAATTTATTT
85368244 TTTAGAATTTAGGG
1 TTTAGAATTTAGGG
* **
85368258 TTTATG-GTTTAAGAC
1 TTTA-GAATTT-AGGG
*
85368273 TTTATG-ATTTATGG
1 TTTA-GAATTTAGGG
*
85368287 TTTAGAATTTAGAG
1 TTTAGAATTTAGGG
85368301 TTTAGAATTTAGGG
1 TTTAGAATTTAGGG
85368315 T
1 T
85368316 CTATAGTTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
13 1 0.02
14 32 0.71
15 12 0.27
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (14 bp):
TTTAGAATTTAGGG
Found at i:85368565 original size:65 final size:65
Alignment explanation
Indices: 85368344--85368562 Score: 226
Period size: 65 Copynumber: 3.4 Consensus size: 65
85368334 GAGGTTATGA
* * *
85368344 TAGGGTTTGGGGTTTAAGGGTTAGGGTTTAGTGTTTGGATTTTTAAGGGTTTATGATTTGAGATT
1 TAGGGTTTGGGGTTTAAGGGTTAGAGTTTAGTGTTTAGAATTTTAAGGGTTTATGATTTGAGATT
** * * * * * *
85368409 TAGGGTTTACGGTGTAGGGGTTAGGGTTTATTGTTTAGAGTTTTAAAGGTTTATGATTTGAGATT
1 TAGGGTTTGGGGTTTAAGGGTTAGAGTTTAGTGTTTAGAATTTTAAGGGTTTATGATTTGAGATT
* ** * * * * *
85368474 TAGGGTCTGATGTTGAATGGGTTATTAG-TTAGTGTTTATAATTTTATGGGTTTACGA-TTGAGA
1 TAGGGTTTGGGGTTTAA-GGGTTA-GAGTTTAGTGTTTAGAATTTTAAGGGTTTATGATTTGAGA
85368537 TT
64 TT
85368539 TAGGGTTTGGGGTTTAAAGGGTTA
1 TAGGGTTTGGGGTTT-AAGGGTTA
85368563 TTAATTTAAG
Statistics
Matches: 124, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
65 92 0.74
66 31 0.25
67 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (65 bp):
TAGGGTTTGGGGTTTAAGGGTTAGAGTTTAGTGTTTAGAATTTTAAGGGTTTATGATTTGAGATT
Found at i:85372856 original size:46 final size:46
Alignment explanation
Indices: 85372761--85372881 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 46
85372751 CTTGTAGCCC
* * * * *
85372761 ATGCATGTCCCAGACATGTCTTACACTAGCTTATGCCTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCCTACGCCTCAAGACAG
* * *
85372807 ATGCATGTCCCAAACATGTCTTACACTAGCCCT-CGTCTCAATACAG
1 ATGCATGTCCCAGACATGTCTTACACTAG-CCTACGCCTCAAGACAG
*
85372853 ATGCCATGTCTCAGACATGGTCTTACACT
1 ATG-CATGTCCCAGACAT-GTCTTACACT
85372882 GGCTCTCATA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 38 0.61
47 14 0.23
48 10 0.16
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCCTACGCCTCAAGACAG
Found at i:85376504 original size:29 final size:29
Alignment explanation
Indices: 85376472--85376660 Score: 256
Period size: 29 Copynumber: 6.5 Consensus size: 29
85376462 ATAGTGAATC
85376472 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
85376501 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
85376530 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
85376560 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* * *
85376589 CGCACACTTAGTGCTGTATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
* * * * * *
85376617 AGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAGCT
85376647 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85376661 CAATCTTGTC
Statistics
Matches: 146, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
27 2 0.01
28 20 0.14
29 78 0.53
30 45 0.31
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:85376569 original size:59 final size:59
Alignment explanation
Indices: 85376472--85376610 Score: 262
Period size: 59 Copynumber: 2.4 Consensus size: 59
85376462 ATAGTGAATC
85376472 CGCACACTTAGTGCTATAT-ATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
85376530 CGCACACTTAGTGCTATATAATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
*
85376589 CGCACACTTAGTGCTGTATAAT
1 CGCACACTTAGTGCTATATAAT
85376611 CAAACTAGCA
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
58 19 0.24
59 60 0.76
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATAATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
Found at i:85376703 original size:42 final size:42
Alignment explanation
Indices: 85376639--85376745 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
85376629 GCTGTACAAT
* *
85376639 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACTGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
85376681 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
85376723 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
85376746 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.31
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:85382687 original size:21 final size:21
Alignment explanation
Indices: 85382663--85382707 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
85382653 ATCATAGCTA
85382663 CATTTTAAGTTACGTCATTTG
1 CATTTTAAGTTACGTCATTTG
*
85382684 CATTTTAAGTTATGTCATTTG
1 CATTTTAAGTTACGTCATTTG
85382705 CAT
1 CAT
85382708 AATGTACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.49
Consensus pattern (21 bp):
CATTTTAAGTTACGTCATTTG
Found at i:85384229 original size:40 final size:39
Alignment explanation
Indices: 85384184--85384313 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
85384174 CGGAATACAA
85384184 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
85384224 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
85384264 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
85384304 CCGGATATAA
1 CCGGATATAA
85384314 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:85392196 original size:40 final size:39
Alignment explanation
Indices: 85392151--85392280 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
85392141 CGGAATACAA
85392151 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
85392191 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
85392231 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
85392271 CCGGATATAA
1 CCGGATATAA
85392281 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:85394147 original size:48 final size:48
Alignment explanation
Indices: 85394070--85394295 Score: 194
Period size: 48 Copynumber: 4.8 Consensus size: 48
85394060 CACATGGTAG
** * * * *
85394070 GATGCCAATGCCAAATCCCGGATAGGGTCTTACATGGGATCACTTATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * ** *
85394118 GATGCCAATGCCATGTCCTAGACATGGTCTTGCATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * *
85394166 GATGGCAATGTCATGTCTCAGACATAGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * ** * *
85394214 GATGCCGAT---A-G-CCCA-ACTATGGTCTTACACGAAATTACATATT
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* *
85394257 GATGCCAAAGCCATGTCCCAGACAGGGTCTTACATGGGA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
85394296 CCGTACATAA
Statistics
Matches: 136, Mismatches: 35, Indels: 14
0.74 0.19 0.08
Matches are distributed among these distances:
42 2 0.01
43 29 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 99 0.73
49 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:85397381 original size:22 final size:22
Alignment explanation
Indices: 85397356--85397399 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
85397346 GGTCCCGATA
*
85397356 TCTATCATTTCTGATCGTGATC
1 TCTATCATTTCTGATCATGATC
85397378 TCTATCATTTCTGATCATGATC
1 TCTATCATTTCTGATCATGATC
85397400 CGAGGTTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.45
Consensus pattern (22 bp):
TCTATCATTTCTGATCATGATC
Found at i:85399495 original size:44 final size:44
Alignment explanation
Indices: 85399412--85399531 Score: 138
Period size: 44 Copynumber: 2.8 Consensus size: 44
85399402 GTACAACGCC
* * **
85399412 AACGTCCCAGACGTGGCCTTACATGT-AATCACATGTCGATGC-
1 AACGTCCCAGACGTGGTCTTACACGTAAATCACAAATCGATGCG
* * *
85399454 CACTGTCCCAGACATGGTCTTATACGTAAATCACAAATCGATGCG
1 AAC-GTCCCAGACGTGGTCTTACACGTAAATCACAAATCGATGCG
*
85399499 AACGTCCCAGATGTGGTCTTACACG-AAATCACA
1 AACGTCCCAGACGTGGTCTTACACGTAAATCACA
85399532 TATTAGAATC
Statistics
Matches: 64, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
42 2 0.03
43 27 0.42
44 33 0.52
45 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AACGTCCCAGACGTGGTCTTACACGTAAATCACAAATCGATGCG
Found at i:85400427 original size:20 final size:18
Alignment explanation
Indices: 85400388--85400423 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
85400378 CATTTCATGT
*
85400388 TTATTATATTTAATTACA
1 TTATAATATTTAATTACA
85400406 TTATAATATATTAATTAC
1 TTATAATAT-TTAATTAC
85400424 CATTTTAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (18 bp):
TTATAATATTTAATTACA
Found at i:85400888 original size:73 final size:73
Alignment explanation
Indices: 85400789--85400934 Score: 274
Period size: 73 Copynumber: 2.0 Consensus size: 73
85400779 TGTAAAACAC
85400789 CATTGTATTGGTCTGAATTGAATGAATTCAAAATGGTGGGAATTGATTTGATATGAGAAACTGAA
1 CATTGTATTGGTCTGAATTGAATGAATTCAAAATGGTGGGAATTGATTTGATATGAGAAACTGAA
85400854 GATAAAGT
66 GATAAAGT
* *
85400862 CATTGTATTGGTCTGAATTGAGTGAATTCAAAATGGTGGGAATTGATTTGATATGAGACACTGAA
1 CATTGTATTGGTCTGAATTGAATGAATTCAAAATGGTGGGAATTGATTTGATATGAGAAACTGAA
85400927 GATAAAGT
66 GATAAAGT
85400935 TTGAATAATT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.33
Consensus pattern (73 bp):
CATTGTATTGGTCTGAATTGAATGAATTCAAAATGGTGGGAATTGATTTGATATGAGAAACTGAA
GATAAAGT
Found at i:85402817 original size:35 final size:35
Alignment explanation
Indices: 85402751--85402898 Score: 161
Period size: 35 Copynumber: 4.2 Consensus size: 35
85402741 ACTCTCTGTT
** * *
85402751 TTGGTGTGTTTCATATGGATTAGATCTTATGAGCA
1 TTGGTGTGTTTCGGATGGATTAGCTCATATGAGCA
* * *
85402786 TTGGTGTGTTTTGGATGGTTTAGCTCATATGAGAA
1 TTGGTGTGTTTCGGATGGATTAGCTCATATGAGCA
* * * * *
85402821 TTGGCGTGTTTCGGATGGTTTCGTTTATATGAGCA
1 TTGGTGTGTTTCGGATGGATTAGCTCATATGAGCA
* *
85402856 TTGGTGTGTTTCGGATGGATTAACTCTTATGAGCA
1 TTGGTGTGTTTCGGATGGATTAGCTCATATGAGCA
85402891 TTTGGTGT
1 -TTGGTGT
85402899 TTTTTGTTTG
Statistics
Matches: 92, Mismatches: 20, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
35 85 0.92
36 7 0.08
ACGTcount: A:0.18, C:0.09, G:0.30, T:0.43
Consensus pattern (35 bp):
TTGGTGTGTTTCGGATGGATTAGCTCATATGAGCA
Found at i:85411655 original size:39 final size:39
Alignment explanation
Indices: 85411601--85411762 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
85411591 ATTTGATGTG
85411601 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
85411640 TATCCGGACTTAGGGTCCGCA-GCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
85411678 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * *
85411717 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
85411756 TGTCCGG
1 TATCCGG
85411763 GCTAAAGTCC
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
38 37 0.32
39 79 0.68
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:85411728 original size:77 final size:78
Alignment explanation
Indices: 85411601--85411752 Score: 270
Period size: 77 Copynumber: 2.0 Consensus size: 78
85411591 ATTTGATGTG
* *
85411601 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCA-GCTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
*
85411665 TGTGCTGGAATTA
66 CGTGCTGGAATTA
85411678 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
85411743 CGTGCTGGAA
66 CGTGCTGGAA
85411753 ATATGTCCGG
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
77 58 0.82
78 13 0.18
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (78 bp):
TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
CGTGCTGGAATTA
Found at i:85411776 original size:39 final size:39
Alignment explanation
Indices: 85411601--85411789 Score: 193
Period size: 39 Copynumber: 4.9 Consensus size: 39
85411591 ATTTGATGTG
** * *
85411601 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
** * *
85411640 TATCCGGACTTAGGGTCCGCA-GCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
* ** * *
85411678 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
*
85411717 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
* * * *
85411756 TGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGG
1 TATCCGGACTTAAAGT-CCGCAGGCTACGTGCTGG
85411790 TATTATACCG
Statistics
Matches: 138, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
38 42 0.30
39 96 0.70
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
Found at i:85411827 original size:38 final size:38
Alignment explanation
Indices: 85411617--85411832 Score: 156
Period size: 39 Copynumber: 5.6 Consensus size: 38
85411607 GACTTAGGGT
* **
85411617 CCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGT-
1 CCGCAGGCTATGTGCTGGAATTATA-CCGG-GTTAAAGTC
** **
85411656 CCGCA-GCTATGTGCTGGAATTATATCCAGACTTAGGGT-
1 CCGCAGGCTATGTGCTGGAATTATA-CC-GGGTTAAAGTC
* *
85411694 CCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGT-
1 CCGCAGGCTATGTGCTGGAATTATA-CCGG-GTTAAAGTC
* * * *
85411733 CCGCAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTC
1 CCGCAGGCTATGTGCTGGAATTAT-ACCGGGTTAAAGTC
* * *
85411772 CCGCAGGCT-TCGAGCTGGTATTATACCGGGTTTAAATTC
1 CCGCAGGCTAT-GTGCTGGAATTATACCGGG-TTAAAGTC
85411811 CCGCAGGCT-TGTGCTGGTAATT
1 CCGCAGGCTATGTGCTGG-AATT
85411833 GGTTTCAAGT
Statistics
Matches: 151, Mismatches: 18, Indels: 16
0.82 0.10 0.09
Matches are distributed among these distances:
38 52 0.34
39 99 0.66
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (38 bp):
CCGCAGGCTATGTGCTGGAATTATACCGGGTTAAAGTC
Found at i:85416460 original size:63 final size:64
Alignment explanation
Indices: 85416378--85416498 Score: 226
Period size: 63 Copynumber: 1.9 Consensus size: 64
85416368 TGTGATACGG
85416378 GATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGCGATAC
1 GATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGCGATAC
*
85416442 GATGTAT-CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATG
1 GATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATG
85416499 AGTGATTCCA
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
63 49 0.88
64 7 0.12
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (64 bp):
GATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGCGATAC
Found at i:85416578 original size:66 final size:67
Alignment explanation
Indices: 85416449--85416578 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
85416439 TACGATGTAT
*
85416449 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
85416514 AGGACA
62 AGGACA
* *
85416520 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
85416579 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:85424025 original size:63 final size:66
Alignment explanation
Indices: 85423902--85424091 Score: 251
Period size: 63 Copynumber: 2.8 Consensus size: 66
85423892 ATACTATATA
85423902 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATAC-GGATGTA-CCCATGTAGACAAGAGAGCTACGTGAGAGATA
85423967 AAT
64 AAT
85423970 GTAGCTAGGTCACATGTGTGATA-GGATGTA-CC-TGTAGACAAGAGAGCTACGTGAGAGATAAA
1 GTAGCTAGGTCACATGTGTGATACGGATGTACCCATGTAGACAAGAGAGCTACGTGAGAGATAAA
85424032 T
66 T
* * * * *
85424033 GTAGCTAGGTCGCATGAGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCACATGTGTGA-T--ACG-GATGTAC-CCATGTAGACAAGAGAGCTACG
85424092 AGATAAATCG
Statistics
Matches: 110, Mismatches: 4, Indels: 13
0.87 0.03 0.10
Matches are distributed among these distances:
63 50 0.45
64 3 0.03
66 8 0.07
67 1 0.01
68 27 0.25
70 2 0.02
71 19 0.17
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (66 bp):
GTAGCTAGGTCACATGTGTGATACGGATGTACCCATGTAGACAAGAGAGCTACGTGAGAGATAAA
T
Found at i:85427809 original size:40 final size:40
Alignment explanation
Indices: 85427764--85427930 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
85427754 CGGAATATAA
85427764 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
85427804 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
85427844 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
85427884 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
85427923 CCGGATAT
1 CCGGATAT
85427931 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:85431159 original size:40 final size:40
Alignment explanation
Indices: 85431114--85431278 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
85431104 CGGAATATAA
*
85431114 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
85431154 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
85431194 CCGG--ATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
85431232 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
85431271 CCGGATAT
1 CCGGATAT
85431279 CATTCAATTT
Statistics
Matches: 101, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
38 30 0.30
39 13 0.13
40 57 0.56
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:85431262 original size:78 final size:77
Alignment explanation
Indices: 85431130--85431277 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
85431120 ATAACCATGT
*
85431130 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
85431195 CGGATAGCCACTA
65 CGGATAGCCACTA
* * ** * *
85431208 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
85431271 CCGGATA
64 CCGGATA
85431278 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAGCCACTA
Found at i:85435772 original size:50 final size:50
Alignment explanation
Indices: 85435657--85436089 Score: 401
Period size: 50 Copynumber: 8.6 Consensus size: 50
85435647 ATTGTGAGAA
* * *
85435657 CACATGTGTA-TACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
*
85435708 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * *
85435758 CGCATGTGTAGTACTAAGTGCAGGTTACTATGCGTACCTGATAGTTTCGAG-
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAG-GT
* * *
85435809 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* ** * *
85435859 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATTGATAGGC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * * *
85435909 CGCATGTGTAGTATTAAGTAG-AGGCTACTATGCGTACC-CATTAACTTCGAT
1 CACATGTGTAGTACTAAGT-GCAGGCTACTACGTGTACCAGATT--GTTAGGT
* * * * * * *
85435960 CACGTGTGTAGTACTAAATGCAGGCTACTACATGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * *
85436010 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
*
85436060 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
85436090 TACGTACCAG
Statistics
Matches: 311, Mismatches: 60, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
48 3 0.01
49 7 0.02
50 197 0.63
51 80 0.26
52 24 0.08
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:85435823 original size:101 final size:99
Alignment explanation
Indices: 85435712--85436097 Score: 386
Period size: 101 Copynumber: 3.8 Consensus size: 99
85435702 TTAGGTCACG
*
85435712 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGT
* * *
85435777 GCAGGTTACTATGCGTACCTGATAGTTTCGAG-CACA
66 GCAGGCTACTATACGTACCTGAT-G-AT-GAGCCACA
* * *
85435813 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGT
** *
85435878 GCAGGCTACTATGTGTA-CTGGATTGAT-AGGCCGCA
66 GCAGGCTACTATACGTACCT-GA-TGATGA-GCCACA
* * * * * * * *
85435913 TGTGTAGTATTAAGTAG-AGGCTACTATGCGTACC-CATTAACTTCGATCACGTGTGTAGTACTA
1 TGTGTAGTACTAAGT-GCAGGCTACTACGTGTACCAGATT--GTTAGGTCACATGTGTAGTACTA
* * * * * * * *
85435976 AATGCAGGCTACTACATGTATCAGATGGATAAGTCACG
63 AGTGCAGGCTACTATACGTACCTGAT-GATGAGCCACA
* * *
85436014 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGT
85436079 GCAGGCTACTATACGTACC
66 GCAGGCTACTATACGTACC
85436098 AGAGAGCTTC
Statistics
Matches: 232, Mismatches: 41, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
98 1 0.00
99 3 0.01
100 71 0.31
101 151 0.65
102 6 0.03
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGT
GCAGGCTACTATACGTACCTGATGATGAGCCACA
Found at i:85435982 original size:151 final size:151
Alignment explanation
Indices: 85435706--85436097 Score: 590
Period size: 151 Copynumber: 2.6 Consensus size: 151
85435696 ACAGTTTTAG
*
85435706 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
* * ** *
85435771 CTAAGTGCAGGTTACTATGCGTACCTGATAGTTTCGAGCACATGTGTAGTACTAAGTGCAGGCTA
66 CTAAGTGCAGGCTACTATGCGTACCTCATAACTTCGAGCACATGTGTAGTACTAAATGCAGGCTA
* *
85435836 CTACGTGTATCAGATGGTTAA
131 CTACATGTATCAGATGGATAA
* * ** *
85435857 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATTGATAGGCCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
* * *
85435922 TTAAGTAG-AGGCTACTATGCGTACC-CATTAACTTCGATCACGTGTGTAGTACTAAATGCAGGC
66 CTAAGT-GCAGGCTACTATGCGTACCTCA-TAACTTCGAGCACATGTGTAGTACTAAATGCAGGC
85435985 TACTACATGTATCAGATGGATAA
129 TACTACATGTATCAGATGGATAA
*
85436008 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
*
85436073 CTAAGTGCAGGCTACTATACGTACC
66 CTAAGTGCAGGCTACTATGCGTACC
85436098 AGAGAGCTTC
Statistics
Matches: 214, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
150 2 0.01
151 211 0.99
152 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCTCATAACTTCGAGCACATGTGTAGTACTAAATGCAGGCTA
CTACATGTATCAGATGGATAA
Found at i:85436911 original size:179 final size:177
Alignment explanation
Indices: 85436657--85437009 Score: 512
Period size: 179 Copynumber: 2.0 Consensus size: 177
85436647 TCCAAGATCT
* *
85436657 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTGTCAGACTGTGAAATAGGGTTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTGTCAGACAGTGAAATAGGGGTA
* ** * *
85436722 TCTTTAATGAATAAA-TGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTTATAGTAAGAATA
66 ACTTTAATGAATAAACTGTACTAATTGAAT-AA--AAAAATTCTAAAAATTTTATAGTAAGAATA
* * * *
85436786 TATGTGAGTCTATTTTCTGGGAAAATT-AGCAGTTCTTAATTTGGAGTCCC
128 TATGTAAGTCTAGTTTCTGAGAAAATTAAG-AGATCTTAATTTGGAGTCCC
* * *
85436836 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGTTCGGAACTGTTAGACAGTGAAATAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTGTCAGACAGTGAAATAGGGGTA
*
85436901 ACTTTAATGAATAAACTGTACTAATTGAATAAAAAAATTCTAAAAATTTTATGGTAAGAATATAT
66 ACTTTAATGAATAAACTGTACTAATTGAATAAAAAAATTCTAAAAATTTTATAGTAAGAATATAT
*
85436966 GTAAGTCTAGTTTCTGAGAAAATTAAGGGATCTTAATTTGGAGT
131 GTAAGTCTAGTTTCTGAGAAAATTAAGAGATCTTAATTTGGAGT
85437010 GTAACACCCC
Statistics
Matches: 156, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
177 66 0.42
178 2 0.01
179 76 0.49
180 12 0.08
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (177 bp):
GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTGTCAGACAGTGAAATAGGGGTA
ACTTTAATGAATAAACTGTACTAATTGAATAAAAAAATTCTAAAAATTTTATAGTAAGAATATAT
GTAAGTCTAGTTTCTGAGAAAATTAAGAGATCTTAATTTGGAGTCCC
Done.