Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 276 of 433
Found at i:85739956 original size:6 final size:6
Alignment explanation
Indices: 85739926--85740056 Score: 79
Period size: 6 Copynumber: 21.3 Consensus size: 6
85739916 AAGAAACATT
* * *
85739926 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
85739975 ATCAGA ATCAGA ATCAGA ATTAGA ATTAG- GTGACAGA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * * * *
85740024 ATAAGT ATCAGGT AGCAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-GA ATCAGA ATCAGA ATCAGA AT
85740057 ATGAATGCAA
Statistics
Matches: 96, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
5 3 0.03
6 80 0.83
7 11 0.11
8 2 0.02
ACGTcount: A:0.48, C:0.12, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:85739976 original size:19 final size:19
Alignment explanation
Indices: 85739952--85740022 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
85739942 AAATGAGAAT
85739952 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
*
85739971 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTGA
* *
85739988 TCAGAATTAGAATTAGGTGA
1 -CAGAATCAGAATCAGGTGA
*
85740008 CAGAATTAGAATCAG
1 CAGAATCAGAATCAG
85740023 AATAAGTATC
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 1 0.02
18 13 0.30
19 29 0.66
20 1 0.02
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.20
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:85739988 original size:37 final size:37
Alignment explanation
Indices: 85739935--85740034 Score: 137
Period size: 37 Copynumber: 2.7 Consensus size: 37
85739925 TATCAGAACT
* *
85739935 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
* *
85739972 AGAATCAGAATCAGAATCAGAATTAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
* * *
85740009 AGAATTAGAATCAGAATAAGTATCAG
1 AGAATCAGAATCAGAATCAGAATCAG
85740035 GTAGCAGAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:85740056 original size:37 final size:37
Alignment explanation
Indices: 85739935--85740056 Score: 132
Period size: 37 Copynumber: 3.5 Consensus size: 37
85739925 TATCAGAACT
* *
85739935 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATAAGAATCAGGTGAC
* * *
85739972 AGAATCAGAATCAGAATCAGAATTAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATAAGAATCAGGTGAC
*
85740009 AGAAT-----T-AGAATCAGAATAAGTATCAGGT-AGC
1 AGAATCAAAATCAGAATCAGAATAAGAATCAGGTGA-C
85740040 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
85740057 ATGAATGCAA
Statistics
Matches: 71, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
30 1 0.01
31 25 0.35
32 1 0.01
36 1 0.01
37 43 0.61
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATAAGAATCAGGTGAC
Found at i:85740057 original size:31 final size:31
Alignment explanation
Indices: 85739947--85740062 Score: 108
Period size: 31 Copynumber: 3.5 Consensus size: 31
85739937 AATCAAAATG
*
85739947 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATAAGAATCAGGTGACAGAATC
* *
85739978 AGAATCAGAATCAGAATTAGAATTAGGTGACAGAATT
1 AGAATCAGAAT----A--AGAATCAGGTGACAGAATC
*
85740015 AGAATCAGAATAAGTATCAGGT-AGCAGAATC
1 AGAATCAGAATAAGAATCAGGTGA-CAGAATC
* *
85740046 AAAATCAGAATATGAAT
1 AGAATCAGAATAAGAAT
85740063 GCAATCCCAA
Statistics
Matches: 69, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
30 1 0.01
31 39 0.57
33 1 0.01
37 28 0.41
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATAAGAATCAGGTGACAGAATC
Found at i:85740589 original size:27 final size:27
Alignment explanation
Indices: 85740559--85740806 Score: 307
Period size: 27 Copynumber: 9.2 Consensus size: 27
85740549 AACACCCTAG
* *
85740559 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * *
85740586 GGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* *
85740613 GGGTAAAATAGTGATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * *
85740640 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
85740667 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
85740694 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
85740721 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* *
85740748 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*** ** *
85740775 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
85740802 GGGTA
1 GGGTA
85740807 TTTTAGTAAT
Statistics
Matches: 191, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 191 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (27 bp):
GGGTAAAATGGTAATTTTGTAAATCGA
Found at i:85740788 original size:54 final size:54
Alignment explanation
Indices: 85740559--85740806 Score: 343
Period size: 54 Copynumber: 4.6 Consensus size: 54
85740549 AACACCCTAG
* * *
85740559 GGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * *
85740613 GGGTAAAATAGTGATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* *
85740667 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * *
85740721 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
*** ** *
85740775 GGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTA
85740807 TTTTAGTAAT
Statistics
Matches: 173, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 173 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (54 bp):
GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
Found at i:85743667 original size:30 final size:30
Alignment explanation
Indices: 85743581--85743711 Score: 155
Period size: 30 Copynumber: 4.5 Consensus size: 30
85743571 GACAAGATTG
* * * *
85743581 GCACTAAGTGTGC-AGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGA-GCTGAAAATTATATA
*
85743611 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
85743639 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
85743669 GCACTACGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
85743698 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85743712 GATTCACTAT
Statistics
Matches: 90, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 44 0.49
31 3 0.03
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:85743672 original size:58 final size:59
Alignment explanation
Indices: 85743581--85743711 Score: 160
Period size: 58 Copynumber: 2.2 Consensus size: 59
85743571 GACAAGATTG
* * * * *
85743581 GCACTAAGTGTGC-AGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
* *
85743639 GCACTAAGTGTGCGA-GCTGAAAATTATATAGCACTACGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
85743698 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85743712 GATTCACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
57 2 0.03
58 39 0.62
59 22 0.35
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:85746149 original size:27 final size:26
Alignment explanation
Indices: 85746112--85746304 Score: 251
Period size: 27 Copynumber: 7.2 Consensus size: 26
85746102 GGCCATAATG
85746112 ATGACCGAAATACCCGCATAGGGTAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
*
85746139 ATGACCGAAATACCCGCATAAGGTAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
85746166 ATGACCGAAATACCCGCATAGGGTAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
**
85746193 ATGACTAAAATACCCTCATAGGGTAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
85746220 ATGACCGAAATACCCCATAGGGTAAA
1 ATGACCGAAATACCCCATAGGGTAAA
**
85746246 ATGATTGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* * * *
85746273 ATGACTGTAATACCCCTGTAAGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
85746300 ATGAC
1 ATGAC
85746305 TAATTTGCCT
Statistics
Matches: 152, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 25 0.16
27 127 0.84
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.19
Consensus pattern (26 bp):
ATGACCGAAATACCCCATAGGGTAAA
Found at i:85746278 original size:80 final size:80
Alignment explanation
Indices: 85746119--85746304 Score: 259
Period size: 80 Copynumber: 2.3 Consensus size: 80
85746109 ATGATGACCG
85746119 AAATACCCGCATAGGGTAAAATGACCGAAATACCCGCATAAGGTAAAATGACCGAAATACCCGCA
1 AAATACCC-CATAGGGTAAAATGACCGAAATACCCGCATAAGGTAAAATGACCGAAATACCCGCA
85746184 TAGGGTAAAATGACTA
65 TAGGGTAAAATGACTA
* **
85746200 AAATACCCTCATAGGGTAAAATGACCGAAATACCC-CATAGGGTAAAATGATTGAAATACCC-CT
1 AAATACCC-CATAGGGTAAAATGACCGAAATACCCGCATAAGGTAAAATGACCGAAATACCCGC-
*
85746263 ATAGGGTAAAATGACTG
64 ATAGGGTAAAATGACTA
* * *
85746280 TAATACCCCTGTAAGGTAAAATGAC
1 AAATACCCC-ATAGGGTAAAATGAC
85746305 TAATTTGCCT
Statistics
Matches: 95, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
79 2 0.02
80 59 0.62
81 34 0.36
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (80 bp):
AAATACCCCATAGGGTAAAATGACCGAAATACCCGCATAAGGTAAAATGACCGAAATACCCGCAT
AGGGTAAAATGACTA
Found at i:85750598 original size:16 final size:16
Alignment explanation
Indices: 85750573--85750603 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85750563 TTATCATACT
*
85750573 ATATATTAATTCAATC
1 ATATAATAATTCAATC
85750589 ATATAATAATTCAAT
1 ATATAATAATTCAAT
85750604 TTAACATTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAATAATTCAATC
Found at i:85754218 original size:40 final size:40
Alignment explanation
Indices: 85754172--85754357 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
85754162 GCTACTCATT
*
85754172 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
85754212 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
85754252 CAAATGCCTTC-GGATCTTAGTCTGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
85754292 CAATTGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
85754333 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85754358 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.89
41 11 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:85758197 original size:14 final size:15
Alignment explanation
Indices: 85758173--85758206 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
85758163 TTAAACTAGT
85758173 TTAATTAACTTAACC
1 TTAATTAACTTAACC
*
85758188 TTAATT-ACTTAAGC
1 TTAATTAACTTAACC
85758202 TTAAT
1 TTAAT
85758207 CATCAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.44
Consensus pattern (15 bp):
TTAATTAACTTAACC
Found at i:85759661 original size:25 final size:26
Alignment explanation
Indices: 85759627--85759675 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
85759617 TTCTCAACCC
*
85759627 AATTTTACCCTAG-TAAAATTTTGGT
1 AATTTTACCCCAGATAAAATTTTGGT
*
85759652 AATTTTACCCCCGATAAAATTTTG
1 AATTTTACCCCAGATAAAATTTTG
85759676 AGGAAATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (26 bp):
AATTTTACCCCAGATAAAATTTTGGT
Found at i:85764236 original size:25 final size:25
Alignment explanation
Indices: 85764199--85764246 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
85764189 CTATAATATG
* *
85764199 AAAATGACTATTTTGCCCTTAGGTA
1 AAAATGACTATTTTACCCCTAGGTA
85764224 AAAATGA-TCATTTTACCCCTAGG
1 AAAATGACT-ATTTTACCCCTAGG
85764247 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 19 0.95
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (25 bp):
AAAATGACTATTTTACCCCTAGGTA
Found at i:85764309 original size:11 final size:10
Alignment explanation
Indices: 85764277--85764330 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
85764267 CATGAGATTT
85764277 TGATAT-ACA
1 TGATATGACA
*
85764286 TGATTTGACA
1 TGATATGACA
85764296 TGATATGCACA
1 TGATATG-ACA
*
85764307 TGATATG-TA
1 TGATATGACA
85764316 TGATATGCACA
1 TGATATG-ACA
85764327 TGAT
1 TGAT
85764331 GTATTCATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 13 0.35
10 9 0.24
11 15 0.41
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:85764415 original size:25 final size:26
Alignment explanation
Indices: 85764377--85764445 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
85764367 GAGGAAGTGC
*
85764377 AAAAGGGC-TATGCCCCA-ATTACCGA
1 AAAAGGGCTTTTGCCCCAGATTACC-A
* *
85764402 AAAA-GGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGATTACCA
85764427 AAAAGGGCTTTTGCCCCAG
1 AAAAGGGCTTTTGCCCCAG
85764446 TTATTAAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
24 3 0.08
25 17 0.45
26 18 0.47
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGATTACCA
Found at i:85764449 original size:25 final size:25
Alignment explanation
Indices: 85764377--85764454 Score: 88
Period size: 25 Copynumber: 3.1 Consensus size: 25
85764367 GAGGAAGTGC
* * *
85764377 AAAAGGGC-TATGCCCCAATTACCGA
1 AAAAGGGCTTTTGCCCCAGTTATC-A
85764402 AAAA-GGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAG-TTATCA
*
85764427 AAAAGGGCTTTTGCCCCAGTTATTA
1 AAAAGGGCTTTTGCCCCAGTTATCA
85764452 AAA
1 AAA
85764455 GAGGCTAGGC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
24 3 0.07
25 25 0.54
26 18 0.39
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTATCA
Found at i:85764710 original size:31 final size:31
Alignment explanation
Indices: 85764667--85764750 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
85764657 TTGTTACAGT
85764667 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
85764698 AAAGCCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
85764729 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
85764751 CTGAGATTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:85768202 original size:40 final size:40
Alignment explanation
Indices: 85768137--85768342 Score: 322
Period size: 40 Copynumber: 5.2 Consensus size: 40
85768127 CATTTGAATG
*
85768137 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
85768177 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
85768217 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
85768257 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGCTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
85768297 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
85768337 ATATCC
1 ATATCC
85768343 AATTAAATCC
Statistics
Matches: 152, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 152 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:85774035 original size:57 final size:57
Alignment explanation
Indices: 85773954--85774066 Score: 145
Period size: 57 Copynumber: 2.0 Consensus size: 57
85773944 ATAAGTCCTC
* * ** * *
85773954 TCGAGCATATGTTATAGATTGGATTTAGCCTGGACGGGTAATCTAGATTAAGCTCTT
1 TCGAGCATATGTCATAAAAAGGATTTAGCCTGAACGGGTAATCTAGACTAAGCTCTT
* * *
85774011 TCGAGCATATGTCATAAAAAGGATTTATCCTGAACTGGTAATCTTGACTAAGCTCT
1 TCGAGCATATGTCATAAAAAGGATTTAGCCTGAACGGGTAATCTAGACTAAGCTCT
85774067 ATTGAGTATA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (57 bp):
TCGAGCATATGTCATAAAAAGGATTTAGCCTGAACGGGTAATCTAGACTAAGCTCTT
Found at i:85774141 original size:2 final size:2
Alignment explanation
Indices: 85774134--85774174 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
85774124 TTCTATTGAG
85774134 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
85774175 TGGAGATAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:85778689 original size:18 final size:18
Alignment explanation
Indices: 85778666--85778720 Score: 83
Period size: 18 Copynumber: 3.1 Consensus size: 18
85778656 CTTGGCCATT
*
85778666 TGCAGTAACAGTAAATAG
1 TGCAGTAACAGTAAACAG
*
85778684 TGCAGTAACAATAAACAG
1 TGCAGTAACAGTAAACAG
*
85778702 TGCAGAAACAGTAAACAG
1 TGCAGTAACAGTAAACAG
85778720 T
1 T
85778721 ATGCGAGTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:85779081 original size:27 final size:27
Alignment explanation
Indices: 85779051--85779150 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
85779041 CATCACACAG
* *
85779051 GGGAAAAACAGCCATCTTACCATATAA
1 GGGAAAAACAGTCATTTTACCATATAA
* * *
85779078 GGGAAAAATAGTTATTTTACCACATAA
1 GGGAAAAACAGTCATTTTACCATATAA
*
85779105 GGGCAAAACAGTCATTTTACCATATAA
1 GGGAAAAACAGTCATTTTACCATATAA
* *
85779132 -GGACAAAATAGTTATTTTA
1 GGGA-AAAACAGTCATTTTA
85779151 TCGATTAAGG
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.03
27 58 0.97
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (27 bp):
GGGAAAAACAGTCATTTTACCATATAA
Found at i:85779159 original size:27 final size:26
Alignment explanation
Indices: 85779067--85779160 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 26
85779057 AACAGCCATC
85779067 TTACCATATAAGGGA-AAAATAGTTATT
1 TTACCAT-TAA-GGACAAAATAGTTATT
* * * *
85779094 TTACCACATAAGGGCAAAACAGTCATT
1 TTACCA-TTAAGGACAAAATAGTTATT
85779121 TTACCATATAAGGACAAAATAGTTATT
1 TTACCAT-TAAGGACAAAATAGTTATT
*
85779148 TTATCGATTAAGG
1 TTA-CCATTAAGG
85779161 GTTAGGTACA
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
26 2 0.04
27 49 0.91
28 3 0.06
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (26 bp):
TTACCATTAAGGACAAAATAGTTATT
Found at i:85779401 original size:17 final size:18
Alignment explanation
Indices: 85779374--85779407 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
85779364 GTGGTTTACC
85779374 CGTGTGGGCCCACAGGCT
1 CGTGTGGGCCCACAGGCT
*
85779392 CGTG-GGGCCCATAGGC
1 CGTGTGGGCCCACAGGC
85779408 CCATTTGGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.12, C:0.32, G:0.41, T:0.15
Consensus pattern (18 bp):
CGTGTGGGCCCACAGGCT
Found at i:85783798 original size:26 final size:27
Alignment explanation
Indices: 85783762--85783871 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
85783752 GACCATGTTG
85783762 GACCAAAATACCCTCATAGGGT-AAAT
1 GACCAAAATACCCTCATAGGGTAAAAT
*
85783788 GACCAAAATACCCCCATAGGGTAAAAT
1 GACCAAAATACCCTCATAGGGTAAAAT
* * * *
85783815 AACCGAAATACCCTTATAAGGTAAAAT
1 GACCAAAATACCCTCATAGGGTAAAAT
* * *
85783842 GATCAAAATACTCCT-GTAAGGTAAAAT
1 GACCAAAATAC-CCTCATAGGGTAAAAT
85783869 GAC
1 GAC
85783872 TGATTTTCCC
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
26 21 0.30
27 47 0.66
28 3 0.04
ACGTcount: A:0.45, C:0.21, G:0.15, T:0.20
Consensus pattern (27 bp):
GACCAAAATACCCTCATAGGGTAAAAT
Found at i:85784375 original size:40 final size:41
Alignment explanation
Indices: 85784277--85784375 Score: 103
Period size: 40 Copynumber: 2.5 Consensus size: 41
85784267 CTATACTTTT
* *
85784277 ACTGTTACTGTAAAGGGCTAAAGCCCAAACACATGATTGTT
1 ACTGTTACTGAAAAGGGCTAAAGCCCAAACACATGATTGTC
* * * * **
85784318 TCTG-TATTGAGATGGGCTAAAGCCCAAACTGAT-ATTGTC
1 ACTGTTACTGAAAAGGGCTAAAGCCCAAACACATGATTGTC
*
85784357 ACTGTTACTAAAAAGGGCT
1 ACTGTTACTGAAAAGGGCT
85784376 TAGGTCTAAA
Statistics
Matches: 44, Mismatches: 13, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
39 8 0.18
40 33 0.75
41 3 0.07
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (41 bp):
ACTGTTACTGAAAAGGGCTAAAGCCCAAACACATGATTGTC
Found at i:85787511 original size:24 final size:24
Alignment explanation
Indices: 85787484--85787619 Score: 150
Period size: 24 Copynumber: 5.7 Consensus size: 24
85787474 GAGATGACTT
*
85787484 TGGCACTATGTGTACGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
*
85787508 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* * *
85787532 CGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
*
85787556 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
85787580 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
85787605 -GGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
85787620 GGTAAACATG
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
24 92 0.97
25 2 0.02
26 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:85787609 original size:72 final size:72
Alignment explanation
Indices: 85787484--85787620 Score: 193
Period size: 72 Copynumber: 1.9 Consensus size: 72
85787474 GAGATGACTT
* * ** *
85787484 TGGCACTATGTGTACGAATTTGAATGGCACTATGTGTGCGAATTTGTACGGCACTATGTGTGCGG
1 TGGCACTATGTGTACGAATTTGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
85787549 ATTTGTA
66 ATTTGTA
* * * *
85787556 TGGCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGAATTACTAAGGCACTATGTGTGCGG
1 TGGCACTATGTGTACGAATTTGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
85787621 GTAAACATGG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 56 1.00
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.34
Consensus pattern (72 bp):
TGGCACTATGTGTACGAATTTGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
ATTTGTA
Found at i:85790353 original size:42 final size:44
Alignment explanation
Indices: 85790289--85790377 Score: 130
Period size: 42 Copynumber: 2.1 Consensus size: 44
85790279 ATCGATTTGA
*
85790289 GATTTACGTGTAAGACCTTGTCTGGGAC-ATCGGCATCG-TATTT
1 GATTTACGTGTAAGACCCTGTCTGGGACAAT-GGCATCGATATTT
*
85790332 GATTT-CGTGTATGACCCTGTCTGGGACAATGGCATCGATATTT
1 GATTTACGTGTAAGACCCTGTCTGGGACAATGGCATCGATATTT
85790375 GAT
1 GAT
85790378 CACATGTAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
42 27 0.64
43 15 0.36
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (44 bp):
GATTTACGTGTAAGACCCTGTCTGGGACAATGGCATCGATATTT
Found at i:85799748 original size:57 final size:57
Alignment explanation
Indices: 85799676--85799786 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 57
85799666 AAGTCCTCTT
* * ** * *
85799676 GAGCTTATGTTATAAATTGGATTTAGC-TCGGACTGGTAATCCAGATTAAGCTCTTTA
1 GAGCATATGTCATAAAAGGGATTTAGCGT-GGACTAGTAATCCAGACTAAGCTCTTTA
*
85799733 GAGCATATGTCATAAAAGGGATTTAGCGTGGACTAGTAATCCTGACTAAGCTCT
1 GAGCATATGTCATAAAAGGGATTTAGCGTGGACTAGTAATCCAGACTAAGCTCT
85799787 ATTGAGTATA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
57 45 0.98
58 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (57 bp):
GAGCATATGTCATAAAAGGGATTTAGCGTGGACTAGTAATCCAGACTAAGCTCTTTA
Found at i:85799842 original size:61 final size:62
Alignment explanation
Indices: 85799751--85799894 Score: 182
Period size: 61 Copynumber: 2.3 Consensus size: 62
85799741 GTCATAAAAG
* * * * * * * *
85799751 GGATTTAGCGTGGACTAGTAATCCTGACTAAGCTCTATTGAGTAT-ATATATATTGGAGATA
1 GGATTTAGCCTGGACTGGTAACCCTAACTAACCTCTAATGAGTATAATATATATTGAAGACA
*
85799812 GGATTTAGCCTGGATTGGTAACCCTAACTAACCTCTAATGAGTATACATATATATTGAAGACA
1 GGATTTAGCCTGGACTGGTAACCCTAACTAACCTCTAATGAGTATA-ATATATATTGAAGACA
*
85799875 AGATTTAGCCTGGACTGGTA
1 GGATTTAGCCTGGACTGGTA
85799895 GTCCTATTGT
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
61 38 0.54
63 32 0.46
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (62 bp):
GGATTTAGCCTGGACTGGTAACCCTAACTAACCTCTAATGAGTATAATATATATTGAAGACA
Found at i:85801315 original size:40 final size:40
Alignment explanation
Indices: 85801248--85801417 Score: 220
Period size: 40 Copynumber: 4.3 Consensus size: 40
85801238 GCCCAAGTAT
*
85801248 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
85801287 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
85801327 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
85801367 CTTTGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
85801407 CTTCGGATCTT
1 CTTCGGGTCTT
85801418 TGTCCGGTTA
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 96 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:85809167 original size:40 final size:40
Alignment explanation
Indices: 85809121--85809277 Score: 217
Period size: 40 Copynumber: 3.9 Consensus size: 40
85809111 CGGGATTGAG
85809121 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
*
85809161 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
85809201 CCGGATATAATC-ACTAGCATAAATGCCTTTGGGACATAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
85809241 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTT
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTT
85809278 TGTCCGGTTA
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 98 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:85812393 original size:40 final size:40
Alignment explanation
Indices: 85812290--85812446 Score: 210
Period size: 40 Copynumber: 3.9 Consensus size: 40
85812280 CGGGATTGCG
85812290 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAG-
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
*
85812329 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
85812369 CCGGATATAATC-ACTAGCATAAATGCCTTTGGGACATAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGC
* *
85812409 CCGGATATAGCAACTCGCACGAAATGCCTTCGGATCTT
1 CCGGATATAACAACTCGCAC-AAATGCCTTCGGGTCTT
85812447 TGTCCGGTTA
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 39 0.39
40 47 0.47
41 14 0.14
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:85812809 original size:20 final size:20
Alignment explanation
Indices: 85812784--85812821 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
85812774 GTTTATTCGC
*
85812784 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
85812804 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
85812822 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:85819205 original size:20 final size:20
Alignment explanation
Indices: 85819180--85819217 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
85819170 GTTTATTCGC
*
85819180 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
85819200 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
85819218 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:85831190 original size:17 final size:17
Alignment explanation
Indices: 85831168--85831200 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
85831158 ACTTCCCTTC
85831168 TCATCTTTTATTTTCTT
1 TCATCTTTTATTTTCTT
*
85831185 TCATCTTTTCTTTTCT
1 TCATCTTTTATTTTCT
85831201 CCATAGTCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.70
Consensus pattern (17 bp):
TCATCTTTTATTTTCTT
Found at i:85831848 original size:8 final size:8
Alignment explanation
Indices: 85831835--85831871 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
85831825 CTAGATCGGC
85831835 AAAAGCCG
1 AAAAGCCG
85831843 AAAAGCCG
1 AAAAGCCG
85831851 AAAAGCCG
1 AAAAGCCG
* *
85831859 AAATGCCA
1 AAAAGCCG
85831867 AAAAG
1 AAAAG
85831872 ATGGTATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.54, C:0.22, G:0.22, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:85832331 original size:28 final size:28
Alignment explanation
Indices: 85832288--85832396 Score: 130
Period size: 28 Copynumber: 3.9 Consensus size: 28
85832278 GGAGGAAGCG
*
85832288 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTAT
*
85832316 TTCTGGTGGCTTTGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTAT
* * *
85832344 TTCTGGTGGCACTACCACAATTATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTAT
* * * *
85832372 ATCTGGTGACTCAGTCAC-AATATCT
1 TTCTGGTGGCTCTGCCACAAATATCT
85832397 GTTCTGGCAG
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
27 6 0.09
28 62 0.91
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTAT
Found at i:85840334 original size:40 final size:39
Alignment explanation
Indices: 85840169--85840352 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
85840159 AAATTGAATG
* * *
85840169 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
85840209 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
85840249 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
85840289 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
85840328 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
85840353 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:85840377 original size:80 final size:81
Alignment explanation
Indices: 85840209--85840397 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
85840199 GCTGGAAATT
* * * *
85840209 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
85840274 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
85840290 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
85840353 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
85840369 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
85840398 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:85847458 original size:40 final size:39
Alignment explanation
Indices: 85847293--85847476 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
85847283 AAATTGAATG
* * *
85847293 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
85847333 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
85847373 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
85847413 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
85847452 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
85847477 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:85847501 original size:80 final size:81
Alignment explanation
Indices: 85847333--85847521 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
85847323 GCTGGAAATT
* * * *
85847333 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
85847398 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
85847414 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
85847477 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
85847493 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
85847522 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:85854688 original size:40 final size:39
Alignment explanation
Indices: 85854523--85854706 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
85854513 AAATTGAATG
* * *
85854523 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
85854563 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
85854603 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
85854643 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
85854682 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
85854707 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:85854731 original size:80 final size:81
Alignment explanation
Indices: 85854563--85854751 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
85854553 GCTGGAAATT
* * * *
85854563 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
85854628 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
85854644 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
85854707 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
85854723 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
85854752 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:85857604 original size:46 final size:46
Alignment explanation
Indices: 85857554--85857726 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
85857544 TGGTTGAGCA
85857554 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
85857600 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
85857645 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
85857693 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
85857727 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:85857710 original size:93 final size:93
Alignment explanation
Indices: 85857551--85857721 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
85857541 GGATGGTTGA
* *
85857551 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85857616 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
85857644 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85857709 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85857722 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85865238 original size:47 final size:47
Alignment explanation
Indices: 85865120--85865290 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 47
85865110 GGATGGTTGA
*
85865120 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
85865168 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
* *
85865211 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCG-A-
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
85865259 --A-CGGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
85865291 TAGGGGCGGG
Statistics
Matches: 105, Mismatches: 9, Indels: 23
0.77 0.07 0.17
Matches are distributed among these distances:
42 2 0.02
43 33 0.31
44 1 0.01
45 3 0.03
46 29 0.28
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:85865552 original size:19 final size:20
Alignment explanation
Indices: 85865517--85865554 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
85865507 ATAAGGTGGT
85865517 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
85865537 AAGAT-ATGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
85865555 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:85874271 original size:23 final size:23
Alignment explanation
Indices: 85874231--85874277 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
85874221 TATAAATCCT
*
85874231 AATAAAAATAAGCTTAAAG-AGA
1 AATAAAAATAAGCCTAAAGTAGA
*
85874253 AATAAAAATTAGTCCTAAAGTAGA
1 AATAAAAATAAG-CCTAAAGTAGA
85874277 A
1 A
85874278 TAACACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 11 0.52
23 6 0.29
24 4 0.19
ACGTcount: A:0.60, C:0.06, G:0.13, T:0.21
Consensus pattern (23 bp):
AATAAAAATAAGCCTAAAGTAGA
Found at i:85876317 original size:55 final size:55
Alignment explanation
Indices: 85876218--85876339 Score: 154
Period size: 55 Copynumber: 2.2 Consensus size: 55
85876208 TATATAGTCC
** *
85876218 CATGCCCGTGTTAATCTAACAGGTTTGACCACAGTTGCTTGGCACGGGTGTGTCG
1 CATGCCCGTGTTAATCTAACAGGTTTGACCACAGTTGCAAGGCACGGGCGTGTCG
* * * * * *
85876273 CATGCTCGTGTTAATTTGACAGGTTTGGCCACGGTTTCAAGGCACGGGCGTGTCG
1 CATGCCCGTGTTAATCTAACAGGTTTGACCACAGTTGCAAGGCACGGGCGTGTCG
*
85876328 CACGCCCGTGTT
1 CATGCCCGTGTT
85876340 GTTTTGGCAG
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.16, C:0.25, G:0.30, T:0.29
Consensus pattern (55 bp):
CATGCCCGTGTTAATCTAACAGGTTTGACCACAGTTGCAAGGCACGGGCGTGTCG
Found at i:85876360 original size:55 final size:55
Alignment explanation
Indices: 85876258--85876361 Score: 127
Period size: 55 Copynumber: 1.9 Consensus size: 55
85876248 ACAGTTGCTT
* * * ***
85876258 GGCACGGGTGTGTCGCATGCTCGTGTTAATTTGACAGGTTTGGCCACGGTTTCAA
1 GGCACGGGCGTGTCGCACGCCCGTGTTAATTTGACAGGTTCACCCACGGTTTCAA
** *
85876313 GGCACGGGCGTGTCGCACGCCCGTGTTGTTTTGGCAGGTTCACCCACGG
1 GGCACGGGCGTGTCGCACGCCCGTGTTAATTTGACAGGTTCACCCACGG
85876362 CCATGTCGTA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 40 1.00
ACGTcount: A:0.13, C:0.25, G:0.35, T:0.27
Consensus pattern (55 bp):
GGCACGGGCGTGTCGCACGCCCGTGTTAATTTGACAGGTTCACCCACGGTTTCAA
Found at i:85878477 original size:80 final size:80
Alignment explanation
Indices: 85878393--85878541 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
85878383 TATGGTAACC
* * * *
85878393 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
85878457 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
85878473 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
85878538 CCGG
66 CCGG
85878542 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:85878483 original size:40 final size:38
Alignment explanation
Indices: 85878434--85878541 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
85878424 ATCACGATTT
*
85878434 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
85878474 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
85878514 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
85878542 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:85884296 original size:21 final size:20
Alignment explanation
Indices: 85884272--85884311 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
85884262 CTTATCCTAC
*
85884272 TCTCCTTCCTCTAGACTTTTT
1 TCTCCTACCTC-AGACTTTTT
*
85884293 TCTCCTACCTCAGCCTTTT
1 TCTCCTACCTCAGACTTTT
85884312 GCTGTTCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.10, C:0.38, G:0.05, T:0.47
Consensus pattern (20 bp):
TCTCCTACCTCAGACTTTTT
Found at i:85895235 original size:42 final size:41
Alignment explanation
Indices: 85895180--85895341 Score: 137
Period size: 42 Copynumber: 3.9 Consensus size: 41
85895170 TACACATAGA
* * *
85895180 ATCATACCAATGCCATATCCCAAATATGGTCTTACATAGGAT
1 ATCATATCGATGCCATATCCCAGATATGGTCTTACAT-GGAT
* * * * *
85895222 CTCATATTGATGCCAATAGCCTAGCTATGGTCTTACAT-GATT
1 ATCATATCGATGCC-ATATCCCAGATATGGTCTTACATGGA-T
* * * * *
85895264 GTCATATCGATGCCATGTCCCAGACATGGTCCTACATGAAAT
1 ATCATATCGATGCCATATCCCAGATATGGTCTTACATG-GAT
* * *
85895306 ATCATAACGATACCATATCCTAGATATGGTCTTACA
1 ATCATATCGATGCCATATCCCAGATATGGTCTTACA
85895342 CGTAAACTCA
Statistics
Matches: 92, Mismatches: 24, Indels: 8
0.74 0.19 0.06
Matches are distributed among these distances:
41 19 0.21
42 53 0.58
43 20 0.22
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (41 bp):
ATCATATCGATGCCATATCCCAGATATGGTCTTACATGGAT
Found at i:85904078 original size:19 final size:19
Alignment explanation
Indices: 85904023--85904079 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 19
85904013 GTTCTATTTA
*
85904023 TAAATATATAATC-TGTTT
1 TAAATATATTATCATGTTT
85904041 T-AATATATGCTGAATCATGTTT
1 TAAATATAT--T--ATCATGTTT
85904063 TAAATATATTATCATGT
1 TAAATATATTATCATGT
85904080 GAACGATATG
Statistics
Matches: 32, Mismatches: 1, Indels: 11
0.73 0.02 0.25
Matches are distributed among these distances:
17 7 0.22
18 1 0.03
19 7 0.22
21 4 0.12
22 6 0.19
23 7 0.22
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.47
Consensus pattern (19 bp):
TAAATATATTATCATGTTT
Found at i:85933254 original size:19 final size:19
Alignment explanation
Indices: 85933199--85933255 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
85933189 GTTCTATTTA
*
85933199 TAAATATATAATC-TGTTT
1 TAAATATATTATCATGTTT
*
85933217 TAATATATGTTGAATCATGTTT
1 TAA-ATATATT--ATCATGTTT
85933239 TAAATATATTATCATGT
1 TAAATATATTATCATGT
85933256 GAACGATATG
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 3 0.09
19 12 0.38
21 9 0.28
22 8 0.25
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (19 bp):
TAAATATATTATCATGTTT
Found at i:85937163 original size:9 final size:9
Alignment explanation
Indices: 85937131--85937169 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
85937121 ATTATTTTAT
85937131 TTAAAAATTA
1 TTAAAAA-TA
85937141 TATAAAAATA
1 T-TAAAAATA
85937151 -TAAAAATA
1 TTAAAAATA
85937159 TTAAAAATA
1 TTAAAAATA
85937168 TT
1 TT
85937170 CTTAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.30
9 10 0.37
10 3 0.11
11 6 0.22
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
TTAAAAATA
Found at i:85937165 original size:17 final size:19
Alignment explanation
Indices: 85937132--85937168 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
85937122 TTATTTTATT
85937132 TAAAAATTATATAAAAATA
1 TAAAAATTATATAAAAATA
85937151 TAAAAA-TAT-TAAAAATA
1 TAAAAATTATATAAAAATA
85937168 T
1 T
85937169 TCTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 3 0.17
19 6 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAAATTATATAAAAATA
Found at i:85941000 original size:91 final size:94
Alignment explanation
Indices: 85940875--85941049 Score: 241
Period size: 91 Copynumber: 1.9 Consensus size: 94
85940865 ATTTGGAGCT
* *
85940875 AAAATAAAAAAATATAATATTAAATTAAATTAATAAAACA-TGAATTAA-TAT-ATAGTACTATT
1 AAAATAAAAAAATATAATATTAAATTAAATTAATAAAACATTGAACTAATTATAATACTACTATT
*
85940937 AAAAGTAATATAGAAATTTGGAAAAAAGA
66 AAAAATAATATAGAAATTTGGAAAAAAGA
* *
85940966 AAAATAAAACACTATAATATTAAATTGAAA-TAATAAAACATTGAACTAATTTATACATACTACT
1 AAAATAAAAAAATATAATATTAAATT-AAATTAATAAAACATTGAACTAA-TTATA-ATACTACT
*
85941030 ATTAAAAATAATTTAGAAAT
63 ATTAAAAATAATATAGAAAT
85941050 CTAATATATA
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
91 34 0.47
92 10 0.14
94 3 0.04
96 25 0.35
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (94 bp):
AAAATAAAAAAATATAATATTAAATTAAATTAATAAAACATTGAACTAATTATAATACTACTATT
AAAAATAATATAGAAATTTGGAAAAAAGA
Found at i:85944455 original size:49 final size:47
Alignment explanation
Indices: 85944393--85944513 Score: 154
Period size: 49 Copynumber: 2.5 Consensus size: 47
85944383 TTAAGTCGAT
*
85944393 GCCATGTCCCAGACATGGTCTTACACTGACTA-TCGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTAAC-ACTCGAAA-CG-GGCCGAC
* * * *
85944442 GCCATGTCCCAGACATGGTCTTACACTAACACCTCTACACGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAACA-CTCGAAACGGGCCGAC
85944490 GCCATGTCCCAGACATGGTCTTAC
1 GCCATGTCCCAGACATGGTCTTAC
85944514 TCTTACACAT
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
48 30 0.46
49 31 0.48
50 4 0.06
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTAACACTCGAAACGGGCCGAC
Found at i:85944507 original size:48 final size:47
Alignment explanation
Indices: 85944389--85944560 Score: 176
Period size: 48 Copynumber: 3.7 Consensus size: 47
85944379 TCCATTAAGT
* * * *
85944389 CGATGCCATGTCCCAGACATGGTCTTACACTGACTA-TCGAAATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAAC-ACTCTACA-CG-TGC
*
85944438 CGACGCCATGTCCCAGACATGGTCTTACACTAACACCTCTACACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACA-CTCTACACGTGC
* *
85944486 CGATGCCATGTCCCAGACATGGTCTTACTCTTACACATCT-CA--TAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACAC-TCTACACGT-GC
*
85944532 CGATG-CATGTCCCAGACAT-ATCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
85944561 GGCTTTGTAA
Statistics
Matches: 109, Mismatches: 10, Indels: 13
0.83 0.08 0.10
Matches are distributed among these distances:
44 8 0.07
45 15 0.14
46 7 0.06
47 3 0.03
48 38 0.35
49 34 0.31
50 4 0.04
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAACACTCTACACGTGC
Found at i:85944824 original size:21 final size:21
Alignment explanation
Indices: 85944799--85944857 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
85944789 CTTGACATAG
*
85944799 GGGCACACACCCATGTGAAAA
1 GGGCACACGCCCATGTGAAAA
85944820 GGGCACACGCCCATGTGAAAA
1 GGGCACACGCCCATGTGAAAA
*
85944841 GGGCACACGCCTATGTG
1 GGGCACACGCCCATGTG
85944858 GCCAATTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.31, C:0.29, G:0.29, T:0.12
Consensus pattern (21 bp):
GGGCACACGCCCATGTGAAAA
Found at i:85946100 original size:46 final size:48
Alignment explanation
Indices: 85946050--85946140 Score: 114
Period size: 48 Copynumber: 1.9 Consensus size: 48
85946040 CATTGGCTTA
* * *
85946050 CGTCTCGAGGCCGATG-CATGTCGCAAACAT-GTCTTACACTAGCACT
1 CGTCTCAAGACCGATGCCATGTCCCAAACATGGTCTTACACTAGCACT
* * *
85946096 CGTCTTAATACCGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 CGTCTCAAGACCGATGCCATGTCCCAAACATGGTCTTACACTAGC
85946141 TCACACAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
46 12 0.32
47 12 0.32
48 13 0.35
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (48 bp):
CGTCTCAAGACCGATGCCATGTCCCAAACATGGTCTTACACTAGCACT
Found at i:85947261 original size:38 final size:38
Alignment explanation
Indices: 85947210--85947286 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
85947200 ACAAACGTTA
85947210 AAATTAGCTCACTAAATTTTTCATACACTAATATAAAT
1 AAATTAGCTCACTAAATTTTTCATACACTAATATAAAT
85947248 AAATTAGCTCACTAAATTTTTCATACACTAATATAAAT
1 AAATTAGCTCACTAAATTTTTCATACACTAATATAAAT
85947286 A
1 A
85947287 TGTTATGACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.36
Consensus pattern (38 bp):
AAATTAGCTCACTAAATTTTTCATACACTAATATAAAT
Found at i:85953370 original size:41 final size:41
Alignment explanation
Indices: 85953254--85953471 Score: 298
Period size: 41 Copynumber: 5.4 Consensus size: 41
85953244 CGTTTTACCA
* * * * *
85953254 AAAATGCCGCTAAAAA-TAGAGCAATAGAGGCGTTTTTGTT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGT
*
85953294 AAAACACCGCTAAAAA-TAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGT
* * *
85953334 AAAATGCCACTAAAAACTAAAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGT
*
85953375 AAAACGCCGCTAAAAACTAGAGCATTAGCAGCGCTTTTGGT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGT
* *
85953416 AAAACGCCGCTAAAAACTAGAGCAGTAGCGGCG-TTTTCGAT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTT-GGT
85953457 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
85953472 GTCATATAAT
Statistics
Matches: 159, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 51 0.32
41 108 0.68
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGT
Found at i:85954011 original size:14 final size:14
Alignment explanation
Indices: 85953994--85954043 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
85953984 GGATTTAGGT
85953994 GTTAGGGGTTATGG
1 GTTAGGGGTTATGG
85954008 GTTAGGGGTTATGG
1 GTTAGGGGTTATGG
* *
85954022 GTGAAGGGTTCATGG
1 GTTAGGGGTT-ATGG
*
85954037 TTTAGGG
1 GTTAGGG
85954044 CCTATGTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 22 0.73
15 8 0.27
ACGTcount: A:0.16, C:0.02, G:0.48, T:0.34
Consensus pattern (14 bp):
GTTAGGGGTTATGG
Found at i:85954030 original size:21 final size:21
Alignment explanation
Indices: 85953988--85954031 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
85953978 GGTTTAGGAT
* * *
85953988 TTAGGTGTTAGGGGTTATGGG
1 TTAGGGGTTAGGGGTGAAGGG
*
85954009 TTAGGGGTTATGGGTGAAGGG
1 TTAGGGGTTAGGGGTGAAGGG
85954030 TT
1 TT
85954032 CATGGTTTAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (21 bp):
TTAGGGGTTAGGGGTGAAGGG
Found at i:85954199 original size:7 final size:7
Alignment explanation
Indices: 85954189--85954221 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
85954179 TATTATTATA
85954189 GTTTAGG
1 GTTTAGG
85954196 GTTTAGG
1 GTTTAGG
85954203 GTTTAGG
1 GTTTAGG
85954210 GTTTAGG
1 GTTTAGG
85954217 GTTTA
1 GTTTA
85954222 AAGTGTATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.45
Consensus pattern (7 bp):
GTTTAGG
Found at i:85954263 original size:15 final size:15
Alignment explanation
Indices: 85954245--85954287 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
85954235 ATTATTTTAA
85954245 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
85954260 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
85954274 GATTTATGG-TTATG
1 GGTTTATGGATTATG
85954288 TAAGAGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 13 0.54
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.47
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:85954265 original size:22 final size:22
Alignment explanation
Indices: 85954240--85954282 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
85954230 GAGTTATTAT
*
85954240 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGATTAT-GATTTATGGG
*
85954262 TTTAGGGATTATGATTTATGG
1 TTTAAGGATTATGATTTATGG
85954283 TTATGTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGATTTATGGG
Found at i:85954893 original size:8 final size:8
Alignment explanation
Indices: 85954872--85954927 Score: 55
Period size: 7 Copynumber: 7.2 Consensus size: 8
85954862 AAAATATTCA
85954872 AAAAAATT
1 AAAAAATT
**
85954880 TTAAAATT
1 AAAAAATT
85954888 AAAAAA-T
1 AAAAAATT
85954895 AAAAAA-T
1 AAAAAATT
85954902 AAAAAA-T
1 AAAAAATT
85954909 AAAAAACTT
1 AAAAAA-TT
*
85954918 AAAAATTT
1 AAAAAATT
85954926 AA
1 AA
85954928 TATTTAATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
7 21 0.51
8 14 0.34
9 6 0.15
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (8 bp):
AAAAAATT
Found at i:85954898 original size:6 final size:7
Alignment explanation
Indices: 85954882--85954914 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
85954872 AAAAAATTTT
*
85954882 AAAATTA
1 AAAAATA
85954889 AAAAATA
1 AAAAATA
85954896 AAAAATA
1 AAAAATA
85954903 AAAAATA
1 AAAAATA
85954910 AAAAA
1 AAAAA
85954915 CTTAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAATA
Found at i:85956799 original size:138 final size:138
Alignment explanation
Indices: 85956551--85956822 Score: 474
Period size: 138 Copynumber: 2.0 Consensus size: 138
85956541 TAATAATGTA
* * *
85956551 TGGATGCTTTGTGGAGTCCCTGTTTTGAATTTTAGAATCATATGTAATCTCTTTAAAAATTGGCA
1 TGGATGCTTTGTGGAGTACCTGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCA
85956616 TTAAATTGTTTTTAGGTTTTATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGAT
66 TTAAATTGTTTTTAGGTTTTATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGAT
85956681 TTAACGTC
131 TTAACGTC
* *
85956689 TGGATGCTTT-TAGGAGTACTTGTTTTGAATTTTAGAACCATATGTAATTTCCTTAAAAATTGGC
1 TGGATGCTTTGT-GGAGTACCTGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGC
*
85956753 ATTAAATTGTTTTTAGGTTTTATATTAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGA
65 ATTAAATTGTTTTTAGGTTTTATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGA
85956818 TTTAA
130 TTTAA
85956823 AATTTTAAAA
Statistics
Matches: 127, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
137 1 0.01
138 126 0.99
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.49
Consensus pattern (138 bp):
TGGATGCTTTGTGGAGTACCTGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCA
TTAAATTGTTTTTAGGTTTTATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGAT
TTAACGTC
Found at i:85957928 original size:43 final size:43
Alignment explanation
Indices: 85957862--85958091 Score: 363
Period size: 43 Copynumber: 5.4 Consensus size: 43
85957852 AAATTTCATT
* ***
85957862 ACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTAAAG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
*
85957905 ACCTCTAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
85957948 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
*
85957991 ACCTCTACCGGCGTTTGTGGG-AAAGCGCCGCTAAAGGTCTTG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
* * *
85958033 ACCTCTAGCGGTGTTTATGGGAAAAGCGCCGCTAAAGGTCATG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
*
85958076 ACCTTTAGCGGCGTTT
1 ACCTCTAGCGGCGTTT
85958092 TTTTAAATAA
Statistics
Matches: 173, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
42 39 0.23
43 134 0.77
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.24
Consensus pattern (43 bp):
ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
Found at i:85958070 original size:85 final size:86
Alignment explanation
Indices: 85957862--85958091 Score: 372
Period size: 85 Copynumber: 2.7 Consensus size: 86
85957852 AAATTTCATT
* * * *
85957862 ACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTAAAGACCTCTAGCGGCATTTGTGGGA
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTCTAGCGGCGTTTGTGGGA
85957927 AAAGCGCCGCTAAAGGTCTTG
66 AAAGCGCCGCTAAAGGTCTTG
* *
85957948 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGACCTCTACCGGCGTTTGTGGG-
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTCTAGCGGCGTTTGTGGGA
85958012 AAAGCGCCGCTAAAGGTCTTG
66 AAAGCGCCGCTAAAGGTCTTG
* * *
85958033 ACCTCTAGCGGTGTTTATGGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTT
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTCTAGCGGCGTTT
85958092 TTTTAAATAA
Statistics
Matches: 133, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
85 75 0.56
86 58 0.44
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.24
Consensus pattern (86 bp):
ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTCTAGCGGCGTTTGTGGGA
AAAGCGCCGCTAAAGGTCTTG
Found at i:85960985 original size:27 final size:27
Alignment explanation
Indices: 85960909--85961124 Score: 229
Period size: 27 Copynumber: 8.0 Consensus size: 27
85960899 AAACATACAT
* * * *
85960909 CACATAGGGGCATATCAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
85960936 CATATAAGGGC-AAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * **
85960962 CTCATAAGGGGAAAACAACCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
85960989 CACATAAAGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
85961016 CACATAAGGG-AAAATCAGTCATTTTAC
1 CACATAAGGGCAAAA-CAGTCATTTTAC
** * *
85961043 CTTATAAGGGTAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
85961070 CACATATGGGCAAAACTGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
85961097 CACACATGGGCAAATCAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
85961124 C
1 C
85961125 GATTAGGGGC
Statistics
Matches: 156, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
26 24 0.15
27 128 0.82
28 4 0.03
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:85961066 original size:81 final size:82
Alignment explanation
Indices: 85960925--85961124 Score: 271
Period size: 81 Copynumber: 2.5 Consensus size: 82
85960915 GGGGCATATC
* *
85960925 AGTCATCTTACCATATAAGGGCAAA-CAGTCATTTTACCTCATAAGGGGAAAACAACCATTTTAC
1 AGTCATTTTACCACATAAGGGCAAATCAGTCATTTTACCTCATAAGGGGAAAACAACCATTTTAC
85960989 CACATAAAGGCAAAA-T
66 CACATAAAGGCAAAACT
* * * * **
85961005 AGTCATTTTACCACATAAGGGAAAATCAGTCATTTTACCTTATAAGGGTAAAATAGTCATTTTAC
1 AGTCATTTTACCACATAAGGGCAAATCAGTCATTTTACCTCATAAGGGGAAAACAACCATTTTAC
**
85961070 CACATATGGGCAAAACT
66 CACATAAAGGCAAAACT
* *
85961087 -GTCATTTTACCACACATGGGCAAATCAGTCATTTTACC
1 AGTCATTTTACCACATAAGGGCAAATCAGTCATTTTACC
85961125 GATTAGGGGC
Statistics
Matches: 105, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
80 22 0.21
81 82 0.78
82 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (82 bp):
AGTCATTTTACCACATAAGGGCAAATCAGTCATTTTACCTCATAAGGGGAAAACAACCATTTTAC
CACATAAAGGCAAAACT
Found at i:85965930 original size:22 final size:22
Alignment explanation
Indices: 85965905--85965946 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
85965895 ATATAAAATT
*
85965905 ATATTTAATAAATCATTTTAAA
1 ATATTTAATAAATAATTTTAAA
* *
85965927 ATATTTCATTAATAATTTTA
1 ATATTTAATAAATAATTTTA
85965947 GTTTTAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
ATATTTAATAAATAATTTTAAA
Found at i:85967522 original size:28 final size:27
Alignment explanation
Indices: 85967489--85967544 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
85967479 TTAGAATACT
*
85967489 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-CTAAAAATACCGAAATACCC
* *
85967517 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTCTAAAAATACCGAAATACCC
85967544 T
1 T
85967545 CGATTTGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACCC
Found at i:85967528 original size:27 final size:28
Alignment explanation
Indices: 85967498--85967587 Score: 96
Period size: 27 Copynumber: 3.3 Consensus size: 28
85967488 TTTAGTTTAC
85967498 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
85967525 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * * *
85967552 TAAATTTACCAAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
85967579 TAAAATTAC
1 TAAAATTAC
85967588 TAAAGTACCC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.08
27 48 0.92
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:85967567 original size:54 final size:54
Alignment explanation
Indices: 85967498--85967604 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
85967488 TTTAGTTTAC
* * *
85967498 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGATTTG
1 TAAAATTACCAAAATA-CCTTAGACTTGTAAAAATACT-AAAGTACCCCCGATTTG
* * *
85967552 TAAATTTACCAAAATACCTTCGACTTGTAAAATTACTAAAGTACCCCCGATTT
1 TAAAATTACCAAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTT
85967605 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (54 bp):
TAAAATTACCAAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTTG
Found at i:85967596 original size:27 final size:26
Alignment explanation
Indices: 85967522--85967597 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
85967512 TACCCTTAGT
* *
85967522 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACT-AAATACCCTCGAC
* * *
85967549 TTGTAAATTTACCAAAATACCTTCGAC
1 TTGTAAAATTA-CTAAATACCCTCGAC
85967576 TTGTAAAATTACTAAAGTACCC
1 TTGTAAAATTACTAAA-TACCC
85967598 CCGATTTACA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.10
27 34 0.87
28 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACTAAATACCCTCGAC
Found at i:85967623 original size:27 final size:27
Alignment explanation
Indices: 85967593--85967776 Score: 228
Period size: 27 Copynumber: 6.8 Consensus size: 27
85967583 ATTACTAAAG
*
85967593 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
85967620 TACCC-CTAATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
85967647 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
85967674 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
85967701 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
85967728 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
85967755 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
85967777 TAAAATACCC
Statistics
Matches: 141, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 139 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:85967786 original size:54 final size:54
Alignment explanation
Indices: 85967674--85967789 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
85967664 ATTATCGTTT
* * * ****
85967674 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAA
**
85967728 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAA
85967782 TACCCTTG
1 TACCCTTG
85967790 GTTTGTGAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:85967813 original size:81 final size:81
Alignment explanation
Indices: 85967647--85967814 Score: 178
Period size: 81 Copynumber: 2.1 Consensus size: 81
85967637 ATTATCGTTT
* * * ***
85967647 TACCCCTGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* ***
85967712 TATAGAATTACTGTTT
66 TATAGAATTACCGCAA
* * *
85967728 TACCCTTGATTTACAGAATTA-CTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGT
1 TACCCTTGATTTACAGAATTATC-GTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGAT
*
85967792 TTGT-GAAATTACCGCAA
65 TTATAG-AATTACCGCAA
85967809 TACCCT
1 TACCCT
85967815 CAATTTGTAA
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 2 0.03
81 69 0.97
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.39
Consensus pattern (81 bp):
TACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TATAGAATTACCGCAA
Found at i:85969045 original size:25 final size:25
Alignment explanation
Indices: 85969016--85969063 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
85969006 TTATAATATG
* * *
85969016 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
85969041 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
85969064 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:85969132 original size:20 final size:20
Alignment explanation
Indices: 85969107--85969165 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
85969097 TAAATATGGT
85969107 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
85969127 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
85969147 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
85969166 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:85969243 original size:24 final size:24
Alignment explanation
Indices: 85969216--85969358 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
85969206 GAGGAAGTGA
85969216 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
85969240 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
85969264 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
85969287 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
85969311 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
85969335 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85969359 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:85969309 original size:47 final size:47
Alignment explanation
Indices: 85969216--85969358 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
85969206 GAGGAAGTGA
85969216 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
85969264 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
85969311 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
85969359 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:85969332 original size:71 final size:72
Alignment explanation
Indices: 85969216--85969359 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
85969206 GAGGAAGTGA
*
85969216 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
85969279 CCAGTTAT
65 CCAGTTAT
** * *
85969287 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
85969352 CAGTTAT
66 CAGTTAT
85969359 A
1 A
85969360 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:85969585 original size:31 final size:31
Alignment explanation
Indices: 85969550--85969644 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
85969540 CGTTTACAGT
85969550 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
85969581 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
85969612 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
85969643 AA
1 AA
85969645 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:85971730 original size:10 final size:9
Alignment explanation
Indices: 85971690--85971750 Score: 63
Period size: 9 Copynumber: 6.8 Consensus size: 9
85971680 ATTTTTTTGA
85971690 ATTTTTACAT
1 ATTTTTA-AT
*
85971700 A-TTATAAT
1 ATTTTTAAT
*
85971708 -TTTATAAT
1 ATTTTTAAT
85971716 ATTTTTAAT
1 ATTTTTAAT
85971725 ATTTTTAAT
1 ATTTTTAAT
*
85971734 AATTTTATAT
1 ATTTTTA-AT
85971744 ATTTTTA
1 ATTTTTA
85971751 GTTTTTTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
8 9 0.20
9 26 0.59
10 9 0.20
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:85971758 original size:19 final size:19
Alignment explanation
Indices: 85971701--85971761 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
85971691 TTTTTACATA
85971701 TTATA-ATTTTATAATATTT
1 TTATATATTTT-TAATATTT
*
85971720 TTA-ATATTTTTAATAATT
1 TTATATATTTTTAATATTT
* *
85971738 TTATATATTTTTAGTTTTT
1 TTATATATTTTTAATATTT
85971757 TTATA
1 TTATA
85971762 GTTTTACAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 11 0.31
19 25 0.69
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TTATATATTTTTAATATTT
Found at i:85975610 original size:47 final size:47
Alignment explanation
Indices: 85975539--85975788 Score: 401
Period size: 47 Copynumber: 5.3 Consensus size: 47
85975529 CCCTTTGGGA
* * * * * *
85975539 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
85975586 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85975633 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85975680 CTTATCACATATATACACTTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85975727 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85975774 CTTATCACATATATA
1 CTTATCACATATATA
85975789 TATATCTCAT
Statistics
Matches: 191, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 191 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:85975617 original size:25 final size:25
Alignment explanation
Indices: 85975589--85975667 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
85975579 ACTCGGCCCT
85975589 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
85975614 ATCACAT-T-GGC-CATTCGGC-TTT
1 ATCACATATATACACTTTC-ACATTC
85975636 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
85975661 ATCACAT
1 ATCACAT
85975668 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 13 0.33
23 3 0.08
24 3 0.08
25 20 0.51
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:85978826 original size:39 final size:39
Alignment explanation
Indices: 85978742--85978873 Score: 144
Period size: 39 Copynumber: 3.4 Consensus size: 39
85978732 ATTCACTTTT
* ** * * *
85978742 AAGCATATATCACATTACACATAT-A-TACATAACATTT
1 AAGCATATATCACAATAGTCATATAACCACAGAACATTC
*
85978779 AAGCATATATCACAAT-GTGTATATAACCACAGAACATTC
1 AAGCATATATCACAATAGT-CATATAACCACAGAACATTC
* *
85978818 AAGCATATATCACAATAGTCATATAATCACATAACATTC
1 AAGCATATATCACAATAGTCATATAACCACAGAACATTC
*
85978857 AATCATATATCACAATA
1 AAGCATATATCACAATA
85978874 CTCAAAAACA
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
37 19 0.24
38 1 0.01
39 58 0.73
40 2 0.03
ACGTcount: A:0.46, C:0.20, G:0.05, T:0.29
Consensus pattern (39 bp):
AAGCATATATCACAATAGTCATATAACCACAGAACATTC
Found at i:85990375 original size:27 final size:27
Alignment explanation
Indices: 85990336--85990454 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
85990326 TGGATAAGTT
85990336 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
85990363 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
85990390 GTAGAAATACCGAAATACCCCTGTACG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
85990417 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
85990444 GTAAAATTACC
1 GTAGAATTACC
85990455 ATTTTTCCCC
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:85997887 original size:27 final size:27
Alignment explanation
Indices: 85997849--85997966 Score: 137
Period size: 27 Copynumber: 4.4 Consensus size: 27
85997839 AGATAAGTTG
85997849 TAGAATTACCGAAATACCCCTGTAGGA
1 TAGAATTACCGAAATACCCCTGTAGGA
* ** *
85997876 TAGAATTACCGAAATAACTTTGTAAGA
1 TAGAATTACCGAAATACCCCTGTAGGA
* *
85997903 TAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGA
* * * *
85997930 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAGGA
*
85997957 TAAAATTACC
1 TAGAATTACC
85997967 ATTTTGCCCT
Statistics
Matches: 76, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGA
Found at i:85998658 original size:26 final size:26
Alignment explanation
Indices: 85998611--85998661 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
85998601 CTCGCTGCAA
*
85998611 TCTGGTGGCTCGCCACATATATCTGT
1 TCTGGTGACTCGCCACATATATCTGT
*
85998637 TCTGGTGACTTCGTCACA-ATATCTG
1 TCTGGTGAC-TCGCCACATATATCTG
85998662 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (26 bp):
TCTGGTGACTCGCCACATATATCTGT
Found at i:85998758 original size:27 final size:26
Alignment explanation
Indices: 85998706--85998765 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
85998696 ATATATATAT
*
85998706 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
85998732 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
85998759 ATATCTG
1 ATATCTG
85998766 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:86012171 original size:22 final size:22
Alignment explanation
Indices: 86012146--86012189 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
86012136 ACAAGGCTAA
86012146 TTTGCCACCCCAACTTCAATGT
1 TTTGCCACCCCAACTTCAATGT
*
86012168 TTTGCCATCCCAACTTCAATGT
1 TTTGCCACCCCAACTTCAATGT
86012190 ACCTACACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.34, G:0.09, T:0.34
Consensus pattern (22 bp):
TTTGCCACCCCAACTTCAATGT
Found at i:86013945 original size:18 final size:18
Alignment explanation
Indices: 86013919--86013953 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86013909 GTACTAGAGG
*
86013919 CAAAGATCACAAAAAACA
1 CAAAAATCACAAAAAACA
*
86013937 CAAAAATCACTAAAAAC
1 CAAAAATCACAAAAAAC
86013954 CAAGCTCAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.23, G:0.03, T:0.09
Consensus pattern (18 bp):
CAAAAATCACAAAAAACA
Found at i:86015916 original size:47 final size:47
Alignment explanation
Indices: 86015845--86016155 Score: 487
Period size: 47 Copynumber: 6.6 Consensus size: 47
86015835 CCCTTCGGGA
* * * * * *
86015845 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
86015892 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
86015939 TTTAGCACATAAATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86015986 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGG
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86016033 CTTATCACATATATACACTTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86016080 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86016127 CTTATCACATATATACACTTCCACATTCA
1 CTTATCACATATATACACTTTCACATTCA
86016156 AATGACAAAA
Statistics
Matches: 245, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 245 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86017705 original size:40 final size:40
Alignment explanation
Indices: 86017649--86018000 Score: 569
Period size: 40 Copynumber: 8.8 Consensus size: 40
86017639 CCGGCATGAT
* * * *
86017649 TGCTCTTCGGGACTTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
86017689 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86017729 TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
86017769 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86017809 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
86017849 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86017889 TTCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
86017929 TGCTCTTCGGGTTTTAGCCCGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86017969 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
86018001 CTCAATTTTT
Statistics
Matches: 291, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 291 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:86019499 original size:47 final size:47
Alignment explanation
Indices: 86019428--86019791 Score: 602
Period size: 47 Copynumber: 7.7 Consensus size: 47
86019418 CCCTTCGGGA
* * * * * *
86019428 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
86019475 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86019522 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86019569 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86019616 CTTATCACATATATACACTTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86019663 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86019710 CTTATCACATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86019757 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
86019792 TCCAATGAAT
Statistics
Matches: 299, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 299 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86019506 original size:25 final size:25
Alignment explanation
Indices: 86019478--86019556 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
86019468 ACTCGGCCCT
86019478 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * *
86019503 ATCACAT-T-GGC-CATTCGAC-TTT
1 ATCACATATATACACTTTC-ACATTC
86019525 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
86019550 ATCACAT
1 ATCACAT
86019557 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 13 0.32
23 4 0.10
24 4 0.10
25 20 0.49
ACGTcount: A:0.33, C:0.28, G:0.04, T:0.35
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:86021635 original size:2 final size:2
Alignment explanation
Indices: 86021628--86021661 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
86021618 ACATTCGGCA
86021628 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86021662 GTTAATGACG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86030783 original size:37 final size:37
Alignment explanation
Indices: 86030724--86030832 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
86030714 AGCTCAGACG
** * * *
86030724 AAATCTCCACACAAAGTTATCGGGTCTCACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
86030761 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86030798 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
86030833 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:86030948 original size:48 final size:48
Alignment explanation
Indices: 86030877--86031310 Score: 688
Period size: 48 Copynumber: 9.0 Consensus size: 48
86030867 TGTTACAACA
* * * *
86030877 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
86030925 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
86030973 TTCCCATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
86031021 TTCATATTAGCTATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
86031069 TTCATATTAGCTATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
86031117 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
86031165 TTCACTTTGGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
**
86031213 TTCACATTAGCCGCTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
86031261 TTCATATTAGCTATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
86031309 TT
1 TT
86031311 ATTTATCTTG
Statistics
Matches: 357, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 357 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:86034067 original size:14 final size:14
Alignment explanation
Indices: 86034048--86034078 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
86034038 GATAAAAGGT
86034048 TTTTTTTTTTTTGC
1 TTTTTTTTTTTTGC
86034062 TTTTTTTTTTTTGC
1 TTTTTTTTTTTTGC
86034076 TTT
1 TTT
86034079 GAGCAATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.87
Consensus pattern (14 bp):
TTTTTTTTTTTTGC
Found at i:86034761 original size:22 final size:22
Alignment explanation
Indices: 86034735--86034776 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
86034725 ATTGCAGCCT
* *
86034735 TTAAATAGTATATAAAATTAGC
1 TTAAATAGTAAAAAAAATTAGC
86034757 TTAAATAGTAAAAAAAATTA
1 TTAAATAGTAAAAAAAATTA
86034777 ATCTGAATCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (22 bp):
TTAAATAGTAAAAAAAATTAGC
Found at i:86036198 original size:59 final size:59
Alignment explanation
Indices: 86036135--86036246 Score: 136
Period size: 59 Copynumber: 1.9 Consensus size: 59
86036125 ACTTAATCAA
* * * * *
86036135 ATAA-TTCTGTTTCAAGATTTATTCTCGTCATTTAACAGAATTTATTTTGATTTACTTAC
1 ATAATTTC-GTTTCAAGATTTAATATCGTCATTTAACAAAATTGACTTTGATTTACTTAC
* * *
86036194 ATAATTTCGTTTCGAGTTTTAATATTGTCATTTAACAAAATTGACTTTGATTT
1 ATAATTTCGTTTCAAGATTTAATATCGTCATTTAACAAAATTGACTTTGATTT
86036247 TGTTTCAGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
59 41 0.93
60 3 0.07
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.49
Consensus pattern (59 bp):
ATAATTTCGTTTCAAGATTTAATATCGTCATTTAACAAAATTGACTTTGATTTACTTAC
Found at i:86036931 original size:473 final size:467
Alignment explanation
Indices: 86036029--86037485 Score: 1920
Period size: 473 Copynumber: 3.1 Consensus size: 467
86036019 GAAATGTTTA
* * *
86036029 AAGGACATTTATCGTAAATTAAATAAAATATGTTTCGGGATTTATTTTAGCCGTTTAATAAGATT
1 AAGGACATTTATCTTAAATTAAATAAAATATGTTTCGGGATTTATTCT-GCCGTTTAACAAGATT
* * * * * *
86036094 TTATTCAATATTTACTTGTTTCCAAACAAAGACTTAATCAAATAATTCTGTTTCAAGATTTATTC
65 TTTTTCGATATTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTCTGTTTCAGGATTTATTC
* * * * *
86036159 TCGTCATTTAACAGAATTTATTTTGATTTACTTACATAATTTCGTTTCGAGTTTTAATATTGTCA
130 TCCT-ATTTAACAGAATTTATTTTGATTTAATTACATAATTTTGTTTCGAGATTTAATCTTGTCA
* * *
86036224 TTTAACAAAATTGACTTTGATTTTGTTTCAGAATTTTAA-CAAAATTTTGCCGTTTAACAAAATC
194 TTTAACAAAATTGATTTTGATTTTGTTTCAGAATTTTAATC---CTGTT---GTTTAACAAAATC
* * * * * * *
86036288 AAAGGGAGATTTTCTGTTTATTTTTTTTTGTCTAAATATGGCTTGAAAGTGTGAATTAAAAAAAA
253 AAAGGGAAATTTTCTATTT-TTTTTTTTTGCCTAATTGTGGCTTGAAATTGTGAATTAAAAAGAA
** * *
86036353 AAATATCAATGGTGAATTAAAAAGAAAATATGAGAATGCATGTCTAGCATTGGTTCTTTGAAAGA
317 ATTTATCAAT-GTGAATTAAAAAGACAATATGAGAATGCATGTCTAGAATTGGTTCTTTGAAAGA
* *
86036418 CTTGGTATTTAAGCGTGCTTAGTGCACCACCTCATATTTCAG-CACACATGAAATTATTTTTCCT
381 CTTGGTATTTAAGCGTGCCTAGTGCACCACCTCATATTTCAGCCA-ACACGAAATTATTTTTCCT
* *
86036482 TAGTAGGCATAATCTATTTATAT
445 TAGCAGACATAATCTATTTATAT
* *
86036505 AAGGACATTTATATTAAATTAAATAAAATATGTTTCGGGATTTATTACTGCCATTTAACAAGATT
1 AAGGACATTTATCTTAAATTAAATAAAATATGTTTCGGGATTTATT-CTGCCGTTTAACAAGA-T
* ** *
86036570 TTTTTTCGATATTGATTTGTTTCTAAGTGAAGGCTTAATCAAATAATTCTGTTTCAGGATTTATT
64 TTTTTTCGATATTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTCTGTTTCAGGATTTATT
* * * *
86036635 CTCACTGTTTAACAGAATTTACTTTGATTTAATTACATAATTTTGTTTCAAGATTTAATCCTGTC
129 CTC-CTATTTAACAGAATTTATTTTGATTTAATTACATAATTTTGTTTCGAGATTTAATCTTGTC
* * *
86036700 GTTTAACAAAATTGTTTTTGATTTTGTTTTAGAATTTTAATCCTGTTGTTTAACAAAATCAAAGG
193 ATTTAACAAAATTGATTTTGATTTTGTTTCAGAATTTTAATCCTGTTGTTTAACAAAATCAAAGG
*
86036765 GAAATTTTCTATTTTTTATTTTTTTGCCTAATTGTGGCTTGAAATTGTTAATTAAAAAGAAATTT
258 GAAATTTTCTA-TTTTT-TTTTTTTGCCTAATTGTGGCTTGAAATTGTGAATTAAAAAGAAATTT
* * *
86036830 ATTAATAGTGAATTAAAAGGACAATATGAGAATGCATGTCTAAAATTGGTTCTTTGAAAGACTTG
321 ATCAAT-GTGAATTAAAAAGACAATATGAGAATGCATGTCTAGAATTGGTTCTTTGAAAGACTTG
*
86036895 GTATTTAAGCATGCCTAGTGCACCACCTCATATTTCAGTCCAACACGAAATTATTTTTCCTTAGC
385 GTATTTAAGCGTGCCTAGTGCACCACCTCATATTTCAG-CCAACACGAAATTATTTTTCCTTAGC
*
86036960 AGACATAATCTATTTAAAT
449 AGACATAATCTATTTATAT
* * * *
86036979 AATGACATTTATCTTAAATTAAATAAAATCTATTTCGGGATTTATTGCTGCCGTTTAACAAGAAT
1 AAGGACATTTATCTTAAATTAAATAAAATATGTTTCGGGATTTATT-CTGCCGTTTAACAAGATT
* * * *
86037044 TTTTTCGATATTGATTTGTTTCGAAACGAAGACTTAATCAAATAATTATATTTCAGAATTTATTC
65 TTTTTCGATATTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTCTGTTTCAGGATTTATTC
* * *
86037109 -CGGCCATTTAATAGAATTTATTTTGATTTAATTACATAATTTTGTTTCGAGATTTAATCTTGCC
130 TC--CTATTTAACAGAATTTATTTTGATTTAATTACATAATTTTGTTTCGAGATTTAATCTTGTC
* *
86037173 ATTTAACAAAATTGATTTTGATTTTGTTTCAGAATTTTAATTCTGTCGTTTAACAAAATCAAA-G
193 ATTTAACAAAATTGATTTTGATTTTGTTTCAGAATTTTAATCCTGTTGTTTAACAAAATCAAAGG
*
86037237 GTAA------A----TTTTTTTT-CCTAATTGTGGCTTGAAATTGTGAATTAAAAAGAAATTTAT
258 GAAATTTTCTATTTTTTTTTTTTGCCTAATTGTGGCTTGAAATTGTGAATTAAAAAGAAATTTAT
* *
86037291 CAATGATGAATTAAAAAGACAATATGAGAATGCATGTCTAGGATTGGTTCTTTGAAAGACTTGTT
323 CAATG-TGAATTAAAAAGACAATATGAGAATGCATGTCTAGAATTGGTTCTTTGAAAGACTTGGT
86037356 ATTTAAGCGTG-CTGAGTGCACCACCTCATATTTCAGCCTAACACGAAATTATTTTTCCTTAGCA
387 ATTTAAGCGTGCCT-AGTGCACCACCTCATATTTCAGCC-AACACGAAATTATTTTTCCTTAGCA
* *
86037420 AACATAGTCTATTTATAT
450 GACATAATCTATTTATAT
* * * **
86037438 AAGAACATTTATTTTAAATTAAATAAAATCTGTTTTAGGATTTATTCT
1 AAGGACATTTATCTTAAATTAAATAAAATATGTTTCGGGATTTATTCT
86037486 CATCGTTTAA
Statistics
Matches: 873, Mismatches: 96, Indels: 42
0.86 0.09 0.04
Matches are distributed among these distances:
458 7 0.01
459 210 0.24
460 7 0.01
461 1 0.00
466 1 0.00
472 34 0.04
473 308 0.35
474 95 0.11
475 5 0.01
476 56 0.06
477 147 0.17
478 2 0.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (467 bp):
AAGGACATTTATCTTAAATTAAATAAAATATGTTTCGGGATTTATTCTGCCGTTTAACAAGATTT
TTTTCGATATTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTCTGTTTCAGGATTTATTCT
CCTATTTAACAGAATTTATTTTGATTTAATTACATAATTTTGTTTCGAGATTTAATCTTGTCATT
TAACAAAATTGATTTTGATTTTGTTTCAGAATTTTAATCCTGTTGTTTAACAAAATCAAAGGGAA
ATTTTCTATTTTTTTTTTTTGCCTAATTGTGGCTTGAAATTGTGAATTAAAAAGAAATTTATCAA
TGTGAATTAAAAAGACAATATGAGAATGCATGTCTAGAATTGGTTCTTTGAAAGACTTGGTATTT
AAGCGTGCCTAGTGCACCACCTCATATTTCAGCCAACACGAAATTATTTTTCCTTAGCAGACATA
ATCTATTTATAT
Found at i:86043408 original size:40 final size:40
Alignment explanation
Indices: 86043349--86043535 Score: 259
Period size: 40 Copynumber: 4.7 Consensus size: 40
86043339 TGAATGATAC
* * * * *
86043349 CCGGGCTAAGCCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
86043389 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
86043429 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
86043469 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
86043509 CCGGGTTAAGACCCGAAGGCAATTGTG
1 CCGGGTTAAGACCCGAAGGCATTTGTG
86043536 TTGTGGTTAT
Statistics
Matches: 132, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
40 130 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:86043482 original size:80 final size:80
Alignment explanation
Indices: 86043345--86043535 Score: 285
Period size: 80 Copynumber: 2.4 Consensus size: 80
86043335 CAATTGAATG
* * * * * *
86043345 ATACCCGGGCTAAGCCCCAAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
*
86043410 TTTGTGCGAGTTGCT
66 TTTGTACGAGTTGCT
*
86043425 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
86043489 ATTTGTACGAGTTGCT
65 ATTTGTACGAGTTGCT
*
86043505 ATACCCGGGTTAAGACCCGAAGGCAATTGTG
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTG
86043536 TTGTGGTTAT
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 98 0.98
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTGTACGAGTTGCT
Done.