Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 28 of 433
Found at i:7251674 original size:24 final size:24
Alignment explanation
Indices: 7251617--7251694 Score: 81
Period size: 24 Copynumber: 3.3 Consensus size: 24
7251607 ATATTTTAAA
*
7251617 TTTTAAATATTTTTTAAATT-TG--
1 TTTTAAAT-TATTTTAAATTATGAT
*
7251639 TTTTAAAATATTTTAAATTATGAT
1 TTTTAAATTATTTTAAATTATGAT
* *
7251663 TTTTAAATTATTTAAAATATATTAT
1 TTTTAAATTATTTTAAAT-TATGAT
7251688 TTTTAAA
1 TTTTAAA
7251695 GATATAACCT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.21
22 9 0.19
24 16 0.34
25 12 0.26
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.58
Consensus pattern (24 bp):
TTTTAAATTATTTTAAATTATGAT
Found at i:7251776 original size:12 final size:13
Alignment explanation
Indices: 7251761--7251810 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 13
7251751 ATATTTTTTA
7251761 AATTTTAAATA-T
1 AATTTTAAATATT
7251773 AATTTTTATAAATTATT
1 AA--TTT-TAAA-TATT
7251790 AATTTTAAA-ATT
1 AATTTTAAATATT
7251802 AATTTTAAA
1 AATTTTAAA
7251811 GATATTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
12 14 0.42
14 7 0.21
15 7 0.21
16 2 0.06
17 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTTTAAATATT
Found at i:7251794 original size:29 final size:31
Alignment explanation
Indices: 7251733--7251816 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 31
7251723 TTTATAATAA
* *
7251733 TTTAAATATATTTTTTAAATATTTTTTAAAT
1 TTTAAATATAATTTTTAAATATTTATTAAAT
7251764 TTTAAATATAATTTTTATAA-A-TTATT-AAT
1 TTTAAATATAATTTTTA-AATATTTATTAAAT
*
7251793 TTTAAA-ATTAATTTTAAAGATATT
1 TTTAAATA-TAATTTTTAA-ATATT
7251817 CAAAAAATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
28 2 0.04
29 18 0.40
30 5 0.11
31 18 0.40
32 2 0.04
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (31 bp):
TTTAAATATAATTTTTAAATATTTATTAAAT
Found at i:7252642 original size:17 final size:16
Alignment explanation
Indices: 7252620--7252689 Score: 68
Period size: 17 Copynumber: 4.0 Consensus size: 16
7252610 CAACATTTTC
7252620 TTTTAACATATTTAAAA
1 TTTTAA-ATATTTAAAA
7252637 TTTTAATATATTTAAAA
1 TTTTAA-ATATTTAAAA
* *
7252654 TTTTTTAAGTTTTTTAAAA
1 --TTTTAA-ATATTTAAAA
7252673 TTTTAAATATATTAAAA
1 TTTTAAATAT-TTAAAA
7252690 AATCTTTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.05
17 28 0.64
19 14 0.32
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (16 bp):
TTTTAAATATTTAAAA
Found at i:7252660 original size:36 final size:37
Alignment explanation
Indices: 7252620--7252690 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 37
7252610 CAACATTTTC
*
7252620 TTTTAACATATTTAAAATTTT-AATATATTTAAAATT
1 TTTTAACATATTTAAAATTTTAAATATATTAAAAATT
** *
7252656 TTTTAAGTTTTTTAAAATTTTAAATATATTAAAAA
1 TTTTAACATATTTAAAATTTTAAATATATTAAAAA
7252691 ATCTTTTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 18 0.60
37 12 0.40
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (37 bp):
TTTTAACATATTTAAAATTTTAAATATATTAAAAATT
Found at i:7252801 original size:71 final size:71
Alignment explanation
Indices: 7252714--7252854 Score: 246
Period size: 71 Copynumber: 2.0 Consensus size: 71
7252704 TTTCCTATTC
* * **
7252714 AAAAATATATTGAATATATTAAAATTTTAAATTTTTTTATACTTAACATTTTTTAATATATTTAA
1 AAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTTAA
7252779 TTTTTA
66 TTTTTA
7252785 AAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTTAA
1 AAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTTAA
7252850 TTTTT
66 TTTTT
7252855 TAAGTTTTTT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (71 bp):
AAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTTAA
TTTTTA
Found at i:7253480 original size:20 final size:20
Alignment explanation
Indices: 7253423--7253472 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
7253413 TGACCAGTTA
*
7253423 TAATATATATTTTTAATTTT
1 TAATATATATTTTTATTTTT
* *
7253443 TAATTTAAATTTTTATTTTT
1 TAATATATATTTTTATTTTT
7253463 TAATATATAT
1 TAATATATAT
7253473 ATATATTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TAATATATATTTTTATTTTT
Found at i:7253756 original size:20 final size:20
Alignment explanation
Indices: 7253731--7253801 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 20
7253721 TAAAATATTT
7253731 AAATAT-TTTATATTATTAAA
1 AAATATATTTA-ATTATTAAA
7253751 AAATATATTTAA-TATTTAAA
1 AAATATATTTAATTA-TTAAA
7253771 AAATAATATTTAAAATT-TTAAA
1 AAAT-ATATTT--AATTATTAAA
7253793 AAATA-ATTT
1 AAATATATTT
7253802 CAAATATATA
Statistics
Matches: 45, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
19 2 0.04
20 20 0.44
21 11 0.24
22 9 0.20
23 2 0.04
24 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATATATTTAATTATTAAA
Found at i:7253772 original size:21 final size:21
Alignment explanation
Indices: 7253733--7253801 Score: 88
Period size: 22 Copynumber: 3.3 Consensus size: 21
7253723 AAATATTTAA
*
7253733 ATATTTTATATTATTAAAAAAT
1 ATATTTAATATT-TTAAAAAAT
7253755 ATATTTAATA-TTTAAAAAAT
1 ATATTTAATATTTTAAAAAAT
*
7253775 AATATTTAAAATTTTAAAAAAT
1 -ATATTTAATATTTTAAAAAAT
7253797 A-ATTT
1 ATATTT
7253802 CAAATATATA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
20 13 0.30
21 11 0.26
22 19 0.44
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
ATATTTAATATTTTAAAAAAT
Found at i:7253806 original size:20 final size:21
Alignment explanation
Indices: 7253746--7253808 Score: 78
Period size: 20 Copynumber: 3.0 Consensus size: 21
7253736 TTTTATATTA
7253746 TTAAAAAATATATTT-AATAT
1 TTAAAAAATATATTTAAATAT
7253766 TTAAAAAATAATATTTAAA-ATT
1 TTAAAAAAT-ATATTTAAATA-T
7253788 TTAAAAAATA-ATTTCAAATAT
1 TTAAAAAATATATTT-AAATAT
7253809 ATATTTAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
20 13 0.34
21 12 0.32
22 13 0.34
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTAAAAAATATATTTAAATAT
Found at i:7253875 original size:23 final size:23
Alignment explanation
Indices: 7253803--7253875 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7253793 AAATAATTTC
**
7253803 AAATATATATTTAAAATTTTAAA
1 AAATATATATTTAAAATTTTTTA
*
7253826 AAATATATATTATAAAATATTTT-
1 AAATATATATT-TAAAATTTTTTA
* *
7253849 AAATATACATTTTAAATTTTTTA
1 AAATATATATTTAAAATTTTTTA
7253872 AAAT
1 AAAT
7253876 TAATAATAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
22 9 0.21
23 25 0.60
24 8 0.19
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (23 bp):
AAATATATATTTAAAATTTTTTA
Found at i:7255071 original size:20 final size:21
Alignment explanation
Indices: 7255041--7255083 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
7255031 TCAGCCCTCC
*
7255041 ATTTATTTTTATTATATGTTG
1 ATTTATTTTTATTAAATGTTG
7255062 ATTT-TTTTTATTAAATGTTG
1 ATTTATTTTTATTAAATGTTG
7255082 AT
1 AT
7255084 ACTTACACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (21 bp):
ATTTATTTTTATTAAATGTTG
Found at i:7258068 original size:132 final size:132
Alignment explanation
Indices: 7257797--7258171 Score: 416
Period size: 132 Copynumber: 2.9 Consensus size: 132
7257787 TGAAAACCTA
* ** * * * * * *
7257797 AAGGAATATTCGATCGTTTTGAACAAGCGAGAAATCACAACCCAGCACGATAGGGCATGATTCC-
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCG
* * * * * * * * * *
7257861 CGAATTGTCAAACACCGAGTATTGCCTTCGTTTTAGAGGATTTTTAGAAGACCTGAATGGAATCT
66 CGAATTGCCAAATATCAAATATTGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAATCT
7257926 CG
131 CG
*
7257928 AAGGGATATTTGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCG
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCG
* **
7257993 CGAATTGCCAAATATCAAACT-TTGCCTTCGTTTTAAAGAATTTTTAAAAGGCATGGGTGAAAGT
66 CGAATTGCCAAATATCAAA-TATTGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAA-T
*
7258057 -TTG
129 CTCG
* * * *
7258060 AAGGGATATTCGATTATTTCGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCCG
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCG
* * * *
7258125 CGAATTGCCAAATATCGAATCTCGTCTTCG-TTTAAAGAATTTTTAAA
66 CGAATTGCCAAATATCAAATATTGCCTTCGTTTTAAAGAATTTTTAAA
7258172 TGAATACTTG
Statistics
Matches: 208, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
131 72 0.35
132 134 0.64
133 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (132 bp):
AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCG
CGAATTGCCAAATATCAAATATTGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAATCT
CG
Found at i:7263360 original size:23 final size:21
Alignment explanation
Indices: 7263333--7263378 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 21
7263323 GAAACAATCA
*
7263333 AAATAACTAAAATAGAAATAAAT
1 AAATAAATAAAATA-AAA-AAAT
7263356 AAATAAATAAAATAAAAAAAT
1 AAATAAATAAAATAAAAAAAT
7263377 AA
1 AA
7263379 GTAGAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 3 0.14
23 13 0.59
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (21 bp):
AAATAAATAAAATAAAAAAAT
Found at i:7263370 original size:17 final size:18
Alignment explanation
Indices: 7263342--7263386 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
7263332 AAAATAACTA
*
7263342 AAATAGAAATAAATAAAT
1 AAATAGAAATAAAAAAAT
7263360 AAATA-AAATAAAAAAAT
1 AAATAGAAATAAAAAAAT
*
7263377 AAGTAGAAAT
1 AAATAGAAAT
7263387 TATTAACTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (18 bp):
AAATAGAAATAAAAAAAT
Found at i:7265298 original size:12 final size:12
Alignment explanation
Indices: 7265281--7265305 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7265271 ATAAATAAAT
7265281 AGAAAGAAAAGG
1 AGAAAGAAAAGG
7265293 AGAAAGAAAAGG
1 AGAAAGAAAAGG
7265305 A
1 A
7265306 AAATTTTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAGG
Found at i:7265974 original size:30 final size:29
Alignment explanation
Indices: 7265940--7265999 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
7265930 AGTCCTTGTA
7265940 TTTTTGAATTAGTCAATTCTAGTCTATGAC
1 TTTTTGAATTAGTCAATTCTAGTCT-TGAC
* *
7265970 TTTTTGAATTGGTCAATTTTAGTCTTGAC
1 TTTTTGAATTAGTCAATTCTAGTCTTGAC
7265999 T
1 T
7266000 CAAATAGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (29 bp):
TTTTTGAATTAGTCAATTCTAGTCTTGAC
Found at i:7266601 original size:21 final size:21
Alignment explanation
Indices: 7266575--7266618 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7266565 ACATCAAACG
7266575 CAACTTAG-GTAAATGTCACTT
1 CAACTT-GCGTAAATGTCACTT
* *
7266596 CAACTTGCGTGAATGTTACTT
1 CAACTTGCGTAAATGTCACTT
7266617 CA
1 CA
7266619 TGCAAATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (21 bp):
CAACTTGCGTAAATGTCACTT
Found at i:7272883 original size:13 final size:13
Alignment explanation
Indices: 7272867--7272894 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7272857 GAGAAAGGGG
7272867 AAGAAAAAAGAAA
1 AAGAAAAAAGAAA
7272880 AAGAAAAAAGAAA
1 AAGAAAAAAGAAA
7272893 AA
1 AA
7272895 AAATGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAGAAA
Found at i:7272896 original size:8 final size:7
Alignment explanation
Indices: 7272867--7272895 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
7272857 GAGAAAGGGG
7272867 AAGAAAA
1 AAGAAAA
7272874 AAG-AAA
1 AAGAAAA
7272880 AAGAAAA
1 AAGAAAA
7272887 AAGAAAA
1 AAGAAAA
7272894 AA
1 AA
7272896 AATGTAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAGAAAA
Found at i:7273104 original size:33 final size:32
Alignment explanation
Indices: 7273067--7273169 Score: 83
Period size: 33 Copynumber: 3.3 Consensus size: 32
7273057 TATAACTATT
7273067 TTAAAATTAATTTGTTAGTAACTTAGGATTATG
1 TTAAAATTAATTTGTTAGTAA-TTAGGATTATG
* * *
7273100 TTAAAATT-TTTTG-T-GT--TT-GTAATTATT
1 TTAAAATTAATTTGTTAGTAATTAG-GATTATG
* *
7273127 TTAAAATTAATTTATTAGTAATTTAGGATTAAG
1 TTAAAATTAATTTGTTAGTAA-TTAGGATTATG
7273160 TTATAAATTA
1 TTA-AAATTA
7273170 CTGTGTTTAG
Statistics
Matches: 53, Mismatches: 8, Indels: 17
0.68 0.10 0.22
Matches are distributed among these distances:
26 1 0.02
27 15 0.28
28 3 0.06
29 1 0.02
30 4 0.08
31 1 0.02
32 4 0.08
33 17 0.32
34 7 0.13
ACGTcount: A:0.37, C:0.01, G:0.12, T:0.50
Consensus pattern (32 bp):
TTAAAATTAATTTGTTAGTAATTAGGATTATG
Found at i:7273137 original size:60 final size:62
Alignment explanation
Indices: 7273045--7273168 Score: 180
Period size: 60 Copynumber: 2.0 Consensus size: 62
7273035 TGAATGTAAT
* * *
7273045 TTTTTTGTTTTTTATAACTATTTTAAAATTAATTTGTTAGTAACTTAGGATTATGTTA-AAA
1 TTTTTTGTTGTTTATAACTATTTTAAAATTAATTTATTAGTAACTTAGGATTAAGTTATAAA
* * *
7273106 TTTTTTG-TGTTTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAA
1 TTTTTTGTTGTTTATAACTATTTTAAAATTAATTTATTAGTAACTTAGGATTAAGTTATAAA
7273167 TT
1 TT
7273169 ACTGTGTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
60 44 0.79
61 12 0.21
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (62 bp):
TTTTTTGTTGTTTATAACTATTTTAAAATTAATTTATTAGTAACTTAGGATTAAGTTATAAA
Found at i:7274504 original size:18 final size:18
Alignment explanation
Indices: 7274473--7274510 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7274463 TCCGAAAATA
*
7274473 AAAAAATAACATTTTATTT
1 AAAAAACAACATTTT-TTT
7274492 AAAAAACAA-ATTTTTTT
1 AAAAAACAACATTTTTTT
7274509 AA
1 AA
7274511 TATAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 5 0.28
19 8 0.44
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAAAACAACATTTTTTT
Found at i:7277805 original size:19 final size:20
Alignment explanation
Indices: 7277752--7277805 Score: 51
Period size: 19 Copynumber: 2.7 Consensus size: 20
7277742 AATTTTATAG
*
7277752 TAATAAGAAAGAACCAAAACAA
1 TAATAA-AAAGAA-TAAAACAA
7277774 TAA-AAATAA-AATAAAACAA
1 TAATAAA-AAGAATAAAACAA
7277793 -AATAAAAAGAATA
1 TAATAAAAAGAATA
7277806 GCTTTTACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
18 4 0.14
19 14 0.50
20 3 0.11
21 4 0.14
22 3 0.11
ACGTcount: A:0.74, C:0.07, G:0.06, T:0.13
Consensus pattern (20 bp):
TAATAAAAAGAATAAAACAA
Found at i:7278117 original size:28 final size:28
Alignment explanation
Indices: 7278085--7278144 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
7278075 TTATTATTTC
7278085 AAAATTTATTTGGTGGAACATTAATGTT
1 AAAATTTATTTGGTGGAACATTAATGTT
*
7278113 AAAATTTATTTGGTGGACCATTAATGTT
1 AAAATTTATTTGGTGGAACATTAATGTT
7278141 AAAA
1 AAAA
7278145 CTTGTTATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (28 bp):
AAAATTTATTTGGTGGAACATTAATGTT
Found at i:7279636 original size:21 final size:21
Alignment explanation
Indices: 7279612--7279675 Score: 56
Period size: 25 Copynumber: 2.8 Consensus size: 21
7279602 GGTAAGCTCC
* *
7279612 TTCTTCTTCTTCCTTCTTTCG
1 TTCTTCTTCTTCCTTCTTCCA
7279633 TTCTTCATTCATTTTCCTTCTTCCA
1 TTCTTC-TTC---TTCCTTCTTCCA
*
7279658 TTCTTCATCTTCTCTTCT
1 TTCTTCTTCTTC-CTTCT
7279676 AGGTTTTTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
21 9 0.26
22 8 0.23
24 2 0.06
25 16 0.46
ACGTcount: A:0.06, C:0.33, G:0.02, T:0.59
Consensus pattern (21 bp):
TTCTTCTTCTTCCTTCTTCCA
Found at i:7281015 original size:28 final size:28
Alignment explanation
Indices: 7280984--7281044 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
7280974 TGGGTTTTCA
7280984 GTTTGCTCTCTTTGAGTTCCACTTTCGG
1 GTTTGCTCTCTTTGAGTTCCACTTTCGG
7281012 GTTTGCTCTCTTTGAGTTCCACTTTCGG
1 GTTTGCTCTCTTTGAGTTCCACTTTCGG
7281040 GTTTG
1 GTTTG
7281045 TTCTTCCTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.07, C:0.23, G:0.23, T:0.48
Consensus pattern (28 bp):
GTTTGCTCTCTTTGAGTTCCACTTTCGG
Found at i:7282718 original size:19 final size:19
Alignment explanation
Indices: 7282694--7282730 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7282684 TTCAAACATC
7282694 AGAAAAGTAAATCATTTTT
1 AGAAAAGTAAATCATTTTT
*
7282713 AGAAAAGTAAATTATTTT
1 AGAAAAGTAAATCATTTT
7282731 CCAGAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.38
Consensus pattern (19 bp):
AGAAAAGTAAATCATTTTT
Found at i:7283097 original size:20 final size:21
Alignment explanation
Indices: 7283072--7283111 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7283062 GAATATATTA
7283072 TAATAAAAA-ATATTAAAAAT
1 TAATAAAAATATATTAAAAAT
*
7283092 TAATAAAAATATTTTAAAAA
1 TAATAAAAATATATTAAAAA
7283112 ATATTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
TAATAAAAATATATTAAAAAT
Found at i:7285067 original size:2 final size:2
Alignment explanation
Indices: 7285060--7285103 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
7285050 GAATTATTTG
7285060 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7285102 AT
1 AT
7285104 GACTGAATGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7289680 original size:46 final size:44
Alignment explanation
Indices: 7289621--7289735 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
7289611 ACAGGACAGA
* *
7289621 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
7289667 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
7289711 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
7289736 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:7289716 original size:44 final size:45
Alignment explanation
Indices: 7289621--7289754 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
7289611 ACAGGACAGA
* *
7289621 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
7289667 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
7289711 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7289755 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7295822 original size:46 final size:44
Alignment explanation
Indices: 7295763--7295877 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
7295753 ACAGGACAGA
* *
7295763 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
7295809 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
7295853 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
7295878 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:7295858 original size:44 final size:45
Alignment explanation
Indices: 7295763--7295896 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
7295753 ACAGGACAGA
* *
7295763 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
7295809 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
7295853 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7295897 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7316569 original size:11 final size:11
Alignment explanation
Indices: 7316553--7316585 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
7316543 TTTAATAAAA
7316553 TATTATATTAT
1 TATTATATTAT
7316564 TATTATATTAT
1 TATTATATTAT
7316575 TATTATATTAT
1 TATTATATTAT
7316586 ATCAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTATATTAT
Found at i:7316726 original size:5 final size:5
Alignment explanation
Indices: 7316716--7316761 Score: 92
Period size: 5 Copynumber: 9.2 Consensus size: 5
7316706 TAAAAGATAT
7316716 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA T
7316762 TATAAACATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:7317627 original size:19 final size:19
Alignment explanation
Indices: 7317605--7317664 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 19
7317595 TATATATATA
7317605 TTGAATATATATTGATTAT
1 TTGAATATATATTGATTAT
7317624 TTGAAT-TGA-ATTGA--AT
1 TTGAATAT-ATATTGATTAT
*
7317640 TATGAGTATAT-TTGATTAT
1 T-TGAATATATATTGATTAT
7317659 TTGAAT
1 TTGAAT
7317665 TGAAATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
16 3 0.09
17 9 0.27
18 11 0.33
19 10 0.30
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (19 bp):
TTGAATATATATTGATTAT
Found at i:7325517 original size:25 final size:27
Alignment explanation
Indices: 7325461--7325516 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
7325451 CCTTCTAGCC
7325461 TATACATGCCATACTTTAAAATATATA
1 TATACATGCCATACTTTAAAATATATA
7325488 TATACATGCCATACTTTAAAATATATA
1 TATACATGCCATACTTTAAAATATATA
7325515 TA
1 TA
7325517 CTTTCAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.38
Consensus pattern (27 bp):
TATACATGCCATACTTTAAAATATATA
Found at i:7325998 original size:43 final size:42
Alignment explanation
Indices: 7325950--7326084 Score: 121
Period size: 42 Copynumber: 3.2 Consensus size: 42
7325940 TCCTGGACGT
* * *
7325950 GGTCTTACAAGTAATTCAATATCAATGCCTCTGTCCCAGACAG
1 GGTCTTACACGTAATTCAA-ATCAATGCCTATGTCCCAGACAC
* * * *
7325993 GGTCTTACACG-AAATCAAATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATTCAAAT-CAATGCCTATGTCCCAGACAC
* * * *
7326035 GGTCTTATACGTAAATCTC-AATCAAGGCCTGTGTCTCAGACAC
1 GGTCTTACACGT-AAT-TCAAATCAATGCCTATGTCCCAGACAC
7326078 GGTCTTA
1 GGTCTTA
7326085 TACGATGTCT
Statistics
Matches: 74, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.03
42 33 0.45
43 32 0.43
44 5 0.07
45 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (42 bp):
GGTCTTACACGTAATTCAAATCAATGCCTATGTCCCAGACAC
Found at i:7330172 original size:126 final size:124
Alignment explanation
Indices: 7329946--7330212 Score: 394
Period size: 126 Copynumber: 2.1 Consensus size: 124
7329936 AGCCAAACAT
** * *
7329946 GAACTACTGTAGAAAAAGAGCGTCCTTGTGGGAGTTTTTTTAGAAATTTTATTGACATTGCATCC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTAAAAATTTTACTGACATTGCATCC
* *
7330011 TGCTTGAAGCTTTTTGACATTATTTGTTCGTAAACGTCTTCTTAAAATCATTTTTTCAG
66 TGCTTGAAGCTTTTTGACATCATTTGTTCGTAAACGTCTTCTCAAAATCATTTTTTCAG
* * *
7330070 GAACTACTATAGAAAAAGAGTGTCCACGTGGGAGTTTTTTTTCAAAAATTTTGCTGACATTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAG-TTTTTTT-AAAAATTTTACTGACATTGCAT
*
7330135 CCTGCTTGAAGCGTTTTTGACA-CATTTGTTCAG-AAACGTCTTCTCAAAATTATTTTTTCAG
64 CCTGCTTGAAGC-TTTTTGACATCATTTGTTC-GTAAACGTCTTCTCAAAATCATTTTTTCAG
7330196 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
7330213 CCATAAACAC
Statistics
Matches: 128, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
124 30 0.23
125 7 0.05
126 81 0.63
127 10 0.08
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (124 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTAAAAATTTTACTGACATTGCATCC
TGCTTGAAGCTTTTTGACATCATTTGTTCGTAAACGTCTTCTCAAAATCATTTTTTCAG
Found at i:7330325 original size:35 final size:34
Alignment explanation
Indices: 7330286--7330360 Score: 123
Period size: 35 Copynumber: 2.2 Consensus size: 34
7330276 CTACTAAAAT
7330286 CCTAAACCCTAACTTATTTTAACAAAAACCTAAAC
1 CCTAAACCCTAACTTATTTTAACAAAAACCT-AAC
* *
7330321 CCTAAACCCTAACTTATTTTAGCAAAACCCTAAC
1 CCTAAACCCTAACTTATTTTAACAAAAACCTAAC
7330355 CCTAAA
1 CCTAAA
7330361 AAACCTAGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 9 0.24
35 29 0.76
ACGTcount: A:0.43, C:0.31, G:0.01, T:0.25
Consensus pattern (34 bp):
CCTAAACCCTAACTTATTTTAACAAAAACCTAAC
Found at i:7332634 original size:46 final size:46
Alignment explanation
Indices: 7332581--7332670 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 46
7332571 TGAAGGTCCC
*
7332581 AGTTGACGACCGTTATGTGGTCAAGGGCTCGAATATAACTGGGGCT
1 AGTTGACGACCGTTATGCGGTCAAGGGCTCGAATATAACTGGGGCT
* * * * * *
7332627 AGTTGACGGCCGTTATGCGGTTATGGGTTCGAGTATAATTGGGG
1 AGTTGACGACCGTTATGCGGTCAAGGGCTCGAATATAACTGGGG
7332671 GGCCAGTTGA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.29
Consensus pattern (46 bp):
AGTTGACGACCGTTATGCGGTCAAGGGCTCGAATATAACTGGGGCT
Found at i:7333827 original size:94 final size:94
Alignment explanation
Indices: 7333666--7333853 Score: 297
Period size: 94 Copynumber: 2.0 Consensus size: 94
7333656 ACCGATCCGT
* * *
7333666 GGTTAAAAACGTGTCACAAAATAGGCATTTTTATCAAAAATTTGAAAAAGGTACTTGAAAACATA
1 GGTTAAAAACGTGTCACAAAATAGGCATTTTCATCAAAAATCTGAAAAAGATACTTGAAAACATA
*
7333731 CCCGAGATTCTCGAGCCCAGGGCATCTTA
66 CCCGAGATTCCCGAGCCCAGGGCATCTTA
* *
7333760 GGTTAAAAACGTGTCACAAAATAGGTATTTTCATCGAAAATCT-AAAAGAGATACTTGAAAACAT
1 GGTTAAAAACGTGTCACAAAATAGGCATTTTCATCAAAAATCTGAAAA-AGATACTTGAAAACAT
*
7333824 ACCCGAGATTCCCGAGCCTAGGGCATCTTA
65 ACCCGAGATTCCCGAGCCCAGGGCATCTTA
7333854 CCATAGATGC
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
93 4 0.05
94 82 0.95
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (94 bp):
GGTTAAAAACGTGTCACAAAATAGGCATTTTCATCAAAAATCTGAAAAAGATACTTGAAAACATA
CCCGAGATTCCCGAGCCCAGGGCATCTTA
Found at i:7335770 original size:26 final size:26
Alignment explanation
Indices: 7335738--7335798 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
7335728 AGAAGCTTCG
7335738 AAGAGCCATTAATCAAGAAGCTCACA
1 AAGAGCCATTAATCAAGAAGCTCACA
* * *
7335764 AAGAGCCTTTAATCGAGAAGCTCACG
1 AAGAGCCATTAATCAAGAAGCTCACA
7335790 AAGAGCCAT
1 AAGAGCCAT
7335799 ATAACGGGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.16
Consensus pattern (26 bp):
AAGAGCCATTAATCAAGAAGCTCACA
Found at i:7343893 original size:93 final size:93
Alignment explanation
Indices: 7343781--7343951 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
7343771 GCCCATAAGT
* *
7343781 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7343846 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
7343874 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7343939 CGAGTTCGGATGC
66 CGAGTTCGGATGC
7343952 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:7343948 original size:46 final size:46
Alignment explanation
Indices: 7343773--7343948 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
7343763 TGTAACCCGC
* * *
7343773 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
7343819 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
7343869 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
7343912 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
7343949 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:7346362 original size:30 final size:30
Alignment explanation
Indices: 7346318--7346406 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
7346308 CAAAGATAAC
7346318 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
7346347 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
7346377 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
7346407 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:7346366 original size:15 final size:15
Alignment explanation
Indices: 7346318--7346397 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
7346308 CAAAGATAAC
*
7346318 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
7346332 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
7346347 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
7346362 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
7346377 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
7346392 AAGAAA
1 AAGAAA
7346398 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:7346406 original size:15 final size:15
Alignment explanation
Indices: 7346329--7346406 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
7346319 AGAAAACCGA
7346329 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
7346344 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
7346358 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
7346373 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
7346389 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
7346404 ATA
1 ATA
7346407 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:7349455 original size:93 final size:93
Alignment explanation
Indices: 7349343--7349513 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
7349333 GCCCATAAGT
* *
7349343 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7349408 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
7349436 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7349501 CGAGTTCGGATGC
66 CGAGTTCGGATGC
7349514 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:7349510 original size:46 final size:46
Alignment explanation
Indices: 7349335--7349510 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
7349325 TGTAACCCGC
* * *
7349335 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
7349381 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
7349431 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
7349474 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
7349511 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:7370596 original size:2 final size:2
Alignment explanation
Indices: 7370589--7370675 Score: 165
Period size: 2 Copynumber: 43.5 Consensus size: 2
7370579 GAATTCATTT
*
7370589 AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
7370631 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
7370673 AC A
1 AC A
7370676 TATATATATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 83 1.00
ACGTcount: A:0.51, C:0.48, G:0.00, T:0.01
Consensus pattern (2 bp):
AC
Found at i:7370944 original size:39 final size:39
Alignment explanation
Indices: 7370901--7371070 Score: 250
Period size: 39 Copynumber: 4.3 Consensus size: 39
7370891 GGTCTTTAAC
** *
7370901 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
7370940 CCGGATATATTTCTAGCATATAGCCTGCGGATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
7370979 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
7371018 CCGGATATATTTCTAGCATATAGCCTGCGGACCTTATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
7371057 CCGGATATATTTTC
1 CCGGATAT-TTTTC
7371071 AATCTCATAT
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 113 0.97
40 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.32
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:7371012 original size:78 final size:78
Alignment explanation
Indices: 7370901--7371070 Score: 286
Period size: 78 Copynumber: 2.2 Consensus size: 78
7370891 GGTCTTTAAC
*
7370901 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATATAGCCT
1 CCGGATATTTTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATATAGCCT
*
7370966 GCGGATCTCATGT
66 GCGGACCTCATGT
* *
7370979 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTTCTAGCATATAGCCT
1 CCGGATATTTTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATATAGCCT
*
7371044 GCGGACCTTATGT
66 GCGGACCTCATGT
7371057 CCGGATATATTTTC
1 CCGGATAT-TTTTC
7371071 AATCTCATAT
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
78 81 0.94
79 5 0.06
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.32
Consensus pattern (78 bp):
CCGGATATTTTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATATAGCCT
GCGGACCTCATGT
Found at i:7374070 original size:7 final size:6
Alignment explanation
Indices: 7374054--7374115 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
7374044 TTTGAGTCCA
*
7374054 TTTATTT TTTATCT TTTATT TTT-TGT TTT-TT TTTATT TTTATT TTTA-G
1 TTTA-TT TTTAT-T TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT
*
7374102 TTTATG TTTATT TT
1 TTTATT TTTATT TT
7374116 AAAGACTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
5 9 0.18
6 30 0.61
7 10 0.20
ACGTcount: A:0.13, C:0.02, G:0.05, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:7374093 original size:23 final size:23
Alignment explanation
Indices: 7374058--7374115 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
7374048 AGTCCATTTA
*
7374058 TTTTTTATCTTTTATTTTTTGTTT
1 TTTTTTAT-TTTTATTTTTAGTTT
7374082 TTTTTTATTTTTATTTTTAGTTT
1 TTTTTTATTTTTATTTTTAGTTT
* *
7374105 ATGTTTATTTT
1 TTTTTTATTTT
7374116 AAAGACTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
23 23 0.74
24 8 0.26
ACGTcount: A:0.12, C:0.02, G:0.05, T:0.81
Consensus pattern (23 bp):
TTTTTTATTTTTATTTTTAGTTT
Found at i:7374099 original size:17 final size:17
Alignment explanation
Indices: 7374067--7374115 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
7374057 ATTTTTTATC
*
7374067 TTTTATTTTT-TGTTTTT
1 TTTTATTTTTAT-TTTTA
7374084 TTTTATTTTTATTTTTA
1 TTTTATTTTTATTTTTA
* *
7374101 GTTTATGTTTATTTT
1 TTTTATTTTTATTTT
7374116 AAAGACTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 27 0.96
18 1 0.04
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (17 bp):
TTTTATTTTTATTTTTA
Found at i:7382351 original size:46 final size:44
Alignment explanation
Indices: 7382292--7382406 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
7382282 ACAGGACAGA
* *
7382292 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
7382338 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
7382382 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
7382407 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:7382387 original size:44 final size:45
Alignment explanation
Indices: 7382292--7382425 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
7382282 ACAGGACAGA
* *
7382292 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
7382338 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
7382382 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7382426 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7388499 original size:46 final size:44
Alignment explanation
Indices: 7388440--7388554 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
7388430 ACAGGACAGA
* *
7388440 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
7388486 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
7388530 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
7388555 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:7388535 original size:44 final size:45
Alignment explanation
Indices: 7388440--7388573 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
7388430 ACAGGACAGA
* *
7388440 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
7388486 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
7388530 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7388574 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7390458 original size:39 final size:39
Alignment explanation
Indices: 7390412--7390510 Score: 153
Period size: 39 Copynumber: 2.5 Consensus size: 39
7390402 TCTGATGAGA
*
7390412 TTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGTGC
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
* *
7390451 TTCAGTTATCCTTCGGGCTTTCGTTTAGCACTTATGTGC
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
* *
7390490 TTCAGCTAGACTTCGGGCTTC
1 TTCAGTTAGCCTTCGGGCTTC
7390511 AGATCACGAT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.39
Consensus pattern (39 bp):
TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
Found at i:7398378 original size:18 final size:18
Alignment explanation
Indices: 7398355--7398419 Score: 51
Period size: 18 Copynumber: 3.5 Consensus size: 18
7398345 CAGCTCTGAT
7398355 GAGCTTCAGTTAGCCTTC
1 GAGCTTCAGTTAGCCTTC
*
7398373 GAGCTTC-GTTTAGCGCTTAT
1 GAGCTTCAG-TTAGC-CTT-C
* * *
7398393 GTGCTTCAGCTAGACTTC
1 GAGCTTCAGTTAGCCTTC
*
7398411 GGGCTTCAG
1 GAGCTTCAG
7398420 ATCATGATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
17 1 0.03
18 20 0.54
19 6 0.16
20 9 0.24
21 1 0.03
ACGTcount: A:0.15, C:0.25, G:0.26, T:0.34
Consensus pattern (18 bp):
GAGCTTCAGTTAGCCTTC
Found at i:7401546 original size:15 final size:16
Alignment explanation
Indices: 7401522--7401605 Score: 63
Period size: 15 Copynumber: 5.4 Consensus size: 16
7401512 TAATAATAAT
7401522 AAAAAGAAAGGAAAGG
1 AAAAAGAAAGGAAAGG
7401538 AAAAA-AAAGGAAAGG
1 AAAAAGAAAGGAAAGG
7401553 --AAAGAAA-GAAA-G
1 AAAAAGAAAGGAAAGG
* *
7401565 AAACAGAGAAGGTTAAATG
1 AAAAAGA-AAGG--AAAGG
*
7401584 AAATAGAAA-GAAAGAG
1 AAAAAGAAAGGAAAG-G
7401600 AAAAAG
1 AAAAAG
7401606 GAGAAAAAGG
Statistics
Matches: 55, Mismatches: 4, Indels: 18
0.71 0.05 0.23
Matches are distributed among these distances:
12 1 0.02
13 7 0.13
14 7 0.13
15 15 0.27
16 12 0.22
17 1 0.02
18 5 0.09
19 7 0.13
ACGTcount: A:0.68, C:0.01, G:0.26, T:0.05
Consensus pattern (16 bp):
AAAAAGAAAGGAAAGG
Found at i:7402311 original size:24 final size:24
Alignment explanation
Indices: 7402284--7402331 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
7402274 ATTAAAATGG
7402284 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
7402308 ATTGAATTTATATTGATTGAATTT
1 ATTGAATTTATATTGATTGAATTT
7402332 GTTATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 3 0.14
24 14 0.64
25 5 0.23
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:7402816 original size:24 final size:24
Alignment explanation
Indices: 7402770--7402816 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7402760 AAATATGCAA
*
7402770 ATGAAATGCATGAATTATGTGTTC
1 ATGAAATGCATAAATTATGTGTTC
*
7402794 ATGAAATGGATAATATTAT-TGTT
1 ATGAAATGCATAA-ATTATGTGTT
7402817 ATTTGATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.40
Consensus pattern (24 bp):
ATGAAATGCATAAATTATGTGTTC
Found at i:7409791 original size:20 final size:19
Alignment explanation
Indices: 7409766--7409838 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 19
7409756 AACTATCCAA
7409766 AAAAATTATGAAAAAAATT
1 AAAAATTATGAAAAAAATT
* *
7409785 CAAAAATCATAAAAAAAATT
1 -AAAAATTATGAAAAAAATT
***
7409805 -AAAATTATTTCAAAAATT
1 AAAAATTATGAAAAAAATT
7409823 AGAAAATTA-GAAAAAA
1 A-AAAATTATGAAAAAA
7409839 TTAGAAAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
18 14 0.33
19 4 0.10
20 24 0.57
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (19 bp):
AAAAATTATGAAAAAAATT
Found at i:7409840 original size:10 final size:10
Alignment explanation
Indices: 7409816--7409849 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
7409806 AAATTATTTC
7409816 AAAAATTAG-
1 AAAAATTAGA
7409825 -AAAATTAGA
1 AAAAATTAGA
7409834 AAAAATTAGA
1 AAAAATTAGA
7409844 AAAAAT
1 AAAAAT
7409850 ATATAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.35
10 15 0.65
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (10 bp):
AAAAATTAGA
Found at i:7410732 original size:9 final size:10
Alignment explanation
Indices: 7410720--7410765 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
7410710 AAATTTAAAA
7410720 TTTT-AACTT
1 TTTTAAACTT
7410729 TTTTAGAACTT
1 TTTTA-AACTT
*
7410740 TTTTAAAATT
1 TTTTAAACTT
*
7410750 TTTTGAA-TT
1 TTTTAAACTT
7410759 TTTTAAA
1 TTTTAAA
7410766 AAATATAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 12 0.38
10 10 0.31
11 10 0.31
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (10 bp):
TTTTAAACTT
Found at i:7410740 original size:11 final size:11
Alignment explanation
Indices: 7410724--7410763 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
7410714 TTAAAATTTT
7410724 AACTTTTTTAG
1 AACTTTTTTAG
7410735 AACTTTTTTA-
1 AACTTTTTTAG
*
7410745 AAATTTTTT-G
1 AACTTTTTTAG
7410755 AA-TTTTTTA
1 AACTTTTTTA
7410764 AAAAATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (11 bp):
AACTTTTTTAG
Found at i:7410745 original size:20 final size:18
Alignment explanation
Indices: 7410720--7410765 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 18
7410710 AAATTTAAAA
*
7410720 TTTTAACTTTTTTAGAACTT
1 TTTTAAATTTTTT-GAA-TT
7410740 TTTTAAAATTTTTTGAATT
1 TTTT-AAATTTTTTGAATT
7410759 TTTTAAA
1 TTTTAAA
7410766 AAATATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.12
19 6 0.25
20 7 0.29
21 8 0.33
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (18 bp):
TTTTAAATTTTTTGAATT
Found at i:7410774 original size:28 final size:28
Alignment explanation
Indices: 7410743--7410816 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 28
7410733 AGAACTTTTT
7410743 TAAAATTTTTTGAATTTTTTAAAAA-ATA
1 TAAAA-TTTTTGAATTTTTTAAAAATATA
* *
7410771 TAAAA-TTTGGAA-TTTTTAAAAATTATT
1 TAAAATTTTTGAATTTTTTAAAAA-TATA
*
7410798 TTAAATTTTTGAATTTTTT
1 TAAAATTTTTGAATTTTTT
7410817 TATTAGAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 10 0.26
26 6 0.16
27 6 0.16
28 11 0.29
29 5 0.13
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (28 bp):
TAAAATTTTTGAATTTTTTAAAAATATA
Found at i:7410929 original size:17 final size:18
Alignment explanation
Indices: 7410896--7410930 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7410886 TATTTGAATC
*
7410896 ATTTAAGTTATTAAAATT
1 ATTTAAATTATTAAAATT
7410914 ATTTAAATTA-TAAAATT
1 ATTTAAATTATTAAAATT
7410931 TAATTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
ATTTAAATTATTAAAATT
Found at i:7413550 original size:2 final size:2
Alignment explanation
Indices: 7413543--7413574 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7413533 CAACTCCAAA
7413543 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7413575 TCCCAAGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7414836 original size:20 final size:19
Alignment explanation
Indices: 7414813--7414852 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
7414803 TATTTGCATG
*
7414813 CATTTTAATATATTTTTAAA
1 CATTATAATATA-TTTTAAA
*
7414833 CATTATATTATATTTTAAA
1 CATTATAATATATTTTAAA
7414852 C
1 C
7414853 TTAATGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (19 bp):
CATTATAATATATTTTAAA
Found at i:7437044 original size:27 final size:24
Alignment explanation
Indices: 7437014--7437081 Score: 73
Period size: 27 Copynumber: 2.6 Consensus size: 24
7437004 AGAATATAAA
7437014 AATTAGATTAATTTATATTTAATGTAT
1 AATTAGATTAATTTAT-TTTAA--TAT
* *
7437041 AATTACATTAAATTATTTTAATAT
1 AATTAGATTAATTTATTTTAATAT
7437065 AATTAGTATTATATTTA
1 AATTAG-ATTA-ATTTA
7437082 AGTTTCTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 8 0.23
25 4 0.11
26 9 0.26
27 14 0.40
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (24 bp):
AATTAGATTAATTTATTTTAATAT
Found at i:7440692 original size:31 final size:31
Alignment explanation
Indices: 7440648--7440726 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
7440638 AAGGGTAAAT
* * * *
7440648 TTTTATTTTAGTCACTTAACTATTT-GAAAG
1 TTTTATTTAAGTCACTGAACTATTTAAAAAA
*
7440678 TTTTCATTTAAGTCACTGAATTATTTAAAAAA
1 TTTT-ATTTAAGTCACTGAACTATTTAAAAAA
*
7440710 ATTTATTTAAGTCACTG
1 TTTTATTTAAGTCACTG
7440727 GGCGGTTAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 4 0.10
31 31 0.76
32 6 0.15
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (31 bp):
TTTTATTTAAGTCACTGAACTATTTAAAAAA
Found at i:7443602 original size:24 final size:23
Alignment explanation
Indices: 7443558--7443620 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 23
7443548 AGGCTTATAT
*
7443558 TTTAAATATGTATATTTATAATAAAA
1 TTTAAA-AT-TATATTAATAAT-AAA
*
7443584 TTTAAAATTATATTAATAATTAA
1 TTTAAAATTATATTAATAATAAA
7443607 TTATAAAAATTATA
1 TT-T-AAAATTATA
7443621 ACTAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 4 0.12
24 12 0.36
25 11 0.33
26 6 0.18
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
TTTAAAATTATATTAATAATAAA
Found at i:7445315 original size:21 final size:21
Alignment explanation
Indices: 7445276--7445316 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7445266 CCCTGTCTTA
**
7445276 GGTCTCGAGACATGCAAACTG
1 GGTCTCGAGACATAAAAACTG
*
7445297 GGTCTTGAGACATAAAAACT
1 GGTCTCGAGACATAAAAACT
7445317 TCGAAGCTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (21 bp):
GGTCTCGAGACATAAAAACTG
Found at i:7451114 original size:22 final size:23
Alignment explanation
Indices: 7451081--7451123 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
7451071 TTTTATGGTT
7451081 ATTTTAATTTTTTACTTAATACC
1 ATTTTAATTTTTTACTTAATACC
*
7451104 ATTTT-ATTTTTTATTTAATA
1 ATTTTAATTTTTTACTTAATA
7451124 AACTTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (23 bp):
ATTTTAATTTTTTACTTAATACC
Found at i:7455106 original size:22 final size:22
Alignment explanation
Indices: 7455055--7455115 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
7455045 ATAAGTAAAT
* *
7455055 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
7455076 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
7455098 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
7455116 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:7455249 original size:36 final size:36
Alignment explanation
Indices: 7455207--7455298 Score: 109
Period size: 36 Copynumber: 2.6 Consensus size: 36
7455197 AAAGTAGTGC
*
7455207 TAATAATAATAATAATAATAATGATGATCTATTA-A
1 TAATAATAATAATAATAATAATGATGATATATTAGA
* *
7455242 GTTATAATGAA-AATAATGATAATGATGATATATTAGA
1 -TAATAAT-AATAATAATAATAATGATGATATATTAGA
*
7455279 TAATAATAGTAA-AATAATAA
1 TAATAATAATAATAATAATAA
7455299 GTAACAATGA
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
35 8 0.17
36 36 0.77
37 3 0.06
ACGTcount: A:0.54, C:0.01, G:0.10, T:0.35
Consensus pattern (36 bp):
TAATAATAATAATAATAATAATGATGATATATTAGA
Found at i:7455344 original size:16 final size:16
Alignment explanation
Indices: 7455323--7455354 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7455313 TTATAATAAT
7455323 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
7455339 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
7455355 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:7455487 original size:16 final size:15
Alignment explanation
Indices: 7455458--7455500 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
7455448 TATACGTATG
*
7455458 AAAAATAATGATAGT
1 AAAAATAATAATAGT
7455473 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
7455489 AATAATAATAAT
1 AAAAATAATAAT
7455501 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:7455603 original size:3 final size:3
Alignment explanation
Indices: 7455595--7455628 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
7455585 ACACTACCAT
7455595 ATA ATA ATA ATA ATA ATAA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA
7455629 TAGAAATACA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7455618 original size:16 final size:16
Alignment explanation
Indices: 7455597--7455628 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7455587 ACTACCATAT
7455597 AATAATAATAATAATA
1 AATAATAATAATAATA
7455613 AATAATAATAATAATA
1 AATAATAATAATAATA
7455629 TAGAAATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AATAATAATAATAATA
Found at i:7455730 original size:3 final size:3
Alignment explanation
Indices: 7455722--7455759 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
7455712 AAATATACAC
7455722 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7455760 TTAAAATGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7456254 original size:31 final size:30
Alignment explanation
Indices: 7456216--7456292 Score: 106
Period size: 28 Copynumber: 2.6 Consensus size: 30
7456206 GATTTTTTGT
7456216 TCTTGAATCTCAAAAAAAAAGAAAAATCCCC
1 TCTTGAATCTCAAAAAAAAA-AAAAATCCCC
* *
7456247 TCTTGAATCTC--AAAAAAAAAAAATCTCT
1 TCTTGAATCTCAAAAAAAAAAAAAATCCCC
7456275 TCTTGAATCT-AAAAAAAA
1 TCTTGAATCTCAAAAAAAA
7456293 TTCTTCTCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
28 18 0.43
29 13 0.31
31 11 0.26
ACGTcount: A:0.52, C:0.18, G:0.05, T:0.25
Consensus pattern (30 bp):
TCTTGAATCTCAAAAAAAAAAAAAATCCCC
Found at i:7456488 original size:1 final size:1
Alignment explanation
Indices: 7456482--7456516 Score: 61
Period size: 1 Copynumber: 35.0 Consensus size: 1
7456472 TGAGATTAGG
*
7456482 TTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7456517 GGGTTGGGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.03, C:0.00, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:7457780 original size:204 final size:205
Alignment explanation
Indices: 7456820--7458222 Score: 2483
Period size: 205 Copynumber: 6.9 Consensus size: 205
7456810 AGATTTATTT
* * * * * * * *
7456820 CTTCGATTTGATCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
** * * * * *
7456885 GCGAAAGCCAAATCAACTATG-ATTCGATTTGTTCCTTGTAAGCATAAGGATGCCAATCCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * * *
7456949 GGATCCGCTTCAGC-ATAAACATCCGAAGGTGAGATTTGCTATGTGTCTGCTCTCCATCAAAGTG
131 GGATCTGCTTCAGCGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
7457013 AAGATGCCAAA
195 AAGATGCCAAA
7457024 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
7457089 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
7457154 GGATCTGCTTTAGCGAAATCATCTGAAGGTGAGATCTGCTATATGTCTGCTCTCCATCAAAGTGA
131 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
7457219 AGATGCCAAA
196 AGATGCCAAA
7457229 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
7457294 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
7457359 GGATCTGCTTTAGCGAAATCATCTGAAGGTGAGATCTGCTATATGTCTGCTCTCCATCAAAGTGA
131 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
7457424 AGATGCCAAA
196 AGATGCCAAA
7457434 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
7457499 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
7457564 GGATCCGCTTCAGC-ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
131 GGATCTGCTTCAGCGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
7457628 AAGATGCCAAA
195 AAGATGCCAAA
7457639 CTT-GATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
7457703 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
7457768 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
7457833 AGATGCCAAA
196 AGATGCCAAA
* *
7457843 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCATAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
7457908 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
7457973 GGATCTGCTT-AGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
7458037 AGATGCCAAA
196 AGATGCCAAA
7458047 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
7458112 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
7458177 GGATCTGCTTCAGTGAAATCGTCTGAAGGCGAGATCTGCTATGTGT
131 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGT
7458223 AGCCTATTAC
Statistics
Matches: 1159, Mismatches: 34, Indels: 11
0.96 0.03 0.01
Matches are distributed among these distances:
204 478 0.41
205 680 0.59
206 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (205 bp):
CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
AGATGCCAAA
Found at i:7457869 original size:409 final size:409
Alignment explanation
Indices: 7456820--7458222 Score: 2481
Period size: 409 Copynumber: 3.4 Consensus size: 409
7456810 AGATTTATTT
* * * * * * * *
7456820 CTTCGATTTGATCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
** * * * * *
7456885 GCGAAAGCCAAATCAACTATG-ATTCGATTTGTTCCTTGTAAGCATAAGGATGCCAATCCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * * *
7456949 GGATCCGCTTCAGC-ATAAACATCCGAAGGTGAGATTTGCTATGTGTCTGCTCTCCATCAAAGTG
131 GGATCTGCTTCAGCGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
7457013 AAGATGCCAAACTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTC
195 AAGATGCCAAACTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTC
7457078 ATCGTAATCACATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGC
260 ATCGTAATCACATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGC
*
7457143 CAAACCATCTTGGATCTGCTTTAGCGAAATCATCTGAAGGTGAGATCTGCTATATGTCTGCTCTC
325 CAAACCATCTTGGATCTGC-TTAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTC
7457208 CATCAAAGTGAAGATGCCAAA
389 CATCAAAGTGAAGATGCCAAA
7457229 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
7457294 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
7457359 GGATCTGCTTTAGCGAAATCATCTGAAGGTGAGATCTGCTATATGTCTGCTCTCCATCAAAGTGA
131 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
7457424 AGATGCCAAACTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCA
196 AGATGCCAAACTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCA
7457489 TCGTAATCACATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCC
261 TCGTAATCACATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCC
* *
7457554 AAACCATCTTGGATCCGCTTCAGC-ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTC
326 AAACCATCTTGGATCTGCTT-AGCGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTC
7457618 CATCAAAGTGAAGATGCCAAA
389 CATCAAAGTGAAGATGCCAAA
7457639 CTT-GATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
7457703 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
7457768 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
*
7457833 AGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCA
196 AGATGCCAAACTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCA
*
7457898 TCATAATCACATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCC
261 TCGTAATCACATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCC
7457963 AAACCATCTTGGATCTGCTTAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCA
326 AAACCATCTTGGATCTGCTTAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCA
7458028 TCAAAGTGAAGATGCCAAA
391 TCAAAGTGAAGATGCCAAA
7458047 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
7458112 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
7458177 GGATCTGCTTCAGTGAAATCGTCTGAAGGCGAGATCTGCTATGTGT
131 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGT
7458223 AGCCTATTAC
Statistics
Matches: 955, Mismatches: 33, Indels: 12
0.95 0.03 0.01
Matches are distributed among these distances:
408 64 0.07
409 584 0.61
410 306 0.32
411 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (409 bp):
CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
AGATGCCAAACTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCA
TCGTAATCACATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCC
AAACCATCTTGGATCTGCTTAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCA
TCAAAGTGAAGATGCCAAA
Found at i:7470873 original size:15 final size:14
Alignment explanation
Indices: 7470831--7470880 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
7470821 ATAACTTTGA
*
7470831 ATGCAAATGATGTG
1 ATGCAAATGATGAG
7470845 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
7470860 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
7470874 ATGCAAA
1 ATGCAAA
7470881 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:7474724 original size:22 final size:22
Alignment explanation
Indices: 7474673--7474733 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
7474663 ATAAGTAAAT
* *
7474673 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
7474694 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
7474716 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
7474734 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:7474833 original size:3 final size:3
Alignment explanation
Indices: 7474825--7474849 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7474815 AAAGTAGTGC
7474825 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
7474850 GATGATCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7474870 original size:36 final size:36
Alignment explanation
Indices: 7474827--7474919 Score: 111
Period size: 36 Copynumber: 2.6 Consensus size: 36
7474817 AGTAGTGCTA
*
7474827 ATAATAATAATAATAATAATAATGATGATCTATTA-
1 ATAATAATAATAATAATAATAATGATGATATATTAG
* *
7474862 AGTTATAATGAA-AATAATGATAATGATGATATATTAG
1 A-TAATAAT-AATAATAATAATAATGATGATATATTAG
*
7474899 ATAATAATAGTAA-AATAATAA
1 ATAATAATAATAATAATAATAA
7474920 GTAACAATGA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
35 9 0.19
36 36 0.75
37 3 0.06
ACGTcount: A:0.55, C:0.01, G:0.10, T:0.34
Consensus pattern (36 bp):
ATAATAATAATAATAATAATAATGATGATATATTAG
Found at i:7474965 original size:16 final size:16
Alignment explanation
Indices: 7474944--7474975 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7474934 TTATAATAAT
7474944 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
7474960 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
7474976 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:7475108 original size:16 final size:15
Alignment explanation
Indices: 7475079--7475121 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
7475069 TATACGTATG
*
7475079 AAAAATAATGATAGT
1 AAAAATAATAATAGT
7475094 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
7475110 AATAATAATAAT
1 AAAAATAATAAT
7475122 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:7475224 original size:3 final size:3
Alignment explanation
Indices: 7475216--7475248 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7475206 ACACTACCAT
7475216 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7475249 TAGAAATACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7475350 original size:3 final size:3
Alignment explanation
Indices: 7475342--7475376 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7475332 AAATATACAC
7475342 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7475377 TTAAAATGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7475886 original size:27 final size:27
Alignment explanation
Indices: 7475847--7475910 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 27
7475837 TGAATCTCAA
7475847 AAAAAAAGAAAAATCCCCTCTTGAATCT
1 AAAAAAA-AAAAATCCCCTCTTGAATCT
* *
7475875 AAAAAAAAAAAATCTCTTCTTGAATCT
1 AAAAAAAAAAAATCCCCTCTTGAATCT
*
7475902 CAAAAAAAA
1 AAAAAAAAA
7475911 TTCTTCTCTC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 26 0.79
28 7 0.21
ACGTcount: A:0.56, C:0.17, G:0.05, T:0.22
Consensus pattern (27 bp):
AAAAAAAAAAAATCCCCTCTTGAATCT
Found at i:7476479 original size:21 final size:20
Alignment explanation
Indices: 7476455--7476506 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
7476445 TTATGCTACA
7476455 TCAGTATTCTTATCCTAAATT
1 TCAGTATT-TTATCCTAAATT
* *
7476476 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTAAATT
*
7476496 TTAGTATTTTA
1 TCAGTATTTTA
7476507 ATTTGGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCTAAATT
Found at i:7488212 original size:3 final size:3
Alignment explanation
Indices: 7488204--7488233 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7488194 ATAAAGTACA
7488204 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7488234 TTTACATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7490045 original size:2 final size:2
Alignment explanation
Indices: 7490038--7490062 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7490028 TATAAATAAT
7490038 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7490063 TTTAAACAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7490609 original size:31 final size:33
Alignment explanation
Indices: 7490557--7490619 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 33
7490547 TTTTATAATT
*
7490557 AAAATTATTATAAAATTTTTAAAA-AAACTATAG
1 AAAATTATTATAAAATATTTAAAATAAA-TATAG
7490590 AAAATTA-TA-AAAATATTTAAAATAAATATA
1 AAAATTATTATAAAATATTTAAAATAAATATA
7490620 TATATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 16 0.57
32 5 0.18
33 7 0.25
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (33 bp):
AAAATTATTATAAAATATTTAAAATAAATATAG
Found at i:7490766 original size:69 final size:69
Alignment explanation
Indices: 7490636--7490771 Score: 165
Period size: 70 Copynumber: 2.0 Consensus size: 69
7490626 TATATATAAG
7490636 TGCAAAAAAGTTATAAAAATTATTATAAATCAAAAAAAAAATTATATACATTATAAAAATTGTTA
1 TGCAAAAAAGTTATAAAAATTATTATAAATCAAAAAAAAAATTATATACATTATAAAAATTG-TA
7490701 AAAAA
65 AAAAA
* * *
7490706 TGCAAAAAAGCTT-TAAAATTTTATTA-AAAT-AACAAAAAAAA-TATATATA-TATATATAATT
1 TGCAAAAAAG-TTATAAAA-ATTATTATAAATCAA-AAAAAAAATTATATACATTATA-AAAATT
7490766 GTAAAA
62 GTAAAA
7490772 TATATTAAAC
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
68 9 0.15
69 15 0.25
70 27 0.46
71 8 0.14
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (69 bp):
TGCAAAAAAGTTATAAAAATTATTATAAATCAAAAAAAAAATTATATACATTATAAAAATTGTAA
AAAA
Found at i:7490808 original size:19 final size:20
Alignment explanation
Indices: 7490786--7490839 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
7490776 TTAAACTTTT
7490786 TAAAATATTAAAAATT-TAA
1 TAAAATATTAAAAATTATAA
* *
7490805 TAAAAT-TTTAAAATTATTA
1 TAAAATATTAAAAATTATAA
*
7490824 TAAAAATATTATAAAT
1 T-AAAATATTAAAAAT
7490840 GACTCAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 8 0.29
19 9 0.32
20 5 0.18
21 6 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAAATATTAAAAATTATAA
Found at i:7490808 original size:28 final size:29
Alignment explanation
Indices: 7490767--7490838 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 29
7490757 TATATAATTG
* *
7490767 TAAAATATATTAAACTTTTTAAAA-TATTA
1 TAAAATATAATAAA-ATTTTAAAATTATTA
*
7490796 -AAAATTTAATAAAATTTTAAAATTATTA
1 TAAAATATAATAAAATTTTAAAATTATTA
*
7490824 TAAAAATATTATAAA
1 T-AAAATATAATAAA
7490839 TGACTCAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
27 8 0.23
28 16 0.46
30 11 0.31
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (29 bp):
TAAAATATAATAAAATTTTAAAATTATTA
Found at i:7490827 original size:11 final size:10
Alignment explanation
Indices: 7490786--7490838 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
7490776 TTAAACTTTT
7490786 TAAAATATTA
1 TAAAATATTA
7490796 -AAAAT-TTAA
1 TAAAATATT-A
7490805 TAAAAT-TT-
1 TAAAATATTA
7490813 TAAAATTATTA
1 TAAAA-TATTA
7490824 TAAAAATATTA
1 T-AAAATATTA
7490835 TAAA
1 TAAA
7490839 TGACTCAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
8 7 0.19
9 7 0.19
10 12 0.32
11 7 0.19
12 4 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
TAAAATATTA
Found at i:7490914 original size:20 final size:20
Alignment explanation
Indices: 7490889--7490926 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7490879 TTTACAATAA
7490889 AAAATTTGTAAAAA-ATATGG
1 AAAATTT-TAAAAACATATGG
7490909 AAAATTTTAAAAACATAT
1 AAAATTTTAAAAACATAT
7490927 AAAATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (20 bp):
AAAATTTTAAAAACATATGG
Found at i:7491005 original size:31 final size:30
Alignment explanation
Indices: 7490937--7491016 Score: 94
Period size: 31 Copynumber: 2.7 Consensus size: 30
7490927 AAAATTATTT
7490937 AAAAT-ATTATTAAAA-TATAGAAAAGTGA
1 AAAATAATTATTAAAATTATAGAAAAGTGA
* *
7490965 AAAAAAATTATTAAAAATTATAGAAAA-TTA
1 AAAATAATTATT-AAAATTATAGAAAAGTGA
7490995 CAAAATAATTATTCAAAATTAT
1 -AAAATAATTATT-AAAATTAT
7491017 TCAATAAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
28 4 0.09
29 6 0.14
30 6 0.14
31 28 0.64
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (30 bp):
AAAATAATTATTAAAATTATAGAAAAGTGA
Found at i:7491020 original size:10 final size:10
Alignment explanation
Indices: 7490967--7491017 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
7490957 AAAAGTGAAA
7490967 AAAAATTATT
1 AAAAATTATT
7490977 AAAAATTA-T
1 AAAAATTATT
**
7490986 AGAAAATTACA
1 A-AAAATTATT
7490997 AAATAATTATT
1 AAA-AATTATT
*
7491008 CAAAATTATT
1 AAAAATTATT
7491018 CAATAAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 2 0.06
10 24 0.71
11 8 0.24
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (10 bp):
AAAAATTATT
Found at i:7491048 original size:43 final size:41
Alignment explanation
Indices: 7490968--7491049 Score: 101
Period size: 43 Copynumber: 2.0 Consensus size: 41
7490958 AAAGTGAAAA
* * *
7490968 AAAATTATTAAAAATTATAGAAAATTACAAAATAATTATTC
1 AAAATTATTAAAAATAACAGAAAATTACAAAAAAATTATTC
**
7491009 AAAATTATTCAATAAATAACAGAAAATTTTAAAAAAATTAT
1 AAAATTATT-AA-AAATAACAGAAAATTACAAAAAAATTAT
7491050 ATAACATTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 9 0.26
42 2 0.06
43 23 0.68
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (41 bp):
AAAATTATTAAAAATAACAGAAAATTACAAAAAAATTATTC
Found at i:7491310 original size:18 final size:17
Alignment explanation
Indices: 7491283--7491316 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7491273 TTTTTTATAT
*
7491283 TTTTTCTTATATATTTA
1 TTTTTCTTATAAATTTA
7491300 TTTTTCATTATAAATTT
1 TTTTTC-TTATAAATTT
7491317 TACGTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTTCTTATAAATTTA
Found at i:7491426 original size:8 final size:8
Alignment explanation
Indices: 7491410--7491480 Score: 51
Period size: 7 Copynumber: 9.0 Consensus size: 8
7491400 TTGTAATTCA
7491410 TATATTTT
1 TATATTTT
7491418 TATAATTTT
1 TAT-ATTTT
7491427 TAT-TTTT
1 TATATTTT
7491434 T-TATTTT
1 TATATTTT
*
7491441 TTTATTTT
1 TATATTTT
*
7491449 TCATAATTTA
1 T-AT-ATTTT
*
7491459 CATATTTT
1 TATATTTT
*
7491467 CAT-TTTT
1 TATATTTT
7491474 T-TATTTT
1 TATATTTT
7491481 AAATAATTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
6 2 0.04
7 18 0.35
8 17 0.33
9 11 0.21
10 4 0.08
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (8 bp):
TATATTTT
Found at i:7491432 original size:15 final size:15
Alignment explanation
Indices: 7491412--7491457 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
7491402 GTAATTCATA
7491412 TATTTTTATAATTTT
1 TATTTTTATAATTTT
* *
7491427 TATTTTTTTATTTTTT
1 TATTTTTATA-ATTTT
7491443 TATTTTTCATAATTT
1 TATTTTT-ATAATTT
7491458 ACATATTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
15 9 0.36
16 14 0.56
17 2 0.08
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (15 bp):
TATTTTTATAATTTT
Found at i:7491434 original size:17 final size:17
Alignment explanation
Indices: 7491388--7491449 Score: 63
Period size: 17 Copynumber: 3.7 Consensus size: 17
7491378 TAATTTTTTC
* *
7491388 ATTTTTTTTTTTTTGTA
1 ATTTTTATTTTTTTATA
** *
7491405 ATTCATATATTTTTATA
1 ATTTTTATTTTTTTATA
7491422 ATTTTTATTTTTTTAT-
1 ATTTTTATTTTTTTATA
*
7491438 TTTTTTATTTTT
1 ATTTTTATTTTT
7491450 CATAATTTAC
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
16 11 0.31
17 25 0.69
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (17 bp):
ATTTTTATTTTTTTATA
Found at i:7491455 original size:32 final size:31
Alignment explanation
Indices: 7491412--7491490 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 31
7491402 GTAATTCATA
* * *
7491412 TATTTTTATAATTTTTATTTTTTTATTTTTT
1 TATTTTTATAATTTTCATATTTTCATTTTTT
*
7491443 TATTTTTCATAATTTACATATTTTCATTTTTT
1 TATTTTT-ATAATTTTCATATTTTCATTTTTT
*
7491475 TATTTTAAATAATTTT
1 TATTTT-TATAATTTT
7491491 AATGCTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 7 0.17
32 33 0.82
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (31 bp):
TATTTTTATAATTTTCATATTTTCATTTTTT
Found at i:7491602 original size:27 final size:27
Alignment explanation
Indices: 7491563--7491620 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
7491553 TTTTATATTT
* *
7491563 TTTTTTTGCACTTTTATATATTTTACAA
1 TTTTTTTGAACTTTAATAT-TTTTACAA
*
7491591 TTTTTTT-AACTTTAATATTTTTATAA
1 TTTTTTTGAACTTTAATATTTTTACAA
7491617 TTTT
1 TTTT
7491621 AATATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 11 0.41
27 9 0.33
28 7 0.26
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.66
Consensus pattern (27 bp):
TTTTTTTGAACTTTAATATTTTTACAA
Found at i:7491610 original size:17 final size:17
Alignment explanation
Indices: 7491590--7491633 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
7491580 ATATTTTACA
7491590 ATTTTTTTAACTTTAAT
1 ATTTTTTTAACTTTAAT
* *
7491607 ATTTTTATAATTTTAAT
1 ATTTTTTTAACTTTAAT
7491624 ATATTTTTTA
1 AT-TTTTTTA
7491634 TGATTATCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTTTTAACTTTAAT
Found at i:7491631 original size:11 final size:10
Alignment explanation
Indices: 7491601--7491671 Score: 55
Period size: 9 Copynumber: 7.4 Consensus size: 10
7491591 TTTTTTTAAC
7491601 TTTA-ATATT
1 TTTATATATT
7491610 TTTATA-ATT
1 TTTATATATT
*
7491619 TTAATATATT
1 TTTATATATT
7491629 TTT-TATGATT
1 TTTATAT-ATT
*
7491639 ATCTATA-ATT
1 -TTTATATATT
7491649 TTT-TATAGTT
1 TTTATATA-TT
7491659 TTTAT-TATT
1 TTTATATATT
7491668 TTTA
1 TTTA
7491672 GTAATTTTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
8 2 0.04
9 24 0.48
10 19 0.38
11 3 0.06
12 2 0.04
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (10 bp):
TTTATATATT
Done.