Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 277 of 433
Found at i:86051524 original size:40 final size:40
Alignment explanation
Indices: 86051469--86051671 Score: 273
Period size: 40 Copynumber: 5.1 Consensus size: 40
86051459 TGAATGATAC
* * * *
86051469 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
86051509 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
86051549 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
86051589 CCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
86051629 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
86051669 CCG
1 CCG
86051672 AAGGTAAAGG
Statistics
Matches: 144, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 142 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:86051602 original size:80 final size:80
Alignment explanation
Indices: 86051465--86051672 Score: 310
Period size: 80 Copynumber: 2.6 Consensus size: 80
86051455 CAATTGAATG
* * * * *
86051465 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGAGCTAAGACCCGAAGGC
86051529 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
86051545 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGAGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGAGCTAAGACCCGAAGGCA
86051610 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
86051625 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGA
86051673 AGGTAAAGGT
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 113 0.98
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGAGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:86054842 original size:28 final size:28
Alignment explanation
Indices: 86054788--86054857 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
86054778 TATGGTACTC
* **
86054788 AGTGTACGAAATATTGAGAATGGCACTT
1 AGTGTGCGAAATATTGAGAATAACACTT
* *
86054816 GGTGTGCGAGATATTGAGAATAACACTT
1 AGTGTGCGAAATATTGAGAATAACACTT
*
86054844 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
86054858 CGAATGATTC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATAACACTT
Found at i:86061795 original size:43 final size:42
Alignment explanation
Indices: 86061748--86061842 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
86061738 AGACGTAGTA
* *
86061748 TTACATGTAATCAAATATTGATGCC-ACTATCGCAGACAGGGTC
1 TTACACGTAATCAAATA-TGATGCCGA-TATCCCAGACAGGGTC
** * *
86061791 TTACACAAAATCAAATATGATGCCGATGTCCCAGACATGGTC
1 TTACACGTAATCAAATATGATGCCGATATCCCAGACAGGGTC
86061833 TTACACGTAA
1 TTACACGTAA
86061843 ATCATAAGTC
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
42 28 0.65
43 15 0.35
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (42 bp):
TTACACGTAATCAAATATGATGCCGATATCCCAGACAGGGTC
Found at i:86061826 original size:42 final size:42
Alignment explanation
Indices: 86061756--86061886 Score: 115
Period size: 44 Copynumber: 3.0 Consensus size: 42
86061746 TATTACATGT
* *
86061756 AATCAAATATTGATGCCACTATCGCAGACAGGGTCTTACAC-AA
1 AATCAAATA-TGATGCCA-TGTCCCAGACAGGGTCTTACACGAA
* *
86061799 AATCAAATATGATGCCGATGTCCCAGACATGGTCTTACACGTA
1 AATCAAATATGATGCC-ATGTCCCAGACAGGGTCTTACACGAA
* * *
86061842 AATCATAAGT-CGATGCCAACGTCCCAGAC-GTGGTCTTACATGAA
1 AATCA-AA-TATGATGCC-ATGTCCCAGACAG-GGTCTTACACGAA
86061886 A
1 A
86061887 TCACATTTCG
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
42 26 0.36
43 16 0.22
44 30 0.41
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (42 bp):
AATCAAATATGATGCCATGTCCCAGACAGGGTCTTACACGAA
Found at i:86061869 original size:44 final size:42
Alignment explanation
Indices: 86061780--86061889 Score: 123
Period size: 44 Copynumber: 2.6 Consensus size: 42
86061770 GCCACTATCG
* * * * *
86061780 CAGACAGGGTCTTACACAAAATCAAATATGATGCCGATGTCC
1 CAGACATGGTCTTACACGAAATCAAATACGATGCCAACGTCC
86061822 CAGACATGGTCTTACACGTAAATCATAAGT-CGATGCCAACGTCC
1 CAGACATGGTCTTACACG-AAATCA-AA-TACGATGCCAACGTCC
* *
86061866 CAGACGTGGTCTTACATGAAATCA
1 CAGACATGGTCTTACACGAAATCA
86061890 CATTTCGAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 16 0.28
43 12 0.21
44 29 0.50
45 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.23
Consensus pattern (42 bp):
CAGACATGGTCTTACACGAAATCAAATACGATGCCAACGTCC
Found at i:86062272 original size:8 final size:8
Alignment explanation
Indices: 86062259--86062283 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
86062249 AAATTAGTCC
86062259 TCACATTT
1 TCACATTT
86062267 TCACATTT
1 TCACATTT
86062275 TCACATTT
1 TCACATTT
86062283 T
1 T
86062284 AGTCCCTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:86065791 original size:30 final size:30
Alignment explanation
Indices: 86065752--86065810 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
86065742 GGAGGTGGGA
*
86065752 TGGGAAGGGAGTAAAAGTTTTAGGAGGAAAG
1 TGGGAAGGGAGTAAAAATTTTAGG-GGAAAG
*
86065783 TGGG-AGGGAGTAAAAATTTTTGGGGAAA
1 TGGGAAGGGAGTAAAAATTTTAGGGGAAA
86065811 ATAAAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 5 0.19
30 17 0.65
31 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.41, T:0.22
Consensus pattern (30 bp):
TGGGAAGGGAGTAAAAATTTTAGGGGAAAG
Found at i:86065975 original size:30 final size:31
Alignment explanation
Indices: 86065914--86065975 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 31
86065904 GGGGTTAGGA
* * **
86065914 TGGGAGGGAAGTAAAAGTTTTGGGGGGAAAG
1 TGGGAAGGAAGTAAAAGTTTTGAGGAAAAAG
*
86065945 TGGGAAGG-AGTAAAAGTTTTTAGGAAAAAG
1 TGGGAAGGAAGTAAAAGTTTTGAGGAAAAAG
86065975 T
1 T
86065976 AAAAAAGTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.37, C:0.00, G:0.40, T:0.23
Consensus pattern (31 bp):
TGGGAAGGAAGTAAAAGTTTTGAGGAAAAAG
Found at i:86069135 original size:45 final size:45
Alignment explanation
Indices: 86069046--86069166 Score: 178
Period size: 45 Copynumber: 2.7 Consensus size: 45
86069036 CCGAATTCAT
* *
86069046 TCACCGGCATT-TCA-CCTGCTAGGCTC-GAGGCTTGAATAATATC
1 TCACCGGCATTAT-AGCCTGCTAGGCTCAAAGGCTCGAATAATATC
86069089 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGAC-CGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGG-CTCGAATAATATC
86069134 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGC
86069167 CCAAATAGTA
Statistics
Matches: 72, Mismatches: 2, Indels: 7
0.89 0.02 0.09
Matches are distributed among these distances:
43 12 0.17
44 14 0.19
45 45 0.62
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAATATC
Found at i:86069776 original size:2 final size:2
Alignment explanation
Indices: 86069769--86069796 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
86069759 TTATGACCGA
86069769 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86069797 TAAACAAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86074403 original size:40 final size:39
Alignment explanation
Indices: 86074277--86074405 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
86074267 ATGCTGGAAA
* *
86074277 TTATATCCGGG-TTAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
86074316 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
86074356 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
86074396 TTATATCCGG
1 TTATATCCGG
86074406 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 13 0.17
40 63 0.83
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:86078597 original size:40 final size:40
Alignment explanation
Indices: 86078552--86078718 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
86078542 CGGAATATAA
86078552 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86078592 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
86078632 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86078672 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86078711 CCGGATAT
1 CCGGATAT
86078719 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86086592 original size:40 final size:40
Alignment explanation
Indices: 86086547--86086635 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
86086537 CGGAATATAA
*
86086547 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAAC-TCGCACAAATGCCTTCGGGTCTTAGC
* *
86086587 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
86086627 CCGGATATA
1 CCGGATATA
86086636 GCCACTAGCA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:86088942 original size:29 final size:28
Alignment explanation
Indices: 86088910--86088983 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
86088900 GATTCAAGCC
* *
86088910 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACAC-TAGTGCCATACAGTACAAACT
* *
86088939 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACAC-TAGTGCCATACAGTACAAACT
86088968 CGCACACTCAGTGCCA
1 CGCACACT-AGTGCCA
86088984 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.31, C:0.34, G:0.15, T:0.20
Consensus pattern (28 bp):
CGCACACTAGTGCCATACAGTACAAACT
Found at i:86098073 original size:23 final size:23
Alignment explanation
Indices: 86098043--86098088 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
86098033 TTACCGGTTA
86098043 CTATAGACAATTTGTAAAATATT
1 CTATAGACAATTTGTAAAATATT
86098066 CTATAGACAATTTGTAAAATATT
1 CTATAGACAATTTGTAAAATATT
86098089 TCTCTGCGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (23 bp):
CTATAGACAATTTGTAAAATATT
Found at i:86101472 original size:43 final size:42
Alignment explanation
Indices: 86101374--86101472 Score: 103
Period size: 42 Copynumber: 2.3 Consensus size: 42
86101364 GATTTAAGTA
* ** * *
86101374 TAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTCGTG
1 TAAGACCACGTCTGGGACAGAGGCATCGTATCTGATTACATG
*
86101416 TAAGACC-CTGTCTGGGACAGAGGTATCGATAT-TGAATTACATG
1 TAAGACCAC-GTCTGGGACAGAGGCATCG-TATCTG-ATTACATG
86101459 TAAGACCACGTCTG
1 TAAGACCACGTCTG
86101473 AGAAGTTGGC
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
42 25 0.53
43 21 0.45
44 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACAGAGGCATCGTATCTGATTACATG
Found at i:86103209 original size:27 final size:27
Alignment explanation
Indices: 86103179--86103270 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
86103169 ATTACCAAAG
* * *
86103179 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
86103206 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
86103233 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAAAATTACCGTTT
86103260 TACCCTCGATT
1 TACCCTCGATT
86103271 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:86103224 original size:54 final size:54
Alignment explanation
Indices: 86103152--86103270 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 54
86103142 ATTACTGAAA
* ** * * *
86103152 TACCCTCGACTTGTAAAATTACCAAAGTACCCTC-GATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAG-TTTACAAAATTACCGTTT
***
86103206 TACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAGTTTACAAAATTACCGTTT
86103260 TACCCTCGATT
1 TACCCTCGATT
86103271 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 54 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.36
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAGTACCCTCAGTTTACAAAATTACCGTTT
Found at i:86103292 original size:27 final size:26
Alignment explanation
Indices: 86103262--86103430 Score: 103
Period size: 27 Copynumber: 6.3 Consensus size: 26
86103252 TACCGTTTTA
**
86103262 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
*
86103289 CCCTG-TAG-GATAGAATTACCAAAATAC
1 CCCTGATTGTG--A-AATTACCAAAATAC
* * *
86103316 CCTTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* *
86103343 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
** * * *
86103370 CATTGGTTTGTGAAATTATCGAAATA-
1 CCCT-GATTGTGAAATTACCAAAATAC
*
86103396 CCCTCAATT-TGTAAATTACCAAAATAC
1 CCCT-GATTGTG-AAATTACCAAAATAC
86103423 CCCTGATT
1 CCCTGATT
86103431 TACAAAATTA
Statistics
Matches: 113, Mismatches: 21, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
24 1 0.01
25 4 0.04
26 21 0.19
27 83 0.73
28 2 0.02
29 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:86103343 original size:54 final size:54
Alignment explanation
Indices: 86103269--86103423 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
86103259 TTACCCTCGA
* * *
86103269 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCTTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCATTAGT
* * ** *
86103323 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCATTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCATTAGT
* * **
86103377 TTGTGAAATTATCGAAATA-CCCTCAATTTGT-AAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATACC
86103424 CCTGATTTAC
Statistics
Matches: 87, Mismatches: 12, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
53 20 0.23
54 64 0.74
55 3 0.03
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCATTAGT
Found at i:86103479 original size:27 final size:27
Alignment explanation
Indices: 86103302--86103481 Score: 182
Period size: 27 Copynumber: 6.7 Consensus size: 27
86103292 TGTAGGATAG
*
86103302 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
86103329 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
86103356 AATTACCAAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * ***
86103383 AATTATCGAAATACCCTCAATTTGT-A
1 AATTACCAAAATACCCTTGGTTTGTAA
* * **
86103409 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTGGTTTGTAA
** *
86103436 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
86103463 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
86103482 TAGGATGAAA
Statistics
Matches: 123, Mismatches: 29, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
26 19 0.15
27 104 0.85
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:86103479 original size:80 final size:81
Alignment explanation
Indices: 86103274--86103479 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 81
86103264 CTCGATTGTG
* ** * *
86103274 AAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCTTAGTTTGTAAAATTACCAA
1 AAATTACTGAAATACCCTTGGTTTG-TAGAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
**
86103338 AATACCCCTAGTTTGTA
65 AATACCCCTAGTTTACA
** * * *
86103355 AAATTACCAAAATACCATTGGTTTGT-GAAATTATCGAAATACCCTCAATTTGT-AAATTACCAA
1 AAATTACTGAAATACCCTTGGTTTGTAG-AATTACCAAAATACCCTCAATTTGTAAAATTACCAA
86103418 AATACCCCT-GATTTACA
65 AATACCCCTAG-TTTACA
* *
86103435 AAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 AAATTACTGAAATACCCTTGGTTTGTAGAATTACCAAAATACCCT
86103480 TGTAGGATGA
Statistics
Matches: 102, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
79 1 0.01
80 60 0.59
81 38 0.37
82 3 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACTGAAATACCCTTGGTTTGTAGAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCTAGTTTACA
Found at i:86104399 original size:25 final size:24
Alignment explanation
Indices: 86104361--86104430 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
86104351 AGGAAGTGCT
86104361 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
* *
86104385 GAAAAGGGCTCTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
86104410 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
86104431 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:86106321 original size:40 final size:40
Alignment explanation
Indices: 86106266--86106486 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
86106256 TATTCGAATG
86106266 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
86106306 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
86106346 ATATCCGGGCTAAGTCCAGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
86106386 ATATCCGGGCTAAGT-CCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
86106425 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
86106465 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86106487 TACTTGGGTT
Statistics
Matches: 169, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 49 0.29
40 117 0.69
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:86106447 original size:79 final size:80
Alignment explanation
Indices: 86106266--86106486 Score: 358
Period size: 79 Copynumber: 2.8 Consensus size: 80
86106256 TATTCGAATG
*
86106266 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
86106331 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* *
86106346 ATATCCGGGCTAAGTCCAGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGT-CCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
86106410 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* * *
86106425 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
86106487 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
78 7 0.05
79 70 0.53
80 55 0.42
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACT
Found at i:86114448 original size:40 final size:40
Alignment explanation
Indices: 86114393--86114613 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
86114383 TATTCGAATG
86114393 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
86114433 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
86114473 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
86114512 ATATCCGGGCTAAGTCCCGAAGGCTTTTGAGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
86114552 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
86114592 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86114614 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 52 0.31
40 114 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:86114531 original size:79 final size:80
Alignment explanation
Indices: 86114393--86114613 Score: 358
Period size: 79 Copynumber: 2.8 Consensus size: 80
86114383 TATTCGAATG
*
86114393 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
86114458 TTTGTGCTATTGACT
66 TTTGAGCTATTGACT
*
86114473 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
86114537 TTTGAGCTATTGACT
66 TTTGAGCTATTGACT
* * *
86114552 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTATATCCGGGCTAAGTCCCGAAGG
86114614 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
79 91 0.68
80 41 0.31
81 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGAGCTATTGACT
Found at i:86114609 original size:119 final size:119
Alignment explanation
Indices: 86114393--86114613 Score: 372
Period size: 119 Copynumber: 1.9 Consensus size: 119
86114383 TATTCGAATG
* *
86114393 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
86114458 TTTGTGCTATTGACTATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66 TTTGTGCGATCGACTATATCCGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
*
86114512 ATATCCGGGCTAAGTCCCGAAGGCTTTTGAGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
86114577 TTTGTGCGAGTCG-CTATATCCGGCTAAATCCCGAAGG
66 TTTGTGCGA-TCGACTATATCCGGCTAAATCCCGAAGG
86114614 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
119 93 0.98
120 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.27
Consensus pattern (119 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGATCGACTATATCCGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:86116318 original size:37 final size:37
Alignment explanation
Indices: 86116275--86116351 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
86116265 TTTCGGCCCA
86116275 GTATATGTCAAGACTAAATAGGGCTTTGGCCCAGATT
1 GTATATGTCAAGACTAAATAGGGCTTTGGCCCAGATT
86116312 GTATATGTCAAGACTAAATAGGGCTTTGGCCCAGATT
1 GTATATGTCAAGACTAAATAGGGCTTTGGCCCAGATT
86116349 GTA
1 GTA
86116352 CTGATACTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (37 bp):
GTATATGTCAAGACTAAATAGGGCTTTGGCCCAGATT
Found at i:86118939 original size:40 final size:40
Alignment explanation
Indices: 86118850--86118941 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
86118840 ATGGTATTTT
* ** *
86118850 GCACTAAGTCTGTGATTCAAAACAGCTTCGGCTATTTGAG
1 GCACTAAGTGTGAAATTCAAAACAGCTTCGGCTATCTGAG
*
86118890 GCACTAAGTGTGAAATTCAAAATAGCTTCGGCTATCTGAG
1 GCACTAAGTGTGAAATTCAAAACAGCTTCGGCTATCTGAG
86118930 GCACTAAGTGTG
1 GCACTAAGTGTG
86118942 CGATATTGAG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACTAAGTGTGAAATTCAAAACAGCTTCGGCTATCTGAG
Found at i:86123661 original size:17 final size:18
Alignment explanation
Indices: 86123632--86123665 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
86123622 TGGACCGGAT
86123632 TGGGCTATGTGGGCCCAA
1 TGGGCTATGTGGGCCCAA
86123650 TGGGCT-TGTGGGCCCA
1 TGGGCTATGTGGGCCCA
86123666 CACAGATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.12, C:0.24, G:0.41, T:0.24
Consensus pattern (18 bp):
TGGGCTATGTGGGCCCAA
Found at i:86124272 original size:27 final size:27
Alignment explanation
Indices: 86124145--86124262 Score: 164
Period size: 27 Copynumber: 4.4 Consensus size: 27
86124135 TCCCTAGTTT
* *
86124145 GTAAAATGATCATAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * *
86124172 GTAAAATGACCGTAATGCCCCTGTAGT
1 GTAAAATGACCGTAATACCCCTATAGG
86124199 GTAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * *
86124226 GTAAAATAACCGTAATACCCCTCTATG
1 GTAAAATGACCGTAATACCCCTATAGG
86124253 GTAAAATGAC
1 GTAAAATGAC
86124263 TATTATACCC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAGG
Found at i:86124489 original size:27 final size:27
Alignment explanation
Indices: 86124403--86124504 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 27
86124393 GGAAGTACTG
* * *
86124403 TACTGGTGACTATGTCACATTCACTAT
1 TACTGGTGGCTATGCCACATTTACTAT
* *
86124430 TACTGGTGGCTATGCCACAATTATTGA-
1 TACTGGTGGCTATGCCACATTTACT-AT
* *
86124457 TACTGGTTGCTTTGCCACATTTACTAT
1 TACTGGTGGCTATGCCACATTTACTAT
* ** *
86124484 TTCTGGCAGCTATGCTACATT
1 TACTGGTGGCTATGCCACATT
86124505 ATTGTTACTA
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
26 1 0.02
27 57 0.97
28 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.38
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACATTTACTAT
Found at i:86129526 original size:40 final size:41
Alignment explanation
Indices: 86129464--86129575 Score: 117
Period size: 40 Copynumber: 2.8 Consensus size: 41
86129454 CTGGCAATTA
* ** *
86129464 TATCCGGGTTAAGACCTAAAGGCAATT-GTGCTAG-CGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCAAGTC-G-TAC
*
86129505 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCAAGTCGTAC
*
86129544 TATCTGGGCTAAGACCCGAAGGC-ATTCGTGCA
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCA
86129576 CGTGGTTATA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
39 5 0.08
40 56 0.90
41 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCAAGTCGTAC
Found at i:86132334 original size:27 final size:27
Alignment explanation
Indices: 86132304--86132461 Score: 169
Period size: 27 Copynumber: 5.9 Consensus size: 27
86132294 TTTATAGTAA
86132304 AGGGTATTTCGGTAAATTT-ACAAACTG
1 AGGGTATTTCGGT-AATTTCACAAACTG
** *
86132331 AGGGTATTTTAGTAATTTCACAAATTG
1 AGGGTATTTCGGTAATTTCACAAACTG
* *
86132358 AGGGTATTTCTGTAATTTCACAAATTG
1 AGGGTATTTCGGTAATTTCACAAACTG
*
86132385 AGGGTATTTCGGTAATTTCACAAA-TC
1 AGGGTATTTCGGTAATTTCACAAACTG
* * *
86132411 AGGGGTATTTTGGTAATTTTAC-AACTT
1 A-GGGTATTTCGGTAATTTCACAAACTG
* *
86132438 AGGGGTATTTCAGTAATTTTACAA
1 A-GGGTATTTCGGTAATTTCACAA
86132462 GTCGAGGGTC
Statistics
Matches: 115, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.08
27 105 0.91
28 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTCACAAACTG
Found at i:86132417 original size:81 final size:81
Alignment explanation
Indices: 86132304--86132470 Score: 214
Period size: 81 Copynumber: 2.1 Consensus size: 81
86132294 TTTATAGTAA
*
86132304 AGGGTATTTCGGTAAATTTACAAACTGAGGGTATTTTAGTAATTTCACAAATT-GAGGGTATTTC
1 AGGGTATTTCGGTAAATTTACAAACAGAGGGTATTTTAGTAATTTCACAAATTAG-GGGTATTTC
* *
86132368 TGTAATTTCACAAATTG
65 AGTAATTTCACAAATCG
* * *
86132385 AGGGTATTTCGGT-AATTTCACAAATCAG-GGGTATTTTGGTAATTTTACAACTTAGGGGTATTT
1 AGGGTATTTCGGTAAATTT-ACAAA-CAGAGGGTATTTTAGTAATTTCACAAATTAGGGGTATTT
* *
86132448 CAGTAATTTTACAAGTCG
64 CAGTAATTTCACAAATCG
86132466 AGGGT
1 AGGGT
86132471 CTTAACGACC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
80 5 0.07
81 67 0.89
82 3 0.04
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCGGTAAATTTACAAACAGAGGGTATTTTAGTAATTTCACAAATTAGGGGTATTTCA
GTAATTTCACAAATCG
Found at i:86144816 original size:27 final size:28
Alignment explanation
Indices: 86144759--86144828 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
86144749 AAACTTGTAC
*
86144759 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
86144787 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
86144814 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
86144829 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:86144839 original size:27 final size:27
Alignment explanation
Indices: 86144759--86144840 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
86144749 AAACTTGTAC
* * *
86144759 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
86144787 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
86144814 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
86144841 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:86161777 original size:45 final size:44
Alignment explanation
Indices: 86161713--86161885 Score: 251
Period size: 45 Copynumber: 3.9 Consensus size: 44
86161703 TGTACAGTAC
*
86161713 TATTCGCGCCTTAGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCG-GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
86161758 TATTCGGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGG-CCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
86161803 TATTCGGTCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGATAT
1 TATTCGG-CCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* * *
86161848 TATTCGGGCC-TCGAGCCTAGCAGGCGA-AATACCGGTGA
1 TATTC-GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
86161886 ATGAATTCGG
Statistics
Matches: 119, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
43 9 0.08
44 16 0.13
45 92 0.77
46 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (44 bp):
TATTCGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:86167790 original size:28 final size:27
Alignment explanation
Indices: 86167759--86167821 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
86167749 AGTTACTAGA
*
86167759 ATACCCCTAAGTATGGAAAATTACCATT
1 ATACCCCTAAG-ATGGAAAATGACCATT
* * *
86167787 ATACCCGT-AGGTGTAAAATGACCATT
1 ATACCCCTAAGATGGAAAATGACCATT
86167813 ATACCCCTA
1 ATACCCCTA
86167822 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 20 0.69
27 2 0.07
28 7 0.24
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGGAAAATGACCATT
Found at i:86167969 original size:27 final size:27
Alignment explanation
Indices: 86167930--86168016 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 27
86167920 GGAAGCGTCT
* *
86167930 TGGTGGCTATGCCACAATTATCTGTTC
1 TGGTGGCTCTGCCACAAATATCTGTTC
*
86167957 TGGTGGTTCTGCCACAAATATCTGTTC
1 TGGTGGCTCTGCCACAAATATCTGTTC
*
86167984 TGGTGGCTCTGCCACAAATATCTATATC
1 TGGTGGCTCTGCCACAAATATCTGT-TC
86168012 TGGTG
1 TGGTG
86168017 ACTATATCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 47 0.87
28 7 0.13
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAAATATCTGTTC
Found at i:86168027 original size:28 final size:27
Alignment explanation
Indices: 86167930--86168040 Score: 71
Period size: 27 Copynumber: 4.1 Consensus size: 27
86167920 GGAAGCGTCT
* * * *
86167930 TGGTGGCTATGCCACAATTATCTGTTC
1 TGGTGACTATACCACAAATATCTATTC
** * * *
86167957 TGGTGGTTCTGCCACAAATATCTGTTC
1 TGGTGACTATACCACAAATATCTATTC
* * *
86167984 TGGTGGCTCTGCCACAAATATCTATATC
1 TGGTGACTATACCACAAATATCTAT-TC
* * *
86168012 TGGTGACTATATCAC-ATTATCTGTTC
1 TGGTGACTATACCACAAATATCTATTC
86168038 TGG
1 TGG
86168041 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.07
27 54 0.75
28 13 0.18
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (27 bp):
TGGTGACTATACCACAAATATCTATTC
Found at i:86169033 original size:15 final size:16
Alignment explanation
Indices: 86169004--86169041 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
86168994 AATGGGTCTA
86169004 TAAAAACAAATATTTT
1 TAAAAACAAATATTTT
*
86169020 TAAAAATAAA-ATTTT
1 TAAAAACAAATATTTT
86169035 TACAAAA
1 TA-AAAA
86169042 GTTACGAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (16 bp):
TAAAAACAAATATTTT
Found at i:86176099 original size:40 final size:40
Alignment explanation
Indices: 86175996--86176210 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
86175986 CGGATGATAA
* *
86175996 CCGGGCTAAG-CCCG-AGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
86176034 CCGGGCTAAG-CCCGAAGGAATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
86176073 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
86176113 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
86176153 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
86176193 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
86176211 TACTTGGTTG
Statistics
Matches: 164, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 14 0.09
39 46 0.28
40 104 0.63
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:86187803 original size:29 final size:28
Alignment explanation
Indices: 86187771--86187850 Score: 88
Period size: 29 Copynumber: 2.8 Consensus size: 28
86187761 GTGACGAGAT
* *
86187771 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
86187800 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
*
86187829 TGGCACTATGTGTGCGGGCTTG
1 TGGCACTA-GTGTGCGAGCTTG
86187851 AATCACGTGG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 1 0.02
29 42 0.98
ACGTcount: A:0.19, C:0.15, G:0.35, T:0.31
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTTGGAATATA
Found at i:86191658 original size:10 final size:10
Alignment explanation
Indices: 86191643--86191667 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
86191633 AAAATATCAA
86191643 ACATATATGC
1 ACATATATGC
86191653 ACATATATGC
1 ACATATATGC
86191663 ACATA
1 ACATA
86191668 ACCGAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (10 bp):
ACATATATGC
Found at i:86197789 original size:33 final size:33
Alignment explanation
Indices: 86197747--86197810 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
86197737 TTAGGCCCAC
* *
86197747 ACTGTTACTGTATAGGGCTAAGGCCCAGACTAT
1 ACTGATACTGGATAGGGCTAAGGCCCAGACTAT
*
86197780 ACTGATACTGGATAGGGCTCAGGCCCAGACT
1 ACTGATACTGGATAGGGCTAAGGCCCAGACT
86197811 GTTGCAGCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (33 bp):
ACTGATACTGGATAGGGCTAAGGCCCAGACTAT
Found at i:86202956 original size:42 final size:44
Alignment explanation
Indices: 86202893--86202999 Score: 121
Period size: 42 Copynumber: 2.5 Consensus size: 44
86202883 GTAACCAAAT
* * * *
86202893 ATCGATACCACTGTCCCAGACAAGGTCTTTCATG-AAAT-A-AA
1 ATCGATGCCAATGTCCCAGACAAGGTCTTACACGTAAATCATAA
* *
86202934 ATACGATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAA
1 AT-CGATGCCAATGTCCCAGACAAGGTCTTACACGTAAATCATAA
*
86202979 GTCGATGCCAATGTCCCAGAC
1 ATCGATGCCAATGTCCCAGAC
86203000 GTCGTCTTCC
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.04
42 26 0.48
43 4 0.07
44 19 0.35
45 3 0.06
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (44 bp):
ATCGATGCCAATGTCCCAGACAAGGTCTTACACGTAAATCATAA
Found at i:86210734 original size:27 final size:27
Alignment explanation
Indices: 86210704--86210792 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
86210694 CCTTATGTGA
*
86210704 TAAAATGACCAAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
86210731 TAAAATGACCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
* *
86210758 TAGAATGACCGAAATACCC-CTGTAGGG
1 TAAAATGACCGAAATACCCTC-ATAGGG
86210785 TAAAATGA
1 TAAAATGA
86210793 TTGTAATACC
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCATAGGG
Found at i:86210800 original size:27 final size:27
Alignment explanation
Indices: 86210704--86210820 Score: 112
Period size: 27 Copynumber: 4.3 Consensus size: 27
86210694 CCTTATGTGA
* *
86210704 TAAAATGACCAAAATA-CCCTCATAGGG
1 TAAAATGACCGAAATACCCCT-GTAGGG
*
86210731 TAAAATGACCGAAATA-CCCTCATAGGG
1 TAAAATGACCGAAATACCCCT-GTAGGG
*
86210758 TAGAATGACCGAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCTGTAGGG
** * * * *
86210785 TAAAATGATTGTAATACCCCGGCAAGG
1 TAAAATGACCGAAATACCCCTGTAGGG
86210812 TAAAATGAC
1 TAAAATGAC
86210821 AGATTTGTTC
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 74 0.95
28 4 0.05
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.20
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCTGTAGGG
Found at i:86210900 original size:23 final size:22
Alignment explanation
Indices: 86210860--86210902 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
86210850 TTTGAGCATG
86210860 CCATGTTATATCTATGTTGCGT
1 CCATGTTATATCTATGTTGCGT
86210882 CCATGTATGATAT-TATGTTGC
1 CCATGT-T-ATATCTATGTTGC
86210903 ATCGCATGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 9 0.47
24 4 0.21
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (22 bp):
CCATGTTATATCTATGTTGCGT
Found at i:86224138 original size:40 final size:40
Alignment explanation
Indices: 86224079--86224265 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
86224069 CATTGGAATG
* * * *
86224079 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
86224119 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
86224159 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
86224199 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
86224239 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
86224266 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:86224181 original size:80 final size:80
Alignment explanation
Indices: 86224079--86224232 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
86224069 CATTGGAATG
* * ** *
86224079 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
86224144 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
86224159 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
86224224 ATCGTGCGA
66 ATCGTGCGA
86224233 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:86224247 original size:80 final size:80
Alignment explanation
Indices: 86224083--86224265 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
86224073 GGAATGATAT
* ** * *
86224083 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
86224148 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
86224163 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
86224228 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
86224243 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
86224266 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:86224285 original size:80 final size:80
Alignment explanation
Indices: 86224083--86224300 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
86224073 GGAATGATAT
* * * * * * * *
86224083 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
86224147 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
86224163 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
86224228 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
86224243 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
86224301 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:86232581 original size:40 final size:40
Alignment explanation
Indices: 86232473--86232682 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
86232463 CGGGATTTAA
* * * * *
86232473 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
86232513 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86232553 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86232593 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86232633 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86232673 CCGGATATAT
1 CCGGATATAT
86232683 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:86235510 original size:40 final size:40
Alignment explanation
Indices: 86235451--86235637 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
86235441 CATTGGAATG
* * * *
86235451 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
86235491 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* * **
86235531 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
86235571 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
86235611 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
86235638 CGAGCGAGTC
Statistics
Matches: 120, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.03
40 113 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:86235585 original size:80 final size:80
Alignment explanation
Indices: 86235451--86235604 Score: 209
Period size: 80 Copynumber: 1.9 Consensus size: 80
86235441 CATTGGAATG
* * * ** *
86235451 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCAAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
86235516 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
86235531 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCAAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
86235596 ATCGTGCGA
66 ATCGTGCGA
86235605 ATCACTATAA
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 63 1.00
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCAAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:86240985 original size:2 final size:2
Alignment explanation
Indices: 86240978--86241019 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
86240968 TTACACATAC
86240978 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86241020 TTGTATATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86244056 original size:26 final size:26
Alignment explanation
Indices: 86244027--86244116 Score: 108
Period size: 26 Copynumber: 3.5 Consensus size: 26
86244017 TACATGGTTG
*
86244027 CTCACATGAGCTGTGAAATGGGTCTA
1 CTCACACGAGCTGTGAAATGGGTCTA
** *
86244053 CTCACACGATTTGTGAAATGGGTCTG
1 CTCACACGAGCTGTGAAATGGGTCTA
* * *
86244079 CTCACACCAGCTATGAAATGGGCCTA
1 CTCACACGAGCTGTGAAATGGGTCTA
*
86244105 CTCACATGAGCT
1 CTCACACGAGCT
86244117 ATGGGTCGAA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
CTCACACGAGCTGTGAAATGGGTCTA
Found at i:86252332 original size:29 final size:29
Alignment explanation
Indices: 86252299--86252430 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
86252289 GTGACGAGAT
*
86252299 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
86252328 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
86252357 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
86252386 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
86252415 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
86252431 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:86260147 original size:29 final size:29
Alignment explanation
Indices: 86260114--86260245 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
86260104 GTGACGAGAT
*
86260114 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
86260143 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
86260172 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
86260201 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
86260230 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
86260246 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:86261830 original size:64 final size:63
Alignment explanation
Indices: 86261753--86261924 Score: 191
Period size: 67 Copynumber: 2.7 Consensus size: 63
86261743 AGACATTATG
* *
86261753 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAACAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAACAGAGCTACGAGATA
* * * * * *
86261816 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAACAGAGCTACGAGA
86261881 TA
62 TA
** * * *
86261883 AACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGT
86261925 GTACAAGAGA
Statistics
Matches: 87, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
63 9 0.10
64 25 0.29
66 24 0.28
67 29 0.33
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAACAGAGCTACGAGATA
Found at i:86270846 original size:50 final size:49
Alignment explanation
Indices: 86270761--86270856 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 49
86270751 TAAGGCAAAC
* *
86270761 TGAGTCCAAGGTTTGTTGGACATACGAGATTATTGAGAGAGTTGGATCG
1 TGAGTCCAAGGTTTATTAGACATACGAGATTATTGAGAGAGTTGGATCG
*
86270810 TGAGTCCAAGGTTTATTAGACCCTACGAGATTATTGAGAGAGTTGGA
1 TGAGTCCAAGGTTTATTAGA-CATACGAGATTATTGAGAGAGTTGGA
86270857 CCGTTAGCCT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
49 18 0.42
50 25 0.58
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.30
Consensus pattern (49 bp):
TGAGTCCAAGGTTTATTAGACATACGAGATTATTGAGAGAGTTGGATCG
Found at i:86277707 original size:25 final size:25
Alignment explanation
Indices: 86277679--86277757 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
86277669 ACTCGGCCCT
*
86277679 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
86277704 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
86277726 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
86277751 ATCACAT
1 ATCACAT
86277758 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:86277803 original size:49 final size:49
Alignment explanation
Indices: 86277629--86277980 Score: 545
Period size: 49 Copynumber: 7.3 Consensus size: 49
86277619 CCCTTCGGGA
* * * * * * *
86277629 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
86277676 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
86277723 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
86277770 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
86277819 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
**
86277868 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
86277917 CTTATCACATATATACACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
86277966 CTTATCACATATATA
1 CTTATCACATATATA
86277981 TATCTCATAC
Statistics
Matches: 286, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 95 0.33
48 3 0.01
49 188 0.66
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86291314 original size:40 final size:40
Alignment explanation
Indices: 86291259--86291483 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
86291249 TATTCGGATG
*
86291259 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
86291299 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGTGACTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TT-TGTG-CGAGTTACT
* * * *
86291342 ATACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
86291382 ATTTTCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
86291422 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
86291462 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86291484 TACTTGGTTT
Statistics
Matches: 157, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 14 0.09
40 102 0.65
41 6 0.04
42 6 0.04
43 29 0.18
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:86291402 original size:83 final size:80
Alignment explanation
Indices: 86291263--86291453 Score: 258
Period size: 83 Copynumber: 2.4 Consensus size: 80
86291253 CGGATGATAT
* *
86291263 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCTGGGCTAAGACCCGAAGGCA--TG
* *
86291328 TGTGACTAGTTGCTATAC
64 TGTG-CGAGTTACTATAC
* * *
86291346 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAT-TTTCGGGCTAAGACCCGAAGGCATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCT-GGGCTAAGACCCGAAGGCATGT
*
86291410 GTGCGAGTTACTATAT
65 GTGCGAGTTACTATAC
*
86291426 CCGGGTTAAGTCCCGAAGGCATTTGTGC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC
86291454 GAGTTGCGAT
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
80 36 0.37
81 6 0.06
82 2 0.02
83 53 0.55
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCTGGGCTAAGACCCGAAGGCATGTG
TGCGAGTTACTATAC
Found at i:86299339 original size:40 final size:40
Alignment explanation
Indices: 86299284--86299505 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
86299274 TATTCGGATG
*
86299284 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
86299324 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
86299367 ATA-CCCGGCTAAGTCCCGAAGGCA-TTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
86299405 AT-TTCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
86299444 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTT-GT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
86299483 GATATCC-GGCTAAATCCCGAAGG
1 -ATATCCGGGCTAAGTCCCGAAGG
86299506 TACTTGGTTT
Statistics
Matches: 154, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
38 25 0.16
39 27 0.18
40 67 0.44
41 6 0.04
42 20 0.13
43 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:86304794 original size:14 final size:15
Alignment explanation
Indices: 86304764--86304796 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
86304754 CGCCCTGAAT
86304764 TTGGGCCTAGAAGTA
1 TTGGGCCTAGAAGTA
*
86304779 TTGGGCCTTG-AGTA
1 TTGGGCCTAGAAGTA
86304793 TTGG
1 TTGG
86304797 TCCCTAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.18, C:0.12, G:0.36, T:0.33
Consensus pattern (15 bp):
TTGGGCCTAGAAGTA
Found at i:86305698 original size:17 final size:17
Alignment explanation
Indices: 86305676--86305733 Score: 116
Period size: 17 Copynumber: 3.4 Consensus size: 17
86305666 TGGGCCTCGA
86305676 TGGGCCTGATGGCCCCG
1 TGGGCCTGATGGCCCCG
86305693 TGGGCCTGATGGCCCCG
1 TGGGCCTGATGGCCCCG
86305710 TGGGCCTGATGGCCCCG
1 TGGGCCTGATGGCCCCG
86305727 TGGGCCT
1 TGGGCCT
86305734 ACTTCTGCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.05, C:0.34, G:0.41, T:0.19
Consensus pattern (17 bp):
TGGGCCTGATGGCCCCG
Found at i:86310001 original size:27 final size:27
Alignment explanation
Indices: 86309971--86310023 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
86309961 ACAGCTAATA
*
86309971 CTAATTCTG-TATTGGGCTTAGGCCCAC
1 CTAATTCTGTTAGTGGGC-TAGGCCCAC
86309998 CTAATTCTGTTAGTGGGCTAGGCCCA
1 CTAATTCTGTTAGTGGGCTAGGCCCA
86310024 ACTGTTACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.32
Consensus pattern (27 bp):
CTAATTCTGTTAGTGGGCTAGGCCCAC
Found at i:86310746 original size:256 final size:250
Alignment explanation
Indices: 86310264--86310747 Score: 727
Period size: 256 Copynumber: 1.9 Consensus size: 250
86310254 AGGAGGATCG
* *
86310264 GTGCTGCGAGGGACTCGGAGGTGGCCACACAACTACTATTGTTTCTGATTTTCTTTTAAGTTATC
1 GTGCTGCGAAGGACTCGGAGGTGGCCACACAACTACTATTGTTTCTGATTTTATTTTAAGTTATC
86310329 TATTTACAAGTACTTATATTGGGTTGTAACAAGGCCCCTTTTAATTTCTGGTTCTAAATTTGGAA
66 TATTTACAAGTACTTATATTGGGTTGTAACAAGGCCCCTTTTAATTTCTGGTTCTAAATTTGGAA
* * * * *
86310394 TTTTATATACTGTTTTATAACTACTGGAGTAGGACATAGTTTTTTTTTCCAAAACAATAACTGTT
131 TTTTATATACTGTTTTATAACTACTAGAGTAGAACATAGGTTTCTTATCCAAAACAATAACTGTT
** *
86310459 TTTCAAAATATCACGTTTCTGCAAGACTTTAAAATGGCTCTGAATTCTGAATTCT
196 TTTCAAAATATCACGTTTCCACAAAACTTTAAAATGGCTCTGAATTCTGAATTCT
*
86310514 GTGCTGCGAAGGACTCGGAGGTGGCCACACAACTGCTATTGTTTCTGATTTTATTTTAAGTTATC
1 GTGCTGCGAAGGACTCGGAGGTGGCCACACAACTACTATTGTTTCTGATTTTATTTTAAGTTATC
* *
86310579 TATTTACAAGTACTTATATTTGATCTGGGTTGTGACAAGGCCTCTTTTAATTTCTGGTTCTAAAT
66 TATTTACAAGTAC-T-TA--T-AT-TGGGTTGTAACAAGGCCCCTTTTAATTTCTGGTTCTAAAT
* * * *
86310644 TTGGAATTTTATATACTGTTTTATAATTGCTAGAGTAGAACA-CGGTTTCTTATCCAAAATAATA
125 TTGGAATTTTATATACTGTTTTATAACTACTAGAGTAGAACATAGGTTTCTTATCCAAAACAATA
**
86310708 ACTGTTTTTTTTAAATATCACGTTTCCACAAAACTTTAAA
190 ACTG-TTTTTCAAAATATCACGTTTCCACAAAACTTTAAA
86310748 CTAATCTTCC
Statistics
Matches: 208, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
250 75 0.36
251 1 0.00
252 2 0.01
254 1 0.00
255 23 0.11
256 106 0.51
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (250 bp):
GTGCTGCGAAGGACTCGGAGGTGGCCACACAACTACTATTGTTTCTGATTTTATTTTAAGTTATC
TATTTACAAGTACTTATATTGGGTTGTAACAAGGCCCCTTTTAATTTCTGGTTCTAAATTTGGAA
TTTTATATACTGTTTTATAACTACTAGAGTAGAACATAGGTTTCTTATCCAAAACAATAACTGTT
TTTCAAAATATCACGTTTCCACAAAACTTTAAAATGGCTCTGAATTCTGAATTCT
Found at i:86313964 original size:49 final size:50
Alignment explanation
Indices: 86313841--86313988 Score: 174
Period size: 50 Copynumber: 3.0 Consensus size: 50
86313831 ATGATCTATT
* * **
86313841 GTGAGGTCGCATGTGTAGTACTAATTGCTGGCTACTACGTGTATTAGATG
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
* * * *
86313891 GTGAGGTCACGTATGTAGTACTAAGTGCAGGATACTACGTGTACCAGACT-
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG
* * *
86313941 GT-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
86313989 AGCTTCGGCT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.01
49 38 0.46
50 42 0.51
51 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (50 bp):
GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
Found at i:86316295 original size:94 final size:92
Alignment explanation
Indices: 86316054--86316309 Score: 272
Period size: 94 Copynumber: 2.8 Consensus size: 92
86316044 ATGCGTGCTG
*
86316054 ATGCATGTCCCAGACATGTCTTACACTAGCACAACTC-T--TA--GCCGATGCATGTCCCAGACA
1 ATGCATGTCCCAGACATGTCTTACACT-G-AC-ACTCATAATATGGCCGAAGCATGTCCCAGACA
* * ** *
86316114 CGTCTTACACTGGCTTTCTCTGTCGAGGCCG
63 TGTCTTACACTAGCCCTCTCTG-CGAGGCCA
* * * *
86316145 ATGCATGTCCTAGACATGTCTTACTCTGACACTCATAATATGGCTGAAGCATGTCCCAAACATGT
1 ATGCATGTCCCAGACATGTCTTACACTGACACTCATAATATGGCCGAAGCATGTCCCAGACATGT
*
86316210 CTTACACTAGCCCTCGTCTG-GATGCCA
66 CTTACACTAGCCCTC-TCTGCGAGGCCA
* * * *
86316237 ATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGACAT
1 ATG-CATGTCCCAGACAT-GTCTTACACTGACACTCATAATATGGCCGAAGCATGTCCCAGACAT
86316302 GTCTTACA
64 GTCTTACA
86316310 TTGCCGCACA
Statistics
Matches: 138, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
88 4 0.03
89 3 0.02
90 1 0.01
91 27 0.20
92 8 0.06
93 43 0.31
94 52 0.38
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (92 bp):
ATGCATGTCCCAGACATGTCTTACACTGACACTCATAATATGGCCGAAGCATGTCCCAGACATGT
CTTACACTAGCCCTCTCTGCGAGGCCA
Found at i:86316684 original size:30 final size:30
Alignment explanation
Indices: 86316650--86316735 Score: 154
Period size: 30 Copynumber: 2.9 Consensus size: 30
86316640 ATTCACAACT
*
86316650 TTGGCAAAATAACCATTTTGCCCCTAGGCC
1 TTGGCAAAATGACCATTTTGCCCCTAGGCC
*
86316680 TTGGCAAAATGACCATTTTGCCTCTAGGCC
1 TTGGCAAAATGACCATTTTGCCCCTAGGCC
86316710 TTGGCAAAATGACCATTTTGCCCCTA
1 TTGGCAAAATGACCATTTTGCCCCTA
86316736 CATCCAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (30 bp):
TTGGCAAAATGACCATTTTGCCCCTAGGCC
Found at i:86317072 original size:12 final size:12
Alignment explanation
Indices: 86317055--86317079 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86317045 TAAAAATGTA
86317055 AAAATCATCAAG
1 AAAATCATCAAG
86317067 AAAATCATCAAG
1 AAAATCATCAAG
86317079 A
1 A
86317080 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:86351150 original size:93 final size:93
Alignment explanation
Indices: 86351038--86351209 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86351028 GCCCATAAGT
* *
86351038 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86351103 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
86351131 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86351196 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
86351210 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86351205 original size:46 final size:46
Alignment explanation
Indices: 86351030--86351205 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
86351020 TGTAACCCGC
* * *
86351030 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
86351076 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
86351126 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
86351169 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86351206 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:86353632 original size:30 final size:30
Alignment explanation
Indices: 86353588--86353676 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
86353578 CAAAGATAAC
86353588 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
86353617 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
86353647 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
86353677 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:86353636 original size:15 final size:15
Alignment explanation
Indices: 86353588--86353667 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
86353578 CAAAGATAAC
*
86353588 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
86353602 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
86353617 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
86353632 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
86353647 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
86353662 AAGAAA
1 AAGAAA
86353668 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:86353676 original size:15 final size:15
Alignment explanation
Indices: 86353599--86353676 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
86353589 AGAAAACCGA
86353599 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
86353614 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
86353628 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
86353643 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
86353659 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
86353674 ATA
1 ATA
86353677 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86356739 original size:93 final size:93
Alignment explanation
Indices: 86356627--86356798 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86356617 GCCCATAAGT
* *
86356627 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86356692 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
86356720 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86356785 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
86356799 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86356794 original size:46 final size:46
Alignment explanation
Indices: 86356619--86356794 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
86356609 TGTAACCCGC
* * *
86356619 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
86356665 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
86356715 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
86356758 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86356795 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:86358602 original size:40 final size:39
Alignment explanation
Indices: 86358547--86358674 Score: 195
Period size: 40 Copynumber: 3.3 Consensus size: 39
86358537 ATATATTATA
86358547 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAGTG
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTA-TG
86358587 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGT-ATG
* * * *
86358627 TATATCCGGGTTAAATCCCGTAGGCTTAGTGCTAGTAT-
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTATG
86358665 TATATCCGGG
1 TATATCCGGG
86358675 CTTAAAGTTT
Statistics
Matches: 83, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
38 10 0.12
39 2 0.02
40 70 0.84
41 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (39 bp):
TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTATG
Found at i:86360603 original size:24 final size:24
Alignment explanation
Indices: 86360311--86360601 Score: 501
Period size: 24 Copynumber: 12.1 Consensus size: 24
86360301 GCAAAGACCA
86360311 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
86360335 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
86360359 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
86360383 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
86360407 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
86360431 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
86360455 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
86360479 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
86360503 TATGGCACTATGTGTGCGATCTAC
1 TATGGCACTATGTGTGCGATTTAC
86360527 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
86360551 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
86360575 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
86360599 TAT
1 TAT
86360602 AGTCACATTC
Statistics
Matches: 257, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 257 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:86368249 original size:20 final size:21
Alignment explanation
Indices: 86368205--86368249 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
86368195 TAAATAGCTT
* * *
86368205 AAATGATGGTTGAATGAGTAG
1 AAATCATGGTTGAATAAGTAC
86368226 AAATCATGGTTGAA-AAGTAC
1 AAATCATGGTTGAATAAGTAC
86368246 AAAT
1 AAAT
86368250 TGAAAGTTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.44, C:0.04, G:0.24, T:0.27
Consensus pattern (21 bp):
AAATCATGGTTGAATAAGTAC
Found at i:86369844 original size:40 final size:40
Alignment explanation
Indices: 86369789--86369952 Score: 260
Period size: 40 Copynumber: 4.2 Consensus size: 40
86369779 ATATATTATA
*
86369789 TATATCCGGGTCAAATCCCGCAGGCTTTGTGCTGGTAATG
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
86369829 TATATCCGGGTCAAATCCCGTAGGCTTCGTGTTGGTAATG
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
86369869 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
* * *
86369909 TATATCCGGGTTAAATCCCACAGGCTTAGTGCTGGT-AT-
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
86369947 TATATC
1 TATATC
86369953 AGGGCTTAAA
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 6 0.05
39 2 0.02
40 108 0.93
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (40 bp):
TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:86371833 original size:22 final size:22
Alignment explanation
Indices: 86371805--86371854 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
86371795 TTCCACAGCC
86371805 AATTCCAAATCATGAGTCGGAT
1 AATTCCAAATCATGAGTCGGAT
86371827 AATTCCAAATCATGAGTCGGAT
1 AATTCCAAATCATGAGTCGGAT
86371849 AATTCC
1 AATTCC
86371855 TTTCGTGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (22 bp):
AATTCCAAATCATGAGTCGGAT
Found at i:86378219 original size:40 final size:40
Alignment explanation
Indices: 86378175--86378370 Score: 272
Period size: 40 Copynumber: 4.9 Consensus size: 40
86378165 GGATATAGCT
* *
86378175 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
86378215 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
86378255 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
86378295 ACTGGGACAAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
86378335 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
86378371 CATCCGAATA
Statistics
Matches: 137, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
39 2 0.01
40 133 0.97
41 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:86378296 original size:80 final size:80
Alignment explanation
Indices: 86378175--86378366 Score: 314
Period size: 80 Copynumber: 2.4 Consensus size: 80
86378165 GGATATAGCT
* * * *
86378175 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
86378240 AGCCCGGATTTGGTA
66 AGCCCGGATTTGGTA
* *
86378255 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAACTGGGACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACT
86378319 TAGCCCGGATTTGGTA
65 TAGCCCGGATTTGGTA
86378335 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
86378367 TTATCATCCG
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
79 1 0.01
80 104 0.99
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGATTTGGTA
Found at i:86385499 original size:30 final size:30
Alignment explanation
Indices: 86385465--86385555 Score: 146
Period size: 30 Copynumber: 3.0 Consensus size: 30
86385455 CACAGCCTGG
** *
86385465 CACATGGCAATGTGTCCAGCCCGTGTGGCT
1 CACATGGCCGTGTGTCTAGCCCGTGTGGCT
86385495 CACATGGCCGTGTGTCTAGCCCGTGTGGCT
1 CACATGGCCGTGTGTCTAGCCCGTGTGGCT
*
86385525 CACATGGCCGTGTGTCTAGCCCATGTGGCT
1 CACATGGCCGTGTGTCTAGCCCGTGTGGCT
86385555 C
1 C
86385556 TTGAGATCTA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.13, C:0.31, G:0.31, T:0.25
Consensus pattern (30 bp):
CACATGGCCGTGTGTCTAGCCCGTGTGGCT
Found at i:86385507 original size:17 final size:17
Alignment explanation
Indices: 86385485--86385538 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
86385475 TGTGTCCAGC
86385485 CCGTGTGGCTCACATGG
1 CCGTGTGGCTCACATGG
* *
86385502 CCGTGT-G-TC-TA-GC
1 CCGTGTGGCTCACATGG
86385515 CCGTGTGGCTCACATGG
1 CCGTGTGGCTCACATGG
86385532 CCGTGTG
1 CCGTGTG
86385539 TCTAGCCCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
13 7 0.24
14 2 0.07
15 4 0.14
16 2 0.07
17 14 0.48
ACGTcount: A:0.09, C:0.30, G:0.35, T:0.26
Consensus pattern (17 bp):
CCGTGTGGCTCACATGG
Found at i:86385800 original size:27 final size:27
Alignment explanation
Indices: 86385770--86385837 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
86385760 TTTACTTGTC
*
86385770 AATTCACAAACAATAATGTCTTAAAAT
1 AATTCGCAAACAATAATGTCTTAAAAT
86385797 AATTCGCAAACAATAATGTCTTAAAAT
1 AATTCGCAAACAATAATGTCTTAAAAT
*
86385824 AATTTGCAAACAAT
1 AATTCGCAAACAAT
86385838 CATGCATTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.50, C:0.15, G:0.06, T:0.29
Consensus pattern (27 bp):
AATTCGCAAACAATAATGTCTTAAAAT
Found at i:86387335 original size:18 final size:18
Alignment explanation
Indices: 86387313--86387368 Score: 53
Period size: 18 Copynumber: 2.9 Consensus size: 18
86387303 AGAAACCCAA
86387313 AAAAATAAAAAATAAAA-
1 AAAAATAAAAAATAAAAG
86387330 ACAAAATAACTAAAAATAAGAAG
1 A-AAAAT-A--AAAAATAA-AAG
86387353 AAAAAT-AAAAATAAAA
1 AAAAATAAAAAATAAAA
86387369 CCGAAATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
17 3 0.09
18 13 0.39
19 1 0.03
21 8 0.24
22 7 0.21
23 1 0.03
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (18 bp):
AAAAATAAAAAATAAAAG
Found at i:86387357 original size:22 final size:21
Alignment explanation
Indices: 86387320--86387368 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 21
86387310 CAAAAAAATA
86387320 AAAAATAAAAACAAAATAACT
1 AAAAATAAAAACAAAATAACT
* *
86387341 AAAAATAAGAA-GAAA-AA-T
1 AAAAATAAAAACAAAATAACT
86387359 AAAAATAAAA
1 AAAAATAAAA
86387369 CCGAAATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 10 0.40
19 2 0.08
20 3 0.12
21 10 0.40
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (21 bp):
AAAAATAAAAACAAAATAACT
Found at i:86387357 original size:28 final size:28
Alignment explanation
Indices: 86387313--86387366 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
86387303 AGAAACCCAA
86387313 AAAAATAAAAAATAAAA-ACAAAATAACT
1 AAAAATAAAAAATAAAATA-AAAATAACT
*
86387341 AAAAATAAGAAGA-AAAATAAAAATAA
1 AAAAATAA-AAAATAAAATAAAAATAA
86387367 AACCGAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAAATAAAATAAAAATAACT
Found at i:86389808 original size:40 final size:40
Alignment explanation
Indices: 86389720--86389849 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
86389710 ATGCTGGAAA
* * *
86389720 TTATATCCAGGTTAAGACCCGAAGGCAATT-GTGCTAG-CGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTC-G
* *
86389760 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
* * *
86389800 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
86389840 TTATATCCGG
1 TTATATCCGG
86389850 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
Found at i:86397793 original size:17 final size:17
Alignment explanation
Indices: 86397771--86397803 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
86397761 AAGAAGAAGA
86397771 AATGAATCTTAAAAACG
1 AATGAATCTTAAAAACG
86397788 AATGAATCTTAAAAAC
1 AATGAATCTTAAAAAC
86397804 TTAAAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
AATGAATCTTAAAAACG
Found at i:86406152 original size:42 final size:43
Alignment explanation
Indices: 86406044--86406152 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 43
86406034 ATACCAATGT
*** *
86406044 CATATCCCAGATATGGTCTTACA-TGGGATCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACAAAGATCTCAAATTGATGC
* * *
86406086 CAATAGCCCAGCTATGGTCTTACACAAAG-TCTCAAATTGTTGC
1 C-ATATCCCAGATATGGTCTTACACAAAGATCTCAAATTGATGC
*
86406129 CATATCCCATATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
86406153 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 21 0.38
43 33 0.60
44 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (43 bp):
CATATCCCAGATATGGTCTTACACAAAGATCTCAAATTGATGC
Found at i:86410797 original size:42 final size:41
Alignment explanation
Indices: 86410717--86410866 Score: 144
Period size: 41 Copynumber: 3.6 Consensus size: 41
86410707 GAGCTTGGTC
*
86410717 TCGAAGGGCTTTTGAGCTAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
86410758 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
86410800 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
* *
86410841 TCGAAGGGATTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
86410867 GAGTCGGACT
Statistics
Matches: 88, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
39 4 0.05
40 9 0.10
41 36 0.41
42 28 0.32
43 11 0.12
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:86414118 original size:29 final size:27
Alignment explanation
Indices: 86414084--86414186 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
86414074 TACTCAATCA
*
86414084 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
86414113 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
86414142 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
86414171 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86414187 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:86421954 original size:40 final size:40
Alignment explanation
Indices: 86421895--86422081 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
86421885 CATTGGAATG
* * * *
86421895 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
86421935 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
86421975 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
86422015 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
86422055 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
86422082 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:86421997 original size:80 final size:80
Alignment explanation
Indices: 86421895--86422048 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
86421885 CATTGGAATG
* * ** *
86421895 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
86421960 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
86421975 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
86422040 ATCGTGCGA
66 ATCGTGCGA
86422049 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:86422063 original size:80 final size:80
Alignment explanation
Indices: 86421899--86422081 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
86421889 GGAATGATAT
* ** * *
86421899 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
86421964 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
86421979 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
86422044 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
86422059 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
86422082 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:86425151 original size:29 final size:27
Alignment explanation
Indices: 86425117--86425219 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
86425107 TACTCAATCA
*
86425117 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
86425146 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
86425175 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
86425204 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86425220 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:86431447 original size:30 final size:29
Alignment explanation
Indices: 86431353--86431454 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
86431343 TATAGTGAAT
* * *
86431353 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
86431382 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
86431410 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
86431440 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
86431455 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:86439331 original size:30 final size:29
Alignment explanation
Indices: 86439237--86439338 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
86439227 TATAGTGAAT
* * *
86439237 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
86439266 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
86439294 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
86439324 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
86439339 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:86445121 original size:42 final size:41
Alignment explanation
Indices: 86445031--86445180 Score: 137
Period size: 41 Copynumber: 3.6 Consensus size: 41
86445021 AGCTTGGTCT
*
86445031 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTC
* *
86445072 CGAAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTTC
1 CG-AAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTTC
* * * * *
86445115 CGAAGGGCCTTCGAGCCAGTAGTCTAAT--CTGAGCTT-GGTC
1 CGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTTC
*
86445155 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 -CGAAGGGCTTTTGAGCCAGTGCTAA
86445181 GAGTCGGACT
Statistics
Matches: 89, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
39 4 0.04
40 12 0.13
41 27 0.30
42 12 0.13
43 25 0.28
44 9 0.10
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (41 bp):
CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTC
Found at i:86448159 original size:54 final size:55
Alignment explanation
Indices: 86448078--86448187 Score: 186
Period size: 54 Copynumber: 2.0 Consensus size: 55
86448068 ATTCAGACTT
* * *
86448078 TTTTGTATTCAGCACATAAGCTTGATAAGTTTCATAGTCTTTTCTTATAC-ATTC
1 TTTTGTATTCAGCACACAAGCTTGATAAGCTTCATAGCCTTTTCTTATACAATTC
86448132 TTTTGTATTCAGCACACAAGCTTGATAAGCTTCATAGCCTTTTCTTATACAATTC
1 TTTTGTATTCAGCACACAAGCTTGATAAGCTTCATAGCCTTTTCTTATACAATTC
86448187 T
1 T
86448188 GAGCTAACAT
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
54 47 0.90
55 5 0.10
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.44
Consensus pattern (55 bp):
TTTTGTATTCAGCACACAAGCTTGATAAGCTTCATAGCCTTTTCTTATACAATTC
Found at i:86450406 original size:42 final size:42
Alignment explanation
Indices: 86450342--86450426 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
86450332 ACCCTTGTAA
86450342 CTCTCTATTTATGACGTAATCAACAAATTGAAGTCACAGGGC
1 CTCTCTATTTATGACGTAATCAACAAATTGAAGTCACAGGGC
* *
86450384 CTCTCTGTTTATGACGTCATCAACAAATTGAAGTCACAGGGC
1 CTCTCTATTTATGACGTAATCAACAAATTGAAGTCACAGGGC
86450426 C
1 C
86450427 AAGTCACACA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (42 bp):
CTCTCTATTTATGACGTAATCAACAAATTGAAGTCACAGGGC
Found at i:86454515 original size:16 final size:17
Alignment explanation
Indices: 86454494--86454525 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
86454484 CAAATTGACC
86454494 CAAAATTATA-TTTTGG
1 CAAAATTATAGTTTTGG
86454510 CAAAATTATAGTTTTG
1 CAAAATTATAGTTTTG
86454526 CCCCTAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (17 bp):
CAAAATTATAGTTTTGG
Found at i:86465482 original size:55 final size:55
Alignment explanation
Indices: 86465411--86465516 Score: 151
Period size: 55 Copynumber: 1.9 Consensus size: 55
86465401 ACATTGGGCA
*
86465411 ACACTGACTTATTAACATGGCCATGGCACACACCCGTGCT-GCCTGCCCGTGGACG
1 ACACTGACTTATTAACATGGCCATGGCACACACCCGTG-TGGCCTACCCGTGGACG
* * * *
86465466 ACACTGTCTTTTTAACATGGCCATGGCGCACGCCCGTGTGGCCTACCCGTG
1 ACACTGACTTATTAACATGGCCATGGCACACACCCGTGTGGCCTACCCGTG
86465517 TACATCTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.19, C:0.34, G:0.25, T:0.23
Consensus pattern (55 bp):
ACACTGACTTATTAACATGGCCATGGCACACACCCGTGTGGCCTACCCGTGGACG
Found at i:86475107 original size:27 final size:27
Alignment explanation
Indices: 86475061--86475112 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
86475051 CAGTAACAGT
*
86475061 TGGGCCTAACCCATTAACAGAATCAAG
1 TGGGCCTAACCCAGTAACAGAATCAAG
86475088 TGGGCCTAAGCCCAGT-ACAGAATCA
1 TGGGCCTAA-CCCAGTAACAGAATCA
86475113 GTATCAGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.35, C:0.27, G:0.21, T:0.17
Consensus pattern (27 bp):
TGGGCCTAACCCAGTAACAGAATCAAG
Found at i:86481557 original size:31 final size:31
Alignment explanation
Indices: 86481514--86481576 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
86481504 CTTTTCACAC
86481514 TTCATATCTCATAACACTGAGCCGAAGCCTT
1 TTCATATCTCATAACACTGAGCCGAAGCCTT
* ** * *
86481545 TTCATATTTCATATTACTGGGTCGAAGCCTT
1 TTCATATCTCATAACACTGAGCCGAAGCCTT
86481576 T
1 T
86481577 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTCATATCTCATAACACTGAGCCGAAGCCTT
Found at i:86481838 original size:47 final size:46
Alignment explanation
Indices: 86481784--86481879 Score: 156
Period size: 47 Copynumber: 2.1 Consensus size: 46
86481774 CCTAGCCTCT
*
86481784 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAA-CCC
* *
86481831 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAACCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAACCC
86481877 TTT
1 TTT
86481880 TGCACTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 6 0.13
47 40 0.87
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (46 bp):
TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAACCC
Found at i:86481881 original size:23 final size:24
Alignment explanation
Indices: 86481763--86481880 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
86481753 GCTTTATCGT
*
86481763 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
86481788 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86481812 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
86481835 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
86481859 ATAACTAGGGCATAA-CCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86481881 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
23 30 0.35
24 44 0.51
25 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:86481975 original size:20 final size:20
Alignment explanation
Indices: 86481930--86481995 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
86481920 TTATGAACAC
86481930 ATCATGTGCATATCAT-CAT
1 ATCATGTGCATATCATACAT
*
86481949 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
86481969 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
86481989 ACCATGT
1 ATCATGT
86481996 TTATAAAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
19 15 0.37
20 26 0.63
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:86489620 original size:31 final size:31
Alignment explanation
Indices: 86489582--86489643 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
86489572 CTTTTCACAC
86489582 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
**
86489613 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
86489644 CACTGTAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.35
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Done.