Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 280 of 433
Found at i:87166358 original size:29 final size:29
Alignment explanation
Indices: 87166304--87166398 Score: 95
Period size: 29 Copynumber: 3.3 Consensus size: 29
87166294 ATTGGCATTG
* *
87166304 AGTGTGCGAGCTTGTAAT-GTACGGCACTA
1 AGTGTGCGAGCTTG-AATCATATGGCACTA
* *
87166333 AGTGTGCGAGTTTGGA-CTATATGGCACTA
1 AGTGTGCGAGCTTGAATC-ATATGGCACTA
* * *
87166362 TGTGTGTGGGCTTGAATCATATGGCACTA
1 AGTGTGCGAGCTTGAATCATATGGCACTA
87166391 AGTGTGCG
1 AGTGTGCG
87166399 TGATTGAGTA
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
28 1 0.02
29 50 0.96
30 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.31
Consensus pattern (29 bp):
AGTGTGCGAGCTTGAATCATATGGCACTA
Found at i:87175146 original size:87 final size:87
Alignment explanation
Indices: 87175055--87175311 Score: 331
Period size: 87 Copynumber: 2.9 Consensus size: 87
87175045 CAGATTGAAG
* * * *
87175055 ATTTACAGAT-TGCAACCCCCTAAGCAGTAGGGAAGCAGATTGAAGATGATGAGTCTTAAAACCC
1 ATTTACAGATCT-TAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCC
87175119 TAAGCAGTAGGGTAACAGACTAA
65 TAAGCAGTAGGGTAACAGACTAA
* * *
87175142 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGAACCTTAAACCCCT
1 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
* *
87175207 AAGCAGTAGGGTAACAGATTGA
66 AAGCAGTAGGGTAACAGACTAA
* * * **
87175229 TTTTACAAGATCTTAAACCCCTAAGCAGTAGGGAAACAGA-TCAATGATGACAAGCCTT-AACCC
1 ATTTAC-AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAA-GATGATGAGCCTTAAACCC
87175292 CTTAAGCAGTAGGGTAACAG
64 C-TAAGCAGTAGGGTAACAG
87175312 GTTGAAAATC
Statistics
Matches: 149, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
87 89 0.60
88 60 0.40
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (87 bp):
ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
AAGCAGTAGGGTAACAGACTAA
Found at i:87175215 original size:44 final size:44
Alignment explanation
Indices: 87175071--87175311 Score: 190
Period size: 44 Copynumber: 5.5 Consensus size: 44
87175061 AGATTGCAAC
* * * *
87175071 CCCCTAAGCAGTAGGGAAGCAGATTGAAGATGATGAGTCTTAAA
1 CCCCTAAGCAGTAGGGAAACAGATCGAAGTTGATGAATCTTAAA
* * * * * * *
87175115 ACCCTAAGCAGTAGGGTAACAGA-CTAAATTTA-CAGATCTTAAC
1 CCCCTAAGCAGTAGGGAAACAGATCGAAGTTGATGA-ATCTTAAA
* *
87175158 CCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGAACCTTAAA
1 CCCCTAAGCAGTAGGGAAACAGATCGAAGTTGATGAATCTTAAA
* * * * **
87175202 CCCCTAAGCAGTAGGGTAACAGATTG-ATTTTACAAGATCTTAAA
1 CCCCTAAGCAGTAGGGAAACAGATCGAAGTTGATGA-ATCTTAAA
*
87175246 CCCCTAAGCAGTAGGGAAACAGATC-AA--TGATGACAAGCCTT-AA
1 CCCCTAAGCAGTAGGGAAACAGATCGAAGTTGATG--AA-TCTTAAA
*
87175289 CCCCTTAAGCAGTAGGGTAACAG
1 CCCC-TAAGCAGTAGGGAAACAG
87175312 GTTGAAAATC
Statistics
Matches: 153, Mismatches: 35, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
42 3 0.02
43 42 0.27
44 107 0.70
45 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (44 bp):
CCCCTAAGCAGTAGGGAAACAGATCGAAGTTGATGAATCTTAAA
Found at i:87175417 original size:68 final size:68
Alignment explanation
Indices: 87175327--87175596 Score: 443
Period size: 68 Copynumber: 4.0 Consensus size: 68
87175317 AAATCAAATA
*
87175327 TCTTCTCCCTGAAAT-GCGTTGGAGCGGCTAAAAGCCACAGTAGATCTCCTTGAAGTTTCAGTGG
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
87175391 ATC
66 ATC
* *
87175394 TCTTTTCCCTGAAGTGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
87175459 ATC
66 ATC
* ** *
87175462 TCTTCTCCCTGATATGGCGTTGGAGCGGCTAAAAGCCACAATAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
*
87175527 AGC
66 ATC
* *
87175530 TCTTCTCCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATTTCCTTGAAGTTTCAGTGG
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
87175595 AT
66 AT
87175597 TAATCGAAGC
Statistics
Matches: 185, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
67 13 0.07
68 172 0.93
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (68 bp):
TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
ATC
Found at i:87175624 original size:41 final size:42
Alignment explanation
Indices: 87175562--87175647 Score: 138
Period size: 41 Copynumber: 2.1 Consensus size: 42
87175552 GAGCAGCTAA
*
87175562 AAGCCACAGCAGATTTCCTTGAAGTTTCAGTGG-ATTAATCG
1 AAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTAATCG
* *
87175603 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTAATTG
1 AAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTAATCG
87175645 AAG
1 AAG
87175648 TCACGTGTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 31 0.76
42 10 0.24
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (42 bp):
AAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTAATCG
Found at i:87176044 original size:13 final size:13
Alignment explanation
Indices: 87176028--87176087 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 13
87176018 ACCACCCTTG
87176028 TTGGCCACCCACC
1 TTGGCCACCCACC
*
87176041 TTGGCCACCTA-C
1 TTGGCCACCCACC
*** ***
87176053 TCCACCACCCTTG
1 TTGGCCACCCACC
87176066 TTGGCCACCCACC
1 TTGGCCACCCACC
87176079 TTGGCCACC
1 TTGGCCACC
87176088 TAAACCACCC
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
12 7 0.21
13 26 0.79
ACGTcount: A:0.15, C:0.50, G:0.15, T:0.20
Consensus pattern (13 bp):
TTGGCCACCCACC
Found at i:87176096 original size:38 final size:38
Alignment explanation
Indices: 87176007--87176089 Score: 166
Period size: 38 Copynumber: 2.2 Consensus size: 38
87175997 AACCCTAATC
87176007 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
87176045 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
87176083 CCACCTA
1 CCACCTA
87176090 AACCACCCCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.17, C:0.51, G:0.12, T:0.20
Consensus pattern (38 bp):
CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
Found at i:87176514 original size:3 final size:3
Alignment explanation
Indices: 87176503--87176585 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
87176493 TTTTATTTTT
* *
87176503 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
87176546 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
87176586 ATATGCCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.11
3 49 0.75
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:87176560 original size:21 final size:18
Alignment explanation
Indices: 87176507--87176589 Score: 87
Period size: 18 Copynumber: 4.4 Consensus size: 18
87176497 ATTTTTTTAT
* *
87176507 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
87176526 TTTATATTATTATTATTA
1 TTTATATTATTATTATTA
*
87176544 TTTCTCATGTATATATTATTA
1 TTTAT-AT-TAT-TATTATTA
87176565 TTTATATTATTATTA-TA
1 TTTATATTATTATTATTA
87176582 TTATATAT
1 TT-TATAT
87176590 GCCCTCTCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.46
19 9 0.16
20 5 0.09
21 12 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:87178290 original size:10 final size:10
Alignment explanation
Indices: 87178275--87178320 Score: 58
Period size: 10 Copynumber: 4.5 Consensus size: 10
87178265 ATTTTTTTTA
87178275 AAAAAATTAT
1 AAAAAATTAT
87178285 AAAAAATATAT
1 AAAAAAT-TAT
*
87178296 AAAGAAATTAA
1 AAA-AAATTAT
87178307 AAAAAATTA-
1 AAAAAATTAT
87178316 AAAAA
1 AAAAA
87178321 TTCTAGAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.39
11 11 0.33
12 4 0.12
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:87179935 original size:21 final size:21
Alignment explanation
Indices: 87179911--87179956 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
87179901 TTAGGATTGC
87179911 TTTACTATGATTAGATTTATT
1 TTTACTATGATTAGATTTATT
87179932 TTTACTATGATTAGATTTATT
1 TTTACTATGATTAGATTTATT
87179953 TTTA
1 TTTA
87179957 GTATATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.59
Consensus pattern (21 bp):
TTTACTATGATTAGATTTATT
Found at i:87184474 original size:38 final size:38
Alignment explanation
Indices: 87184423--87184525 Score: 116
Period size: 38 Copynumber: 2.7 Consensus size: 38
87184413 AAGTTATATC
* ** * *
87184423 GTTATTTAGGCTTTGTGCCTAGTAGGCCTAGTGTCGGT
1 GTTATTCAGGCTTTGTGCCTAGTAGGCCTACCGCCGAT
* * *
87184461 GTTATTCAGGCTTTATGCCTAGAAGGCTTACCGCCGAT
1 GTTATTCAGGCTTTGTGCCTAGTAGGCCTACCGCCGAT
* *
87184499 GTTAGTCAGGCTTAGTGCCTAGTAGGC
1 GTTATTCAGGCTTTGTGCCTAGTAGGC
87184526 TTATTATCGG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.17, C:0.19, G:0.29, T:0.34
Consensus pattern (38 bp):
GTTATTCAGGCTTTGTGCCTAGTAGGCCTACCGCCGAT
Found at i:87190415 original size:15 final size:15
Alignment explanation
Indices: 87190362--87190423 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
87190352 GTTGTAATTG
*
87190362 TTATTATTATTATTC
1 TTATCATTATTATTC
* *
87190377 CTATTCTTTATTATT-
1 TTA-TCATTATTATTC
*
87190392 TTATTATTATTATTC
1 TTATCATTATTATTC
* *
87190407 TTGTCATTATTAGTC
1 TTATCATTATTATTC
87190422 TT
1 TT
87190424 TTTATTTATG
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
14 9 0.25
15 18 0.50
16 9 0.25
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.65
Consensus pattern (15 bp):
TTATCATTATTATTC
Found at i:87191995 original size:6 final size:6
Alignment explanation
Indices: 87191980--87192027 Score: 78
Period size: 6 Copynumber: 8.0 Consensus size: 6
87191970 ATTGAGTCTA
* *
87191980 TTTATC TTTATT TTTATT TTTATT TTTATT TTTATT TTTATG TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
87192028 ATGTTTTCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:87192253 original size:19 final size:21
Alignment explanation
Indices: 87192229--87192269 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
87192219 TCTCCCTACC
87192229 TTATGA-TAT-TTTGTTTGTA
1 TTATGATTATATTTGTTTGTA
87192248 TTATGATTTATATTTGTTTGTA
1 TTATGA-TTATATTTGTTTGTA
87192270 CATTGAGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
21 3 0.16
22 10 0.53
ACGTcount: A:0.22, C:0.00, G:0.15, T:0.63
Consensus pattern (21 bp):
TTATGATTATATTTGTTTGTA
Found at i:87200881 original size:38 final size:38
Alignment explanation
Indices: 87200830--87200907 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
87200820 CATTTCATAA
*
87200830 ATTTAACTATACCAACAATTTCACATTCATGAAAGACT
1 ATTTAACTATACCAACAATTTCACATTCATAAAAGACT
*
87200868 ATTTAACTATACCAACAATTTCACATTCGTAAAAGACT
1 ATTTAACTATACCAACAATTTCACATTCATAAAAGACT
87200906 AT
1 AT
87200908 CTTGCATTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.32
Consensus pattern (38 bp):
ATTTAACTATACCAACAATTTCACATTCATAAAAGACT
Found at i:87206643 original size:31 final size:31
Alignment explanation
Indices: 87206596--87206665 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
87206586 ATACTGGGTT
*
87206596 GAAGCC-TTTCATAATTCATAA-CACTAGGTC
1 GAAGCCTTTTCAAAATTCA-AATCACTAGGTC
87206626 GAAGCCTTTTCAAAATTCAAATCACTAGGTC
1 GAAGCCTTTTCAAAATTCAAATCACTAGGTC
87206657 GAAGCCTTT
1 GAAGCCTTT
87206666 ACTGTAAGCG
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
30 8 0.22
31 29 0.78
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (31 bp):
GAAGCCTTTTCAAAATTCAAATCACTAGGTC
Found at i:87206904 original size:24 final size:25
Alignment explanation
Indices: 87206877--87206954 Score: 86
Period size: 25 Copynumber: 3.2 Consensus size: 25
87206867 GCCTAGCCTC
*
87206877 TTTTAAT-AATTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
87206901 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*** * *
87206926 TTTCGGTAAACTAGGACAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
87206951 TTTT
1 TTTT
87206955 GCACTTCCTC
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
24 6 0.13
25 40 0.87
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:87206921 original size:25 final size:25
Alignment explanation
Indices: 87206887--87206955 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
87206877 TTTTAATAAT
87206887 TGGGGCAAAGCCCTTTTTGATAAAC
1 TGGGGCAAAGCCCTTTTTGATAAAC
* *
87206912 TGGGGCAAAGCCCTTTTCGGTAAAC
1 TGGGGCAAAGCCCTTTTTGATAAAC
* *
87206937 TAGGACAAAGCCCTTTTTG
1 TGGGGCAAAGCCCTTTTTG
87206956 CACTTCCTCC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTTGATAAAC
Found at i:87207026 original size:21 final size:21
Alignment explanation
Indices: 87207001--87207051 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
87206991 TATAATGAGT
*
87207001 ATATCATGTGCATCTCATAAC
1 ATATCATGTGCATATCATAAC
**
87207022 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATAAC
87207043 ATATCATGT
1 ATATCATGT
87207052 ATATCAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:87211638 original size:49 final size:48
Alignment explanation
Indices: 87211577--87211764 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 48
87211567 TGAGGTCACG
* *
87211577 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCGAATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCG-ATAATTGGTCGCA
* * * * * * *
87211626 TGTGTAGTACTAAGCGCAGGATACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGATAA-TT-GGTCGCA
*
87211677 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GATAATTGGTCGCA
* *
87211726 TGTGTAGTACTAAGTGCAGGCTATTATGTGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GATA
87211765 GCTTTGGCTA
Statistics
Matches: 114, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
49 69 0.61
50 9 0.08
51 36 0.32
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGTCGCA
Found at i:87211745 original size:100 final size:100
Alignment explanation
Indices: 87211572--87211764 Score: 305
Period size: 100 Copynumber: 1.9 Consensus size: 100
87211562 TATTGTGAGG
*
87211572 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGAATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
*
87211637 AAGCGCAGGATACTATGCGTACCCGATAACTTCGA
66 AAGCGCAGGATACTATGCGTACCAGATAACTTCGA
** *
87211672 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
* * * *
87211737 AAGTGCAGGCTATTATGTGTACCAGATA
66 AAGCGCAGGATACTATGCGTACCAGATA
87211765 GCTTTGGCTA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
AAGCGCAGGATACTATGCGTACCAGATAACTTCGA
Found at i:87221147 original size:40 final size:40
Alignment explanation
Indices: 87221092--87221313 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
87221082 TATTCGAATG
* *
87221092 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
87221132 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
87221172 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
87221212 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
87221252 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
87221292 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
87221314 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 152 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:87227788 original size:66 final size:68
Alignment explanation
Indices: 87227714--87227900 Score: 227
Period size: 71 Copynumber: 2.7 Consensus size: 68
87227704 TAGTACCACT
*
87227714 CATGCGACCCAAC-CGATTTGTC-T-CGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCCAACAC-ATTTATCTTACGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGAAT
87227776 CACG
65 CACG
* * *
87227780 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCCAAC-ACATTTATC-TT-ACGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGA
87227845 ATCACG
63 ATCACG
* * *
87227851 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCCAAC-ACATTTATC-TT-ACGTAGCTATCTTGTCTACATGG
87227901 GATACATCTC
Statistics
Matches: 111, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
66 11 0.10
67 6 0.05
68 1 0.01
69 1 0.01
71 92 0.83
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (68 bp):
CATGCGACCCAACACATTTATCTTACGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:87227822 original size:71 final size:71
Alignment explanation
Indices: 87227737--87227900 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
87227727 CGATTTGTCT
*
87227737 CGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
87227802 CTTTCA
66 CTTTCA
87227808 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
87227873 CTTTCA
66 CTTTCA
87227879 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
87227901 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:87227938 original size:71 final size:70
Alignment explanation
Indices: 87227737--87227934 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
87227727 CGATTTGTCT
* * * * *
87227737 CGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
87227802 CTTTCA
65 CTTTCA
* * * *
87227808 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
87227873 CTTTCA
65 CTTTCA
* *
87227879 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
87227935 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:87235396 original size:71 final size:71
Alignment explanation
Indices: 87235312--87235475 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
87235302 CGATTTGTCT
87235312 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
87235377 CTTTCA
66 CTTTCA
87235383 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
87235448 CTTTCA
66 CTTTCA
87235454 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
87235476 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:87235513 original size:71 final size:70
Alignment explanation
Indices: 87235312--87235509 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
87235302 CGATTTGTCT
* * * *
87235312 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
87235377 CTTTCA
65 CTTTCA
* * * *
87235383 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
87235448 CTTTCA
65 CTTTCA
* *
87235454 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
87235510 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:87239912 original size:40 final size:40
Alignment explanation
Indices: 87239857--87240077 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
87239847 TATTCGAATG
* *
87239857 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
87239897 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
87239937 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
87239976 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
87240016 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
87240056 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
87240078 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 52 0.31
40 112 0.67
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:87239989 original size:79 final size:80
Alignment explanation
Indices: 87239857--87240077 Score: 340
Period size: 79 Copynumber: 2.8 Consensus size: 80
87239847 TATTCGAATG
* *
87239857 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
*
87239922 TTTGTGCTATTGATT
66 TTTGTGCTATTGACT
*
87239937 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
87240001 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* * * *
87240016 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTATATCCGGGCTAAGTCCCGAAGG
87240078 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
79 90 0.69
80 39 0.30
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACT
Found at i:87244500 original size:26 final size:26
Alignment explanation
Indices: 87244471--87244524 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
87244461 TCTAGCAAGA
*
87244471 GTTTTCCCGTTGAGTCTACCGAAATT
1 GTTTGCCCGTTGAGTCTACCGAAATT
87244497 GTTTGCCCGTTGAGTCTACCGAAATT
1 GTTTGCCCGTTGAGTCTACCGAAATT
87244523 GT
1 GT
87244525 GATTAAAGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTTGCCCGTTGAGTCTACCGAAATT
Found at i:87253477 original size:49 final size:49
Alignment explanation
Indices: 87253408--87253755 Score: 653
Period size: 49 Copynumber: 7.1 Consensus size: 49
87253398 GTACATAATA
*
87253408 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
87253457 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
87253506 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
87253555 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAA-TGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
*
87253603 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
* *
87253652 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
87253701 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
87253750 ATATAT
1 ATATAT
87253756 ATGTGGTAAA
Statistics
Matches: 293, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
48 47 0.16
49 246 0.84
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
Found at i:87253879 original size:37 final size:36
Alignment explanation
Indices: 87253824--87253910 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
87253814 AACTTGGAAA
87253824 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
87253862 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
87253899 TATGTCCGGGTA
1 TATGTCCGGGTA
87253911 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:87255867 original size:39 final size:40
Alignment explanation
Indices: 87255790--87256098 Score: 453
Period size: 40 Copynumber: 7.8 Consensus size: 40
87255780 GAGAATTGAG
87255790 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
87255830 AATGATGTATCCGGACTAAGTT-CGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
87255869 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
87255909 AATGATATAT-CGGGCTAAATTCCAAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
87255948 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
87255988 AGTGATGTATCCGGACTAAGTTCCGAAGAG-ATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
87256027 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
87256067 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCA
87256099 ATCATGCTGG
Statistics
Matches: 254, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
39 113 0.44
40 141 0.56
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (40 bp):
AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:87255893 original size:79 final size:80
Alignment explanation
Indices: 87255790--87256098 Score: 453
Period size: 79 Copynumber: 3.9 Consensus size: 80
87255780 GAGAATTGAG
* *
87255790 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTT-CG
1 AATGATATATCCGGACTAAATTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTTCCG
87255854 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * * *
87255869 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATATAT-CGGGCTAAATTCCA
1 AATGATATATCCGGACTAAATTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTTCCG
87255933 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* *
87255948 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AATGATATATCCGGACTAAATTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTTCCG
87256013 AAGAG-ATTCGTGCT
66 AAGAGCATTCGTGCT
* * * * * * *
87256027 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCG
1 AATGATATATCCGGACTAAATTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTTCCG
87256092 AAGAGCA
66 AAGAGCA
87256099 ATCATGCTGG
Statistics
Matches: 208, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
78 9 0.04
79 182 0.88
80 17 0.08
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (80 bp):
AATGATATATCCGGACTAAATTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCT
Found at i:87259719 original size:49 final size:49
Alignment explanation
Indices: 87259650--87259940 Score: 438
Period size: 49 Copynumber: 6.1 Consensus size: 49
87259640 GTACATAATA
* *
87259650 ATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
87259699 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
87259748 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
* *
87259797 ATATATGTGATAAGGCCTAATGGCCGACATGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
87259846 ATATATGTGATAAGG-C--AT------TGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
* *
87259886 ATATATGTGATAAGGCCTAATGGCAGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
87259935 ATATAT
1 ATATAT
87259941 ATGTGGTAAA
Statistics
Matches: 224, Mismatches: 9, Indels: 18
0.89 0.04 0.07
Matches are distributed among these distances:
40 34 0.15
41 1 0.00
43 2 0.01
46 2 0.01
48 1 0.00
49 184 0.82
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
Found at i:87259885 original size:40 final size:40
Alignment explanation
Indices: 87259826--87259901 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
87259816 ATGGCCGACA
*
87259826 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCATTG
1 TGATGAATGTGAAAATGTATATATATGTGATAAGGCATTG
87259866 TGATGAATGTGAAAATGTATATATATGTGATAAGGC
1 TGATGAATGTGAAAATGTATATATATGTGATAAGGC
87259902 CTAATGGCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (40 bp):
TGATGAATGTGAAAATGTATATATATGTGATAAGGCATTG
Found at i:87259959 original size:51 final size:49
Alignment explanation
Indices: 87259865--87259960 Score: 138
Period size: 51 Copynumber: 1.9 Consensus size: 49
87259855 ATAAGGCATT
* *
87259865 GTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCAGAC
1 GTGATGAATGTGAAAATGTATATATATGTGATAAAGCCGAATGGCAGAC
* *
87259914 GTGATGAATGTGAAAGTGTATATATATATGTGGTAAAGCCGAATGGC
1 GTGATGAATGTGAAAATG--TATATATATGTGATAAAGCCGAATGGC
87259961 TAATGTGAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
49 17 0.41
51 24 0.59
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.29
Consensus pattern (49 bp):
GTGATGAATGTGAAAATGTATATATATGTGATAAAGCCGAATGGCAGAC
Found at i:87259985 original size:89 final size:92
Alignment explanation
Indices: 87259672--87259973 Score: 327
Period size: 89 Copynumber: 3.3 Consensus size: 92
87259662 AGGCCTAATC
*
87259672 GCCG-ATGTGATGAATGTGAAAATG-TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 GCCGAATGTGATGAATGTG--AATGTTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
* * *
87259735 TGTGAAAATGTATATATATGTGATAAGGCCTAATG
64 TGTGAAAGTGTATATATATATG-T--GG--TAA-A
* * *
87259770 GCCG-ACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACATGATGAAT
1 GCCGAATGTGATGAATGTGAATGT-TATATATATGTGATAAGGCCTAATGGCCGACGTGATGAAT
*
87259834 GTGAAAGTG--TATATATATGTGAT-AA
65 GTGAAAGTGTATATATATATGTGGTAAA
* * *
87259859 GGC-ATTGTGATGAATGTGAAAATG-TATATATATGTGATAAGGCCTAATGGCAGACGTGATGAA
1 GCCGAATGTGATGAATGTG--AATGTTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
87259922 TGTGAAAGTGTATATATATATGTGGTAAA
64 TGTGAAAGTGTATATATATATGTGGTAAA
*
87259951 GCCGAATG-GCT-AATGTGAATGTT
1 GCCGAATGTGATGAATGTGAATGTT
87259974 GTAACATGTG
Statistics
Matches: 176, Mismatches: 18, Indels: 28
0.79 0.08 0.13
Matches are distributed among these distances:
89 65 0.37
90 2 0.01
91 23 0.13
92 6 0.03
93 4 0.02
95 1 0.01
96 12 0.07
98 63 0.36
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.30
Consensus pattern (92 bp):
GCCGAATGTGATGAATGTGAATGTTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
TGAAAGTGTATATATATATGTGGTAAA
Found at i:87260064 original size:37 final size:36
Alignment explanation
Indices: 87260009--87260095 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
87259999 AACTTGGAAA
*
87260009 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGCGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
87260047 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
87260084 TATGTCCGGGTA
1 TATGTCCGGGTA
87260096 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.20, C:0.21, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:87263248 original size:38 final size:38
Alignment explanation
Indices: 87263032--87263256 Score: 261
Period size: 38 Copynumber: 5.9 Consensus size: 38
87263022 AGTTATACCA
* * *
87263032 TTATTCAGACTTTGAGCCTAGCAGGCATAGTGCCGGTG
1 TTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTG
* * ** *
87263070 TTGTTCAGGCTTTGTGCCTGGCAACCATAGTGCCGGTG
1 TTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTG
* * *
87263108 TTGTTCAGGCTTTTTGCCTAGCAGGCTTAGTGCCAGTG
1 TTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTG
* * *
87263146 TTATTCAGGCTTTGTGCCTAGTAGGCTTAATGTCGGTG
1 TTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTG
* * * *
87263184 TTACTCAAGCTTTGTGCCTTGCAGGCTTAGTGCTGGTG
1 TTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTG
* * *
87263222 TTATTCAGGCTTAGTGCCTAGTAGGCTTATTGCCG
1 TTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCG
87263257 ATGTAATTAA
Statistics
Matches: 155, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 155 1.00
ACGTcount: A:0.16, C:0.20, G:0.29, T:0.35
Consensus pattern (38 bp):
TTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTG
Found at i:87264977 original size:15 final size:15
Alignment explanation
Indices: 87264957--87264986 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
87264947 AAGAGTAAAG
87264957 AAATTGAATAAAAAT
1 AAATTGAATAAAAAT
*
87264972 AAATTGAATATAAAT
1 AAATTGAATAAAAAT
87264987 CATTTTCGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAATTGAATAAAAAT
Found at i:87267604 original size:21 final size:21
Alignment explanation
Indices: 87267579--87267621 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
87267569 AATGTGATTA
87267579 TGATAATTTTTGAAATGTAAG
1 TGATAATTTTTGAAATGTAAG
87267600 TGATAATTTTTGAAATGTAAG
1 TGATAATTTTTGAAATGTAAG
87267621 T
1 T
87267622 TCAAATGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (21 bp):
TGATAATTTTTGAAATGTAAG
Found at i:87275643 original size:7 final size:7
Alignment explanation
Indices: 87275631--87275656 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
87275621 CCTAGATGAA
87275631 TTGGGCT
1 TTGGGCT
87275638 TTGGGCT
1 TTGGGCT
87275645 TTGGGCT
1 TTGGGCT
87275652 TTGGG
1 TTGGG
87275657 TTTCATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.46, T:0.42
Consensus pattern (7 bp):
TTGGGCT
Found at i:87277195 original size:29 final size:29
Alignment explanation
Indices: 87277147--87277224 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
87277137 TGAATATAAT
*
87277147 GTGAATTGGGCATAATGGGCCACATAAAA
1 GTGAATTGGGCCTAATGGGCCACATAAAA
* * *
87277176 GT-AATTTGGGCCTAAAGGGCCATATAAAT
1 GTGAA-TTGGGCCTAATGGGCCACATAAAA
87277205 GTGAATTGGGCCTAATGGGC
1 GTGAATTGGGCCTAATGGGC
87277225 TATGTGAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 2 0.05
29 38 0.90
30 2 0.05
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.24
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCACATAAAA
Found at i:87292073 original size:26 final size:26
Alignment explanation
Indices: 87292044--87292151 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
87292034 TGGTTCAAAT
87292044 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87292070 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87292096 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87292122 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87292148 TGAT
1 TGAT
87292152 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87297282 original size:27 final size:26
Alignment explanation
Indices: 87297253--87297357 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 26
87297243 GCTGCCAGAA
* *
87297253 CAGATAATGTGACAGAGTCACCAAAT
1 CAGATAATGTGGCAGAGCCACCAAAT
*
87297279 ACAGATAATCGTGGCAGTGCCACCAGAAT
1 -CAGATAAT-GTGGCAGAGCCACCA-AAT
*
87297308 -AGATATATGTGGCAGAGCCACCAGAT
1 CAGATA-ATGTGGCAGAGCCACCAAAT
*
87297334 CAGATAATTGTGGCATAGCCACCA
1 CAGATAA-TGTGGCAGAGCCACCA
87297358 GGACGCTTCC
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
26 3 0.04
27 47 0.70
28 14 0.21
29 3 0.04
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATAATGTGGCAGAGCCACCAAAT
Found at i:87297312 original size:54 final size:54
Alignment explanation
Indices: 87297247--87297358 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
87297237 AGCATGGCTG
*
87297247 CCAGAACAGATA-ATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGT-GCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAAT-CAGATAATCGTGGCA-TAGCCA
* * * *
87297301 CCAGAATAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCATAGCCA
87297355 CCAG
1 CCAG
87297359 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.65
55 17 0.33
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCATAGCCA
Found at i:87298824 original size:24 final size:24
Alignment explanation
Indices: 87298789--87298865 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
87298779 CCAACACTGT
*
87298789 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
87298813 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* * *
87298837 TCTTCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
87298861 TCTCC
1 TCTCC
87298866 TAACAACCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.21, C:0.42, G:0.04, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:87299896 original size:137 final size:137
Alignment explanation
Indices: 87299449--87299935 Score: 742
Period size: 137 Copynumber: 3.5 Consensus size: 137
87299439 TTAACCGTAG
* * * *
87299449 ATATAATTAATATATGAAGTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTATAAATATTTTACCGAATTTATT
*
87299514 AATATAAACAATTATATTAATTAATTTCGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
66 AATATAAACAATTATATTAATTAATTTCGTCAAAATATAAAAGACATGAAAATTAATATTCTTTT
87299579 GGAAAGA
131 GGAAAGA
* * * *
87299586 ATATAATTAATATATGAATTTGAGTCATACAAAATATTAATAAAAATATATTTTACTGAATTTAT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTATAA-ATATTTTACCGAATTTAT
* * *
87299651 TAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGAAAATTTATATTCTT
65 TAATATAAACAATTATATTAATTAA-TTTCGTCAAAATATAAAAGACATGAAAATTAATATTCTT
87299716 TTGGAAAGA
129 TTGGAAAGA
** **
87299725 ATATAATTAATATATGAATTTGATTCATTTAAAATATTAATGGTAAATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTATAAATATTTTACCGAATTTATT
* *
87299790 AATATAAACAATTATATTAATTAATTTCAGTCAAAATA-AAAATACATGAAAATTAATATACTTT
66 AATATAAACAATTATATTAATTAATTTC-GTCAAAATATAAAAGACATGAAAATTAATATTCTTT
87299854 TGGAAAGA
130 TGGAAAGA
* * * *
87299862 ATATAATTAATATACGAATTCGATTCATACAAAATATTAATTATATATATATTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTATAAATATTTTACCGAATTTATT
87299927 AATATAAAC
66 AATATAAAC
87299936 CAAAGGCCTT
Statistics
Matches: 316, Mismatches: 31, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
137 140 0.44
138 91 0.29
139 85 0.27
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (137 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTATAAATATTTTACCGAATTTATT
AATATAAACAATTATATTAATTAATTTCGTCAAAATATAAAAGACATGAAAATTAATATTCTTTT
GGAAAGA
Found at i:87304956 original size:24 final size:24
Alignment explanation
Indices: 87304912--87304957 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
87304902 TTATATGAAA
*
87304912 ATATACTCATTGAGATTTAATTTC
1 ATATACTCATTCAGATTTAATTTC
*
87304936 ATAT-CTCATTCAGCTTGTAATT
1 ATATACTCATTCAGATT-TAATT
87304958 AAATTTATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.30, C:0.15, G:0.09, T:0.46
Consensus pattern (24 bp):
ATATACTCATTCAGATTTAATTTC
Found at i:87307548 original size:39 final size:40
Alignment explanation
Indices: 87307481--87307628 Score: 129
Period size: 40 Copynumber: 3.7 Consensus size: 40
87307471 TATGGTAACC
* * * * * ** *
87307481 CGCACCAAGGCCTACGGGACTTAACCCGGATATCACGATT
1 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACT
* *
87307521 TGCA-AAATGCCTTCGGGTCTTAGCCCGGATAGAATGACT
1 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACT
* * *
87307560 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACT
1 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AACGACT
* * *
87307600 AGCACAATTGCCTTCGGGTCTTAACCCGG
1 CGCACAAATGCCTTCGGGTCTTAGCCCGG
87307629 TTATAATTTC
Statistics
Matches: 87, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 30 0.34
40 57 0.66
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (40 bp):
CGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACT
Found at i:87323341 original size:80 final size:80
Alignment explanation
Indices: 87323257--87323405 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
87323247 TATGGTAACC
* * * *
87323257 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
87323321 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
87323337 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
87323402 CCGG
66 CCGG
87323406 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:87323347 original size:40 final size:38
Alignment explanation
Indices: 87323298--87323405 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
87323288 ATCACGATTT
*
87323298 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
87323338 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
87323378 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
87323406 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:87331453 original size:80 final size:80
Alignment explanation
Indices: 87331369--87331517 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
87331359 TATGGTAACC
* * * *
87331369 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
87331433 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
87331449 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
87331514 CCGG
66 CCGG
87331518 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:87331459 original size:40 final size:38
Alignment explanation
Indices: 87331410--87331517 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
87331400 ATCACGATTT
*
87331410 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
87331450 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
87331490 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
87331518 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:87344088 original size:31 final size:31
Alignment explanation
Indices: 87344053--87344116 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
87344043 CCTTTTCATA
*
87344053 TTTCATACTTCATAATACTAGGCCGAAGCCT
1 TTTCAAACTTCATAATACTAGGCCGAAGCCT
* * * **
87344084 TTTCAAATTTCATATTACTTGGTGGAAGCCT
1 TTTCAAACTTCATAATACTAGGCCGAAGCCT
87344115 TT
1 TT
87344117 ACTGTTAACG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCAAACTTCATAATACTAGGCCGAAGCCT
Found at i:87344390 original size:23 final size:23
Alignment explanation
Indices: 87344330--87344444 Score: 194
Period size: 23 Copynumber: 5.0 Consensus size: 23
87344320 CCTAGCCTGT
* *
87344330 TTTAATAACTAGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87344353 TTCTAATAACTGGGGCATAAGCCC
1 TT-TAATAACTGGGGCATAAGCCC
*
87344377 TTTAATAACAGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87344400 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87344423 TTTAATAACTGGGGCATAAGCC
1 TTTAATAACTGGGGCATAAGCC
87344445 TTTTTTCACT
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
23 66 0.76
24 21 0.24
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:87344525 original size:20 final size:20
Alignment explanation
Indices: 87344500--87344538 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
87344490 TATGATTACA
87344500 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
87344520 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
87344539 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:87344544 original size:20 final size:20
Alignment explanation
Indices: 87344501--87344545 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
87344491 ATGATTACAT
**
87344501 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
87344521 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
87344541 CATGT
1 CATGT
87344546 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:87344634 original size:24 final size:25
Alignment explanation
Indices: 87344582--87344634 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
87344572 ATACATAAAC
* * *
87344582 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
87344607 CCTAGGGGCAAAACGGTCA-TTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
87344631 CCTA
1 CCTA
87344635 TTAGGGGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:87344716 original size:27 final size:27
Alignment explanation
Indices: 87344686--87344940 Score: 139
Period size: 27 Copynumber: 9.4 Consensus size: 27
87344676 GTAAATCTAC
*
87344686 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
87344713 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
**
87344739 AGAAAGTTAAGGGTA-TTTATGTAATTTTGT
1 --AAA-CCAAGGGTATTTTA-GTAATTTTGT
* * **
87344769 AAATC-AGTGG-ATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
*** ** ***
87344795 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * **
87344822 AAA-CTAGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* **
87344849 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
*
87344876 AAACC-AGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
87344902 AAACCAAGGGTATTTTAGTATTTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* *
87344929 AAATCGAGGGTA
1 AAACCAAGGGTA
87344941 AAACAATAAT
Statistics
Matches: 192, Mismatches: 22, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
26 42 0.22
27 126 0.66
28 10 0.05
29 13 0.07
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:87344816 original size:53 final size:54
Alignment explanation
Indices: 87344691--87344899 Score: 201
Period size: 54 Copynumber: 3.9 Consensus size: 54
87344681 TCTACAAACC
* ** * * *
87344691 AAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTT
1 AAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTT-TGGTAA-TTTTACAAA-TT
** ** *
87344747 AAGGGTATTTATGTAATTTTGTAAATCAGTGG-ATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAATT
* * * *
87344800 GAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAATT
* *
87344853 CAGTGGTATTTTGGTAATTTTACAAACCAG-GGTATTTTGGTAATTTT
1 AAG-GGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTT
87344900 GTAAACCAAG
Statistics
Matches: 131, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
53 45 0.34
54 51 0.39
55 7 0.05
56 28 0.21
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.43
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAATT
Found at i:87344843 original size:54 final size:54
Alignment explanation
Indices: 87344773--87344916 Score: 179
Period size: 54 Copynumber: 2.7 Consensus size: 54
87344763 TTTTGTAAAT
**
87344773 CAGTGG-ATTTTGGTAATTTTACAAATTGAG-GGTATTTCGGTAATTTCACAAAC
1 CAGTGGTATTTTGGTAATTTTACAAA-CCAGTGGTATTTCGGTAATTTCACAAAC
* * *
87344826 TAGTGGTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAAC
1 CAGTGGTATTTTGGTAATTTTACAAACCAGTGGTATTTCGGTAATTTCACAAAC
**
87344880 CAG-GGTATTTTGGTAATTTTGTAAACCAAG-GGTATTT
1 CAGTGGTATTTTGGTAATTTTACAAACC-AGTGGTATTT
87344917 TAGTATTTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
53 36 0.45
54 44 0.55
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
CAGTGGTATTTTGGTAATTTTACAAACCAGTGGTATTTCGGTAATTTCACAAAC
Found at i:87344885 original size:80 final size:80
Alignment explanation
Indices: 87344750--87344898 Score: 212
Period size: 80 Copynumber: 1.9 Consensus size: 80
87344740 GAAAGTTAAG
** * **
87344750 GGTATTTATGTAATTTTGTAAATCAGTGGATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTA
1 GGTATTTATGTAATTTTACAAACCAGTGGATTTTGGTAATTTTACAAATCCAGGGTATTTCGGTA
87344815 ATTTCACAAACTAGT
66 ATTTCACAAACTAGT
*
87344830 GGTATTT-TGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAA-CCAGGGTATTTTGG
1 GGTATTTAT-GTAATTTTACAAACCAGTGG-ATTTTGGTAATTTTACAAATCCAGGGTATTTCGG
87344893 TAATTT
64 TAATTT
87344899 TGTAAACCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
79 1 0.02
80 41 0.67
81 19 0.31
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (80 bp):
GGTATTTATGTAATTTTACAAACCAGTGGATTTTGGTAATTTTACAAATCCAGGGTATTTCGGTA
ATTTCACAAACTAGT
Found at i:87344906 original size:53 final size:54
Alignment explanation
Indices: 87344683--87344926 Score: 210
Period size: 53 Copynumber: 4.5 Consensus size: 54
87344673 TTAGTAAATC
** ** * *
87344683 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTT-TGGTAA-TTT
* ** ** *
87344738 TAGAAAGTTAAGGGTATTTAT-GTAATTTTGTAAATCAGTGG-ATTTTGGTAATTT
1 TACAAA-CCAAGGGTATTT-TGGTAATTTTACAAACCAGTGGTATTTTGGTAATTT
*** * * *
87344792 TACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTT
87344846 TACAAACC-AGTGGTATTTTGGTAATTTTACAAACCAG-GGTATTTTGGTAATTT
1 TACAAACCAAG-GGTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTT
** * *
87344899 TGTAAACCAAGGGTATTTTAGTATTTTT
1 TACAAACCAAGGGTATTTTGGTAATTTT
87344927 GTAAATCGAG
Statistics
Matches: 158, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
53 65 0.41
54 53 0.34
55 12 0.08
56 28 0.18
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (54 bp):
TACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTT
Found at i:87344914 original size:80 final size:78
Alignment explanation
Indices: 87344747--87344926 Score: 200
Period size: 80 Copynumber: 2.2 Consensus size: 78
87344737 TTAGAAAGTT
** * **
87344747 AAGGGTATTTATGTAATTTTGTAAATCAGTGGATTTTGGTAATTTTACAAATTGAGGGTATTTCG
1 AAGGGTATTT-TGTAATTTTACAAACCAGTGGATTTTGGTAATTTTACAAATCCAGGGTATTTCG
87344812 GTAATTTCACAAAC
65 GTAATTTCACAAAC
*
87344826 TAGTGGTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAA-CCAGGGTATTT
1 AAG-GGTATTTT-GTAATTTTACAAACCAGTGG-ATTTTGGTAATTTTACAAATCCAGGGTATTT
* ***
87344890 TGGTAATTTTGTAAACC
63 CGGTAATTTCACAAA-C
*
87344907 AAGGGTATTTTAGTATTTTT
1 AAGGGTATTTT-GTAATTTT
87344927 GTAAATCGAG
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
79 3 0.04
80 59 0.70
81 22 0.26
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (78 bp):
AAGGGTATTTTGTAATTTTACAAACCAGTGGATTTTGGTAATTTTACAAATCCAGGGTATTTCGG
TAATTTCACAAAC
Found at i:87344956 original size:27 final size:27
Alignment explanation
Indices: 87344926--87345048 Score: 156
Period size: 27 Copynumber: 4.6 Consensus size: 27
87344916 TTAGTATTTT
87344926 TGTAAATCGAGGGTAAAACAATAATTC
1 TGTAAATCGAGGGTAAAACAATAATTC
* * *
87344953 TGTAAATCAAGGGTAAAATAGTAATTC
1 TGTAAATCGAGGGTAAAACAATAATTC
* ** *
87344980 TATAAATCGAGGGTAAAACGGTTATTC
1 TGTAAATCGAGGGTAAAACAATAATTC
* *
87345007 TGTAAATCGAGGGTAAAACGATAATTA
1 TGTAAATCGAGGGTAAAACAATAATTC
*
87345034 TGTAAATCGGGGGTA
1 TGTAAATCGAGGGTA
87345049 CTTTGGTAAT
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
TGTAAATCGAGGGTAAAACAATAATTC
Found at i:87348448 original size:20 final size:21
Alignment explanation
Indices: 87348423--87348466 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
87348413 GGGGACTAAA
*
87348423 ATGAAAAG-TTGTAAAATTTG
1 ATGAAAAGCTTCTAAAATTTG
*
87348443 ATG-AAAGCTTCTAAAATTTT
1 ATGAAAAGCTTCTAAAATTTG
87348463 ATGA
1 ATGA
87348467 TTACATGTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.36
Consensus pattern (21 bp):
ATGAAAAGCTTCTAAAATTTG
Found at i:87350393 original size:27 final size:27
Alignment explanation
Indices: 87350363--87350454 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
87350353 ATTACCAAAG
* *
87350363 TACCCTCGATTTATAGAATCACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
87350390 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
87350417 TACCCTCGATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAGAATTACT-ATTT
87350444 TACCCTCGATT
1 TACCCTCGATT
87350455 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:87350476 original size:27 final size:26
Alignment explanation
Indices: 87350446--87350588 Score: 92
Period size: 27 Copynumber: 5.3 Consensus size: 26
87350436 TATCATTTTA
*
87350446 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCGAAATAC
* * *
87350473 CCCT-ATAGGGTAGAATTACCAAAATAC
1 CCCTGATTGTG-A-AATTACCGAAATAC
* * * *
87350500 CCCTAGTTTGTAAAACTACCAAAATAC
1 CCCT-GATTGTGAAATTACCGAAATAC
* *
87350527 CACTGGTTTGTGAAATTACCGAAATAC
1 CCCT-GATTGTGAAATTACCGAAATAC
* * *
87350554 CCTTAATTTGTAAAATTA-CGAAAATAC
1 CCCTGA-TTGTGAAATTACCG-AAATAC
87350581 CCCTGATT
1 CCCTGATT
87350589 TACAAAGCTA
Statistics
Matches: 89, Mismatches: 21, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
25 4 0.04
26 5 0.06
27 77 0.87
28 1 0.01
29 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.29
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCGAAATAC
Found at i:87350589 original size:27 final size:27
Alignment explanation
Indices: 87350486--87350589 Score: 120
Period size: 27 Copynumber: 3.9 Consensus size: 27
87350476 TATAGGGTAG
87350486 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * * *
87350513 AACTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* * *
87350540 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
*
87350567 AATTACGAAAATACCCCTGATTT
1 AATTACCAAAATACCCCTGATTT
87350590 ACAAAGCTAC
Statistics
Matches: 61, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:87350720 original size:27 final size:27
Alignment explanation
Indices: 87350699--87350768 Score: 140
Period size: 27 Copynumber: 2.6 Consensus size: 27
87350689 ACCCCTATTA
87350699 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAGTGACCGTAAAGCCCCTGTAG
87350726 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAGTGACCGTAAAGCCCCTGTAG
87350753 GGTAAAGTGACCGTAA
1 GGTAAAGTGACCGTAA
87350769 TACCAACGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.31, C:0.20, G:0.30, T:0.19
Consensus pattern (27 bp):
GGTAAAGTGACCGTAAAGCCCCTGTAG
Found at i:87351496 original size:9 final size:10
Alignment explanation
Indices: 87351484--87351540 Score: 66
Period size: 9 Copynumber: 5.8 Consensus size: 10
87351474 TTTGATATAC
87351484 ATGAT-TGAT
1 ATGATATGAT
87351493 ATGATATGCAT
1 ATGATATG-AT
87351504 ATGATATG-T
1 ATGATATGAT
*
87351513 ATGATATGCAC
1 ATGATATG-AT
87351524 ATGATATG-T
1 ATGATATGAT
87351533 ATGATATG
1 ATGATATG
87351541 CACATGATGT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 22 0.52
10 2 0.05
11 18 0.43
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39
Consensus pattern (10 bp):
ATGATATGAT
Found at i:87351507 original size:11 final size:11
Alignment explanation
Indices: 87351491--87351548 Score: 70
Period size: 11 Copynumber: 5.6 Consensus size: 11
87351481 TACATGATTG
87351491 ATATGATATGC
1 ATATGATATGC
87351502 ATATGATATG-
1 ATATGATATGC
87351512 -TATGATATGC
1 ATATGATATGC
*
87351522 ACATGATATG-
1 ATATGATATGC
87351532 -TATGATATGC
1 ATATGATATGC
*
87351542 ACATGAT
1 ATATGAT
87351549 GTATTCATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
9 17 0.43
11 23 0.57
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (11 bp):
ATATGATATGC
Found at i:87351515 original size:20 final size:20
Alignment explanation
Indices: 87351482--87351548 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
87351472 ATTTTGATAT
87351482 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
87351502 ATATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
87351522 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
87351542 ACATGAT
1 ACATGAT
87351549 GTATTCATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:87351935 original size:38 final size:38
Alignment explanation
Indices: 87351893--87351989 Score: 194
Period size: 38 Copynumber: 2.6 Consensus size: 38
87351883 GATATGAAAC
87351893 ATGAAAAGGCTTCGGCCCAGTGTTATGCAATATGGTAA
1 ATGAAAAGGCTTCGGCCCAGTGTTATGCAATATGGTAA
87351931 ATGAAAAGGCTTCGGCCCAGTGTTATGCAATATGGTAA
1 ATGAAAAGGCTTCGGCCCAGTGTTATGCAATATGGTAA
87351969 ATGAAAAGGCTTCGGCCCAGT
1 ATGAAAAGGCTTCGGCCCAGT
87351990 ATATGTTGAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.25
Consensus pattern (38 bp):
ATGAAAAGGCTTCGGCCCAGTGTTATGCAATATGGTAA
Found at i:87370592 original size:25 final size:27
Alignment explanation
Indices: 87370512--87370578 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
87370502 ATGTCATATC
* * *
87370512 TGTAGGCTAGTATTACTGAAATGCCCC
1 TGTAGGGTAGAATTACTGAAATGCCCT
87370539 TGTAGGGTAGAATTACTGAAATGCCCT
1 TGTAGGGTAGAATTACTGAAATGCCCT
87370566 TGTAGGGTAGAAT
1 TGTAGGGTAGAAT
87370579 ATTAAATACC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATGCCCT
Found at i:87370867 original size:54 final size:54
Alignment explanation
Indices: 87370809--87370941 Score: 128
Period size: 54 Copynumber: 2.4 Consensus size: 54
87370799 AATAACCTCG
* * * * *
87370809 ATTTGTAAAATTATC-AAAATAATCTTGATTTGGAAAATTACCA-AAATACCTTTT
1 ATTTGGAAAATTA-CAAAAATAACCCTAATTTAGAAAATTA-CAGAAATACCTTTT
* *
87370863 ATTTGGAAAATTACAAAAATACCCCTAATTTAGAAAATTACAGAAATACCTTTG
1 ATTTGGAAAATTACAAAAATAACCCTAATTTAGAAAATTACAGAAATACCTTTT
**
87370917 ACTTTTAAAAAATTACAAAAA-AACC
1 A--TTTGGAAAATTACAAAAATAACC
87370942 ATTGGTTTGC
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
53 3 0.05
54 43 0.66
55 3 0.05
56 16 0.25
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (54 bp):
ATTTGGAAAATTACAAAAATAACCCTAATTTAGAAAATTACAGAAATACCTTTT
Found at i:87370883 original size:81 final size:81
Alignment explanation
Indices: 87370675--87370883 Score: 186
Period size: 81 Copynumber: 2.6 Consensus size: 81
87370665 ATACCCCAGG
* ** * *
87370675 TTTGTAAAATTACCAGAATACCCCTAATTT-GAGAAATTACCAAAATACCCTCGACTTGTAAAAT
1 TTTGTAAAATTACCAAAATACCATTAATTTGGA-AAATTACAAAAATAACCTCGACTTGTAAAAT
* *
87370739 TATCGAAATACCCTTAA
65 TATCAAAATAACCTTAA
** * ** * ** * ** *
87370756 CCTATAAAATTATTAAAATACCATTGACCTGTAAAATTACTGAAATAACCTCGATTTGTAAAATT
1 TTTGTAAAATTACCAAAATACCATTAATTTGGAAAATTACAAAAATAACCTCGACTTGTAAAATT
* *
87370821 ATCAAAATAATCTTGA
66 ATCAAAATAACCTTAA
* * *
87370837 TTTGGAAAATTACCAAAATACCTTTTATTTGGAAAATTACAAAAATA
1 TTTGTAAAATTACCAAAATACCATTAATTTGGAAAATTACAAAAATA
87370884 CCCCTAATTT
Statistics
Matches: 94, Mismatches: 33, Indels: 2
0.73 0.26 0.02
Matches are distributed among these distances:
81 93 0.99
82 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (81 bp):
TTTGTAAAATTACCAAAATACCATTAATTTGGAAAATTACAAAAATAACCTCGACTTGTAAAATT
ATCAAAATAACCTTAA
Found at i:87370926 original size:27 final size:28
Alignment explanation
Indices: 87370582--87370926 Score: 152
Period size: 27 Copynumber: 12.8 Consensus size: 28
87370572 GTAGAATATT
** *
87370582 AAATACCCTTGA-TTTACAAAATTACCA
1 AAATACCCTTGACTTTGTAAAATTATCA
* * * * * *
87370609 ATATACCCTCGA-TTAGCAAAGTTACCA
1 AAATACCCTTGACTTTGTAAAATTATCA
*
87370636 AAATACCCCTGA-TTTGTAAAATTA-CAA
1 AAATACCCTTGACTTTGTAAAATTATC-A
** * *
87370663 AAATACCCCAG-GTTTGTAAAATTACCA
1 AAATACCCTTGACTTTGTAAAATTATCA
* * * *
87370690 GAATACCCCT-AATTTG-AGAAATTACCA
1 AAATACCCTTGACTTTGTA-AAATTATCA
* *
87370717 AAATACCCTCGAC-TTGTAAAATTATCG
1 AAATACCCTTGACTTTGTAAAATTATCA
* * * *
87370744 AAATACCCTTAAC-CTATAAAATTATTA
1 AAATACCCTTGACTTTGTAAAATTATCA
* * *
87370771 AAATACCATTGAC-CTGTAAAATTA-CTG
1 AAATACCCTTGACTTTGTAAAATTATC-A
* *
87370798 AAATAACCTCGA-TTTGTAAAATTATCA
1 AAATACCCTTGACTTTGTAAAATTATCA
** * *
87370825 AAATAATCTTGA-TTTGGAAAATTACCA
1 AAATACCCTTGACTTTGTAAAATTATCA
* * *
87370852 AAATACCTTTTA-TTTGGAAAATTA-CAA
1 AAATACCCTTGACTTTGTAAAATTATC-A
* *
87370879 AAATACCCCT-AATTTAG-AAAATTA-CA
1 AAATACCCTTGACTTT-GTAAAATTATCA
*
87370905 GAAATACCTTTGACTTT-TAAAA
1 -AAATACCCTTGACTTTGTAAAA
87370927 AATTACAAAA
Statistics
Matches: 252, Mismatches: 50, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
26 5 0.02
27 238 0.94
28 9 0.04
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (28 bp):
AAATACCCTTGACTTTGTAAAATTATCA
Found at i:87382485 original size:26 final size:26
Alignment explanation
Indices: 87382427--87382486 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
87382417 ACATTTCTCG
*
87382427 AAATTTTACTAGGGGTAAAATAGTTA
1 AAATTTTACTAGGGGTAAAATAGTCA
* *
87382453 AAGTTTTAGCTA-GGGTAAAATTGTCA
1 AAATTTTA-CTAGGGGTAAAATAGTCA
87382479 AAATTTTA
1 AAATTTTA
87382487 TTGAAGTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.40, C:0.05, G:0.18, T:0.37
Consensus pattern (26 bp):
AAATTTTACTAGGGGTAAAATAGTCA
Found at i:87397526 original size:43 final size:44
Alignment explanation
Indices: 87397457--87397573 Score: 157
Period size: 44 Copynumber: 2.7 Consensus size: 44
87397447 AGCTCGTACA
* *
87397457 ATGCCAACGTCCCAGACCTCGTCTTACATGT-AATCA-AATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCATAA-ATCG
* * * *
87397500 ATGTCGATGTCCCAGACATGGTCTTACATGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCATAAATCG
87397544 ATGCCAACGTCCCAGACATGGTCTTACATG
1 ATGCCAACGTCCCAGACATGGTCTTACATG
87397574 AAAACACATA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
43 26 0.41
44 35 0.56
45 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCATAAATCG
Found at i:87399600 original size:20 final size:20
Alignment explanation
Indices: 87399575--87399612 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87399565 GTTTATTCGC
*
87399575 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
87399595 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
87399613 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:87406861 original size:43 final size:43
Alignment explanation
Indices: 87406770--87406863 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
87406760 TAACCCAAGG
* * *
87406770 GACACACAGCCGTGTAACATAACCATGTGTCACACACAGTTGA
1 GACACACAACCATGTAACATAACCATGTGTCACACACAGCTGA
* ** *
87406813 GACACACAACCATGTAACATAACCGTGTGTCGTACACGGCTGA
1 GACACACAACCATGTAACATAACCATGTGTCACACACAGCTGA
*
87406856 TACACACA
1 GACACACA
87406864 CTCGTGTCTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.35, C:0.29, G:0.18, T:0.18
Consensus pattern (43 bp):
GACACACAACCATGTAACATAACCATGTGTCACACACAGCTGA
Found at i:87407904 original size:43 final size:42
Alignment explanation
Indices: 87407843--87407945 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 42
87407833 TTAAAGACGT
* * *
87407843 GGTCTTACATGTAATCAAATATTGATG-CCATTATCCCAAACAA
1 GGTCTTACACGAAATCAAATA-CGATGTCCA-TATCCCAAACAA
* * * *
87407886 GGTCTTACACGAAATCAAATACGATGTCGATGTCCCATACAT
1 GGTCTTACACGAAATCAAATACGATGTCCATATCCCAAACAA
87407928 GGTCTTACACGTAAATCA
1 GGTCTTACACG-AAATCA
87407946 TGAGTCAATG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
42 24 0.47
43 27 0.53
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGTCCATATCCCAAACAA
Found at i:87407935 original size:42 final size:42
Alignment explanation
Indices: 87407867--87407985 Score: 114
Period size: 44 Copynumber: 2.8 Consensus size: 42
87407857 TCAAATATTG
* * * *
87407867 ATGCCATTATCCCAAACAAGGTCTTACACGAAATCA-AATACG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAAATCAGAAT-CA
* * * *
87407909 ATGTCGATGTCCCATACATGGTCTTACACGTAAATCATGAGTCA
1 ATGCCAATGTCCCAAACATGGTCTTACACG-AAATCA-GAATCA
* *
87407953 ATGCCAATGTCCCAGACGTGGTCTTACACGAAA
1 ATGCCAATGTCCCAAACATGGTCTTACACGAAA
87407986 ACACATATCG
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
42 24 0.39
43 9 0.15
44 27 0.44
45 2 0.03
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGAAATCAGAATCA
Found at i:87411543 original size:29 final size:29
Alignment explanation
Indices: 87411485--87411543 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
87411475 CTAATTAGGC
* * *
87411485 TTGAAATTGATAGATTTTAAACTTAGATT
1 TTGAAAATGATAAATTGTAAACTTAGATT
*
87411514 TTGAAAATGACTAAATTGTAAAGTTA-ATT
1 TTGAAAATGA-TAAATTGTAAACTTAGATT
87411543 T
1 T
87411544 AAATTATTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
29 13 0.52
30 12 0.48
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.42
Consensus pattern (29 bp):
TTGAAAATGATAAATTGTAAACTTAGATT
Found at i:87414352 original size:66 final size:68
Alignment explanation
Indices: 87414276--87414462 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
87414266 TAGTACCACT
*
87414276 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
87414338 CACG
65 CACG
87414342 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
87414407 ATCACG
63 ATCACG
87414413 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
87414463 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:87414387 original size:71 final size:71
Alignment explanation
Indices: 87414299--87414462 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
87414289 CGATTTGTCT
87414299 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
87414364 CTTTCA
66 CTTTCA
87414370 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
87414435 CTTTCA
66 CTTTCA
87414441 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
87414463 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:87414500 original size:71 final size:70
Alignment explanation
Indices: 87414299--87414496 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
87414289 CGATTTGTCT
* * *
87414299 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
87414364 CTTTCA
65 CTTTCA
* * *
87414370 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
87414435 CTTTCA
65 CTTTCA
* *
87414441 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
87414497 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:87421922 original size:66 final size:68
Alignment explanation
Indices: 87421846--87422032 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
87421836 TAGTACCACT
*
87421846 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
87421908 CACG
65 CACG
87421912 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
87421977 ATCACG
63 ATCACG
87421983 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
87422033 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:87421957 original size:71 final size:71
Alignment explanation
Indices: 87421869--87422032 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
87421859 CGATTTGTCT
87421869 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
87421934 CTTTCA
66 CTTTCA
87421940 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
87422005 CTTTCA
66 CTTTCA
87422011 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
87422033 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:87422070 original size:71 final size:70
Alignment explanation
Indices: 87421869--87422066 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
87421859 CGATTTGTCT
* * *
87421869 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
87421934 CTTTCA
65 CTTTCA
* * *
87421940 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
87422005 CTTTCA
65 CTTTCA
* *
87422011 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
87422067 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:87424406 original size:18 final size:19
Alignment explanation
Indices: 87424366--87424408 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
87424356 ATGGCTGGGG
87424366 ACACGAGCGTGTCTGAGCC
1 ACACGAGCGTGTCTGAGCC
* *
87424385 ACACGGGCGTGTGTGA-CC
1 ACACGAGCGTGTCTGAGCC
87424403 ACACGA
1 ACACGA
87424409 CCTAACCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.23, C:0.30, G:0.33, T:0.14
Consensus pattern (19 bp):
ACACGAGCGTGTCTGAGCC
Found at i:87430109 original size:46 final size:46
Alignment explanation
Indices: 87430051--87430229 Score: 193
Period size: 46 Copynumber: 3.9 Consensus size: 46
87430041 GGATATTTGG
*
87430051 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGA
1 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGA
* * * *
87430097 GCGTTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT---GA
* * *
87430143 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 -GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGA
* * * *
87430190 ACACTCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87430230 GGGGGTTACA
Statistics
Matches: 110, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
45 2 0.02
46 67 0.61
47 30 0.27
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGA
Found at i:87430209 original size:93 final size:93
Alignment explanation
Indices: 87430050--87430222 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
87430040 GGGATATTTG
* * **
87430050 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACTCGAACTCGTTGAG
87430115 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
87430143 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACTCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACTCGAACTCGTTGAG
87430208 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
87430223 CTTATGGGGG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACTCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:87434569 original size:13 final size:13
Alignment explanation
Indices: 87434551--87434576 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87434541 ACACCAAAGG
87434551 TCTGCACTTAAAA
1 TCTGCACTTAAAA
87434564 TCTGCACTTAAAA
1 TCTGCACTTAAAA
87434577 CTCACCTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
TCTGCACTTAAAA
Found at i:87441861 original size:18 final size:18
Alignment explanation
Indices: 87441838--87441876 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
87441828 CCCCATTTAA
87441838 ACCTTCAACACCCTCACC
1 ACCTTCAACACCCTCACC
* * *
87441856 ACCTTCACCACTCTTACC
1 ACCTTCAACACCCTCACC
87441874 ACC
1 ACC
87441877 CAGACTGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.54, G:0.00, T:0.21
Consensus pattern (18 bp):
ACCTTCAACACCCTCACC
Found at i:87444273 original size:21 final size:21
Alignment explanation
Indices: 87444249--87444288 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
87444239 CGTATGGGAG
87444249 GAGGCAAATAG-CCGTGTGGAT
1 GAGGCAAA-AGCCCGTGTGGAT
*
87444270 GAGGCACAAGCCCGTGTGG
1 GAGGCAAAAGCCCGTGTGG
87444289 GCCAGGGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.25, C:0.20, G:0.40, T:0.15
Consensus pattern (21 bp):
GAGGCAAAAGCCCGTGTGGAT
Found at i:87448905 original size:46 final size:46
Alignment explanation
Indices: 87448852--87449027 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
87448842 TGGTTGAGCA
*
87448852 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
87448898 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
87448945 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
87448991 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87449028 GGGGTTACAT
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 71 0.68
47 34 0.32
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:87449008 original size:93 final size:93
Alignment explanation
Indices: 87448849--87449019 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
87448839 GGATGGTTGA
* * *
87448849 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
87448914 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
87448942 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
87449007 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
87449020 ACTTATGGGG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:87451975 original size:15 final size:15
Alignment explanation
Indices: 87451936--87452015 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
87451926 GTATCTTGGG
*
87451936 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
87451951 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
87451966 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
87451981 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
87451996 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
87452010 TTTCTT
1 TTTCTT
87452016 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:87452005 original size:30 final size:30
Alignment explanation
Indices: 87451927--87452014 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
87451917 CATAGTATCG
* * *
87451927 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
87451957 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
87451987 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
87452015 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:87454451 original size:46 final size:46
Alignment explanation
Indices: 87454401--87454576 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
87454391 TGGTTGAGCA
*
87454401 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
87454447 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * * *
87454494 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
87454540 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87454577 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 35 0.33
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:87454557 original size:93 final size:93
Alignment explanation
Indices: 87454398--87454568 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
87454388 GGATGGTTGA
* * * *
87454398 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCATTGAGT
87454463 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
87454491 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCATTGAGT
87454556 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
87454569 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:87456951 original size:38 final size:41
Alignment explanation
Indices: 87456863--87456969 Score: 139
Period size: 38 Copynumber: 2.6 Consensus size: 41
87456853 TCAATGTCAC
* *
87456863 TGTCCCAGACAGGGTCTTACACGAAATCGATTAACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAA-C-ATTAACGATGCCAA
*
87456906 TGTCCCAGACATGGTCTTACACGTAA-A-T-ACGGTGCCAA
1 TGTCCCAGACATGGTCTTACACGTAACATTAACGATGCCAA
*
87456944 TGTCCCAGACATGGTCTTACATGTAA
1 TGTCCCAGACATGGTCTTACACGTAA
87456970 TCACAGCTCA
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
38 34 0.57
39 1 0.02
40 1 0.02
43 24 0.40
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (41 bp):
TGTCCCAGACATGGTCTTACACGTAACATTAACGATGCCAA
Found at i:87460083 original size:21 final size:21
Alignment explanation
Indices: 87460037--87460083 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
87460027 GTGAGGGTCT
**
87460037 CACACGCCCGTGTGCCCACTA
1 CACACGCCCGTGTGCCCAAAA
* *
87460058 GACACGGCCGTGTGCCCAAAA
1 CACACGCCCGTGTGCCCAAAA
87460079 CACAC
1 CACAC
87460084 ACTCATGCGG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.43, G:0.21, T:0.11
Consensus pattern (21 bp):
CACACGCCCGTGTGCCCAAAA
Found at i:87461065 original size:29 final size:29
Alignment explanation
Indices: 87460983--87461050 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
87460973 AGGGTGTTAC
*
87460983 ATCCCTAAATTCAA-AA-AA-AACCCCAAAA
1 ATCCCTAAATTCAACAACAATAA-ACC-AAA
87461011 ATCCCTAAATTCAACAACAATAAACCAAA
1 ATCCCTAAATTCAACAACAATAAACCAAA
87461040 ATCCCTAAATT
1 ATCCCTAAATT
87461051 TGACAATCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
28 14 0.39
29 16 0.44
30 4 0.11
31 2 0.06
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (29 bp):
ATCCCTAAATTCAACAACAATAAACCAAA
Found at i:87473980 original size:32 final size:29
Alignment explanation
Indices: 87473947--87474004 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
87473937 ACTATGAATG
87473947 ATGATAATATGGCTTATTTTAACTTTGTT
1 ATGATAATATGGCTTATTTTAACTTTGTT
87473976 ATGATAATATGGCTTATTTTAACTTTGTT
1 ATGATAATATGGCTTATTTTAACTTTGTT
87474005 TTTATTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.52
Consensus pattern (29 bp):
ATGATAATATGGCTTATTTTAACTTTGTT
Found at i:87478464 original size:40 final size:40
Alignment explanation
Indices: 87478398--87478564 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
87478388 AAATTGAATG
* * *
87478398 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
87478437 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
87478477 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
87478517 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
87478557 ATATCCGG
1 ATATCCGG
87478565 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:87486467 original size:40 final size:40
Alignment explanation
Indices: 87486401--87486567 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
87486391 AAATTGAATG
* * *
87486401 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
87486440 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
87486480 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
87486520 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
87486560 ATATCCGG
1 ATATCCGG
87486568 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:87487997 original size:43 final size:43
Alignment explanation
Indices: 87487925--87488019 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 43
87487915 TTGGGGTGTT
* ** *
87487925 ACATTGGCATCGTTATATGATTTCGTGTAAGACCATATCTGGG
1 ACATTGGCATCGATATATGATAACATGTAAGACCATATCTGGG
*
87487968 ACATTGGCATCGATATGTGATAACATGTAAGACCATATCTGGG
1 ACATTGGCATCGATATATGATAACATGTAAGACCATATCTGGG
*
87488011 ATA-TGGCAT
1 ACATTGGCAT
87488020 TATACGAGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 6 0.13
43 40 0.87
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
ACATTGGCATCGATATATGATAACATGTAAGACCATATCTGGG
Found at i:87499627 original size:42 final size:42
Alignment explanation
Indices: 87499523--87499683 Score: 155
Period size: 42 Copynumber: 3.8 Consensus size: 42
87499513 TCGTACAATA
* * * *
87499523 CCAATGTCCCAGACGTGGTCATACATGTAATCAAATATCGATG
1 CCAATGTCCCAGACATGGTCTTACACGAAATCAAATA-CGATG
* * * *
87499566 CC-ATTTTCTAGACAGGGTCTTACACGAAATCAAATACGATG
1 CCAATGTCCCAGACATGGTCTTACACGAAATCAAATACGATG
* *
87499607 CCAATGTCCCAGATATGGTCTTACATGTAAATCTCAAAT-CGATG
1 CCAATGTCCCAGACATGGTCTTACACG-AAA--TCAAATACGATG
* * *
87499651 CCAACGTCCCAGACCTAGTCTTACACGAAATCA
1 CCAATGTCCCAGACATGGTCTTACACGAAATCA
87499684 CATATTTGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
41 10 0.11
42 44 0.46
43 8 0.08
44 27 0.28
45 6 0.06
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
CCAATGTCCCAGACATGGTCTTACACGAAATCAAATACGATG
Found at i:87501622 original size:17 final size:17
Alignment explanation
Indices: 87501600--87501633 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
87501590 TTCATATAGA
87501600 TCAAGAAAGAAACAAAT
1 TCAAGAAAGAAACAAAT
87501617 TCAAGAAAGAAACAAAT
1 TCAAGAAAGAAACAAAT
87501634 CAGATTTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.12, T:0.12
Consensus pattern (17 bp):
TCAAGAAAGAAACAAAT
Found at i:87501943 original size:43 final size:44
Alignment explanation
Indices: 87501885--87502035 Score: 164
Period size: 43 Copynumber: 3.5 Consensus size: 44
87501875 GATTGTCGAG
* *
87501885 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTAT
* *
87501929 -TGTGATTACGTGTAAGACAATGTTTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTAT
* * * * * * * *
87501971 GTATGATTTCGTGTAAAATCATGTTTGAGACATTAGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTAT
*
87502014 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
87502036 ATCTAGGATA
Statistics
Matches: 87, Mismatches: 18, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 1 0.01
43 86 0.99
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTAT
Found at i:87506541 original size:21 final size:20
Alignment explanation
Indices: 87506502--87506539 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
87506492 TGTTTCTAGA
87506502 AAAAATTTTCTAAGTTTTGT
1 AAAAATTTTCTAAGTTTTGT
87506522 AAAAA-TTTCTCAAGTTTT
1 AAAAATTTTCT-AAGTTTT
87506540 TGGTTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (20 bp):
AAAAATTTTCTAAGTTTTGT
Found at i:87508763 original size:40 final size:40
Alignment explanation
Indices: 87508651--87508899 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
87508641 CGGGATTTAA
* * * * *
87508651 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
87508691 CCGGATTTGGT-GACTTGCAC-AAAGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87508730 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87508770 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87508810 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87508850 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87508890 CCGGATATAT
1 CCGGATATAT
87508900 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 29 0.15
40 163 0.84
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:87516930 original size:40 final size:40
Alignment explanation
Indices: 87516822--87517071 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
87516812 CGGGATTTAA
* * * * *
87516822 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
87516862 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87516902 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87516942 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87516982 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87517022 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87517062 CCGGATATAT
1 CCGGATATAT
87517072 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:87519613 original size:201 final size:201
Alignment explanation
Indices: 87519264--87519663 Score: 773
Period size: 201 Copynumber: 2.0 Consensus size: 201
87519254 GAAAATTTTG
87519264 GAAAACTTAGAAATTTTTCAATCATATAAGGGTCACACGCCCGTGTGAATTGGCCGTGTGCCTTA
1 GAAAACTTAGAAATTTTTCAATCATATAAGGGTCACACGCCCGTGTGAATTGGCCGTGTGCCTTA
*
87519329 CACAGCTAGTAGACATGCTCGTGTCTTAGGCCATGTGGAAACAGGGCATACATACTGACTTGTAT
66 CACAGCTAGTAGACATGCCCGTGTCTTAGGCCATGTGGAAACAGGGCATACATACTGACTTGTAT
87519394 CACATGGCCGACGACATGCCCGTGTACCAGGCCGTTTGAAAGCTAGAGGGTATACTGACTCAGGT
131 CACATGGCCGACGACATGCCCGTGTACCAGGCCGTTTGAAAGCTAGAGGGTATACTGACTCAGGT
87519459 CACATT
196 CACATT
87519465 GAAAACTTAGAAATTTTTCAATCATATAAGGGTCACACGCCCGTGTGAATTGGCCGTGTGCCTTA
1 GAAAACTTAGAAATTTTTCAATCATATAAGGGTCACACGCCCGTGTGAATTGGCCGTGTGCCTTA
*
87519530 CACAGCTAGTAGACATGCCCGTGTCTTAGGCCGTGTGGAAACAGGGCATACATACTGACTTGTAT
66 CACAGCTAGTAGACATGCCCGTGTCTTAGGCCATGTGGAAACAGGGCATACATACTGACTTGTAT
*
87519595 CACATGGCCGATGACATGCCCGTGTACCAGGCCGTTTGAAAGCTAGAGGGTATACTGACTCAGGT
131 CACATGGCCGACGACATGCCCGTGTACCAGGCCGTTTGAAAGCTAGAGGGTATACTGACTCAGGT
87519660 CACA
196 CACA
87519664 CGGCCAACCA
Statistics
Matches: 196, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
201 196 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (201 bp):
GAAAACTTAGAAATTTTTCAATCATATAAGGGTCACACGCCCGTGTGAATTGGCCGTGTGCCTTA
CACAGCTAGTAGACATGCCCGTGTCTTAGGCCATGTGGAAACAGGGCATACATACTGACTTGTAT
CACATGGCCGACGACATGCCCGTGTACCAGGCCGTTTGAAAGCTAGAGGGTATACTGACTCAGGT
CACATT
Done.