Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 275 of 433
Found at i:85438530 original size:80 final size:80
Alignment explanation
Indices: 85438446--85438594 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
85438436 TATGGTAACC
* * * *
85438446 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
85438510 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
85438526 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
85438591 CCGG
66 CCGG
85438595 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:85438536 original size:40 final size:38
Alignment explanation
Indices: 85438487--85438594 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
85438477 ATCACGATTT
*
85438487 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
85438527 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
85438567 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
85438595 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:85443497 original size:80 final size:80
Alignment explanation
Indices: 85443413--85443561 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
85443403 TATGGTAACC
* * * *
85443413 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
85443477 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
85443493 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
85443558 CCGG
66 CCGG
85443562 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:85443503 original size:40 final size:38
Alignment explanation
Indices: 85443454--85443561 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
85443444 ATCACGATTT
*
85443454 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
85443494 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
85443534 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
85443562 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:85450003 original size:29 final size:30
Alignment explanation
Indices: 85449941--85449997 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
85449931 AATTAACAGA
* *
85449941 AAAAATAAATAAACCTAAATTTTTAAATTC
1 AAAAATAAAGAAACCTAAATTTTTAAAATC
*
85449971 AAAAATAAAGAAA-TTAAATTTTTAAAA
1 AAAAATAAAGAAACCTAAATTTTTAAAA
85449998 ATAAAATTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (30 bp):
AAAAATAAAGAAACCTAAATTTTTAAAATC
Found at i:85453753 original size:1 final size:1
Alignment explanation
Indices: 85453747--85453786 Score: 71
Period size: 1 Copynumber: 40.0 Consensus size: 1
85453737 ATCGACTGCA
*
85453747 TTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
85453787 GCTATGATGC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:85457848 original size:21 final size:22
Alignment explanation
Indices: 85457810--85457851 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
85457800 AAAATTTTAT
*
85457810 AAAATCATTAAATATTAAATTA
1 AAAATAATTAAATATTAAATTA
*
85457832 AAAATAATTATAT-TTAAATT
1 AAAATAATTAAATATTAAATT
85457852 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATAATTAAATATTAAATTA
Found at i:85458121 original size:20 final size:19
Alignment explanation
Indices: 85458098--85458138 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
85458088 TTTTTATCTA
85458098 TTAAACAAAATTTAAATAAT
1 TTAAACAAAA-TTAAATAAT
**
85458118 TTAAATGAAATTAAATAAT
1 TTAAACAAAATTAAATAAT
85458137 TT
1 TT
85458139 TTAATCAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (19 bp):
TTAAACAAAATTAAATAAT
Found at i:85458484 original size:21 final size:21
Alignment explanation
Indices: 85458436--85458484 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
85458426 TTACTTTCCT
85458436 ATAATTAAAATATTTAAATATC
1 ATAA-TAAAATATTTAAATATC
* *
85458458 ACAATAAAATATATTAAA-ATG
1 ATAATAAAATAT-TTAAATATC
85458479 ATAATA
1 ATAATA
85458485 TATTAACTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (21 bp):
ATAATAAAATATTTAAATATC
Found at i:85458986 original size:22 final size:20
Alignment explanation
Indices: 85458936--85458989 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 20
85458926 TGAATTTCAC
85458936 TTATATAT-T-TTTATTTTT
1 TTATATATGTATTTATTTTT
85458954 TTATATATGTATTTATTTATT
1 TTATATATGTATTTATTT-TT
85458975 TTCA-ATATTGTATTT
1 TT-ATATA-TGTATTT
85458990 TAGTAATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
18 8 0.26
19 1 0.03
20 7 0.23
21 7 0.23
22 8 0.26
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.69
Consensus pattern (20 bp):
TTATATATGTATTTATTTTT
Found at i:85458991 original size:23 final size:21
Alignment explanation
Indices: 85458944--85458991 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 21
85458934 ACTTATATAT
85458944 TTTTATTTTTTTATATATGTA
1 TTTTATTTTTTTATATATGTA
85458965 -TTTATTTATTTTCA-ATATTGTA
1 TTTTATTT-TTTT-ATATA-TGTA
85458987 TTTTA
1 TTTTA
85458992 GTAATTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 7 0.30
21 7 0.30
22 5 0.22
23 4 0.17
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (21 bp):
TTTTATTTTTTTATATATGTA
Found at i:85467608 original size:25 final size:25
Alignment explanation
Indices: 85467572--85467633 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
85467562 AGCCTACTAG
*
85467572 GCACAAAGCCTGATATAATACATCA
1 GCACAAAGCCTGATATAAGACATCA
* **
85467597 GCACAAATCCTGATATAAGACATTG
1 GCACAAAGCCTGATATAAGACATCA
85467622 GCACAAAGCCTG
1 GCACAAAGCCTG
85467634 CTAGGCATAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.19
Consensus pattern (25 bp):
GCACAAAGCCTGATATAAGACATCA
Found at i:85468256 original size:52 final size:52
Alignment explanation
Indices: 85468178--85468283 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
85468168 GAACTGTAGG
*
85468178 TTAAACCAATATGGGTCAAATAGATTCGAGTTAAACAGTTAAGTGATGTGTC
1 TTAAACCAATATGGGTCAAATAGATTCGAGTTAAACAGTTAAGCGATGTGTC
85468230 TTAAACCAATATGGGTCAAATAGATTCGAGTTAAACAGTTAAGCGATGTGTC
1 TTAAACCAATATGGGTCAAATAGATTCGAGTTAAACAGTTAAGCGATGTGTC
85468282 TT
1 TT
85468284 TAATTTAGCG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (52 bp):
TTAAACCAATATGGGTCAAATAGATTCGAGTTAAACAGTTAAGCGATGTGTC
Found at i:85476097 original size:13 final size:12
Alignment explanation
Indices: 85476073--85476106 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
85476063 AGCTTCAAAT
85476073 TTTTAGTTTGTTA
1 TTTTA-TTTGTTA
85476086 TTCTTATTTGTTA
1 TT-TTATTTGTTA
85476099 TTTTATTT
1 TTTTATTT
85476107 CTGGCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.30
13 11 0.55
14 3 0.15
ACGTcount: A:0.15, C:0.03, G:0.09, T:0.74
Consensus pattern (12 bp):
TTTTATTTGTTA
Found at i:85477605 original size:48 final size:48
Alignment explanation
Indices: 85477550--85477645 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
85477540 GCTAAATAGA
85477550 TAACTTATCATGGAAAAGGGGTTTCTTATTAAAGTGGAGGATAATGCG
1 TAACTTATCATGGAAAAGGGGTTTCTTATTAAAGTGGAGGATAATGCG
85477598 TAACTTATCATGGAAAAGGGGTTTCTTATTAAAGTGGAGGATAATGCG
1 TAACTTATCATGGAAAAGGGGTTTCTTATTAAAGTGGAGGATAATGCG
85477646 GCCGTCCGGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TAACTTATCATGGAAAAGGGGTTTCTTATTAAAGTGGAGGATAATGCG
Found at i:85479607 original size:46 final size:46
Alignment explanation
Indices: 85479554--85479873 Score: 410
Period size: 46 Copynumber: 7.0 Consensus size: 46
85479544 GCTCTCTGAA
* *
85479554 ATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
85479600 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
85479646 ATGAAAAGAATAAGACCATGGTTGAAATATACCATGGTAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** ** * *
85479692 GGGAAATGAAAAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
85479738 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACTTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
85479784 ATGAAAAG-GATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAG-TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
85479830 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
85479874 TCAAAGATAA
Statistics
Matches: 240, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
45 1 0.00
46 238 0.99
47 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:85479804 original size:138 final size:138
Alignment explanation
Indices: 85479565--85479873 Score: 456
Period size: 138 Copynumber: 2.2 Consensus size: 138
85479555 TGAAATGCGT
* * **
85479565 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAACGAATAAGACCATGGTTGAAAGAT
* * * *
85479630 ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAATATACCATGGTAACATGACGGG
66 ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
85479695 AAATGAAA
131 AAATGAAA
* *
85479703 AAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAACGAATAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAACGAATAAGACCATGGTTGAAAGAT
* *
85479768 ACCATGGCAACTTGACATGAAAAGGATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
66 ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
**
85479833 AAATGAGT
131 AAATGAAA
* * * *
85479841 AAGACCATAGTTGAAAGACACTATGGCATCATG
1 AAGACCATGGTTGAAAGATACCATGGCAACATG
85479874 TCAAAGATAA
Statistics
Matches: 152, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
138 152 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.19
Consensus pattern (138 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAACGAATAAGACCATGGTTGAAAGAT
ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
AAATGAAA
Found at i:85484770 original size:313 final size:313
Alignment explanation
Indices: 85484195--85484832 Score: 1213
Period size: 313 Copynumber: 2.0 Consensus size: 313
85484185 CATAAACAAT
* *
85484195 TAGCTCACATATCAGTGCTAACTTTACTCTTAAGCTTGGAGGTACATCGCAGCGCGTTGATGAAA
1 TAGCTCTCATATCAGTGCTAACTTTACTATTAAGCTTGGAGGTACATCGCAGCGCGTTGATGAAA
85484260 GTATTAAATGAAACTTATGTTGCTAATGATATCTCCGTCAACAATCTAGACCGTTTGGTCAGTAA
66 GTATTAAATGAAACTTATGTTGCTAATGATATCTCCGTCAACAATCTAGACCGTTTGGTCAGTAA
85484325 CATAAGCGCCAATAATTTTATCTTTTTTAATAATGATGAAATACTTCCGGGAAGCATTGGATCCA
131 CATAAGCGCCAATAATTTTATCTTTTTTAATAATGATGAAATACTTCCGGGAAGCATTGGATCCA
*
85484390 CAAAGCCTCTACACATTACCACCCACTGCAATGGGTATACATTGCCAGGGGTATTGATTGATAAT
196 CAAAGCCTCTACACATCACCACCCACTGCAATGGGTATACATTGCCAGGGGTATTGATTGATAAT
85484455 GGGTCTGCACTAAATGTCTTGCCCTTATCCACACTAAACAGATTACTAGTGGA
261 GGGTCTGCACTAAATGTCTTGCCCTTATCCACACTAAACAGATTACTAGTGGA
* *
85484508 TAGCTCTCATATCAGTGCTAACTTTACTATTAAGCTTGGAGGTATATCGTAGCGCGTTGATGAAA
1 TAGCTCTCATATCAGTGCTAACTTTACTATTAAGCTTGGAGGTACATCGCAGCGCGTTGATGAAA
85484573 GTATTAAATGAAACTTATGTTGCTAATGATATCTCCGTCAACAATCTAGACCGTTTGGTCAGTAA
66 GTATTAAATGAAACTTATGTTGCTAATGATATCTCCGTCAACAATCTAGACCGTTTGGTCAGTAA
*
85484638 CATAAGCGCCAATAATTTTATCTTTTTTAATAATGATGAAATACTTCCGGGAGGCATTGGATCCA
131 CATAAGCGCCAATAATTTTATCTTTTTTAATAATGATGAAATACTTCCGGGAAGCATTGGATCCA
*
85484703 CAAAGCCTCTACACATCACCACCCACTGCAATGGGTATACATTGCTAGGGGTATTGATTGATAAT
196 CAAAGCCTCTACACATCACCACCCACTGCAATGGGTATACATTGCCAGGGGTATTGATTGATAAT
85484768 GGGTCTGCACTAAATGTCTTGCCCTTATCCACACTAAACAGATTACTAGTGGA
261 GGGTCTGCACTAAATGTCTTGCCCTTATCCACACTAAACAGATTACTAGTGGA
85484821 TAGCTCTCATAT
1 TAGCTCTCATAT
85484833 GAAGACTTGT
Statistics
Matches: 318, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
313 318 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31
Consensus pattern (313 bp):
TAGCTCTCATATCAGTGCTAACTTTACTATTAAGCTTGGAGGTACATCGCAGCGCGTTGATGAAA
GTATTAAATGAAACTTATGTTGCTAATGATATCTCCGTCAACAATCTAGACCGTTTGGTCAGTAA
CATAAGCGCCAATAATTTTATCTTTTTTAATAATGATGAAATACTTCCGGGAAGCATTGGATCCA
CAAAGCCTCTACACATCACCACCCACTGCAATGGGTATACATTGCCAGGGGTATTGATTGATAAT
GGGTCTGCACTAAATGTCTTGCCCTTATCCACACTAAACAGATTACTAGTGGA
Found at i:85490314 original size:44 final size:44
Alignment explanation
Indices: 85490208--85490772 Score: 411
Period size: 44 Copynumber: 12.6 Consensus size: 44
85490198 CCATCATGGC
* *
85490208 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATA-T
* * * * *
85490253 AAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAT
* * * *
85490297 AAA-CTTTATCTCTCTGAAGTTGCAGTGGAGTAGGTTGAAGTTAC
1 AAATC-TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAT
* * * * * * *
85490341 AAGTCTTATCTCCCTGAAATGGCAATGGAGCAGACTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATA-T
* * * *
85490386 AAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAT
* * * *
85490430 AAACCTTATCTCCCTAAAGTTGCAGTGGAGTATG-TTGAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTA-GATTGAAGATAT
* * * *
85490474 AAGTCTTATCTCCTTGATA-TGGCAGTGGAGCAGATTGAAGATA-
1 AAATCTTATCTCCCTGA-AGTTGCAGTGGAGTAGATTGAAGATAT
* * ** * *
85490517 ACGAATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTACAGCTACAAATTAC
1 A--AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATT---G--A-AGA-TAT
* * * *
85490570 AAATCTTATCTCCATGAAGTTGCAGTAGAGCAGATTGAAGTTAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAT
* * * * *
85490614 AGATCTTATCTCCCTAAAGTTGTAGTGG-TTAGATCGAAGATAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATA-T
* * ** * *
85490658 AAATCTTGTCTCCCTGAAGTTGTAGCAGAGCAGATTGAAGCTAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAT
* * * * * * * *
85490702 CAGTCTTATATCCCTAAAGTTGCAGTGGAGTGGATCGAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAT
* *
85490746 AAGTCTTATCTCCCTGAAGTTGTAGTG
1 AAATCTTATCTCCCTGAAGTTGCAGTG
85490773 AAGTGGATCG
Statistics
Matches: 404, Mismatches: 97, Indels: 39
0.75 0.18 0.07
Matches are distributed among these distances:
43 13 0.03
44 240 0.59
45 112 0.28
46 1 0.00
48 2 0.00
50 1 0.00
51 32 0.08
52 2 0.00
53 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAT
Found at i:85490320 original size:89 final size:89
Alignment explanation
Indices: 85490206--85490727 Score: 314
Period size: 89 Copynumber: 5.8 Consensus size: 89
85490196 AGCCATCATG
* * *
85490206 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTATCTCTCTGAA
1 GCAAATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTGAAGATA-CAAATCTTATCTCCCTGAA
* *
85490271 GTTGCAGTAGAGCAGATTAAAGCTA
65 GTTGCAGTAGAGCAGACTAAAGATA
* * * *
85490296 -TAAA-CTTTATCTCTCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
1 GCAAATC-TTATCTCTCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAATCTTATCTCCCTGAA
* * * * *
85490359 ATGGCAATGGAGCAGACTGAAGATA
65 GTTGCAGTAGAGCAGACTAAAGATA
* * * * * *
85490384 GCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAACCTTATCTCCCTAAAG
1 GCAAATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAATCTTATCTCCCTGAAG
* * * * *
85490449 TTGCAGTGGAGTATG-TTGAAGTTA
66 TTGCAGTAGAGCA-GACTAAAGATA
* * * * * *
85490473 -CAAGTCTTATCTC-CTTGATA-TGGCAGTGGAGCAGATTGAAGATAACGAATCTTATTTTCCTG
1 GCAAATCTTATCTCTC-TGA-AGTTGCAGTGGAGTAGATTGAAGAT-ACAAATCTTATCTCCCTG
* *
85490535 AAGTTGCAGTGGAACAGATTACAGCTACAA-ATTA
63 AAGTTGCAGTAGAGCAG-----A-CTA-AAGA-TA
* * * * * *
85490569 -CAAATCTTATCTC-CATGAAGTTGCAGTAGAGCAGATTGAAGTTATAGATCTTATCTCCCTAAA
1 GCAAATCTTATCTCTC-TGAAGTTGCAGTGGAGTAGATTGAAGATACAAATCTTATCTCCCTGAA
* * *
85490632 GTTGTAGT-G-GTTAGA-TCGAAGATA
65 GTTGCAGTAGAG-CAGACT-AAAGATA
* * * * ** * * * * *
85490656 GTAAATCTTGTCTCCCTGAAGTTGTAGCAGAGCAGATTGAAGCTATC-AGTCTTATATCCCTAAA
1 GCAAATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTGAAGATA-CAAATCTTATCTCCCTGAA
85490720 GTTGCAGT
65 GTTGCAGT
85490728 GGAGTGGATC
Statistics
Matches: 338, Mismatches: 71, Indels: 48
0.74 0.16 0.11
Matches are distributed among these distances:
87 6 0.02
88 129 0.38
89 135 0.40
90 2 0.01
94 3 0.01
95 23 0.07
96 40 0.12
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (89 bp):
GCAAATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAATCTTATCTCCCTGAAG
TTGCAGTAGAGCAGACTAAAGATA
Found at i:85490450 original size:133 final size:133
Alignment explanation
Indices: 85490211--85490763 Score: 596
Period size: 133 Copynumber: 4.1 Consensus size: 133
85490201 TCATGGCAAA
* * *
85490211 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTATCTCTCTGAAGTTGC
1 TCTTATCTCCCTGAAATGGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCTCTGAAGTTGC
* * *
85490276 AGTAGAGCAGATTAAAGCTATAAACTTTATCTCTCTGAAGTTGCAGTGGAGTAGGTTGAAGTTAC
66 AGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAGTTAC
85490341 AAG
131 AAG
*
85490344 TCTTATCTCCCTGAAATGGCAATGGAGCAGACTGAAGATAGCAAATCTTATCTCTCTGAAGTTGC
1 TCTTATCTCCCTGAAATGGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCTCTGAAGTTGC
* *
85490409 AGTAGAGTAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGGAGTATGTTGAAGTTAC
66 AGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAGTTAC
85490474 AAG
131 AAG
* * * * * *
85490477 TCTTATCTCCTTGATATGGCAGTGGAGCAGATTGAAGATAACGAATCTTAT-TTTCCTGAAGTTG
1 TCTTATCTCCCTGAAATGGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCT-CTGAAGTTG
* * * * * * * * *
85490541 CAGTGGAACAGATTACAGCTACAAATTACAAATCTTATCTCCATGAAGTTGCAGTAGAGCAGATT
65 CAGTAGAGCAGATTAAAGCT----A-T--AAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTT
*
85490606 GAAGTTA-TAG
123 GAAGTTACAAG
* * ** * * *
85490616 ATCTTATCTCCCT-AAAGTTGTAGTGG-TTAGA-TCGAAGATAGTAAATCTTGTCTCCCTGAAGT
1 -TCTTATCTCCCTGAAA-TGGCAGTGGAGCAGACT-GAAGATAGCAAATCTTATCTCTCTGAAGT
* * * * ** * *
85490678 TGTAGCAGAGCAGATTGAAGCTATCAGTCTTATATCCCTAAAGTTGCAGTGGAGT-GGATCGAAG
63 TGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGG-TTGAAG
85490742 TTACAAG
127 TTACAAG
85490749 TCTTATCTCCCTGAA
1 TCTTATCTCCCTGAA
85490764 GTTGTAGTGA
Statistics
Matches: 349, Mismatches: 56, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
131 1 0.00
132 46 0.13
133 198 0.57
134 1 0.00
135 1 0.00
137 1 0.00
138 2 0.01
139 44 0.13
140 55 0.16
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (133 bp):
TCTTATCTCCCTGAAATGGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCTCTGAAGTTGC
AGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAGTTAC
AAG
Found at i:85490694 original size:184 final size:183
Alignment explanation
Indices: 85490385--85490730 Score: 412
Period size: 184 Copynumber: 1.9 Consensus size: 183
85490375 CTGAAGATAG
*
85490385 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAACCTTATCTCCCTAAAGT
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGT
* * * * **
85490450 TGCAGTGGAGTATGTTGAAGTTACAAGTCTTATCTCCTTGATATGGCAGTGGAGCAGATTGAAGA
66 TGCAGTGGAGTATGTCGAAGATACAAATCTTATCTCCCTGATATGGCAGCAGAGCAGATTGAAGA
* * *
85490515 TAACGAATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTACAGCTACAAATTA
131 TAAC-AATCTTATATCCCTAAAGTTGCAGTGGAACAGATTACAGCTACAAATTA
* * * *
85490569 CAAATCTTATCTC-CATGAAGTTGCAGTAGAGCAGATTGAAGTTATAGATCTTATCTCCCTAAAG
1 CAAATCTTATCTCTC-TGAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAG
* * * * * *
85490633 TTGTAGTGG-TTA-GATCGAAGATAGTAAATCTTGTCTCCCTGA-AGTTGTAGCAGAGCAGATTG
65 TTGCAGTGGAGTATG-TCGAAGATA-CAAATCTTATCTCCCTGATA-TGGCAGCAGAGCAGATTG
* * *
85490695 AAGCTATCAGTCTTATATCCCTAAAGTTGCAGTGGA
127 AAGATAACAATCTTATATCCCTAAAGTTGCAGTGGA
85490731 GTGGATCGAA
Statistics
Matches: 135, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
182 1 0.01
183 35 0.26
184 99 0.73
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (183 bp):
CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGT
TGCAGTGGAGTATGTCGAAGATACAAATCTTATCTCCCTGATATGGCAGCAGAGCAGATTGAAGA
TAACAATCTTATATCCCTAAAGTTGCAGTGGAACAGATTACAGCTACAAATTA
Found at i:85492306 original size:3 final size:3
Alignment explanation
Indices: 85492298--85492357 Score: 66
Period size: 3 Copynumber: 19.7 Consensus size: 3
85492288 AAAACTTTAG
* * * *
85492298 TTA TTA TTA TTA TTTA TTA TTA TTA ATA TCA TCA TCA TTA TTA TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
85492344 ATA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
85492358 CTTAAATTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
3 47 0.94
4 3 0.06
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:85492441 original size:13 final size:12
Alignment explanation
Indices: 85492417--85492451 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
85492407 TAGCTTCAAA
85492417 ATTTTAATTTGTT
1 ATTTT-ATTTGTT
85492430 ATTCTTATTTGTT
1 ATT-TTATTTGTT
85492443 ATTTTATTT
1 ATTTTATTT
85492452 CTAGCTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.29
13 13 0.62
14 2 0.10
ACGTcount: A:0.20, C:0.03, G:0.06, T:0.71
Consensus pattern (12 bp):
ATTTTATTTGTT
Found at i:85494047 original size:23 final size:23
Alignment explanation
Indices: 85494014--85494060 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
85494004 TTTATTAAAA
85494014 AAAAGTATGTTACATAAATTTTT
1 AAAAGTATGTTACATAAATTTTT
* * *
85494037 AAAAGTGTGTTAGATATATTTTT
1 AAAAGTATGTTACATAAATTTTT
85494060 A
1 A
85494061 GTCTTGTCGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (23 bp):
AAAAGTATGTTACATAAATTTTT
Found at i:85497197 original size:3 final size:3
Alignment explanation
Indices: 85497189--85497235 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
85497179 CTTTCGGTTT
85497189 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
85497236 TTAACATATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:85501592 original size:21 final size:21
Alignment explanation
Indices: 85501568--85501620 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
85501558 CATTGTTTCT
*
85501568 AATCTCACCGCTACAATATCC
1 AATCTCACCGCTACAATAACC
* *
85501589 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
85501610 AATCTCACCGC
1 AATCTCACCGC
85501621 CACCACTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:85506359 original size:33 final size:33
Alignment explanation
Indices: 85506295--85506359 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
85506285 TTTAAATTTT
*
85506295 AAAAATTATTAAAAAATCATAAAAATTTTAAAC
1 AAAAATTATTAAAAAATCATAAAAATATTAAAC
* *
85506328 AAAATTTA-TAAAGAAATTATAAAAATATTAAA
1 AAAAATTATTAAA-AAATCATAAAAATATTAAA
85506360 ATTATACATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 4 0.14
33 24 0.86
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.31
Consensus pattern (33 bp):
AAAAATTATTAAAAAATCATAAAAATATTAAAC
Found at i:85509701 original size:21 final size:20
Alignment explanation
Indices: 85509658--85509710 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
85509648 AGAGTTTTCA
*
85509658 TTTA-TTTGTTTTATTTAGC
1 TTTATTTTGTTTTACTTAGC
**
85509677 TTTAATTTTGTTTTACTTATT
1 TTT-ATTTTGTTTTACTTAGC
*
85509698 TTTATTTCGTTTT
1 TTTATTTTGTTTT
85509711 TATTTAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 3 0.11
20 10 0.36
21 15 0.54
ACGTcount: A:0.15, C:0.06, G:0.08, T:0.72
Consensus pattern (20 bp):
TTTATTTTGTTTTACTTAGC
Found at i:85509709 original size:20 final size:20
Alignment explanation
Indices: 85509658--85509710 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
85509648 AGAGTTTTCA
*
85509658 TTTATTTGTTTTATTTAGCT
1 TTTATTTGTTTTACTTAGCT
* *
85509678 TTAATTTTGTTTTACTTA-TT
1 TTTA-TTTGTTTTACTTAGCT
85509698 TTTATTTCGTTTT
1 TTTATTT-GTTTT
85509711 TATTTAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 3 0.11
20 12 0.44
21 12 0.44
ACGTcount: A:0.15, C:0.06, G:0.08, T:0.72
Consensus pattern (20 bp):
TTTATTTGTTTTACTTAGCT
Found at i:85514549 original size:43 final size:43
Alignment explanation
Indices: 85514501--85514586 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
85514491 ATCACATGTA
* * * *
85514501 TCGCATCCATTATGAACTTAGACCATTCAATGAGTTCGGATGC
1 TCGCATCCATAATGAACTCAGACCATTCAACGAGCTCGGATGC
*
85514544 TCGCATCCATAATGAACTCGGACCATTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCATTCAACGAGCTCGGATGC
85514587 CACATATATC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCAGACCATTCAACGAGCTCGGATGC
Found at i:85516721 original size:4 final size:4
Alignment explanation
Indices: 85516712--85516742 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
85516702 TTTGAACTTC
85516712 AATT AATT AATT AATT AATT AATT AA-T AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT
85516743 CTAAAAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:85521719 original size:23 final size:21
Alignment explanation
Indices: 85521680--85521721 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
85521670 TTACAAAATA
85521680 TTTCTCTTTTCTTTGTTTTCC
1 TTTCTCTTTTCTTTGTTTTCC
85521701 TTTCTCTTTTGTCTTTGTTTT
1 TTTCTC-TTT-TCTTTGTTTT
85521722 GTAGGTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 3 0.16
23 10 0.53
ACGTcount: A:0.00, C:0.19, G:0.07, T:0.74
Consensus pattern (21 bp):
TTTCTCTTTTCTTTGTTTTCC
Found at i:85522445 original size:50 final size:50
Alignment explanation
Indices: 85522360--85522554 Score: 169
Period size: 50 Copynumber: 3.9 Consensus size: 50
85522350 TTATCCATTT
* * * * * *
85522360 CACTACAACTTC-AGGGGTATATGATTTGATTTTGTAGCTTCATCTCGCTC
1 CACTACATCTTCAAGGAG-ATAAGATTTGCTATTGTAGCTTCATCTCGTTC
* * * *
85522410 CACTACATCTTTAGGGAGATAAAATTTGCTATTGTAGCTTCA-CTTCATTC
1 CACTACATCTTCAAGGAGATAAGATTTGCTATTGTAGCTTCATC-TCGTTC
* * * * * * *
85522460 CACTACAACTTCAAGGATATAGGAGTCGCTGTTGTAGCTTCATCTTGTTC
1 CACTACATCTTCAAGGAGATAAGATTTGCTATTGTAGCTTCATCTCGTTC
* * * *
85522510 CACTACATCTTCAAGGAGATGAGATTTGCTACTGCAGCTTTATCT
1 CACTACATCTTCAAGGAGATAAGATTTGCTATTGTAGCTTCATCT
85522555 TACTGCATTG
Statistics
Matches: 111, Mismatches: 31, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
49 1 0.01
50 106 0.95
51 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (50 bp):
CACTACATCTTCAAGGAGATAAGATTTGCTATTGTAGCTTCATCTCGTTC
Found at i:85522499 original size:100 final size:100
Alignment explanation
Indices: 85522355--85522549 Score: 246
Period size: 100 Copynumber: 1.9 Consensus size: 100
85522345 TTGTTTTATC
* * * * * * *
85522355 CATTTCACTACAACTTCAGGGGTATATGATTTGATTTTGTAGCTTCATCTCGCTCCACTACATCT
1 CATTCCACTACAACTTCAAGGATATAGGAGTCGATGTTGTAGCTTCATCTCGCTCCACTACATCT
* * * *
85522420 TTAGGGAGATAAAATTTGCTATTGTAGCTTCACTT
66 TCAAGGAGATAAAATTTGCTACTGCAGCTTCACTT
* * *
85522455 CATTCCACTACAACTTCAAGGATATAGGAGTCGCTGTTGTAGCTTCATCTTGTTCCACTACATCT
1 CATTCCACTACAACTTCAAGGATATAGGAGTCGATGTTGTAGCTTCATCTCGCTCCACTACATCT
* *
85522520 TCAAGGAGATGAGATTTGCTACTGCAGCTT
66 TCAAGGAGATAAAATTTGCTACTGCAGCTT
85522550 TATCTTACTG
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (100 bp):
CATTCCACTACAACTTCAAGGATATAGGAGTCGATGTTGTAGCTTCATCTCGCTCCACTACATCT
TCAAGGAGATAAAATTTGCTACTGCAGCTTCACTT
Found at i:85522555 original size:50 final size:50
Alignment explanation
Indices: 85522392--85522601 Score: 172
Period size: 50 Copynumber: 4.2 Consensus size: 50
85522382 GATTTGATTT
*** * * * * *
85522392 TGTAGCTTCATCTCGCTCCACTACATCTTTAGGGAGATAAAATTTGCTAT
1 TGTAGCTTCATCTTATTCCACTACATCTTCAAGGAGATGAGATTTGCTAC
* * * * **
85522442 TGTAGCTTCA-CTTCATTCCACTACAACTTCAAGGATAT-AGGAGTCGCTGT
1 TGTAGCTTCATCTT-ATTCCACTACATCTTCAAGGAGATGA-GATTTGCTAC
*
85522492 TGTAGCTTCATCTTGTTCCACTACATCTTCAAGGAGATGAGATTTGCTAC
1 TGTAGCTTCATCTTATTCCACTACATCTTCAAGGAGATGAGATTTGCTAC
* * * * * * * *
85522542 TGCAGCTTTATCTTACTGCATTGCATCTTCAGGGAGATGAGGTTTGCTAC
1 TGTAGCTTCATCTTATTCCACTACATCTTCAAGGAGATGAGATTTGCTAC
*
85522592 TGTAACTTCA
1 TGTAGCTTCA
85522602 CTCCATCTCA
Statistics
Matches: 126, Mismatches: 30, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
49 3 0.02
50 119 0.94
51 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (50 bp):
TGTAGCTTCATCTTATTCCACTACATCTTCAAGGAGATGAGATTTGCTAC
Found at i:85523786 original size:22 final size:22
Alignment explanation
Indices: 85523761--85523836 Score: 53
Period size: 22 Copynumber: 3.2 Consensus size: 22
85523751 ATTATATAAT
85523761 AATTTTAGTCAAGAACCATTAA
1 AATTTTAGTCAAGAACCATTAA
* * * **
85523783 AATTATGTTGTTTAAAATATTATATAA
1 AATT-T-TAG-TCAAGA-ACCAT-TAA
85523810 TAATTTTAGTCAAGAACCATTAA
1 -AATTTTAGTCAAGAACCATTAA
85523833 AATT
1 AATT
85523837 ATGGCCAAAT
Statistics
Matches: 38, Mismatches: 10, Indels: 12
0.63 0.17 0.20
Matches are distributed among these distances:
22 8 0.21
23 4 0.11
24 5 0.13
25 8 0.21
26 5 0.13
27 4 0.11
28 4 0.11
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (22 bp):
AATTTTAGTCAAGAACCATTAA
Found at i:85523814 original size:50 final size:50
Alignment explanation
Indices: 85523739--85523839 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
85523729 CAAGTTATTG
85523739 GTTGTTTAAAATATTATATAATAATTTTAGTCAAGAACCATTAAAATTAT
1 GTTGTTTAAAATATTATATAATAATTTTAGTCAAGAACCATTAAAATTAT
85523789 GTTGTTTAAAATATTATATAATAATTTTAGTCAAGAACCATTAAAATTAT
1 GTTGTTTAAAATATTATATAATAATTTTAGTCAAGAACCATTAAAATTAT
85523839 G
1 G
85523840 GCCAAATAGC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.42
Consensus pattern (50 bp):
GTTGTTTAAAATATTATATAATAATTTTAGTCAAGAACCATTAAAATTAT
Found at i:85528525 original size:68 final size:67
Alignment explanation
Indices: 85528417--85528548 Score: 237
Period size: 68 Copynumber: 2.0 Consensus size: 67
85528407 TAGCACATGT
*
85528417 AAAATTTATCATAAAACTGATAATCAGATAGTTAAACATTTCCTTACTAATAAAAGTTTGGAAAT
1 AAAATTTATCATAAAACTGATAATCAGACAGTTAAACATTTCCTTACTAATAAAAGTTTGGAAAT
85528482 GG
66 GG
*
85528484 AAAATTTATCATAAAAACTGATAATCATACAGTTAAACATTTCCTTACTAATAAAAGTTTGGAAA
1 AAAATTTATCAT-AAAACTGATAATCAGACAGTTAAACATTTCCTTACTAATAAAAGTTTGGAAA
85528549 CTGTACCTAG
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
67 12 0.19
68 50 0.81
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.33
Consensus pattern (67 bp):
AAAATTTATCATAAAACTGATAATCAGACAGTTAAACATTTCCTTACTAATAAAAGTTTGGAAAT
GG
Found at i:85531976 original size:16 final size:15
Alignment explanation
Indices: 85531956--85532023 Score: 82
Period size: 16 Copynumber: 4.3 Consensus size: 15
85531946 GGGAGGAATG
*
85531956 GAATAGAGCTATAAT
1 GAATAGAGCTGTAAT
*
85531971 GTAATAGAGTTGTAAT
1 G-AATAGAGCTGTAAT
85531987 GGAATAGAGCTGTAAT
1 -GAATAGAGCTGTAAT
*
85532003 AGAATAGACCTGTAAT
1 -GAATAGAGCTGTAAT
85532019 GAATA
1 GAATA
85532024 ATTTAGTTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
15 6 0.13
16 39 0.85
17 1 0.02
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.28
Consensus pattern (15 bp):
GAATAGAGCTGTAAT
Found at i:85531993 original size:32 final size:32
Alignment explanation
Indices: 85531952--85532023 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
85531942 GGTTGGGAGG
**
85531952 AATGGAATAGAGCTATAAT-GTAATAGAGTTGT
1 AATGGAATAGAGCTATAATAG-AATAGACCTGT
*
85531984 AATGGAATAGAGCTGTAATAGAATAGACCTGT
1 AATGGAATAGAGCTATAATAGAATAGACCTGT
85532016 AAT-GAATA
1 AATGGAATA
85532024 ATTTAGTTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 5 0.14
32 30 0.83
33 1 0.03
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.28
Consensus pattern (32 bp):
AATGGAATAGAGCTATAATAGAATAGACCTGT
Found at i:85532239 original size:26 final size:26
Alignment explanation
Indices: 85532184--85532239 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
85532174 TTTTAAATTT
* * * *
85532184 TAATAAAATTATTATTAAATATAATT
1 TAATAAAAATAATAATAAATATAATA
85532210 TAATAAAAATAATAATAAATAATAA-A
1 TAATAAAAATAATAATAAAT-ATAATA
85532236 TAAT
1 TAAT
85532240 TTAATCATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
TAATAAAAATAATAATAAATATAATA
Found at i:85536544 original size:16 final size:17
Alignment explanation
Indices: 85536523--85536555 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
85536513 GACATTACGG
*
85536523 TAATTAT-TTTGTCAAA
1 TAATTATCTTTGACAAA
85536539 TAATTATCTTTGACAAA
1 TAATTATCTTTGACAAA
85536556 AACTACCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.45
Consensus pattern (17 bp):
TAATTATCTTTGACAAA
Found at i:85536619 original size:16 final size:16
Alignment explanation
Indices: 85536595--85536625 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85536585 CATCGTCTCT
85536595 TTATCTATTATTATTA
1 TTATCTATTATTATTA
*
85536611 TTATTTATTATTATT
1 TTATCTATTATTATT
85536626 GACACATCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATCTATTATTATTA
Found at i:85539473 original size:34 final size:34
Alignment explanation
Indices: 85539428--85539496 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
85539418 ATTCTCCGCC
*
85539428 TAAGACTCATCAACTGCCTTTCCATTGGCTTGGG
1 TAAGACCCATCAACTGCCTTTCCATTGGCTTGGG
85539462 TAAGACCCATCAACTGCCTTTCCATTGGCTTGGG
1 TAAGACCCATCAACTGCCTTTCCATTGGCTTGGG
85539496 T
1 T
85539497 GTCTTATTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.32
Consensus pattern (34 bp):
TAAGACCCATCAACTGCCTTTCCATTGGCTTGGG
Found at i:85545896 original size:47 final size:46
Alignment explanation
Indices: 85545801--85545905 Score: 129
Period size: 47 Copynumber: 2.3 Consensus size: 46
85545791 TTCAAATAAG
* * * ** *
85545801 AAAATACAAAACTATGTCATTTTGATAAATATTTACATTTTAAGTT
1 AAAAGACAAAATTATGTCATTTTAATAAATATTTACACATTAAATT
* *
85545847 AAAAAGATAAAATTATGTCATTTTAATAAATATTTACCCATTAAATT
1 -AAAAGACAAAATTATGTCATTTTAATAAATATTTACACATTAAATT
85545894 AAAAGACAAAAT
1 AAAAGACAAAAT
85545906 ATTATATTGT
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 11 0.22
47 38 0.78
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.36
Consensus pattern (46 bp):
AAAAGACAAAATTATGTCATTTTAATAAATATTTACACATTAAATT
Found at i:85546209 original size:33 final size:33
Alignment explanation
Indices: 85546172--85546243 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
85546162 AAAATTATAA
* *
85546172 TTTATATATTATTCTATTAAATTATTTAAATAT
1 TTTATATATCATTATATTAAATTATTTAAATAT
* *
85546205 TTTATGTATCGTTATATTAAATTATTTAAATAT
1 TTTATATATCATTATATTAAATTATTTAAATAT
*
85546238 GTTATA
1 TTTATA
85546244 AAATATATAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.56
Consensus pattern (33 bp):
TTTATATATCATTATATTAAATTATTTAAATAT
Found at i:85547126 original size:9 final size:9
Alignment explanation
Indices: 85547107--85547143 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
85547097 TGAGTTTTCG
*
85547107 AATTTGAAT
1 AATTCGAAT
*
85547116 AACTCGAAT
1 AATTCGAAT
85547125 AATTCGAAT
1 AATTCGAAT
85547134 AATTCGAAT
1 AATTCGAAT
85547143 A
1 A
85547144 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:85547371 original size:18 final size:20
Alignment explanation
Indices: 85547338--85547376 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
85547328 CTCCCCAAAA
*
85547338 CCCTCAAAACTTTTTATTTT
1 CCCTCAAAACTTTTTACTTT
85547358 CCCTC-AAA-TTTTTACTTT
1 CCCTCAAAACTTTTTACTTT
85547376 C
1 C
85547377 TCCCACTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 3 0.17
20 5 0.28
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (20 bp):
CCCTCAAAACTTTTTACTTT
Found at i:85550399 original size:40 final size:40
Alignment explanation
Indices: 85550334--85550580 Score: 365
Period size: 40 Copynumber: 6.2 Consensus size: 40
85550324 TCTTCGGAAT
* ** *
85550334 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
85550373 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
85550413 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
85550452 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
85550492 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
85550532 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
85550572 TTAGCCCGG
1 TTAGCCCGG
85550581 GTATCATTCA
Statistics
Matches: 190, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 40 0.21
40 149 0.78
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:85550533 original size:80 final size:79
Alignment explanation
Indices: 85550334--85550577 Score: 364
Period size: 79 Copynumber: 3.1 Consensus size: 79
85550324 TCTTCGGAAT
* ** * * * *
85550334 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
1 TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
85550399 AATGCCTTCGGGTC
66 AATGCCTTCGGGTC
*
85550413 TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACG
1 TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
85550478 AATGCCTTCGGGTC
66 AATGCCTTCGGGTC
*
85550492 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCA
1 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCA
* *
85550556 TAAATGCCTTCGGGAC
64 CAAATGCCTTCGGGTC
85550572 TTAGCC
1 TTAGCC
85550578 CGGGTATCAT
Statistics
Matches: 151, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
79 77 0.51
80 73 0.48
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
AATGCCTTCGGGTC
Found at i:85552303 original size:37 final size:38
Alignment explanation
Indices: 85552262--85552345 Score: 154
Period size: 36 Copynumber: 2.3 Consensus size: 38
85552252 TAAATCAAAA
85552262 CATCAAAATGTCACACACGAATTAACAAATATTATA-G
1 CATCAAAATGTCACACACGAATTAACAAATATTATAGG
85552299 CATC-AAATGTCACACACGAATTAACAAATATTATAGG
1 CATCAAAATGTCACACACGAATTAACAAATATTATAGG
85552336 CATCAAAATG
1 CATCAAAATG
85552346 AATATTAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 31 0.69
37 9 0.20
38 5 0.11
ACGTcount: A:0.48, C:0.19, G:0.10, T:0.24
Consensus pattern (38 bp):
CATCAAAATGTCACACACGAATTAACAAATATTATAGG
Found at i:85555111 original size:40 final size:40
Alignment explanation
Indices: 85554999--85555151 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
85554989 GGATATAGCG
* * * ***
85554999 ACTCGCTCAAAAGCCTTCGGGA-TATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACT-TAGCCCGGATATGGGA
* * *
85555039 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
85555079 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
85555119 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
85555152 CATCATTCGA
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.84
41 12 0.13
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:85563088 original size:40 final size:40
Alignment explanation
Indices: 85562979--85563128 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
85562969 GGATATAGCG
* * * *
85562979 ACTCGCTCAAA-GCCTTCGGGACATAGCCCGGTTAT--AA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* *
85563016 AGCTCGCAC-AATGCCTTCGGGACTTAACCCGGATTTGGGA
1 A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
85563056 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
85563096 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
85563129 CATCATTCGA
Statistics
Matches: 92, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
37 3 0.03
38 26 0.28
39 10 0.11
40 42 0.46
41 11 0.12
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:85565865 original size:39 final size:40
Alignment explanation
Indices: 85565727--85565871 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
85565717 GCGACTCGCT
* * * *** * *
85565727 CAAAAGCCTTCGGGACATAGCCCGGTTATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
* * *
85565767 CAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
* **
85565807 CAAATGCCTTC-GGATCTTAGTCCGGATAT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATGGGAAC-TAGCA
85565847 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85565872 CATCATTCGA
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 22 0.26
40 64 0.74
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
Found at i:85573779 original size:40 final size:40
Alignment explanation
Indices: 85573667--85573819 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
85573657 GGATATAGCG
* * * * ***
85573667 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
85573707 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
85573747 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
85573787 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
85573820 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:85578197 original size:14 final size:15
Alignment explanation
Indices: 85578178--85578207 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
85578168 TAACATAAGT
85578178 TACAATC-ATTTGAA
1 TACAATCAATTTGAA
85578192 TACAATCAATTTGAA
1 TACAATCAATTTGAA
85578207 T
1 T
85578208 TCTAATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (15 bp):
TACAATCAATTTGAA
Found at i:85581434 original size:29 final size:29
Alignment explanation
Indices: 85581359--85581595 Score: 223
Period size: 29 Copynumber: 8.2 Consensus size: 29
85581349 TCAGATTCTC
* *
85581359 GCCACAAAGGCATCC-TTTAACAGA-ATTT
1 GCCACAAAGGCATCCTTTTAATAGAGA-TA
*
85581387 G-CA-AGAAGGCATTCC-TTTAATAGAGATG
1 GCCACA-AAGGCA-TCCTTTTAATAGAGATA
*
85581415 GCCATAAAGGCATCCTTTTAATAGAGATA
1 GCCACAAAGGCATCCTTTTAATAGAGATA
* *
85581444 GTCACAAAGGTATCCTTTTAATAGAGATA
1 GCCACAAAGGCATCCTTTTAATAGAGATA
* * * * *
85581473 GCCATAAAGGTATCCTTCTAACAGGGATA
1 GCCACAAAGGCATCCTTTTAATAGAGATA
** * *
85581502 GCCACAAAAACATCCTTTTAACAGAGATC
1 GCCACAAAGGCATCCTTTTAATAGAGATA
* *
85581531 GCCACAAAGGCATCCTTTTAACAAAGATA
1 GCCACAAAGGCATCCTTTTAATAGAGATA
** * *
85581560 GCCACAAAAACATCCTGTTAATAGAGATC
1 GCCACAAAGGCATCCTTTTAATAGAGATA
85581589 GCCACAA
1 GCCACAA
85581596 TGCTTCCTTT
Statistics
Matches: 175, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.01
27 8 0.05
28 17 0.10
29 148 0.85
30 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (29 bp):
GCCACAAAGGCATCCTTTTAATAGAGATA
Found at i:85581477 original size:58 final size:58
Alignment explanation
Indices: 85581402--85581592 Score: 256
Period size: 58 Copynumber: 3.3 Consensus size: 58
85581392 AAGGCATTCC
* * * ***
85581402 TTTAATAGAGATGGCCATAAAGGCATCCTTTTAATAGAGATAGTCACAAAGGTATCCT
1 TTTAATAGAGATCGCCATAAAGGCATCCTTTTAACAGAGATAGCCACAAAAACATCCT
* * * *
85581460 TTTAATAGAGATAGCCATAAAGGTATCCTTCTAACAGGGATAGCCACAAAAACATCCT
1 TTTAATAGAGATCGCCATAAAGGCATCCTTTTAACAGAGATAGCCACAAAAACATCCT
* * *
85581518 TTTAACAGAGATCGCCACAAAGGCATCCTTTTAACAAAGATAGCCACAAAAACATCCT
1 TTTAATAGAGATCGCCATAAAGGCATCCTTTTAACAGAGATAGCCACAAAAACATCCT
*
85581576 GTTAATAGAGATCGCCA
1 TTTAATAGAGATCGCCA
85581593 CAATGCTTCC
Statistics
Matches: 115, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 115 1.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (58 bp):
TTTAATAGAGATCGCCATAAAGGCATCCTTTTAACAGAGATAGCCACAAAAACATCCT
Found at i:85581593 original size:58 final size:58
Alignment explanation
Indices: 85581357--85581595 Score: 254
Period size: 58 Copynumber: 4.2 Consensus size: 58
85581347 CTTCAGATTC
* **
85581357 TCGCCACAAAGGCATCC-TTTAACAGA-ATTTG-CA-AGAAGGCATTCC-TTTAATAGAGA
1 TCGCCACAAAGGCATCCTTTTAACAGAGA-TAGCCACA-AAAACA-TCCTTTTAATAGAGA
* * * * ***
85581413 TGGCCATAAAGGCATCCTTTTAATAGAGATAGTCACAAAGGTATCCTTTTAATAGAGA
1 TCGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAAACATCCTTTTAATAGAGA
* * * * * *
85581471 TAGCCATAAAGGTATCCTTCTAACAGGGATAGCCACAAAAACATCCTTTTAACAGAGA
1 TCGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAAACATCCTTTTAATAGAGA
* *
85581529 TCGCCACAAAGGCATCCTTTTAACAAAGATAGCCACAAAAACATCCTGTTAATAGAGA
1 TCGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAAACATCCTTTTAATAGAGA
85581587 TCGCCACAA
1 TCGCCACAA
85581596 TGCTTCCTTT
Statistics
Matches: 155, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
56 15 0.10
57 13 0.08
58 126 0.81
59 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (58 bp):
TCGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAAACATCCTTTTAATAGAGA
Found at i:85582199 original size:31 final size:31
Alignment explanation
Indices: 85582164--85582227 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
85582154 AACCTAAAAT
85582164 ACATGGAAACCCTAGGAGAGAGAGAGAATAA
1 ACATGGAAACCCTAGGAGAGAGAGAGAATAA
85582195 ACATGGAAACCCTAGGAGAGAGAGAGAATAA
1 ACATGGAAACCCTAGGAGAGAGAGAGAATAA
85582226 AC
1 AC
85582228 TTTCATGGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.48, C:0.14, G:0.28, T:0.09
Consensus pattern (31 bp):
ACATGGAAACCCTAGGAGAGAGAGAGAATAA
Found at i:85583183 original size:57 final size:57
Alignment explanation
Indices: 85583047--85583196 Score: 164
Period size: 57 Copynumber: 2.6 Consensus size: 57
85583037 TATTGACCTT
*
85583047 GTTATAGAAAGGATTTAGCCTGGA-TGGGTAATCCTAATATAATACCTTTCGAGTATAC
1 GTTATA-AAAGGATTTAGCCTGGACT-GGTAATCCTAATATAATACCTTTCGAGCATAC
* * * * *
85583105 GTTACAATTAGGATTTTGCCTGGACTGGTAATCCTAAT-T--GAGCTCTTCTGAGCATAC
1 GTTATAA-AAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCT-TTC-GAGCATAC
85583162 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
1 GTTATA-AAAGGATTTAGCCTGGACTGGTAATCCT
85583197 GTTATACGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
55 3 0.04
56 3 0.04
57 39 0.50
58 32 0.41
59 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (57 bp):
GTTATAAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTTTCGAGCATAC
Found at i:85585603 original size:15 final size:15
Alignment explanation
Indices: 85585577--85585615 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
85585567 TGGCGTGGCC
85585577 TCATTCTTCATAACCA
1 TCATT-TTCATAACCA
85585593 TCATTTTCATAACCA
1 TCATTTTCATAACCA
85585608 TCACTTTT
1 TCA-TTTT
85585616 GTTTCACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (15 bp):
TCATTTTCATAACCA
Found at i:85593287 original size:38 final size:38
Alignment explanation
Indices: 85593236--85593526 Score: 168
Period size: 38 Copynumber: 6.9 Consensus size: 38
85593226 ATGAAAACAT
*
85593236 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
*
85593274 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAAC
* *
85593322 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------TAAC
* * * * *
85593369 ATAGTGCTAAGTGGATATACCATGATTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* *
85593407 GTGGTGCTAAGTGGATATTCCACGGTTACATATACTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGG-T---TATAC--A-T--GTAAC
* * * *
85593454 GTGGTGCTAAGTGGATATGCCACGGATAAACATGGAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* * *
85593492 ATGGTGCTAAGTGGATATGCCATGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGT
85593527 TAATTTGAAA
Statistics
Matches: 196, Mismatches: 30, Indels: 54
0.70 0.11 0.19
Matches are distributed among these distances:
38 81 0.41
39 3 0.02
40 5 0.03
41 3 0.02
42 4 0.02
43 4 0.02
44 3 0.02
45 4 0.02
47 56 0.29
48 33 0.17
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
Found at i:85593339 original size:48 final size:48
Alignment explanation
Indices: 85593263--85593477 Score: 229
Period size: 48 Copynumber: 4.7 Consensus size: 48
85593253 TACCACGGTT
* *
85593263 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTG
* *
85593311 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTG
* * * *
85593359 ATTCAT-TAACATAGTGCTAAGTGGATATA-C-C-A-T-GAT-TA---
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTG
* * *
85593397 A-ACATGTAACGTGGTGCTAAGTGGATATTCCACGGTTACATATACTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTG
* *
85593444 ATTCAT-TAACGTGGTGCTAAGTGGATATGCCACG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACG
85593478 GATAAACATG
Statistics
Matches: 138, Mismatches: 18, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
37 3 0.02
38 21 0.15
39 1 0.01
40 1 0.01
41 2 0.01
42 3 0.02
43 3 0.02
44 2 0.01
45 1 0.01
46 1 0.01
47 48 0.35
48 52 0.38
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTG
Found at i:85593424 original size:85 final size:85
Alignment explanation
Indices: 85593313--85593519 Score: 317
Period size: 85 Copynumber: 2.4 Consensus size: 85
85593303 ACATATTGAT
*
85593313 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATAGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATACTGATTCATTAACATAGTGCTA
*
85593378 AGTGGATATACCA-TGATTAA
66 AGTGGATATACCACGGA-TAA
* * *
85593398 ACATGTAACGTGGTGCTAAGTGGATATTCCACGGTTACATATACTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATACTGATTCATTAACATAGTGCTA
*
85593463 AGTGGATATGCCACGGATAA
66 AGTGGATATACCACGGATAA
* * *
85593483 ACATGGAACATGGTGCTAAGTGGATATGCCATGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
85593520 TACATGTTAA
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
85 109 0.98
86 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATACTGATTCATTAACATAGTGCTA
AGTGGATATACCACGGATAA
Found at i:85603949 original size:42 final size:42
Alignment explanation
Indices: 85603834--85603995 Score: 162
Period size: 42 Copynumber: 3.8 Consensus size: 42
85603824 TACCGTACCA
* * * *
85603834 ATGCCATATCCCAGATATAGTCTTATATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATAGTCTTACACGAAATCTCATATCG
** * * **
85603876 ATGTGAATAGCCCAGCTATAGTCTTACACGAAATCTCACGTCG
1 ATG-CCATATCCCAGATATAGTCTTACACGAAATCTCATATCG
* * * *
85603919 ATGCCATATCCCAGATATGGTCTTATACGAAGTCTCATACCG
1 ATGCCATATCCCAGATATAGTCTTACACGAAATCTCATATCG
* * *
85603961 ATACCATATCCCAGATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATAGTCTTACACGAAATCT
85603996 TAGTAACCCT
Statistics
Matches: 95, Mismatches: 24, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
42 63 0.66
43 32 0.34
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATAGTCTTACACGAAATCTCATATCG
Found at i:85611509 original size:16 final size:15
Alignment explanation
Indices: 85611482--85611515 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
85611472 ATAACAAGTA
*
85611482 TATAATTATATTTAT
1 TATAATTATATTGAT
85611497 TATAATATATATTGAT
1 TATAAT-TATATTGAT
85611513 TAT
1 TAT
85611516 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (15 bp):
TATAATTATATTGAT
Found at i:85618747 original size:41 final size:41
Alignment explanation
Indices: 85618702--85618819 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
85618692 TGAAAGATAA
85618702 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
85618743 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
85618773 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
85618814 ATGTAG
1 ATGTAG
85618820 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:85618758 original size:71 final size:71
Alignment explanation
Indices: 85618670--85618831 Score: 324
Period size: 71 Copynumber: 2.3 Consensus size: 71
85618660 GAGATGTATC
85618670 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
85618735 AGGACA
66 AGGACA
85618741 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
85618806 AGGACA
66 AGGACA
85618812 CCATGTAGACAAGAGAGCTA
1 CCATGTAGACAAGAGAGCTA
85618832 TGAGACAAAT
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:85625236 original size:27 final size:27
Alignment explanation
Indices: 85625218--85625402 Score: 221
Period size: 27 Copynumber: 6.9 Consensus size: 27
85625208 CTTGATTTGT
*
85625218 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
85625245 AGAATTATCGTTTCACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * * *
85625272 AAAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
85625299 AGAATTACCATTTTACCCTTGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
85625326 AGAATTATCGTTTTACCCTTGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
85625353 AAAATTACCATTTTA-CCTC-AGTTTAC
1 AGAATTACCATTTTACCCTCGA-TTTAC
*
85625379 AAAATTACCATTTTACCCTCGATT
1 AGAATTACCATTTTACCCTCGATT
85625403 GTGAAATTAG
Statistics
Matches: 137, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.01
26 23 0.17
27 112 0.82
28 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:85625323 original size:81 final size:81
Alignment explanation
Indices: 85625206--85625402 Score: 281
Period size: 81 Copynumber: 2.4 Consensus size: 81
85625196 TACTGAAATG
* * *
85625206 CCCTTGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTCACCCTCGATTTA
* *
85625271 CAAAATTATCGTTTTA
66 CAAAATTACCATTTTA
* * *
85625287 CCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTATCGTTTTACCCTTGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTCACCCTCGATTTA
85625352 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* *
85625368 -CCTC-AGTTTACAAAATTACCATTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
85625403 GTGAAATTAG
Statistics
Matches: 104, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 1 0.01
80 30 0.29
81 73 0.70
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:85625510 original size:54 final size:54
Alignment explanation
Indices: 85625433--85625659 Score: 176
Period size: 54 Copynumber: 4.2 Consensus size: 54
85625423 CTGTGGATAG
* * **
85625433 AATTACCAAAATACCTCTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCACTGGTTTACAAAATTACCAAAATACCCTC-AGTTTGTAA
* *** * *
85625487 AATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTG-AA
1 AATTACCAAAATACCACTGGTTTACAAAATTACCAAAATACCCTCAGTTTGTAA
* * * * *
85625540 AATTACCAAAATACCCCTGATTTACAAAATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCACTGGTTTACAAAATTACCA-AAATACCC-TCAGTTTGT-AA
* * ** * *
85625596 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT-TGTTTGTAG
1 AATTACCA-AAATACCACTGGTTTACAAAATTACCAAAATACCCTCAGTTTGTAA
*
85625649 ATTTACCAAAA
1 AATTACCAAAA
85625660 CACCCTTGTA
Statistics
Matches: 137, Mismatches: 28, Indels: 17
0.75 0.15 0.09
Matches are distributed among these distances:
52 1 0.01
53 44 0.32
54 53 0.39
55 3 0.02
56 36 0.26
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCACTGGTTTACAAAATTACCAAAATACCCTCAGTTTGTAA
Found at i:85625542 original size:80 final size:81
Alignment explanation
Indices: 85625433--85625581 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 81
85625423 CTGTGGATAG
* ** *
85625433 AATTACCAAAATACCTCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCGAA
1 AATTACCAAAATACCTCTAATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACAGAA
85625497 ATACCACTGGTTTGTGA
65 ATACCACTGGTTTGTGA
*
85625514 AATTACCGAAATACC-CTCAATTTG-AAAATTACCAAAATACCCCTGATTTACAAAATTACAGAA
1 AATTACCAAAATACCTCT-AATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAA
85625577 ATACC
65 ATACC
85625582 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
80 41 0.67
81 20 0.33
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (81 bp):
AATTACCAAAATACCTCTAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:85625557 original size:27 final size:27
Alignment explanation
Indices: 85625433--85625582 Score: 164
Period size: 27 Copynumber: 5.6 Consensus size: 27
85625423 CTGTGGATAG
*
85625433 AATTACCAAAATACCTCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
85625460 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
85625487 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
85625514 AATTACCGAAATA-CCCTCAATTTG-AA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
85625540 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
85625567 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
85625583 TTGACTTTCT
Statistics
Matches: 106, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
26 21 0.20
27 85 0.80
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:85625655 original size:109 final size:108
Alignment explanation
Indices: 85625430--85625664 Score: 244
Period size: 109 Copynumber: 2.2 Consensus size: 108
85625420 CCCCTGTGGA
* ** * * *
85625430 TAGAATTACCAAAATACCTCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCG
1 TAGAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTACTTTCTAAAATTACAG
***
85625495 AAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTG
66 AAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
* *
85625538 -AAAATTACCAAAATACCCCT-GATTTACAAAATTA-CAGAAATACCCTTGACTTTCTAAAAATT
1 TAGAATTACCAAAATACCCCTAG-TTTACAAAATTACCA-AAATACCCCT-ACTTTCT-AAAATT
* * * **
85625600 ATAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT-TGTTTG
62 ACAGAAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
* *
85625646 TAGATTTACCAAAACACCC
1 TAGAATTACCAAAATACCC
85625665 TTGTAGGATG
Statistics
Matches: 103, Mismatches: 19, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
106 3 0.03
107 37 0.36
108 9 0.09
109 54 0.52
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (108 bp):
TAGAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTACTTTCTAAAATTACAG
AAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
Found at i:85625726 original size:26 final size:26
Alignment explanation
Indices: 85625685--85625757 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 26
85625675 AAATGACTAA
*
85625685 AATACCCCTAATAGGTAAAAAGACCGT
1 AATACCCCT-GTAGGTAAAAAGACCGT
**
85625712 AA-AGCCCCTGTAGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGTAAAAAGACCGT
*
85625738 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTA-GGTAAAA
85625758 TGACGAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 24 0.63
27 14 0.37
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (26 bp):
AATACCCCTGTAGGTAAAAAGACCGT
Found at i:85626606 original size:25 final size:24
Alignment explanation
Indices: 85626568--85626637 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
85626558 AGGAAGTGCT
*
85626568 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
85626592 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
85626617 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
85626638 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:85626650 original size:24 final size:24
Alignment explanation
Indices: 85626567--85626650 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
85626557 GAGGAAGTGC
* *
85626567 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
85626592 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
85626616 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
85626640 TAAAAGAGGCT
1 TAAAAG-GGCT
85626651 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:85626844 original size:42 final size:42
Alignment explanation
Indices: 85626785--85626876 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
85626775 TAGTCTCCCC
*
85626785 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
85626827 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
85626869 AAATGGGC
1 AAATGGGC
85626877 CTATGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:85626935 original size:31 final size:31
Alignment explanation
Indices: 85626900--85627040 Score: 231
Period size: 29 Copynumber: 4.7 Consensus size: 31
85626890 CGTTTACAGT
85626900 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85626931 AAAGGCTTCGG-CCA-TGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85626960 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85626991 AAAGGCTTC-G-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
85627020 CAAGGCTT-GGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
85627041 TCAAGACTAA
Statistics
Matches: 105, Mismatches: 1, Indels: 10
0.91 0.01 0.09
Matches are distributed among these distances:
29 58 0.55
30 12 0.11
31 35 0.33
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:85626966 original size:60 final size:60
Alignment explanation
Indices: 85626900--85627040 Score: 243
Period size: 60 Copynumber: 2.4 Consensus size: 60
85626890 CGTTTACAGT
85626900 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCA-TGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTC-GCCAGTGATATGATTTATGA
85626960 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGCCAGTGATATGATTTATGA
*
85627020 CAAGGCTT-GGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
85627041 TCAAGACTAA
Statistics
Matches: 79, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
58 5 0.06
59 12 0.15
60 62 0.78
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (60 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGCCAGTGATATGATTTATGA
Found at i:85629943 original size:11 final size:11
Alignment explanation
Indices: 85629925--85630020 Score: 82
Period size: 11 Copynumber: 9.5 Consensus size: 11
85629915 CAATATTGAT
85629925 ATGATATGTAC
1 ATGATATGTAC
*
85629936 ATGGTATGT--
1 ATGATATGTAC
* *
85629945 ATGGTATGCAC
1 ATGATATGTAC
85629956 ATGATATGT--
1 ATGATATGTAC
*
85629965 ATGATATGCAC
1 ATGATATGTAC
85629976 ATGATATGTAC
1 ATGATATGTAC
*
85629987 --GATATGCAC
1 ATGATATGTAC
85629996 ATGATATGT--
1 ATGATATGTAC
*
85630005 ATGATATGCAC
1 ATGATATGTAC
85630016 ATGAT
1 ATGAT
85630021 GTATTCATAA
Statistics
Matches: 68, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
9 32 0.47
11 36 0.53
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.34
Consensus pattern (11 bp):
ATGATATGTAC
Found at i:85629947 original size:20 final size:20
Alignment explanation
Indices: 85629924--85630020 Score: 158
Period size: 20 Copynumber: 4.8 Consensus size: 20
85629914 ACAATATTGA
* *
85629924 TATGATATGTACATGGTATG
1 TATGATATGCACATGATATG
*
85629944 TATGGTATGCACATGATATG
1 TATGATATGCACATGATATG
85629964 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
85629984 TACGATATGCACATGATATG
1 TATGATATGCACATGATATG
85630004 TATGATATGCACATGAT
1 TATGATATGCACATGAT
85630021 GTATTCATAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 71 1.00
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:85629968 original size:9 final size:9
Alignment explanation
Indices: 85629924--85630012 Score: 52
Period size: 9 Copynumber: 9.0 Consensus size: 9
85629914 ACAATATTGA
85629924 TATGATATG
1 TATGATATG
*
85629933 TACATGGTATG
1 T--ATGATATG
*
85629944 TATGGTATG
1 TATGATATG
*
85629953 CACATGATATG
1 --TATGATATG
85629964 TATGATATG
1 TATGATATG
*
85629973 CACATGATATG
1 --TATGATATG
*
85629984 TACGATATG
1 TATGATATG
*
85629993 CACATGATATG
1 --TATGATATG
85630004 TATGATATG
1 TATGATATG
85630013 CACATGATGT
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
9 32 0.52
11 30 0.48
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (9 bp):
TATGATATG
Found at i:85630106 original size:26 final size:26
Alignment explanation
Indices: 85630070--85630166 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
85630060 GAGGAAGTGC
85630070 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
85630095 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
85630121 AAAAGGGCTTATGCCCCAATTTACC-
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
85630146 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
85630167 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
25 26 0.41
26 38 0.59
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:85630153 original size:51 final size:50
Alignment explanation
Indices: 85630070--85630179 Score: 161
Period size: 51 Copynumber: 2.2 Consensus size: 50
85630060 GAGGAAGTGC
*
85630070 AAAAGGG-TTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTTATGCCCCAG-TTATT
*
85630120 GAAAAGGGCTTATGCCCCAATTTACC-AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTTATGCCCCAGTTATT
85630170 AAAAGAGGCT
1 AAAAG-GGCT
85630180 AGGCCTCCAG
Statistics
Matches: 55, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
49 5 0.09
50 9 0.16
51 25 0.45
52 16 0.29
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTTATGCCCCAGTTATT
Found at i:85630179 original size:25 final size:24
Alignment explanation
Indices: 85630070--85630193 Score: 108
Period size: 26 Copynumber: 5.0 Consensus size: 24
85630060 GAGGAAGTGC
**
85630070 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAG-TTA-TT
85630095 AAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAG-TTATT
* **
85630120 GAAAAGGGCTTATGCCCCAATTTACC
1 -AAAAGGGCTTATGCCCC-AGTTATT
*
85630146 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
85630170 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85630194 ATGATAAAGC
Statistics
Matches: 83, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
24 13 0.16
25 34 0.41
26 35 0.42
27 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:85632304 original size:27 final size:27
Alignment explanation
Indices: 85632274--85632443 Score: 225
Period size: 27 Copynumber: 6.3 Consensus size: 27
85632264 TACTGAAATG
* *
85632274 CCCTTGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
85632301 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
85632328 CCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
85632355 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* **
85632382 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
85632409 CCCTCGATTTA-AAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
85632435 CCCTCGATT
1 CCCTCGATT
85632444 GTGAAATTAC
Statistics
Matches: 125, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 21 0.17
27 104 0.83
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:85632389 original size:81 final size:80
Alignment explanation
Indices: 85632274--85632443 Score: 268
Period size: 81 Copynumber: 2.1 Consensus size: 80
85632264 TACTGAAATG
* * *
85632274 CCCTTGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
* *
85632339 CAAAATTATCGTTTTA
66 -AAAATTACCATTTTA
* *
85632355 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
85632420 AAAATTACCATTTTA
66 AAAATTACCATTTTA
85632435 CCCTCGATT
1 CCCTCGATT
85632444 GTGAAATTAC
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 22 0.27
81 60 0.73
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (80 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
AAAATTACCATTTTA
Found at i:85632505 original size:27 final size:27
Alignment explanation
Indices: 85632475--85632600 Score: 171
Period size: 27 Copynumber: 4.7 Consensus size: 27
85632465 TGTAAGATAG
85632475 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
85632502 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
85632529 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
** * * *
85632556 AATTACTGAAATACCCTTAATTTGAAA
1 AATTACCAAAATACCCCTAGTTTGTAA
85632583 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
85632601 GATTTACAAA
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:85632515 original size:54 final size:54
Alignment explanation
Indices: 85632442--85632600 Score: 173
Period size: 54 Copynumber: 2.9 Consensus size: 54
85632432 TTACCCTCGA
*
85632442 TTGTGAAATTACTGAAATACCCCTGTAAGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACTGAAATACCCCTGTAAGATAAAATTACCAAAATACCCCTAGT
* ** ** * * *
85632496 TTGTAAAATTACCAAAATACCCCTAGTTTG-TAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACTGAAATACCCCT-GTAAGATAAAATTACCAAAATACCCCTAGT
85632550 TTGTGAAATTACTGAAATA-CCCT-TAATTTGA-AAAATTACCAAAATACCCCT
1 TTGTGAAATTACTGAAATACCCCTGTAA---GATAAAATTACCAAAATACCCCT
85632601 GATTTACAAA
Statistics
Matches: 84, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
51 1 0.01
53 4 0.05
54 76 0.90
55 3 0.04
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.30
Consensus pattern (54 bp):
TTGTGAAATTACTGAAATACCCCTGTAAGATAAAATTACCAAAATACCCCTAGT
Found at i:85632541 original size:81 final size:81
Alignment explanation
Indices: 85632442--85632600 Score: 196
Period size: 81 Copynumber: 2.0 Consensus size: 81
85632432 TTACCCTCGA
* * * * *
85632442 TTGTGAAATTACTGAAATACCCCT-GTAAGAT-AGAATTACCAAAATACCCCTAGTTTGTAAAAT
1 TTGTAAAATTACCGAAATACCACTGGTAAG-TGA-AATTACCAAAATACCCCTAATTTGAAAAAT
85632505 TACCAAAATACCCCTAGT
64 TACCAAAATACCCCTAGT
** ** *
85632523 TTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTACTGAAATACCCTTAATTTGAAAAATTA
1 TTGTAAAATTACCGAAATACCACTGGTAAGTGAAATTACCAAAATACCCCTAATTTGAAAAATTA
85632588 CCAAAATACCCCT
66 CCAAAATACCCCT
85632601 GATTTACAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
81 62 0.94
82 4 0.06
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.30
Consensus pattern (81 bp):
TTGTAAAATTACCGAAATACCACTGGTAAGTGAAATTACCAAAATACCCCTAATTTGAAAAATTA
CCAAAATACCCCTAGT
Found at i:85632613 original size:54 final size:54
Alignment explanation
Indices: 85632475--85632683 Score: 181
Period size: 54 Copynumber: 3.8 Consensus size: 54
85632465 TGTAAGATAG
* ** ** * * *
85632475 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCACTGA-TTTACAAAATTACTGAAATACCCTTAATTTGAAA
* * ***
85632529 AATTACCGAAATACCACTGGTTTGTGAAATTACTGAAATACCCTTAATTTGAAA
1 AATTACCAAAATACCACTGATTTACAAAATTACTGAAATACCCTTAATTTGAAA
* * *
85632583 AATTACCAAAATACCCCTGATTTACAAAATTA-TAGAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCACTGATTTACAAAATTACT-GAAATACCCTT-AATTT-GAAA
* * *
85632639 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTT
1 AATTACCA-AAATACCACTGATTTACAAAATTACTGAAATACCCTT
85632684 GGTTTGTAGA
Statistics
Matches: 128, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
53 1 0.01
54 81 0.63
55 5 0.04
56 40 0.31
57 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCACTGATTTACAAAATTACTGAAATACCCTTAATTTGAAA
Found at i:85632685 original size:27 final size:27
Alignment explanation
Indices: 85632500--85632688 Score: 118
Period size: 27 Copynumber: 6.9 Consensus size: 27
85632490 CCTAGTTTGT
** * * **
85632500 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTGAAATACCCTTGGTTTAC
* **
85632527 AAAATTACCGAAATACCAC-TGGTTTGT
1 AAAATTACTGAAATACC-CTTGGTTTAC
* **
85632554 GAAATTACTGAAATACCCTTAATTTGA-
1 AAAATTACTGAAATACCCTTGGTTT-AC
** * *
85632581 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
*
85632608 AAAATTA-TAGAAATACCCTTGACTTT-C
1 AAAATTACT-GAAATACCCTTG-GTTTAC
*
85632635 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
85632664 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
85632689 GTAGATTTAC
Statistics
Matches: 133, Mismatches: 19, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
26 2 0.02
27 102 0.77
28 8 0.06
29 21 0.16
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:85632772 original size:27 final size:27
Alignment explanation
Indices: 85632729--85632802 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
85632719 AAATGACTAA
*
85632729 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
85632756 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
85632783 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
85632803 TGACAATATG
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:85632806 original size:27 final size:27
Alignment explanation
Indices: 85632742--85632806 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
85632732 ACCCCTAATA
*
85632742 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
85632769 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
85632796 GGTAAAATGAC
1 GGTAAAATGAC
85632807 AATATGCCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:85634879 original size:39 final size:39
Alignment explanation
Indices: 85634820--85635095 Score: 444
Period size: 39 Copynumber: 7.1 Consensus size: 39
85634810 ATTATATTAT
* * * * *
85634820 CAGCACAAAGCCTGCAGGACTTTAACCTGAATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
85634859 CAGCACGAAGCCTGTGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
85634898 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
85634937 CAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
85634976 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
85635015 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
85635054 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
85635093 CAG
1 CAG
85635096 TGTCTTGCAT
Statistics
Matches: 220, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 220 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:85637521 original size:25 final size:25
Alignment explanation
Indices: 85637488--85637552 Score: 96
Period size: 24 Copynumber: 2.6 Consensus size: 25
85637478 GTGCTAAAAA
* *
85637488 GGCTCTGCCCCAGTTTACCGGAAAG
1 GGCTTTGCCCCAGTTTACCAGAAAG
*
85637513 GGCTTTGCCCCAG-TTATCAGAAAG
1 GGCTTTGCCCCAGTTTACCAGAAAG
85637537 GGCTTTGCCCCAGTTT
1 GGCTTTGCCCCAGTTT
85637553 TTAAAAGAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 22 0.61
25 14 0.39
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.26
Consensus pattern (25 bp):
GGCTTTGCCCCAGTTTACCAGAAAG
Found at i:85637758 original size:42 final size:42
Alignment explanation
Indices: 85637699--85637832 Score: 241
Period size: 42 Copynumber: 3.2 Consensus size: 42
85637689 TAGTCTCCCC
*
85637699 AAATGGGCTTGCATACATTCATTGGCATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85637741 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* *
85637783 AAATGGGCTTTCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
85637825 AAATGGGC
1 AAATGGGC
85637833 CTAAGGGCCA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:85637891 original size:31 final size:31
Alignment explanation
Indices: 85637856--85637927 Score: 135
Period size: 31 Copynumber: 2.3 Consensus size: 31
85637846 CGTTTACAGT
85637856 AAAGGCTTCGGCCGAGTGATATGATTTATGA
1 AAAGGCTTCGGCCGAGTGATATGATTTATGA
*
85637887 AAAGGTTTCGGCCGAGTGATATGATTTATGA
1 AAAGGCTTCGGCCGAGTGATATGATTTATGA
85637918 AAAGGCTTCG
1 AAAGGCTTCG
85637928 ACCCAGTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCGAGTGATATGATTTATGA
Found at i:85649618 original size:43 final size:43
Alignment explanation
Indices: 85649552--85649637 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
85649542 ATCACATGTA
* *
85649552 TCGCATCCATTATGAACTCGGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAAATCGGACCACTCAACGAGCTCGGATGC
*
85649595 TCGCATCCATAATGAAATTGGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAAATCGGACCACTCAACGAGCTCGGATGC
85649638 CACAAATATC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (43 bp):
TCGCATCCATAATGAAATCGGACCACTCAACGAGCTCGGATGC
Found at i:85652768 original size:12 final size:13
Alignment explanation
Indices: 85652751--85652788 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
85652741 ATCTTGGAAT
85652751 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
85652763 ATTAAGAACACATA
1 ATTAAGAACA-AGA
85652777 ATTAAGAACAAG
1 ATTAAGAACAAG
85652789 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:85661689 original size:2 final size:2
Alignment explanation
Indices: 85661682--85661721 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
85661672 ATGTAAGACC
85661682 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85661722 GGCATTGGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85669074 original size:13 final size:13
Alignment explanation
Indices: 85669056--85669097 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
85669046 TTGGACTTCC
85669056 TCACACGGGCGTG
1 TCACACGGGCGTG
85669069 TCACACGGGCGTG
1 TCACACGGGCGTG
*
85669082 TCACACGGTCGTG
1 TCACACGGGCGTG
85669095 TCA
1 TCA
85669098 ATTTGGCAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:85669203 original size:13 final size:13
Alignment explanation
Indices: 85669185--85669210 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85669175 CAGTAATCGT
85669185 ACACGGGCGTGTC
1 ACACGGGCGTGTC
85669198 ACACGGGCGTGTC
1 ACACGGGCGTGTC
85669211 CTTGCCGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:85671999 original size:29 final size:29
Alignment explanation
Indices: 85671967--85672102 Score: 193
Period size: 29 Copynumber: 4.7 Consensus size: 29
85671957 ATACCCTCCG
** * *
85671967 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
85671996 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
85672025 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
85672054 AGCAT-GCACACTTAGTGCCATATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
85672083 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
85672103 ATCTCGTCAC
Statistics
Matches: 96, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:85672005 original size:58 final size:58
Alignment explanation
Indices: 85671951--85672102 Score: 171
Period size: 58 Copynumber: 2.6 Consensus size: 58
85671941 CCGCACACAC
* * * * *
85671951 AGTGCCATA-CCCTCCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACTT
1 AGTGCCATATACCTCC-AGCACGCACACCCAGTGCCATATATTTCCAGCATGCACACTT
** **
85672009 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCATGCACACTT
** **
85672067 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 AGTGCCATATACCTCCAGCACGCACACCCAGTGCCA
85672103 ATCTCGTCAC
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
58 81 0.96
59 3 0.04
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
AGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCATGCACACTT
Found at i:85675788 original size:29 final size:29
Alignment explanation
Indices: 85675760--85675861 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
85675750 CCTCCGAGCT
** * * *
85675760 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
85675789 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85675818 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85675847 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
85675862 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:85683565 original size:29 final size:29
Alignment explanation
Indices: 85683537--85683638 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
85683527 CCTCCGAGCT
** * * *
85683537 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
85683566 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85683595 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85683624 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
85683639 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:85691342 original size:29 final size:29
Alignment explanation
Indices: 85691314--85691415 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
85691304 CCTCCGAGCT
** * * *
85691314 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
85691343 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85691372 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85691401 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
85691416 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:85699105 original size:29 final size:28
Alignment explanation
Indices: 85699086--85699178 Score: 141
Period size: 29 Copynumber: 3.2 Consensus size: 28
85699076 TCGCACACCC
* *
85699086 AGTGCCGTATTTTTCCAGCTGCACACTT
1 AGTGCCATATATTTCCAGCTGCACACTT
85699114 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGC-TGCACACTT
*
85699143 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGC-TGCACACTT
85699172 AGTGCCA
1 AGTGCCA
85699179 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
28 17 0.28
29 44 0.72
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (28 bp):
AGTGCCATATATTTCCAGCTGCACACTT
Found at i:85707973 original size:58 final size:57
Alignment explanation
Indices: 85707873--85707993 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 57
85707863 TATGAAAAAA
85707873 GAAAAAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAG
1 GAAAAAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAG
** ***
85707930 GAAAGAAAAGAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAG
1 GAAA-AAAAGAAAAAAAAATGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAG
*
85707988 GGAAAA
1 GAAAAA
85707994 GGGGGAGGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
57 8 0.15
58 44 0.80
59 3 0.05
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (57 bp):
GAAAAAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAG
Found at i:85715462 original size:58 final size:58
Alignment explanation
Indices: 85715366--85715477 Score: 147
Period size: 58 Copynumber: 1.9 Consensus size: 58
85715356 ATGAAAAAAA
85715366 AAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGGAAAG
1 AAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGGAAAG
** ***
85715424 AAAAGAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAAGAAAAAAAAATGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
85715478 GAAAAGGGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
57 2 0.04
58 42 0.89
59 3 0.06
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (58 bp):
AAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGGAAAG
Found at i:85730326 original size:15 final size:16
Alignment explanation
Indices: 85730301--85730333 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
85730291 GCCCTTCGGG
*
85730301 ACTTATCACATTTATC
1 ACTTATCACATTCATC
85730317 ACTT-TCACATTCATC
1 ACTTATCACATTCATC
85730332 AC
1 AC
85730334 ATTGGCCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.39
Consensus pattern (16 bp):
ACTTATCACATTCATC
Found at i:85730429 original size:49 final size:49
Alignment explanation
Indices: 85730302--85730706 Score: 658
Period size: 49 Copynumber: 8.4 Consensus size: 49
85730292 CCCTTCGGGA
* *
85730302 CTTATCACAT-T-TAT-CACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85730348 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85730395 CTTATCACATTTATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85730444 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85730493 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85730542 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85730591 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85730640 CTTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85730689 CTTATCACATATATATAC
1 CTTATCACATATATATAC
85730707 CTCATACAAA
Statistics
Matches: 341, Mismatches: 13, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
45 1 0.00
46 10 0.03
47 36 0.11
49 294 0.86
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:85734122 original size:40 final size:40
Alignment explanation
Indices: 85734073--85734273 Score: 350
Period size: 40 Copynumber: 5.0 Consensus size: 40
85734063 CGAATACACG
* *
85734073 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
85734113 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
85734153 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
85734193 TCACTAGCACGAATGCTCTTCGGGACTTAGCCTGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
85734233 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
85734272 TC
1 TC
85734274 GTCGAGACTT
Statistics
Matches: 155, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 4 0.03
40 151 0.97
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:85734396 original size:38 final size:38
Alignment explanation
Indices: 85734327--85734401 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
85734317 GAATTTTAAT
*
85734327 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* * * *
85734365 CCGGACATAATTTCT-TCATATAGTCAGCGGGTTTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
85734402 AACTCGGATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:85736590 original size:15 final size:16
Alignment explanation
Indices: 85736565--85736597 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
85736555 GCCCTTCGGG
*
85736565 ACTTATCACATTTATC
1 ACTTATCACATTCATC
85736581 ACTT-TCACATTCATC
1 ACTTATCACATTCATC
85736596 AC
1 AC
85736598 ATTGGCCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.39
Consensus pattern (16 bp):
ACTTATCACATTCATC
Found at i:85736735 original size:49 final size:49
Alignment explanation
Indices: 85736580--85737015 Score: 734
Period size: 49 Copynumber: 9.0 Consensus size: 49
85736570 TCACATTTAT
* * *
85736580 CACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
* *
85736629 C-C-TTCACATTCATCACATCGGCCATTAGGCCTTA-CACATTTATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
* * *
85736675 CACTTTCACATTCTTCACGTCGGCCATTAGGCCTTGTCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
85736724 CACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
85736773 CACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
85736822 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
* *
85736871 CACTTTCACATTCATCACGTCGGCCATTAGGCGTTATCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
85736920 CACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
85736969 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
85737016 TACCTCATAC
Statistics
Matches: 365, Mismatches: 19, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
46 11 0.03
47 30 0.08
48 30 0.08
49 294 0.81
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (49 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
Done.