Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 281 of 433
Found at i:87524451 original size:24 final size:24
Alignment explanation
Indices: 87524423--87524469 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
87524413 AGTGAAATCT
*
87524423 ATAAATTTCCATCTTCAATTAATG
1 ATAAACTTCCATCTTCAATTAATG
* *
87524447 ATAAACTTCTATCTTCCATTAAT
1 ATAAACTTCCATCTTCAATTAAT
87524470 ATTTAATGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.36, C:0.19, G:0.02, T:0.43
Consensus pattern (24 bp):
ATAAACTTCCATCTTCAATTAATG
Found at i:87526717 original size:39 final size:39
Alignment explanation
Indices: 87526674--87526843 Score: 259
Period size: 39 Copynumber: 4.4 Consensus size: 39
87526664 AGGATAAACT
* * * * *
87526674 GGTGGCTTGGGTGGAGGGGCGTAAGTTGGTGGCTTGGTC
1 GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
* *
87526713 GGTGGCTTGGGCGGAGGAGCGTAAGTTGGCGGCTTGCTG
1 GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
87526752 GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
1 GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
* *
87526791 GGTGACTTGGGAGGAGGAGCGTAAGTTGGCGGCTTGCTT
1 GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
87526830 GGTGACTTGGGTGG
1 GGTGACTTGGGTGG
87526844 TGGATAAACT
Statistics
Matches: 121, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 121 1.00
ACGTcount: A:0.11, C:0.12, G:0.51, T:0.26
Consensus pattern (39 bp):
GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
Found at i:87526967 original size:12 final size:12
Alignment explanation
Indices: 87526929--87526960 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
87526919 GGTTGGCTGG
87526929 TGGGGATGCGGA
1 TGGGGATGCGGA
*
87526941 TGCGGATGCGGA
1 TGGGGATGCGGA
87526953 TGGGGATG
1 TGGGGATG
87526961 GTGATGGTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.09, G:0.56, T:0.19
Consensus pattern (12 bp):
TGGGGATGCGGA
Found at i:87527982 original size:30 final size:30
Alignment explanation
Indices: 87527946--87528004 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
87527936 AATTTTAAAT
*
87527946 TAATAAAATTATATTTTAACTCTTTAAAAA
1 TAATAAAATTATAATTTAACTCTTTAAAAA
* * *
87527976 TAATAAAATTTTAATTTAATTTTTTAAAA
1 TAATAAAATTATAATTTAACTCTTTAAAA
87528005 TTTATATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (30 bp):
TAATAAAATTATAATTTAACTCTTTAAAAA
Found at i:87528678 original size:30 final size:29
Alignment explanation
Indices: 87528617--87528701 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
87528607 AAAATAAAAT
* * * *
87528617 TTTTTTACTAATTTAATTGATTTT-TATA
1 TTTTTTAATAATTTATTTTATTTTATAAA
87528645 TTTTTTAAATAATTTATTTTATTTTATAAA
1 TTTTTT-AATAATTTATTTTATTTTATAAA
*
87528675 TTTTTTAATTATTTATTTTATTATTAT
1 TTTTTTAATAATTTATTTTATT-TTAT
87528702 TAGAATAACA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
28 6 0.12
29 30 0.61
30 13 0.27
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (29 bp):
TTTTTTAATAATTTATTTTATTTTATAAA
Found at i:87528692 original size:15 final size:15
Alignment explanation
Indices: 87528656--87528702 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
87528646 TTTTTAAATA
87528656 ATTTATTTTATT-TT
1 ATTTATTTTATTATT
**
87528670 ATAAATTTT-TTAATT
1 ATTTATTTTATT-ATT
87528685 ATTTATTTTATTATT
1 ATTTATTTTATTATT
87528700 ATT
1 ATT
87528703 AGAATAACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
13 2 0.08
14 7 0.27
15 15 0.58
16 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTATTTTATTATT
Found at i:87529288 original size:20 final size:20
Alignment explanation
Indices: 87529252--87529336 Score: 70
Period size: 20 Copynumber: 4.2 Consensus size: 20
87529242 ATTCTAATTT
*
87529252 TTTTAAA-ATACAT-ATATA
1 TTTTAAATATATATAATATA
*
87529270 TTTTAAATTTATATAATATTAA
1 TTTTAAATATATATAATA-T-A
*
87529292 ATTTAAATATATATAA-ATA
1 TTTTAAATATATATAATATA
*
87529311 TTTTTAAAAATATAATAATA-A
1 -TTTTAAATATAT-ATAATATA
87529332 TTTTA
1 TTTTA
87529337 TATTTTATAT
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
18 7 0.13
19 5 0.09
20 19 0.35
21 7 0.13
22 16 0.30
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTTAAATATATATAATATA
Found at i:87529293 original size:16 final size:15
Alignment explanation
Indices: 87529267--87529309 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
87529257 AAATACATAT
* *
87529267 ATATTTTAAATTTAT
1 ATATATTAAATTTAA
87529282 ATAATATTAAATTTAA
1 AT-ATATTAAATTTAA
87529298 ATATATATAAAT
1 ATATAT-TAAAT
87529310 ATTTTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.25
16 18 0.75
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATATTAAATTTAA
Found at i:87529354 original size:6 final size:6
Alignment explanation
Indices: 87529343--87529367 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
87529333 TTTATATTTT
87529343 ATATTA ATATTA ATATTA ATATTA A
1 ATATTA ATATTA ATATTA ATATTA A
87529368 ATTTAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATATTA
Found at i:87529913 original size:10 final size:10
Alignment explanation
Indices: 87529895--87529964 Score: 52
Period size: 10 Copynumber: 7.0 Consensus size: 10
87529885 TTGAAAATAA
*
87529895 TTATTTATTT
1 TTATATATTT
87529905 TTATATATTT
1 TTATATATTT
*
87529915 TTAAAT-TTT
1 TTATATATTT
*
87529924 ATTATTTATTT
1 -TTATATATTT
* * *
87529935 TTAAAAATTG
1 TTATATATTT
* *
87529945 TTACACATTT
1 TTATATATTT
87529955 TTATATATTT
1 TTATATATTT
87529965 CTTTGAATTT
Statistics
Matches: 45, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
9 3 0.07
10 39 0.87
11 3 0.07
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (10 bp):
TTATATATTT
Found at i:87529916 original size:30 final size:30
Alignment explanation
Indices: 87529876--87529937 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
87529866 TTAGTTTTAC
*
87529876 TATATTTTTTTGAAA-ATAATTATTTATTTT
1 TATATATTTTT-AAATATAATTATTTATTTT
* *
87529906 TATATATTTTTAAATTTTATTATTTATTTT
1 TATATATTTTTAAATATAATTATTTATTTT
87529936 TA
1 TA
87529938 AAAATTGTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 3 0.11
30 25 0.89
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (30 bp):
TATATATTTTTAAATATAATTATTTATTTT
Found at i:87530639 original size:18 final size:21
Alignment explanation
Indices: 87530602--87530640 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 21
87530592 CAACATTCTA
87530602 CTGTTACTTTCTTCTTCCTTT
1 CTGTTACTTTCTTCTTCCTTT
87530623 CTGTT-CTTT-TT-TTCCTTT
1 CTGTTACTTTCTTCTTCCTTT
87530641 TTATTTCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
20 4 0.22
21 5 0.28
ACGTcount: A:0.03, C:0.26, G:0.05, T:0.67
Consensus pattern (21 bp):
CTGTTACTTTCTTCTTCCTTT
Found at i:87533877 original size:49 final size:49
Alignment explanation
Indices: 87533800--87534158 Score: 560
Period size: 49 Copynumber: 7.4 Consensus size: 49
87533790 ATCAAGATTC
* *
87533800 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
87533849 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87533898 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
87533947 GCGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATG-GATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87533995 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87534044 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
87534093 GTGAAAGTGTATGTATATGTGAT-AGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
87534141 GTGAAAGTGTATATATAT
1 GTGAAAATGTATGTATAT
87534159 ATGTGGTAAA
Statistics
Matches: 294, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
48 85 0.29
49 209 0.71
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:87534044 original size:97 final size:98
Alignment explanation
Indices: 87533800--87534158 Score: 569
Period size: 97 Copynumber: 3.7 Consensus size: 98
87533790 ATCAAGATTC
* *
87533800 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
1 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
87533865 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
87533898 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATGTAT
1 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
*
87533963 ATGTGATGAGGCCTAATGGCCGATG-GATGAAT
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * *
87533995 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTATATGTAT
1 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
*
87534060 ATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
87534093 GTGAAAGTGTATGTATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
87534157 AT
66 AT
87534159 ATGTGGTAAA
Statistics
Matches: 242, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
97 127 0.52
98 115 0.48
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (98 bp):
GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:87534072 original size:146 final size:147
Alignment explanation
Indices: 87533802--87534178 Score: 578
Period size: 146 Copynumber: 2.6 Consensus size: 147
87533792 CAAGATTCGT
* * *
87533802 GAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTATAT
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATAT
* *
87533867 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATATATATGTGATAAGGCCTAATG
87533932 GCCGATGCGATGAATGC
131 GCCGATGCGATGAATGC
87533949 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATG-GATGAATGTGAAAGTATATGTATAT
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATAT
* * *
87534013 GTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTATATGTATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATATATATGTGATAAGGCCTAATG
* * *
87534078 GCCGATGTGGTGAATGT
131 GCCGATGCGATGAATGC
* *
87534095 GAAAGTGTATGTATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATGTAT
* * *
87534159 ATGTGGTAAAGCCGAATGGC
64 ATGTGATAAGGCCTAATGGC
87534179 TAATGTGAAT
Statistics
Matches: 211, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
145 17 0.08
146 130 0.62
147 38 0.18
148 26 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (147 bp):
GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATATATATGTGATAAGGCCTAATG
GCCGATGCGATGAATGC
Found at i:87536180 original size:40 final size:40
Alignment explanation
Indices: 87536134--87536434 Score: 299
Period size: 40 Copynumber: 7.5 Consensus size: 40
87536124 TGAATGATAC
**
87536134 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
87536174 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
87536214 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* *
87536254 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
87536293 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * * *
87536333 CCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * **
87536373 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
87536413 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
87536435 ATCATGCTGG
Statistics
Matches: 233, Mismatches: 20, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
39 24 0.10
40 203 0.87
41 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:87540349 original size:49 final size:49
Alignment explanation
Indices: 87540274--87540627 Score: 551
Period size: 49 Copynumber: 7.4 Consensus size: 49
87540264 ATCAAGATTC
*
87540274 GTGAAAATGTA--TATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
87540321 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGA-GTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87540369 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
87540418 GCGAAAATGTATGTATATGTGAT-AGGCCTAATGGCCGATG-GATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
87540465 GTG-AAA-GTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87540512 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
87540561 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
87540610 GTGAAAGTGTATATATAT
1 GTGAAAATGTATGTATAT
87540628 ATGTGGTAAA
Statistics
Matches: 287, Mismatches: 13, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
45 15 0.05
46 20 0.07
47 29 0.10
48 65 0.23
49 158 0.55
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:87542655 original size:40 final size:39
Alignment explanation
Indices: 87542600--87542832 Score: 195
Period size: 40 Copynumber: 5.9 Consensus size: 39
87542590 TGAATGATAC
*
87542600 CCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGATCCGAAGGCATTTGTGCTAGTG-ATATAT
* * *
87542639 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGATCCGAAGGCATTTGTGCT-AG-TGATATAT
* * * * *
87542679 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGATCCGAAGGCATTTGTGCTAGT-GATATAT
* * *
87542719 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGATCCGAAG-GCATTTGTGCTAGTGATATAT
* * * *
87542758 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGATCCGAAG-GCATTTGTGCTAGTGATATAT
* * * *
87542798 CCGGACTAAGTTCCG-GGAGCATTCGTGCTAGTGAT
1 CCGGGCTAAGATCCGAAG-GCATTTGTGCTAGTGAT
87542833 GTACCGACTA
Statistics
Matches: 169, Mismatches: 18, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 50 0.30
40 116 0.69
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (39 bp):
CCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGATATAT
Found at i:87542799 original size:79 final size:74
Alignment explanation
Indices: 87542716--87542923 Score: 245
Period size: 79 Copynumber: 2.9 Consensus size: 74
87542706 CTTGTGGTTA
87542716 TATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCAT
1 TATCCGGCTAAGTTCCG-AGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA-
87542781 TCGTGCTAGTGATG
64 T-GT-CTA-TGATG
*
87542795 TATCCGGACTAAGTTCCGGGAGCATTCGTGCTAGTGATGTA-CC-GACT-AG-TCCG-AGAGCAT
1 TATCCGG-CTAAGTTCCGAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCAT
87542855 GTCTATGATG
65 GTCTATGATG
* * * * *
87542865 TATCC-GAT-AGTTCC-AGA-CATTCGTGCTAGTGATGCATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGCTAAGTTCCGAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
87542924 ATCATGCTGG
Statistics
Matches: 116, Mismatches: 7, Indels: 21
0.81 0.05 0.15
Matches are distributed among these distances:
65 18 0.16
66 4 0.03
67 9 0.08
68 2 0.02
69 4 0.03
70 16 0.14
71 3 0.03
72 2 0.02
73 1 0.01
74 6 0.05
75 4 0.03
76 2 0.02
77 4 0.03
78 2 0.02
79 29 0.25
80 10 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (74 bp):
TATCCGGCTAAGTTCCGAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATG
TCTATGATG
Found at i:87542829 original size:39 final size:39
Alignment explanation
Indices: 87542716--87542923 Score: 246
Period size: 40 Copynumber: 5.6 Consensus size: 39
87542706 CTTGTGGTTA
87542716 TATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCG-AGAGCATTCGTGCTAGTGATG
87542755 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCG-AGAGCATTCGTGCTAGTGATG
*
87542795 TATCCGGACTAAGTTCCGGGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAGAGCATTCGTGCTAGTGATG
87542834 TA-CC-GACT-AG-TCCGAGAGCA-T-GT-CTA-TGATG
1 TATCCGGACTAAGTTCCGAGAGCATTCGTGCTAGTGATG
87542865 TATCC-GA-T-AGTTCC-AGA-CATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAGAGCATTCGTGCTAGTGATG
* * * *
87542899 CATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCG-AGAGCA
87542924 ATCATGCTGG
Statistics
Matches: 150, Mismatches: 6, Indels: 25
0.83 0.03 0.14
Matches are distributed among these distances:
30 2 0.01
31 14 0.09
32 12 0.08
33 5 0.03
34 10 0.07
35 10 0.07
36 3 0.02
37 8 0.05
38 2 0.01
39 32 0.21
40 52 0.35
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATCCGGACTAAGTTCCGAGAGCATTCGTGCTAGTGATG
Found at i:87546814 original size:49 final size:49
Alignment explanation
Indices: 87546757--87547106 Score: 499
Period size: 49 Copynumber: 7.4 Consensus size: 49
87546747 ATCAAGATTC
*
87546757 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
87546806 GTGAAAATGTAT-TATATGTG--AAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
87546852 GTGAAAATGTATATATA--TG---AGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
87546896 GCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGA--TGATGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
87546943 GTG-AAA-GTATATTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATA-TATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
87546991 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
87547040 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
87547089 GTGAAAGTGTATATATAT
1 GTGAAAATGTATATATAT
87547107 ATGTGGTAAA
Statistics
Matches: 276, Mismatches: 14, Indels: 22
0.88 0.04 0.07
Matches are distributed among these distances:
44 39 0.14
45 6 0.02
46 68 0.25
47 13 0.05
48 18 0.07
49 129 0.47
50 3 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:87546865 original size:95 final size:97
Alignment explanation
Indices: 87546757--87547106 Score: 497
Period size: 95 Copynumber: 3.7 Consensus size: 97
87546747 ATCAAGATTC
*
87546757 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT-TAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
87546821 ATGTG-AAGGCCTAATGGCCGATGTGATGAAT
66 ATGTGAAAGGCCTAATGGCCGATGTGATGAAT
* *
87546852 GTGAAAATGTATATATA--TG---AGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATGTAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
87546912 ATGTGATAAGGCCTAATGGCCGA--TGATGAAT
66 ATGTGA-AAGGCCTAATGGCCGATGTGATGAAT
* * *
87546943 GTG-AAA-GTATATTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTATATGTA
1 GTGAAAATGTATA-TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTA
*
87547006 TATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
65 TATGTGA-AAGGCCTAATGGCCGATGTGATGAAT
* * * *
87547040 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
87547105 AT
66 AT
87547107 ATGTGGTAAA
Statistics
Matches: 229, Mismatches: 13, Indels: 23
0.86 0.05 0.09
Matches are distributed among these distances:
89 5 0.02
90 42 0.18
91 19 0.08
92 2 0.01
93 18 0.08
95 76 0.33
97 10 0.04
98 53 0.23
99 4 0.02
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (97 bp):
GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
ATGTGAAAGGCCTAATGGCCGATGTGATGAAT
Found at i:87546917 original size:139 final size:144
Alignment explanation
Indices: 87546759--87547106 Score: 521
Period size: 139 Copynumber: 2.4 Consensus size: 144
87546749 CAAGATTCGT
* * *
87546759 GAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATTATATG
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATATG
*
87546824 TG-AAGGCCTAATGGCCGATGTGATGAATGTG-AA-A-ATGTATATAT-ATGAGGCCTAATGGCC
66 TGAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGATATGTATATATGATAAGGCCTAATGGCC
87546884 GATGCGATGAATGC
131 GATGCGATGAATGC
*
87546898 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGA--TGATGAATGTGAAAGTATATTATATG
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATATG
* *
87546961 TGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTATATGTATATGTGATAAGGCCTAATGG
66 TGA-AAGGCCTAATGGCCGATGTGATGAATGTGAAAG-ATATGTATATATGATAAGGCCTAATGG
* * *
87547026 CCGATGTGGTGAATGT
129 CCGATGCGATGAATGC
*
87547042 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATAT
87547107 ATGTGGTAAA
Statistics
Matches: 187, Mismatches: 12, Indels: 12
0.89 0.06 0.06
Matches are distributed among these distances:
137 26 0.14
139 63 0.34
140 2 0.01
142 1 0.01
143 9 0.05
144 62 0.33
146 19 0.10
147 5 0.03
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (144 bp):
GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATATG
TGAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGATATGTATATATGATAAGGCCTAATGGCC
GATGCGATGAATGC
Found at i:87548993 original size:13 final size:16
Alignment explanation
Indices: 87548962--87548994 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
87548952 CCCTACGGGT
87548962 TAATAAAACATAATAA
1 TAATAAAACATAATAA
87548978 TAATAAAA-ATATATAA
1 TAATAAAACATA-ATAA
87548994 T
1 T
87548995 TTTAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
TAATAAAACATAATAA
Found at i:87554248 original size:49 final size:49
Alignment explanation
Indices: 87554171--87554530 Score: 569
Period size: 49 Copynumber: 7.4 Consensus size: 49
87554161 ATCAAGATTC
* *
87554171 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
87554220 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87554269 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
87554318 GCG-AAATGTATGTATATGTGATAAGGCCTAATGGCCGATGGGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87554366 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87554415 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
87554464 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
87554513 GTGAAAGTGTATATATAT
1 GTGAAAATGTATGTATAT
87554531 ATGTGGTAAA
Statistics
Matches: 293, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
48 44 0.15
49 249 0.85
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:87554562 original size:195 final size:194
Alignment explanation
Indices: 87554184--87554562 Score: 564
Period size: 195 Copynumber: 1.9 Consensus size: 194
87554174 AAAATGTATA
* *
87554184 TATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATGTATATGTGATAAGGCC
*
87554249 TAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGAT
66 TAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGCGAT
* * * *
87554314 GAATGCGAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGGGATGAATGTGAAAGTATATG
131 GAATGCGAAATGTATATATATGTGATAAAGCCGAATGGCCAAT-GGATGAATGTGAAAGTATATG
* *
87554379 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTATATGTATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATGTATATGTGATAAGGCC
* * * *
87554444 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGAT
66 TAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGCGAT
* * *
87554509 GAATGTGAAAGTGTATATATATATGTGGTAAAGCCGAATGGCTAAT-G-TGAATGT
131 GAATGCGAAA-TG--TATATATATGTGATAAAGCCGAATGGCCAATGGATGAATGT
87554563 TGTAACATGT
Statistics
Matches: 165, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
195 137 0.83
196 3 0.02
198 25 0.15
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (194 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATGTATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGCGAT
GAATGCGAAATGTATATATATGTGATAAAGCCGAATGGCCAATGGATGAATGTGAAAGTATATG
Found at i:87556552 original size:40 final size:40
Alignment explanation
Indices: 87556506--87556806 Score: 290
Period size: 40 Copynumber: 7.5 Consensus size: 40
87556496 TGAATGATAC
**
87556506 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
87556546 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
87556586 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* *
87556626 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
87556665 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * * *
87556705 CCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * * **
87556745 CCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
87556785 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
87556807 ATCATGCTGG
Statistics
Matches: 231, Mismatches: 22, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
39 24 0.10
40 201 0.87
41 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:87560715 original size:49 final size:49
Alignment explanation
Indices: 87560638--87560998 Score: 551
Period size: 49 Copynumber: 7.4 Consensus size: 49
87560628 ATCAAGATTC
* *
87560638 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
87560687 GTGAAAATGTATGTATATGTGATAAGGCCTAATGACCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87560736 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87560785 GCGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGGGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87560834 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
87560883 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
87560932 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
87560981 GTGAAAGTGTATATATAT
1 GTGAAAATGTATGTATAT
87560999 ATGTGGTAAA
Statistics
Matches: 292, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 292 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:87568614 original size:25 final size:25
Alignment explanation
Indices: 87568585--87568745 Score: 207
Period size: 25 Copynumber: 6.4 Consensus size: 25
87568575 CGAAACCAAA
* *
87568585 CCTTTGTGGCGAATTATCTGAAAAG
1 CCTTTGTGGTGAATTATCTAAAAAG
* **
87568610 CCTTTGTGGTGAGTTATCTGTAAAG
1 CCTTTGTGGTGAATTATCTAAAAAG
* * *
87568635 CCTTTATAGTGAATTATCTGAAAAG
1 CCTTTGTGGTGAATTATCTAAAAAG
87568660 CCTTTGTGGT-AAGTTATCTAAAAAG
1 CCTTTGTGGTGAA-TTATCTAAAAAG
*
87568685 CCTTTGTGGTGAGTTATCTAAAAAG
1 CCTTTGTGGTGAATTATCTAAAAAG
*
87568710 CCTTTGTGGCGAATTATCTAAAAAG
1 CCTTTGTGGTGAATTATCTAAAAAG
*
87568735 TCTTTGTGGTG
1 CCTTTGTGGTG
87568746 TATTGTATGG
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
24 2 0.02
25 116 0.97
26 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (25 bp):
CCTTTGTGGTGAATTATCTAAAAAG
Found at i:87568865 original size:47 final size:47
Alignment explanation
Indices: 87568796--87568890 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
87568786 AAGTGGCGAG
87568796 TGGTTAGACCACCTTTGCAGTGAAATCTGGGTATGCATTTGAATAAT
1 TGGTTAGACCACCTTTGCAGTGAAATCTGGGTATGCATTTGAATAAT
87568843 TGGTTAGACCACCTTTGCAGTGAAATCTGGGTATGCATTTGAATAAT
1 TGGTTAGACCACCTTTGCAGTGAAATCTGGGTATGCATTTGAATAAT
87568890 T
1 T
87568891 TTCTGAATAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (47 bp):
TGGTTAGACCACCTTTGCAGTGAAATCTGGGTATGCATTTGAATAAT
Found at i:87575681 original size:12 final size:11
Alignment explanation
Indices: 87575657--87575686 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
87575647 CATTTTGTTA
87575657 TTTAGTTTCTTT
1 TTTA-TTTCTTT
87575669 TTTATTTCTTT
1 TTTATTTCTTT
87575680 TTTATTT
1 TTTATTT
87575687 TTGTTTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.10, C:0.07, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTATTTCTTT
Found at i:87576626 original size:2 final size:2
Alignment explanation
Indices: 87576619--87576658 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
87576609 TTATCTCTTT
87576619 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
87576659 TAGGTTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:87579326 original size:5 final size:5
Alignment explanation
Indices: 87579311--87579374 Score: 64
Period size: 5 Copynumber: 13.0 Consensus size: 5
87579301 ATTCATCCCA
*
87579311 TGCATT TGCAT TGCAT TGCA- T-CAT GTGCAT TGCAT TACAT TGCA- T-CAT
1 TGCA-T TGCAT TGCAT TGCAT TGCAT -TGCAT TGCAT TGCAT TGCAT TGCAT
87579359 GTGCAT TGCAT TGCAT
1 -TGCAT TGCAT TGCAT
87579375 CATTTGCATT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
3 4 0.08
4 2 0.04
5 34 0.68
6 10 0.20
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (5 bp):
TGCAT
Found at i:87579339 original size:19 final size:19
Alignment explanation
Indices: 87579317--87579384 Score: 82
Period size: 19 Copynumber: 3.3 Consensus size: 19
87579307 CCCATGCATT
87579317 TGCATTGCATTGCATCATG
1 TGCATTGCATTGCATCATG
87579336 TGCATTGCATTACATTGCATCATG
1 TGCATTG-----CATTGCATCATG
*
87579360 TGCATTGCATTGCATCATT
1 TGCATTGCATTGCATCATG
87579379 TGCATT
1 TGCATT
87579385 AGATTTTCCC
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
19 24 0.56
24 19 0.44
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.40
Consensus pattern (19 bp):
TGCATTGCATTGCATCATG
Found at i:87579341 original size:14 final size:14
Alignment explanation
Indices: 87579322--87579369 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
87579312 GCATTTGCAT
87579322 TGCATTGCATCATG
1 TGCATTGCATCATG
87579336 TGCATTG---CAT-
1 TGCATTGCATCATG
*
87579346 TACATTGCATCATG
1 TGCATTGCATCATG
87579360 TGCATTGCAT
1 TGCATTGCAT
87579370 TGCATCATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 6 0.21
11 3 0.11
13 3 0.11
14 16 0.57
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (14 bp):
TGCATTGCATCATG
Found at i:87579343 original size:24 final size:24
Alignment explanation
Indices: 87579311--87579374 Score: 110
Period size: 24 Copynumber: 2.6 Consensus size: 24
87579301 ATTCATCCCA
87579311 TGCATTTGCATTGCATTGCATCATG
1 TGCA-TTGCATTGCATTGCATCATG
*
87579336 TGCATTGCATTACATTGCATCATG
1 TGCATTGCATTGCATTGCATCATG
87579360 TGCATTGCATTGCAT
1 TGCATTGCATTGCAT
87579375 CATTTGCATT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
24 33 0.89
25 4 0.11
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (24 bp):
TGCATTGCATTGCATTGCATCATG
Found at i:87582105 original size:14 final size:13
Alignment explanation
Indices: 87582070--87582099 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
87582060 GACTTTCAAA
87582070 AAAAAAAGA-AAG
1 AAAAAAAGAGAAG
87582082 AAAAAAAGAGAAG
1 AAAAAAAGAGAAG
87582095 AAAAA
1 AAAAA
87582100 GGAGAGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAGAAG
Found at i:87583240 original size:56 final size:58
Alignment explanation
Indices: 87583144--87583255 Score: 156
Period size: 56 Copynumber: 1.9 Consensus size: 58
87583134 TATATAATAA
87583144 CACATCTAGTTAGGAGCATTTGATTCATTTCATAACATCCTAATTATTTGACATAAAACAT
1 CACATCTAGTTAGGAGCATTTG--T-ATTTCATAACATCCTAATTATTTGACATAAAACAT
* * *
87583205 CACATTTAGTTAGGAGCATTTG-A-TTCATAGCATCCTAATTATTTGGCATAA
1 CACATCTAGTTAGGAGCATTTGTATTTCATAACATCCTAATTATTTGACATAA
87583256 GCATGGATAC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
56 26 0.54
57 1 0.02
61 21 0.44
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (58 bp):
CACATCTAGTTAGGAGCATTTGTATTTCATAACATCCTAATTATTTGACATAAAACAT
Found at i:87583483 original size:44 final size:44
Alignment explanation
Indices: 87583326--87584030 Score: 295
Period size: 44 Copynumber: 15.3 Consensus size: 44
87583316 CGGTGAATTC
* * *
87583326 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGAT
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTC-AAAGTT
* * * * *
87583370 AGCAAATCATATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAA-TT
1 A-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG---G--TC-AAAGTT
* * * *
87583420 AC-AGATCTTATCTCTCTGAAGTTACAGTAGAACAGGTCAAAGTT
1 ACAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCAAAGTT
* ** ** *
87583464 ACAAGTCTTATCTCCCTGAAGTTGAAGTGGAGCATATTGAAGAT
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCAAAGTT
* * * * *
87583508 AGCAAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTAAA-TT
1 A-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG---G--TC-AAAGTT
* * *
87583558 AC-AGACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTT
1 ACAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCAAAGTT
* * * * *
87583602 ACAAGTCTTATCTCCTTGAAGTTACAGTGGAGCA-GACTGAAGAT
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTC-AAAGTT
* * * * *
87583646 AGAAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAA-TT
1 A-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG---G--TC-AAAGTT
* * * *
87583696 AC-AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAAGTCGAAGTT
1 ACAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCAAAGTT
* * *
87583740 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGAT
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTC-AAAGTT
* * * * * *
87583784 AGCAAATCATATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTAAA-TT
1 A-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG---G--TC-AAAGTT
* * * * * *
87583834 AC-AGATCTTATCTCTCTAAAGTTGCAATAGAGTAGGTCGAAGTT
1 ACAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCAAAGTT
* * * *
87583878 ACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCA-GACTGAAGAT
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTC-AAAGTT
* * * * * * *
87583922 AGCAAATCATATTTTCCTGAAGGTGCAGTGGAACAGATTGAAGCTAAA-TT
1 A-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG---G--TC-AAAGTT
* * *
87583972 AC-AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTT
1 ACAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCAAAGTT
87584016 ACAAGTCTTATCTCC
1 ACAAGTCTTATCTCC
87584031 TTGTGCTTAC
Statistics
Matches: 490, Mismatches: 118, Indels: 106
0.69 0.17 0.15
Matches are distributed among these distances:
43 18 0.04
44 158 0.32
45 148 0.30
46 5 0.01
48 5 0.01
49 128 0.26
50 10 0.02
51 18 0.04
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (44 bp):
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCAAAGTT
Found at i:87583494 original size:138 final size:138
Alignment explanation
Indices: 87583326--87584030 Score: 1189
Period size: 138 Copynumber: 5.1 Consensus size: 138
87583316 CGGTGAATTC
*
87583326 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGAAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
* *
87583391 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTACAGTAGAACAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
*
87583456 TCAAAGTT
131 TCGAAGTT
* * * *
87583464 ACAAGTCTTATCTCCCTGAAGTTGAAGTGGAGCATATTGAAGATAGCAAATCTTATTTCCCTAAA
1 ACAAGTCTTATCTCCCTGAAGTTGAAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
*
87583529 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGACCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
*
87583594 TCAAAGTT
131 TCGAAGTT
* * *
87583602 ACAAGTCTTATCTCCTTGAAGTT-ACAGTGGAGCAGACTGAAGATAGAAAATCTTATTTCCCTGA
1 ACAAGTCTTATCTCCCTGAAGTTGA-AGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGA
*
87583666 AGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAA
65 AGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
87583731 GTCGAAGTT
130 GTCGAAGTT
* *
87583740 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTAAA
1 ACAAGTCTTATCTCCCTGAAGTTGAAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
* * *
87583805 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTAAAGTTGCAATAGAGTAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
87583870 TCGAAGTT
131 TCGAAGTT
*
87583878 ACAAGTCTTATCTCCCTGAAGTTGCAA-TGGAGCAGACTGAAGATAGCAAATCATATTTTCCTGA
1 ACAAGTCTTATCTCCCTGAAGTTG-AAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGA
*
87583942 AGGTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
65 AGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
87584007 GTCGAAGTT
130 GTCGAAGTT
87584016 ACAAGTCTTATCTCC
1 ACAAGTCTTATCTCC
87584031 TTGTGCTTAC
Statistics
Matches: 532, Mismatches: 32, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
137 1 0.00
138 530 1.00
139 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (138 bp):
ACAAGTCTTATCTCCCTGAAGTTGAAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
TCGAAGTT
Found at i:87584192 original size:88 final size:87
Alignment explanation
Indices: 87584043--87584232 Score: 310
Period size: 88 Copynumber: 2.2 Consensus size: 87
87584033 GTGCTTACAA
*
87584043 GGAGCAGATCGAAA-ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAGATCCAAGATG
1 GGAGCAGATC-AAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATG
*
87584107 ATTTGGCATCTCTGTATCAGGCGG
65 ATTTGGCATCTCTGTAGC-GGCGG
87584131 GGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATGA
1 GGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATGA
*
87584196 TTTGGCGTCTCTGTAGCGGCGG
66 TTTGGCATCTCTGTAGCGGCGG
* *
87584218 AGAGCAGATCGAAGA
1 GGAGCAGATCAAAGA
87584233 TAACAGATTT
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
87 21 0.22
88 75 0.78
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (87 bp):
GGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATGA
TTTGGCATCTCTGTAGCGGCGG
Found at i:87584248 original size:44 final size:44
Alignment explanation
Indices: 87584194--87584691 Score: 736
Period size: 44 Copynumber: 11.4 Consensus size: 44
87584184 AATCCAAGAT
87584194 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
87584238 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
87584282 GATTTGGCGTCTCTGTAGCGGCGGAGAGCGGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
87584326 GATTTGGCGTCTCTGTAGCGGCAGAAAGTAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
87584366 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
87584410 GATTTGGCATCTCTGTAGCGGCAGG-GAACAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGC-GGAGAGCAGATCGAAGATAACA
* * * *
87584454 AATTTGGCGTCTCTATAGTGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
87584498 GATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
87584542 GATTTGGCGTCACTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
87584586 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** * * * *
87584630 GATTTGGCGTCTCTGTATTGTCAAGAGAGCAGATCAAAGATGACA
1 GATTTGGCGTCTCTGTAGCGGC-GGAGAGCAGATCGAAGATAACA
87584675 GATTTGGCGTCTCTGTA
1 GATTTGGCGTCTCTGTA
87584692 TTTGCAGAGA
Statistics
Matches: 412, Mismatches: 35, Indels: 13
0.90 0.08 0.03
Matches are distributed among these distances:
40 37 0.09
43 2 0.00
44 337 0.82
45 36 0.09
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.23
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:87585387 original size:12 final size:11
Alignment explanation
Indices: 87585363--87585392 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
87585353 CATTTTGTTC
87585363 TTTAGTTTCTTT
1 TTTA-TTTCTTT
87585375 TTTATTTCTTT
1 TTTATTTCTTT
87585386 TTTATTT
1 TTTATTT
87585393 TTGTTTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.10, C:0.07, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTATTTCTTT
Found at i:87587440 original size:45 final size:44
Alignment explanation
Indices: 87587338--87587446 Score: 148
Period size: 44 Copynumber: 2.5 Consensus size: 44
87587328 CATGTCTTTG
** * *
87587338 ATATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATA
1 ATATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATA
*
87587382 ATATGGACTTACATGGCTCAATCCTGTCTCCAA-GCCATATTTCTA
1 ATATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATA--TATA
87587427 ATATGGACTTACATGGCTCA
1 ATATGGACTTACATGGCTCA
87587447 TTTCTGTTCT
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
43 6 0.10
44 29 0.50
45 23 0.40
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (44 bp):
ATATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATA
Found at i:87588926 original size:2 final size:2
Alignment explanation
Indices: 87588919--87588962 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
87588909 TTATCTCTTT
87588919 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
87588960 TA T
1 TA T
87588963 TAGGTTTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:87591163 original size:16 final size:16
Alignment explanation
Indices: 87591142--87591173 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
87591132 ATTAAGAATG
87591142 TTATTAAATTATATTT
1 TTATTAAATTATATTT
87591158 TTATTAAATTATATTT
1 TTATTAAATTATATTT
87591174 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTAAATTATATTT
Found at i:87591201 original size:26 final size:25
Alignment explanation
Indices: 87591119--87591201 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 25
87591109 TTAATTCATA
*
87591119 TAATAATAATTATATTAAGAATGTTAT
1 TAATAATAATTATATTAA-AAT-ATAT
* * * *
87591146 TAAATTATATTTTTATTAAATTATATT
1 T-AATAATAATTATATTAAAATATA-T
*
87591173 TAATAATAATTATGTTAAAATATGAT
1 TAATAATAATTATATTAAAATAT-AT
87591199 TAA
1 TAA
87591202 ATTATTTATT
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
26 23 0.53
27 6 0.14
28 14 0.33
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (25 bp):
TAATAATAATTATATTAAAATATAT
Found at i:87591441 original size:16 final size:16
Alignment explanation
Indices: 87591420--87591490 Score: 99
Period size: 16 Copynumber: 4.4 Consensus size: 16
87591410 TGAATTACTG
87591420 ATTACAGCAT-TATTCA
1 ATTACAGC-TCTATTCA
87591436 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
*
87591452 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCA
* *
87591468 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCA
87591484 ATTACAG
1 ATTACAG
87591491 TGAACCAAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
15 1 0.02
16 49 0.98
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:87592799 original size:12 final size:12
Alignment explanation
Indices: 87592779--87592810 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
87592769 CTTTAAAAAA
87592779 TTCATTTTATTT
1 TTCATTTTATTT
*
87592791 TTTATTTTATTT
1 TTCATTTTATTT
87592803 TTCATTTT
1 TTCATTTT
87592811 TTTAACTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (12 bp):
TTCATTTTATTT
Found at i:87594102 original size:17 final size:17
Alignment explanation
Indices: 87594080--87594115 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
87594070 ATTTTTAGAG
87594080 AGTTAGAATATGATTTT
1 AGTTAGAATATGATTTT
87594097 AGTTAGAATATGATTTT
1 AGTTAGAATATGATTTT
87594114 AG
1 AG
87594116 CTTTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.19, T:0.44
Consensus pattern (17 bp):
AGTTAGAATATGATTTT
Found at i:87594621 original size:2 final size:2
Alignment explanation
Indices: 87594616--87594652 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
87594606 TATATATTGC
87594616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87594653 ATTATATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:87594850 original size:16 final size:16
Alignment explanation
Indices: 87594825--87594877 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
87594815 CTATAATATA
*
87594825 ATTATATTAATTAATT
1 ATTATTTTAATTAATT
*
87594841 ATTATTTTAAATAA-T
1 ATTATTTTAATTAATT
* *
87594856 ATTGTCTTTCATTAATT
1 ATTAT-TTTAATTAATT
87594873 ATTAT
1 ATTAT
87594878 GAAATAACTG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 5 0.17
16 19 0.66
17 5 0.17
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (16 bp):
ATTATTTTAATTAATT
Found at i:87597891 original size:26 final size:26
Alignment explanation
Indices: 87597836--87597892 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
87597826 TCTTAGATGG
***
87597836 ACCCAACTTAAATCTGACCTAAATGT
1 ACCCAACTTAAATCTGACCTAAACCA
*
87597862 ACCCAACTTAAATCTGACCTAACCCA
1 ACCCAACTTAAATCTGACCTAAACCA
87597888 ACCCA
1 ACCCA
87597893 TTTGATATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.35, G:0.05, T:0.21
Consensus pattern (26 bp):
ACCCAACTTAAATCTGACCTAAACCA
Found at i:87604880 original size:29 final size:30
Alignment explanation
Indices: 87604840--87604900 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
87604830 TAACTTTAGT
**
87604840 CCTTCAAATTTTCTATATTT-TAATTTAAC
1 CCTTCAAATTTTAAATATTTATAATTTAAC
* *
87604869 CCTTCAACTTTTAAATATTTATGATTTAAC
1 CCTTCAAATTTTAAATATTTATAATTTAAC
87604899 CC
1 CC
87604901 CTTTAGTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.31, C:0.20, G:0.02, T:0.48
Consensus pattern (30 bp):
CCTTCAAATTTTAAATATTTATAATTTAAC
Found at i:87607041 original size:9 final size:9
Alignment explanation
Indices: 87607012--87607048 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
87607002 TGAGTTTTCG
87607012 AATTCGAAT
1 AATTCGAAT
*
87607021 AACTCGAAT
1 AATTCGAAT
87607030 AATTCGAAT
1 AATTCGAAT
*
87607039 AATTCAAAT
1 AATTCGAAT
87607048 A
1 A
87607049 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:87608086 original size:5 final size:5
Alignment explanation
Indices: 87608076--87608102 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
87608066 AAAATTTTCA
87608076 ATTCG ATTCG ATTCG ATTCG ATTCG AT
1 ATTCG ATTCG ATTCG ATTCG ATTCG AT
87608103 CGAATGCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (5 bp):
ATTCG
Found at i:87611556 original size:15 final size:14
Alignment explanation
Indices: 87611523--87611589 Score: 55
Period size: 14 Copynumber: 4.5 Consensus size: 14
87611513 ACCGTAAACA
* *
87611523 TTATTAAAATTGTT
1 TTATTAAATTTATT
87611537 TTATTAAATTTATAT
1 TTATTAAATTTAT-T
87611552 TTATTACAATGTTATT
1 TTATTA-AAT-TTATT
*
87611568 TT-TTAAATAATATT
1 TTATTAAAT-TTATT
87611582 ATTATTAA
1 -TTATTAA
87611590 GTGAGTTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
14 18 0.41
15 12 0.27
16 10 0.23
17 4 0.09
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (14 bp):
TTATTAAATTTATT
Found at i:87611969 original size:2 final size:2
Alignment explanation
Indices: 87611962--87611998 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
87611952 AAATTGTGTA
87611962 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87611999 AGTACGAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:87617200 original size:22 final size:22
Alignment explanation
Indices: 87617172--87617213 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
87617162 TTGTATGAGA
*
87617172 TTGCACTTCGGTGCCTCTGTAT
1 TTGCACTACGGTGCCTCTGTAT
87617194 TTGCACTACGGTGCCTCTGT
1 TTGCACTACGGTGCCTCTGT
87617214 TAGTATTTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.10, C:0.29, G:0.24, T:0.38
Consensus pattern (22 bp):
TTGCACTACGGTGCCTCTGTAT
Found at i:87618232 original size:16 final size:16
Alignment explanation
Indices: 87618211--87618250 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
87618201 CACAGGCTGT
*
87618211 CACACGGCGTGTGCCG
1 CACACGGCGTATGCCG
87618227 CACACGGCGTATGCCG
1 CACACGGCGTATGCCG
87618243 CACACGGC
1 CACACGGC
87618251 CACCCCACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.17, C:0.40, G:0.33, T:0.10
Consensus pattern (16 bp):
CACACGGCGTATGCCG
Found at i:87625031 original size:27 final size:27
Alignment explanation
Indices: 87624982--87625091 Score: 152
Period size: 27 Copynumber: 4.1 Consensus size: 27
87624972 AGGATGCGTC
* * *
87624982 CTGGTGGCTATGCTACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
87625009 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
87625036 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* *
87625063 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
87625089 CTG
1 CTG
87625092 CCAGCCATGC
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
26 15 0.20
27 59 0.78
28 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:87632930 original size:27 final size:27
Alignment explanation
Indices: 87632881--87632990 Score: 134
Period size: 27 Copynumber: 4.1 Consensus size: 27
87632871 AGGATGCGTC
* * **
87632881 CTGGTGGCTATGCTACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
87632908 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
*
87632935 CTGGTGGCTCTGTCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* *
87632962 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
87632988 CTG
1 CTG
87632991 CCAGCCATGC
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 15 0.20
27 58 0.77
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:87632965 original size:54 final size:53
Alignment explanation
Indices: 87632881--87632990 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
87632871 AGGATGCGTC
*
87632881 CTGGTGGCTATGCTACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCTACAATTATCTAATCTGGTGACTCTGCCACAT-TATCTGTT
* ** *
87632935 CTGGTGGCTCTG-TCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCT-ACAATTATCTAATCTGGTGACTCTGCCACATTATCTGTT
87632988 CTG
1 CTG
87632991 CCAGCCATGC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
53 12 0.24
54 38 0.76
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATGCTACAATTATCTAATCTGGTGACTCTGCCACATTATCTGTT
Found at i:87639613 original size:28 final size:29
Alignment explanation
Indices: 87639557--87639614 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
87639547 GATGGGAGGG
* **
87639557 GAGTAAATGTTTTGGGGGGAAGTGAGAGA
1 GAGTAAAAGTTTTGGGGAAAAGTGAGAGA
87639586 GAGTAAAAGTTTTGGGGAAAAGT-AGAGA
1 GAGTAAAAGTTTTGGGGAAAAGTGAGAGA
87639614 G
1 G
87639615 GTTTGGGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.36, C:0.00, G:0.41, T:0.22
Consensus pattern (29 bp):
GAGTAAAAGTTTTGGGGAAAAGTGAGAGA
Found at i:87647376 original size:22 final size:22
Alignment explanation
Indices: 87647339--87647390 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
87647329 TTGCACTTCA
87647339 GTGCCTCTG--TTTGCACT-TT
1 GTGCCTCTGTATTTGCACTATT
*
87647358 GATGCGTCTGTATTTGCACTATT
1 G-TGCCTCTGTATTTGCACTATT
87647381 GTGCCTCTGT
1 GTGCCTCTGT
87647391 TAGCATGTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 1 0.04
20 7 0.26
22 16 0.59
23 3 0.11
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.44
Consensus pattern (22 bp):
GTGCCTCTGTATTTGCACTATT
Found at i:87649752 original size:24 final size:26
Alignment explanation
Indices: 87649698--87649753 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 26
87649688 CATAATATGG
87649698 CTTA-AAAACCAAACACATATTTAAA
1 CTTATAAAACCAAACACATATTTAAA
*
87649723 -TGTATAAAACCAACCA-AT-TTTAAA
1 CT-TATAAAACCAAACACATATTTAAA
87649747 CTTATAA
1 CTTATAA
87649754 TCTCATTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
24 12 0.44
25 5 0.19
26 10 0.37
ACGTcount: A:0.52, C:0.18, G:0.02, T:0.29
Consensus pattern (26 bp):
CTTATAAAACCAAACACATATTTAAA
Found at i:87650577 original size:2 final size:2
Alignment explanation
Indices: 87650570--87650627 Score: 86
Period size: 2 Copynumber: 30.0 Consensus size: 2
87650560 ATATTTGCAC
87650570 AT AT AT AT -T CAT A- AT AT A- AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87650610 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
87650628 CAATTCAATT
Statistics
Matches: 52, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
1 3 0.06
2 48 0.92
3 1 0.02
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:87651355 original size:16 final size:18
Alignment explanation
Indices: 87651330--87651373 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
87651320 TCTCCTTCTT
87651330 TTTTTCTTTCTTTC-CTC
1 TTTTTCTTTCTTTCTCTC
*
87651347 TTTTT-TTTCTTTCTTTC
1 TTTTTCTTTCTTTCTCTC
*
87651364 TTTTTGTTTC
1 TTTTTCTTTC
87651374 GTTTTGGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 12 0.50
18 4 0.17
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.77
Consensus pattern (18 bp):
TTTTTCTTTCTTTCTCTC
Found at i:87654562 original size:55 final size:55
Alignment explanation
Indices: 87654478--87654588 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
87654468 CTTCATAAAA
87654478 ACTCTTAATTTTGTCTATTTGCAAATCAATCCTATTTTCAAGATTAAATCTATTT
1 ACTCTTAATTTTGTCTATTTGCAAATCAATCCTATTTTCAAGATTAAATCTATTT
*
87654533 ACTCTTAATTTTGTCTCTTTGCAAATCAATCCTATTTTCAAGATTAAATCTATTT
1 ACTCTTAATTTTGTCTATTTGCAAATCAATCCTATTTTCAAGATTAAATCTATTT
87654588 A
1 A
87654589 AAACTCATTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.31, C:0.17, G:0.05, T:0.47
Consensus pattern (55 bp):
ACTCTTAATTTTGTCTATTTGCAAATCAATCCTATTTTCAAGATTAAATCTATTT
Found at i:87662729 original size:27 final size:25
Alignment explanation
Indices: 87662681--87662739 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 25
87662671 GCGAAGCTGC
*
87662681 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCA-A-A
* * *
87662708 CAGATATTGTGGCTAGGCCACCAAA
1 CAGATATTGTGACGAAGCCACCAAA
87662733 CAGATAT
1 CAGATAT
87662740 ATATATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.29
26 1 0.04
27 19 0.68
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (25 bp):
CAGATATTGTGACGAAGCCACCAAA
Found at i:87662743 original size:2 final size:2
Alignment explanation
Indices: 87662736--87662767 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
87662726 CACCAAACAG
87662736 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87662768 GTGTGTGGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87662852 original size:27 final size:26
Alignment explanation
Indices: 87662804--87662855 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
87662794 GCGAGGCTGC
*
87662804 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
87662830 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
87662856 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:87663127 original size:8 final size:8
Alignment explanation
Indices: 87663110--87663149 Score: 71
Period size: 8 Copynumber: 5.0 Consensus size: 8
87663100 TACCAAAGTG
*
87663110 GGCCCGTT
1 GGCCCATT
87663118 GGCCCATT
1 GGCCCATT
87663126 GGCCCATT
1 GGCCCATT
87663134 GGCCCATT
1 GGCCCATT
87663142 GGCCCATT
1 GGCCCATT
87663150 TTCGGCCCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.10, C:0.38, G:0.28, T:0.25
Consensus pattern (8 bp):
GGCCCATT
Found at i:87663553 original size:27 final size:27
Alignment explanation
Indices: 87663523--87663641 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
87663513 GGGGCAAAAT
* * *
87663523 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
87663550 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
87663577 AGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
87663604 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
87663631 GGTAATTCTAC
1 GGTAATTCTAC
87663642 AACTTATCCA
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:87663625 original size:54 final size:54
Alignment explanation
Indices: 87663524--87663641 Score: 173
Period size: 54 Copynumber: 2.2 Consensus size: 54
87663514 GGGCAAAATG
* * *
87663524 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * *
87663578 GTATTTCTACCCTATAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCG
1 GTAATTCTACCCTATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
87663632 GTAATTCTAC
1 GTAATTCTAC
87663642 AACTTATCCA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:87676074 original size:139 final size:139
Alignment explanation
Indices: 87675824--87676088 Score: 496
Period size: 139 Copynumber: 1.9 Consensus size: 139
87675814 AATGGAAAAG
* *
87675824 AAAGGGAGTAAGCATAGAGCTTAGTAAGCTTGCATGTAAAGAATAAGCAAAAAGAATATGCATTT
1 AAAGGGAGTAAGCATAGAGCTTAGTAAGCTTGCATGTAAAGAATAAGCAAAAAAAATATCCATTT
87675889 TCATACACATACATAAAATAATTTAATTCATCTTATTCTCAACAATCATTGAAGTCATATCCTAT
66 TCATACACATACATAAAATAATTTAATTCATCTTATTCTCAACAATCATTGAAGTCATATCCTAT
87675954 CTCATTCGA
131 CTCATTCGA
87675963 AAAGGGAGTAAGCATAGAGCTTAGTAAGCTTGCATGTAAAGAATAAG-AAAAAAATATATCCATT
1 AAAGGGAGTAAGCATAGAGCTTAGTAAGCTTGCATGTAAAGAATAAGCAAAAAAA-ATATCCATT
87676027 TTCATACACATACATAAAATAATTTAATTCATCTTATTCTCAACAATCATTGAAGTCATATC
65 TTCATACACATACATAAAATAATTTAATTCATCTTATTCTCAACAATCATTGAAGTCATATC
87676089 TCAACAATCA
Statistics
Matches: 123, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
138 6 0.05
139 117 0.95
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (139 bp):
AAAGGGAGTAAGCATAGAGCTTAGTAAGCTTGCATGTAAAGAATAAGCAAAAAAAATATCCATTT
TCATACACATACATAAAATAATTTAATTCATCTTATTCTCAACAATCATTGAAGTCATATCCTAT
CTCATTCGA
Found at i:87676117 original size:28 final size:23
Alignment explanation
Indices: 87676064--87676111 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
87676054 TTCATCTTAT
87676064 TCTCAACAATCATTGAAGTCATA
1 TCTCAACAATCATTGAAGTCATA
87676087 TCTCAACAATCATTGAAGTCATA
1 TCTCAACAATCATTGAAGTCATA
87676110 TC
1 TC
87676112 CTATCTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (23 bp):
TCTCAACAATCATTGAAGTCATA
Found at i:87676501 original size:94 final size:93
Alignment explanation
Indices: 87676388--87676636 Score: 347
Period size: 94 Copynumber: 2.7 Consensus size: 93
87676378 TAGGACCACT
87676388 TATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATTGCACATATCGAAGCCAATAG
1 TATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATT-CACATATCGAAGCCAATAG
* * *
87676453 GCTAGCTATGGCCTTACACGATGTTCTCA
65 CCCAACTATGGCCTTACACGATGTTCTCA
* * * *
87676482 TATCAATGCCAATGCCATGTCCCAAACATGATCTTACATGGGATCACACATATCGAAGCCGATAG
1 TATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGAT-TCACATATCGAAGCCAATAG
* *
87676547 CCCAATTATGGTCTTACACGATGTTCTCA
65 CCCAACTATGGCCTTACACGATGTTCTCA
* * * * *
87676576 TATCGATGCCAATGTCATGTCCTAGACATGGTCTTACATGGGA-TCACATAACGATGCCAAT
1 TATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATTCACATATCGAAGCCAAT
87676637 GCCATATCCC
Statistics
Matches: 136, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
92 14 0.10
94 122 0.90
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (93 bp):
TATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATTCACATATCGAAGCCAATAGC
CCAACTATGGCCTTACACGATGTTCTCA
Found at i:87676659 original size:48 final size:48
Alignment explanation
Indices: 87676574--87676668 Score: 109
Period size: 48 Copynumber: 2.0 Consensus size: 48
87676564 ACGATGTTCT
* * * * * *
87676574 CATATCGATGCCAATGTCATGTCCTAGACATGGTCTTACATGGGATCA
1 CATAACGATGCCAATGCCATATCCCAGACATAGTCTTACACGGGATCA
* * *
87676622 CATAACGATGCCAATGCCATATCCCAGATATATTCTTATACGGGATC
1 CATAACGATGCCAATGCCATATCCCAGACATAGTCTTACACGGGATC
87676669 TCATCAACCC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (48 bp):
CATAACGATGCCAATGCCATATCCCAGACATAGTCTTACACGGGATCA
Found at i:87678552 original size:21 final size:22
Alignment explanation
Indices: 87678517--87678558 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
87678507 GACTTACTTA
*
87678517 TATGTGATAAATTTACTTATGC
1 TATGTGATAAATTTACCTATGC
*
87678539 TATG-GATGAATTTACCTATG
1 TATGTGATAAATTTACCTATG
87678559 ACATCAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.43
Consensus pattern (22 bp):
TATGTGATAAATTTACCTATGC
Found at i:87678647 original size:20 final size:20
Alignment explanation
Indices: 87678618--87678656 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
87678608 TTATGCTAAT
*
87678618 TAAATGGAATGGAAAGTAAG
1 TAAATAGAATGGAAAGTAAG
*
87678638 TAAATAGAATGGTAAGTAA
1 TAAATAGAATGGAAAGTAA
87678657 ATGGAGTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (20 bp):
TAAATAGAATGGAAAGTAAG
Found at i:87679521 original size:15 final size:15
Alignment explanation
Indices: 87679503--87679540 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
87679493 CTCAACCGTG
87679503 TGTGACACACGGTCA
1 TGTGACACACGGTCA
*
87679518 TGTGACACAGGGTCA
1 TGTGACACACGGTCA
*
87679533 TGCGACAC
1 TGTGACAC
87679541 GGTAGTGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.18
Consensus pattern (15 bp):
TGTGACACACGGTCA
Found at i:87681415 original size:46 final size:44
Alignment explanation
Indices: 87681361--87681537 Score: 194
Period size: 46 Copynumber: 3.9 Consensus size: 44
87681351 ATATTTGGGC
87681361 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
87681405 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
87681454 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* * *
87681499 CACCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87681538 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:87681517 original size:93 final size:93
Alignment explanation
Indices: 87681358--87681529 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
87681348 AGGATATTTG
*** *
87681358 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
87681423 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
87681451 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
87681516 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
87681530 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:87684498 original size:21 final size:21
Alignment explanation
Indices: 87684472--87684512 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
87684462 AAGTGTGTTT
* *
87684472 ATTCATGACATAGGTAAATTC
1 ATTCATAACATAAGTAAATTC
87684493 ATTCATAACATAAGTAAATT
1 ATTCATAACATAAGTAAATT
87684513 TCTCACATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (21 bp):
ATTCATAACATAAGTAAATTC
Found at i:87688596 original size:11 final size:11
Alignment explanation
Indices: 87688580--87688608 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
87688570 ATATGTTGGT
87688580 GTTTTGGGTTA
1 GTTTTGGGTTA
87688591 GTTTTGGGTTA
1 GTTTTGGGTTA
87688602 GTTTTGG
1 GTTTTGG
87688609 AGTGTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.00, G:0.38, T:0.55
Consensus pattern (11 bp):
GTTTTGGGTTA
Found at i:87691083 original size:2 final size:2
Alignment explanation
Indices: 87691076--87691114 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
87691066 ATCATAATAC
87691076 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87691115 AAAAGAACGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:87693156 original size:39 final size:40
Alignment explanation
Indices: 87693067--87693233 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
87693057 TCGGATACAA
* * *
87693067 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACGACTCGCACAAATGCCTTCGGGTCTTAGC
*
87693107 CCGGATATAACGACTCGCACAAATGCCTTC-GGTATTAGC
1 CCGGATATAACGACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
87693146 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACGACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
87693186 CCGGATA-AA-GTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACG--ACTCGCACAAATGCCTTCGGGTCTTAGC
87693226 CCGGATAT
1 CCGGATAT
87693234 CATTCAATTG
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 37 0.34
40 73 0.66
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACGACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:87693206 original size:79 final size:80
Alignment explanation
Indices: 87693067--87693233 Score: 232
Period size: 79 Copynumber: 2.1 Consensus size: 80
87693057 TCGGATACAA
* *
87693067 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
87693132 CCTTC-GGTATTAGC
66 CCTTCGGGTATTAAC
** *
87693146 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
87693209 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
87693226 CCGGATAT
1 CCGGATAT
87693234 CATTCAATTG
Statistics
Matches: 78, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 2 0.03
79 60 0.77
80 15 0.19
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:87701110 original size:39 final size:40
Alignment explanation
Indices: 87701066--87701231 Score: 189
Period size: 39 Copynumber: 4.2 Consensus size: 40
87701056 TCGGATACAA
87701066 CCGGATATAACCACACGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
87701105 CCGGATATAACGACTCGCACAAATGCCTTC-GGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
87701144 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
87701184 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
87701224 CCGGATAT
1 CCGGATAT
87701232 CATTCAATTG
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
39 66 0.60
40 44 0.40
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:87703122 original size:9 final size:8
Alignment explanation
Indices: 87703101--87703130 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
87703091 ATTTGATTTT
87703101 TTTTTATA
1 TTTTTATA
87703109 TTTTTATA
1 TTTTTATA
87703117 TGTTTTATA
1 T-TTTTATA
87703126 TTTTT
1 TTTTT
87703131 GCACTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (8 bp):
TTTTTATA
Found at i:87707110 original size:20 final size:19
Alignment explanation
Indices: 87707087--87707153 Score: 70
Period size: 18 Copynumber: 3.6 Consensus size: 19
87707077 AAATTAATTC
87707087 ATATAATATTAAATAATTTA
1 ATAT-ATATTAAATAATTTA
*
87707107 ATATA-ATTATAATAA-ATA
1 ATATATATTA-AATAATTTA
87707125 ATATATATTAAATATATTTA
1 ATATATATTAAATA-ATTTA
87707145 A-ATA-ATTAA
1 ATATATATTAA
87707154 TAAATTATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
18 20 0.49
19 14 0.34
20 7 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
ATATATATTAAATAATTTA
Found at i:87707136 original size:14 final size:13
Alignment explanation
Indices: 87707092--87707152 Score: 53
Period size: 10 Copynumber: 5.1 Consensus size: 13
87707082 AATTCATATA
87707092 ATATTAAATAATT
1 ATATTAAATAATT
*
87707105 -TA--ATATAATT
1 ATATTAAATAATT
*
87707115 ATAATAAATAATAT
1 ATATTAAATAAT-T
87707129 ATATTAAAT-A-T
1 ATATTAAATAATT
87707140 AT-TTAAATAATT
1 ATATTAAATAATT
87707152 A
1 A
87707153 ATAAATTATT
Statistics
Matches: 39, Mismatches: 3, Indels: 13
0.71 0.05 0.24
Matches are distributed among these distances:
10 13 0.33
11 6 0.15
12 4 0.10
13 7 0.18
14 9 0.23
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATTAAATAATT
Found at i:87707232 original size:31 final size:31
Alignment explanation
Indices: 87707184--87707273 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 31
87707174 TGATAGATGA
*
87707184 AATATTTTAAAATTTTAAAATAAATTAAAAAT-
1 AATA-TTTAAAA-TTTAATATAAATTAAAAATG
* *
87707216 AATATTTAATAATTTAATAT-AA-TAATACTG
1 AATATTTAA-AATTTAATATAAATTAAAAATG
87707246 AATATTTAAACAATTTAATATAAATTAA
1 AATATTT-AA-AATTTAATATAAATTAA
87707274 TACAAAATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
29 5 0.10
30 9 0.18
31 24 0.49
32 8 0.16
33 3 0.06
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (31 bp):
AATATTTAAAATTTAATATAAATTAAAAATG
Found at i:87710448 original size:107 final size:107
Alignment explanation
Indices: 87710287--87710500 Score: 329
Period size: 107 Copynumber: 2.0 Consensus size: 107
87710277 AAAAGATTCG
* * *
87710287 TAATGTGTTCCATGTGTCGATGTTACAACGTTGTCATTCCGATCCCTCTTACGTGATTTGTACAA
1 TAATGTGTTCCATGTATCGATGTTACAACGTTATCATTCCGATCCCTCTCACGTGATTTGTACAA
* * *
87710352 ATGAAATAGAGTTGCAACCTGATTTTTCATATAGTGAAGAGC
66 ATGAAATAAAGTTACAACCTGATTTTTCATACAGTGAAGAGC
** * *
87710394 TAATGTGTTCCATGTATCGATGTTACGTCGTTATCTTTCTGATCCCTCTCACGTGATTTGTACAA
1 TAATGTGTTCCATGTATCGATGTTACAACGTTATCATTCCGATCCCTCTCACGTGATTTGTACAA
*
87710459 ATGAAATAAAGTTACAACCTGATTTTTCGTACAGTGAAGAGC
66 ATGAAATAAAGTTACAACCTGATTTTTCATACAGTGAAGAGC
87710501 CCATTTTAGT
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
107 96 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (107 bp):
TAATGTGTTCCATGTATCGATGTTACAACGTTATCATTCCGATCCCTCTCACGTGATTTGTACAA
ATGAAATAAAGTTACAACCTGATTTTTCATACAGTGAAGAGC
Found at i:87714000 original size:38 final size:38
Alignment explanation
Indices: 87713923--87714112 Score: 211
Period size: 38 Copynumber: 4.9 Consensus size: 38
87713913 AAATCCAGTC
* * * *
87713923 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* * *
87713963 ACCAGCACTAGGCCTGTGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
87714001 ACCAGCACGAAGCCTGCGGGATTTAACCTGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
87714039 ACCAGCACGAAGCCTGCGGGATTTAACTCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
87714077 TCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATA
87714113 CACATCAAAT
Statistics
Matches: 129, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 94 0.73
39 10 0.08
40 24 0.19
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:87717330 original size:55 final size:55
Alignment explanation
Indices: 87717222--87717330 Score: 164
Period size: 55 Copynumber: 2.0 Consensus size: 55
87717212 AGTTATTGTT
* *
87717222 GTACACGGGCAGGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTTAGTATC
1 GTACACGGGCAGGCCACACGGGCGTGTGCCATAGCCGTGTCTTAAAGTCAGTATC
* * * *
87717277 GTACACGGGCAGGTCACACGGGCGTGTGCCATAGCTGTGTGTTGAAGTCAGTAT
1 GTACACGGGCAGGCCACACGGGCGTGTGCCATAGCCGTGTCTTAAAGTCAGTAT
87717331 TGCACATGGG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.20, C:0.23, G:0.34, T:0.23
Consensus pattern (55 bp):
GTACACGGGCAGGCCACACGGGCGTGTGCCATAGCCGTGTCTTAAAGTCAGTATC
Found at i:87731219 original size:21 final size:21
Alignment explanation
Indices: 87731195--87731392 Score: 109
Period size: 21 Copynumber: 9.4 Consensus size: 21
87731185 CCGAAGGCTG
87731195 AACAAAAGCTCATAAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
* * * *
87731216 AACAGAAA-CCCATAAGGGTTG
1 AACA-AAAGCTCATAAGAGCTA
* *
87731237 AACAGAAGCTCATAAGAGCTG
1 AACAAAAGCTCATAAGAGCTA
* * * *
87731258 AACAGAAA-CTCTTAAAAGTTG
1 AACA-AAAGCTCATAAGAGCTA
* * *
87731279 AACAGAAGCTCGTAAAAGCTA
1 AACAAAAGCTCATAAGAGCTA
** * *
87731300 AATGGAAA-CACATAAGAGTTA
1 AA-CAAAAGCTCATAAGAGCTA
87731321 AACAAAAGCTCA-ATAGAGCTA
1 AACAAAAGCTCATA-AGAGCTA
** *
87731342 AACGAAAA-CTCATATTAGTTA
1 AAC-AAAAGCTCATAAGAGCTA
* *
87731363 AACAAAAGCTCGTGAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
87731384 AACGAAAAG
1 AAC-AAAAG
87731393 TAAACAAGAA
Statistics
Matches: 131, Mismatches: 35, Indels: 21
0.70 0.19 0.11
Matches are distributed among these distances:
20 12 0.09
21 102 0.78
22 17 0.13
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTA
Found at i:87731246 original size:42 final size:42
Alignment explanation
Indices: 87731193--87731390 Score: 186
Period size: 42 Copynumber: 4.7 Consensus size: 42
87731183 GCCCGAAGGC
* *
87731193 TGAACAAAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGT
1 TGAACAAAAGCTCATAAGAGCTAAACAGAAACACATAAGAGT
* * * * *
87731235 TGAACAGAAGCTCATAAGAGCTGAACAGAAACTCTTAAAAGT
1 TGAACAAAAGCTCATAAGAGCTAAACAGAAACACATAAGAGT
* * * **
87731277 TGAACAGAAGCTCGTAAAAGCTAAATGGAAACACATAAGAGT
1 TGAACAAAAGCTCATAAGAGCTAAACAGAAACACATAAGAGT
* * **
87731319 TAAACAAAAGCTCA-ATAGAGCTAAAC-GAAAACTCATATTAGT
1 TGAACAAAAGCTCATA-AGAGCTAAACAG-AAACACATAAGAGT
* * *
87731361 TAAACAAAAGCTCGTGAGAGCTAAAC-GAAA
1 TGAACAAAAGCTCATAAGAGCTAAACAGAAA
87731391 AGTAAACAAG
Statistics
Matches: 129, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
41 5 0.04
42 124 0.96
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (42 bp):
TGAACAAAAGCTCATAAGAGCTAAACAGAAACACATAAGAGT
Found at i:87731339 original size:84 final size:84
Alignment explanation
Indices: 87731193--87731390 Score: 222
Period size: 84 Copynumber: 2.4 Consensus size: 84
87731183 GCCCGAAGGC
* * * * * *
87731193 TGAACAAAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTGAACAGAAGCTCATAAGAGCTG
1 TGAACAAAAGCTCGTAAGAGCTAAACAGAAACACATAAGAGTTAAACAAAAGCTCATAAGAGCTA
*
87731258 AAC-AGAAACTCTTAAAAGT
66 AACGA-AAACTCATAAAAGT
* * **
87731277 TGAACAGAAGCTCGTAAAAGCTAAATGGAAACACATAAGAGTTAAACAAAAGCTCA-ATAGAGCT
1 TGAACAAAAGCTCGTAAGAGCTAAACAGAAACACATAAGAGTTAAACAAAAGCTCATA-AGAGCT
**
87731341 AAACGAAAACTCATATTAGT
65 AAACGAAAACTCATAAAAGT
* *
87731361 TAAACAAAAGCTCGTGAGAGCTAAAC-GAAA
1 TGAACAAAAGCTCGTAAGAGCTAAACAGAAA
87731391 AGTAAACAAG
Statistics
Matches: 94, Mismatches: 18, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
83 5 0.05
84 88 0.94
85 1 0.01
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (84 bp):
TGAACAAAAGCTCGTAAGAGCTAAACAGAAACACATAAGAGTTAAACAAAAGCTCATAAGAGCTA
AACGAAAACTCATAAAAGT
Found at i:87731889 original size:17 final size:18
Alignment explanation
Indices: 87731860--87731900 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
87731850 ATTAATCTTA
*
87731860 TCAATTAACTAATTTTTC
1 TCAATTAACTAATTTATC
87731878 TCAATTAA-TAATTTATC
1 TCAATTAACTAATTTATC
87731895 T-AATTA
1 TCAATTA
87731901 TTCTAGGCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 5 0.23
17 9 0.41
18 8 0.36
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.49
Consensus pattern (18 bp):
TCAATTAACTAATTTATC
Found at i:87734283 original size:93 final size:93
Alignment explanation
Indices: 87734166--87734477 Score: 529
Period size: 93 Copynumber: 3.4 Consensus size: 93
87734156 TTATTAACTG
*
87734166 CTAACTTGTAACATATTTGTATGAACTTGATTGTATATTTGTTGAACATGAATTAATAATATTGT
1 CTAACTTGTAACATATTTGCATGAACTTGATTGTATATTTGTTGAACATGAATTAATAATATTGT
*
87734231 ACATGAAACACATGGTTTAATTTGCTTA
66 ACATGAAACACATGATTTAATTTGCTTA
*
87734259 CTAACTTGTAACATATTTGCATGAACTTAATTGTATATTTGTTGAACATGAATTAATAATATTGT
1 CTAACTTGTAACATATTTGCATGAACTTGATTGTATATTTGTTGAACATGAATTAATAATATTGT
**
87734324 ACATGAAACACATGATTTAATTAACTT-
66 ACATGAAACACATGATTTAATTTGCTTA
*
87734351 TTAACTTGTAACATATTTGCATGAACTTGATTGTATATTTGTTGAACAAT-AATTAATAATATTG
1 CTAACTTGTAACATATTTGCATGAACTTGATTGTATATTTGTTGAAC-ATGAATTAATAATATTG
87734415 TACATGAAACACATGATTTAATTTGCTTA
65 TACATGAAACACATGATTTAATTTGCTTA
* *
87734444 CTAACTTGTAACGTATTTGTATGAACTTGATTGT
1 CTAACTTGTAACATATTTGCATGAACTTGATTGT
87734478 CACGTATATT
Statistics
Matches: 205, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
92 85 0.41
93 120 0.59
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (93 bp):
CTAACTTGTAACATATTTGCATGAACTTGATTGTATATTTGTTGAACATGAATTAATAATATTGT
ACATGAAACACATGATTTAATTTGCTTA
Found at i:87736158 original size:46 final size:47
Alignment explanation
Indices: 87736052--87736174 Score: 149
Period size: 46 Copynumber: 2.6 Consensus size: 47
87736042 ATGTTTCGAC
** * *
87736052 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
87736102 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
87736148 ATGGACTTACATGGCTCATTTCTGTCT
1 ATGGACTTACATGGCTCATTCCTGTCT
87736175 GTCCTGTCCT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
46 35 0.54
50 30 0.46
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:87739508 original size:9 final size:9
Alignment explanation
Indices: 87739494--87739529 Score: 72
Period size: 9 Copynumber: 4.0 Consensus size: 9
87739484 ATCTTAATTC
87739494 ACAATTCTA
1 ACAATTCTA
87739503 ACAATTCTA
1 ACAATTCTA
87739512 ACAATTCTA
1 ACAATTCTA
87739521 ACAATTCTA
1 ACAATTCTA
87739530 CTAAAATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (9 bp):
ACAATTCTA
Found at i:87742845 original size:2 final size:2
Alignment explanation
Indices: 87742840--87742881 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
87742830 TATATATATA
**
87742840 TG TG TG TG TG TG TG CA TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
87742882 AATGAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.02, C:0.02, G:0.48, T:0.48
Consensus pattern (2 bp):
TG
Found at i:87743094 original size:55 final size:55
Alignment explanation
Indices: 87743033--87743144 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
87743023 ACTCGGTAAG
*
87743033 TTTACTTTCCGGTTATTCGAGCTTACTAAGCATGTAAATGCTTACCCCTCTCTTT
1 TTTACTTTCCGGTTATTCGAGCTCACTAAGCATGTAAATGCTTACCCCTCTCTTT
87743088 TTTACTTTCCGGTTATTCGAGCTCACTAAGCATGTAAATGCTTACCCCTCTCTTT
1 TTTACTTTCCGGTTATTCGAGCTCACTAAGCATGTAAATGCTTACCCCTCTCTTT
87743143 TT
1 TT
87743145 CCCTATTTTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.20, C:0.26, G:0.12, T:0.42
Consensus pattern (55 bp):
TTTACTTTCCGGTTATTCGAGCTCACTAAGCATGTAAATGCTTACCCCTCTCTTT
Found at i:87751016 original size:9 final size:8
Alignment explanation
Indices: 87751000--87751025 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
87750990 TCCGAATTTG
87751000 ATAAAAAA
1 ATAAAAAA
87751008 ATAAAAAA
1 ATAAAAAA
87751016 ATAAAAAA
1 ATAAAAAA
87751024 AT
1 AT
87751026 GTTTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (8 bp):
ATAAAAAA
Found at i:87752118 original size:45 final size:45
Alignment explanation
Indices: 87752047--87752266 Score: 318
Period size: 45 Copynumber: 4.9 Consensus size: 45
87752037 TGTACAGTAA
**
87752047 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTAGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
* *
87752092 TATTCGGGCCTTTGAGTCTAGTAGGCTACAATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
* *
87752137 TATTCGGGCCTTTGAGCCTAGTAGGCTACAATGCTGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
* * *
87752182 TATTCGGGCCTTTAAGCCCAGCAGGCTACAATACCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
* *
87752227 TATTCGGG-CTTTCAAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTACAATGCCGGTGAA
87752267 TAAACTCAGG
Statistics
Matches: 160, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
44 15 0.09
45 145 0.91
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
Found at i:87759986 original size:45 final size:45
Alignment explanation
Indices: 87759922--87760051 Score: 158
Period size: 45 Copynumber: 2.9 Consensus size: 45
87759912 TGTACAGTAA
*
87759922 TATTCGGGCCTATGAGCCTAGCAGGCTACAATACCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATACCGGTGAAATAC
* * *
87759967 TATTCGGGCCTTTGAGCCTAGTAGGCTACAATGCTGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATACCGGTGAAATAC
* * *
87760012 TATTCTGG-CTTTCAAGCCTAGCA-GATGA-AATACCGGTGAA
1 TATTCGGGCCTTT-GAGCCTAGCAGGCT-ACAATACCGGTGAA
87760052 TGAACTCAGG
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
44 16 0.22
45 57 0.78
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATACCGGTGAAATAC
Found at i:87771043 original size:13 final size:13
Alignment explanation
Indices: 87771025--87771050 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87771015 TTGGATCCGT
87771025 ACCAAAACAATCA
1 ACCAAAACAATCA
87771038 ACCAAAACAATCA
1 ACCAAAACAATCA
87771051 TGAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:87772169 original size:44 final size:44
Alignment explanation
Indices: 87772082--87772212 Score: 153
Period size: 44 Copynumber: 3.0 Consensus size: 44
87772072 AACTCGTACA
* * * *
87772082 ATGCCAACGTCCTAGAC-GTGGTTTTACATGT-AATCACATATCG
1 ATGCCAACATCCCAGACAG-GGTCTTACACGTAAATCACATATCG
* *
87772125 ATGCC-ACTATCCCAGATAGGGTCTTACACGTAAATCACAAATCG
1 ATGCCAAC-ATCCCAGACAGGGTCTTACACGTAAATCACATATCG
*
87772169 ATGCCAACATCCCAGACATGGTCTTACACG-AAATCACATATCG
1 ATGCCAACATCCCAGACAGGGTCTTACACGTAAATCACATATCG
87772212 A
1 A
87772213 AACCCTATGT
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
42 2 0.03
43 34 0.45
44 37 0.49
45 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (44 bp):
ATGCCAACATCCCAGACAGGGTCTTACACGTAAATCACATATCG
Found at i:87775279 original size:10 final size:10
Alignment explanation
Indices: 87775264--87775290 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
87775254 ATTAGATAAA
87775264 ATGTTATTAT
1 ATGTTATTAT
87775274 ATGTTATTAT
1 ATGTTATTAT
87775284 ATGTTAT
1 ATGTTAT
87775291 AATTTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
ATGTTATTAT
Found at i:87777757 original size:2 final size:2
Alignment explanation
Indices: 87777750--87777778 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
87777740 TTTATGCATG
87777750 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
87777779 GTGTGTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:87779706 original size:80 final size:80
Alignment explanation
Indices: 87779573--87779758 Score: 232
Period size: 80 Copynumber: 2.3 Consensus size: 80
87779563 ATTGAATGAT
* * * * *
87779573 ATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGC-AT
* * *
87779638 T-GTGCTAGTGGCTAC
65 TCATGCAAGTGGCTAA
*
87779653 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
* *
87779718 CATGCAAGTTGTTAA
66 CATGCAAGTGGCTAA
*
87779733 ATCCGGGCTAAGACCCGAAGG-CATTT
1 ATCCGGGCTAAGTCCCG-AGGACATTT
87779759 GTGCAAATCG
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 3 0.03
80 86 0.93
81 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
CATGCAAGTGGCTAA
Found at i:87779756 original size:40 final size:39
Alignment explanation
Indices: 87779573--87779757 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
87779563 ATTGAATGAT
* * * * * * *
87779573 ATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATT-ATGCTAGTAGTTAA
* * * * *
87779613 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTATGCTAGTAGTTAA
* * *
87779653 ATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGG-CA-TTATGCTAGTAGTTAA
* *
87779693 ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-ATGCTAGTAGTTAA
87779733 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
87779758 TGTGCAAATC
Statistics
Matches: 117, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 6 0.05
40 106 0.91
41 5 0.04
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTATGCTAGTAGTTAA
Found at i:87779775 original size:80 final size:80
Alignment explanation
Indices: 87779611--87779794 Score: 201
Period size: 80 Copynumber: 2.3 Consensus size: 80
87779601 GCTGGAAATT
* * * *
87779611 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACA
1 ATATCCGGGTTAAGACCCGAAGGCAATTATGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
* * *
87779676 TTTATGCTAGTAATT
66 TTTATGCAAATAATG
* * *
87779691 ATATCCGGGCTAAGACCCGAAGGC-ATTCATGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGG-
1 ATATCCGGGTTAAGACCCGAAGGCAATT-ATGCAAGTGGCTAAATCCGGGCTAAGACCCG-AGGA
* **
87779754 CATTTGTGCAAATCGTG
64 CATTTATGCAAATAATG
* *
87779771 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGTTAAGACCCGAAGGC
87779795 CTTGGTGCAG
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 80 0.93
81 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTATGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
TTTATGCAAATAATG
Found at i:87779777 original size:40 final size:38
Alignment explanation
Indices: 87779610--87779803 Score: 147
Period size: 40 Copynumber: 4.9 Consensus size: 38
87779600 TGCTGGAAAT
* * *
87779610 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * * * *
87779649 CTACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAAT
1 -TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGT--G
**
87779690 TATATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTTG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TG
* *
87779729 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * * * *
87779769 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCA
1 T-ATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
87779804 GGTTACCATA
Statistics
Matches: 125, Mismatches: 22, Indels: 14
0.78 0.14 0.09
Matches are distributed among these distances:
39 5 0.04
40 116 0.93
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG
Found at i:87786689 original size:10 final size:10
Alignment explanation
Indices: 87786674--87786700 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
87786664 ATTAGATAAA
87786674 ATGTTATTAT
1 ATGTTATTAT
87786684 ATGTTATTAT
1 ATGTTATTAT
87786694 ATGTTAT
1 ATGTTAT
87786701 AATTTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
ATGTTATTAT
Found at i:87791837 original size:15 final size:16
Alignment explanation
Indices: 87791808--87791842 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
87791798 GTTTTCTTTT
87791808 TCATTTAATTAAATTG
1 TCATTTAATTAAATTG
*
87791824 TCATTTAA-TAAATTT
1 TCATTTAATTAAATTG
87791839 TCAT
1 TCAT
87791843 CTTTCCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (16 bp):
TCATTTAATTAAATTG
Found at i:87793364 original size:25 final size:25
Alignment explanation
Indices: 87793330--87793379 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
87793320 CTTTTAAATA
87793330 ATATTCAAACTCTCTTTTCTTCAAT
1 ATATTCAAACTCTCTTTTCTTCAAT
87793355 ATATTCAAACTCTCTTTTCTTCAAT
1 ATATTCAAACTCTCTTTTCTTCAAT
87793380 CTTTTATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (25 bp):
ATATTCAAACTCTCTTTTCTTCAAT
Done.