Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 282 of 433
Found at i:87800497 original size:27 final size:27
Alignment explanation
Indices: 87800437--87800489 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
87800427 TTAACATCCT
* *
87800437 GACCATTTGGATTATTATTGAGACCAA
1 GACCATTTGGATTATCATTAAGACCAA
*
87800464 GACCATTTGGATTATCGTTAAGACCA
1 GACCATTTGGATTATCATTAAGACCA
87800490 GGATCATTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (27 bp):
GACCATTTGGATTATCATTAAGACCAA
Found at i:87805394 original size:40 final size:40
Alignment explanation
Indices: 87805339--87805456 Score: 182
Period size: 40 Copynumber: 3.0 Consensus size: 40
87805329 GAAAAAAAAA
* *
87805339 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCAGGTTAAGTCCCGAAGGCATTCGTGCAGGTTAT
*
87805379 TATAACCAGGTTAAGTCCCGAAGGCATTCGTGTAGGTTAT
1 TATAACCAGGTTAAGTCCCGAAGGCATTCGTGCAGGTTAT
* * *
87805419 TATAACCTGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCAGGTTAAGTCCCGAAGGCATTCGTGCAGGTT
87805457 GTTACATCCG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (40 bp):
TATAACCAGGTTAAGTCCCGAAGGCATTCGTGCAGGTTAT
Found at i:87807755 original size:30 final size:31
Alignment explanation
Indices: 87807721--87807780 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
87807711 CAATCTAGTA
*
87807721 ACTTAAA-TAAAACTTTTAATTAATTTAATG
1 ACTTAAATTAAAACTTTTAAATAATTTAATG
*
87807751 ACTTAAATTAAAATTTTTAAATAATTTAAT
1 ACTTAAATTAAAACTTTTAAATAATTTAAT
87807781 AATCATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (31 bp):
ACTTAAATTAAAACTTTTAAATAATTTAATG
Found at i:87811024 original size:27 final size:27
Alignment explanation
Indices: 87810944--87811032 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
87810934 CTGCCAGGAT
* * *
87810944 AGTAAACACTGGGTAGTCTGTTGGGAC
1 AGTAAACACGGGGTAGTCTATCGGGAC
* * * ** * * *
87810971 AATGAACATGGAATAGTCCACCAGGAC
1 AGTAAACACGGGGTAGTCTATCGGGAC
87810998 AGTAAACACGGGGTAGTCTATCGGGAC
1 AGTAAACACGGGGTAGTCTATCGGGAC
*
87811025 ATTAAACA
1 AGTAAACA
87811033 TGAGACGAAC
Statistics
Matches: 42, Mismatches: 20, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (27 bp):
AGTAAACACGGGGTAGTCTATCGGGAC
Found at i:87822448 original size:12 final size:12
Alignment explanation
Indices: 87822431--87822456 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
87822421 GTAATGGTTG
87822431 ACTACCTTTGAA
1 ACTACCTTTGAA
87822443 ACTACCTTTGAA
1 ACTACCTTTGAA
87822455 AC
1 AC
87822457 CTGTGCAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.31
Consensus pattern (12 bp):
ACTACCTTTGAA
Found at i:87824922 original size:103 final size:103
Alignment explanation
Indices: 87824743--87824948 Score: 412
Period size: 103 Copynumber: 2.0 Consensus size: 103
87824733 CTTTAGTAAG
87824743 AAGCCTGATGTCTATGCCACTAATGGAAAGGAGGCACTCGCTGTTAGGCAATATTTTGAGGGAGT
1 AAGCCTGATGTCTATGCCACTAATGGAAAGGAGGCACTCGCTGTTAGGCAATATTTTGAGGGAGT
87824808 GAATAAGCGTTTCTCTTTTAGCACTGCACCTTGGACAA
66 GAATAAGCGTTTCTCTTTTAGCACTGCACCTTGGACAA
87824846 AAGCCTGATGTCTATGCCACTAATGGAAAGGAGGCACTCGCTGTTAGGCAATATTTTGAGGGAGT
1 AAGCCTGATGTCTATGCCACTAATGGAAAGGAGGCACTCGCTGTTAGGCAATATTTTGAGGGAGT
87824911 GAATAAGCGTTTCTCTTTTAGCACTGCACCTTGGACAA
66 GAATAAGCGTTTCTCTTTTAGCACTGCACCTTGGACAA
87824949 TCCTGTTGAA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 103 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (103 bp):
AAGCCTGATGTCTATGCCACTAATGGAAAGGAGGCACTCGCTGTTAGGCAATATTTTGAGGGAGT
GAATAAGCGTTTCTCTTTTAGCACTGCACCTTGGACAA
Found at i:87827883 original size:24 final size:24
Alignment explanation
Indices: 87827852--87827923 Score: 126
Period size: 24 Copynumber: 3.0 Consensus size: 24
87827842 CAGACCCCTT
87827852 GAGCTTGGTTTGAACGGTTCACTC
1 GAGCTTGGTTTGAACGGTTCACTC
87827876 GAGCTTGGTTTGAACGGTTCACTC
1 GAGCTTGGTTTGAACGGTTCACTC
* *
87827900 GATCTTGGTTTAAACGGTTCACTC
1 GAGCTTGGTTTGAACGGTTCACTC
87827924 ACAAAGAGGT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (24 bp):
GAGCTTGGTTTGAACGGTTCACTC
Found at i:87834229 original size:21 final size:21
Alignment explanation
Indices: 87834200--87834250 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
87834190 ACTAAGTTGA
*
87834200 AAGAGTTGAAAGCACAATTGT
1 AAGAGTTGAAAGCACAATTGC
* *
87834221 AATAGTTGAAAGCGCAATTGC
1 AAGAGTTGAAAGCACAATTGC
87834242 AAGAGTTGA
1 AAGAGTTGA
87834251 TAGATAGGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.41, C:0.10, G:0.25, T:0.24
Consensus pattern (21 bp):
AAGAGTTGAAAGCACAATTGC
Found at i:87841816 original size:42 final size:42
Alignment explanation
Indices: 87841764--87841879 Score: 117
Period size: 42 Copynumber: 2.8 Consensus size: 42
87841754 ACCTTTCAAT
* *
87841764 GCCATATCCCCGATATGGTCTTACATGAAAT-ATCATATCGAC
1 GCCATATCCCCGATATGGTCTTACACGAAATCA-CATACCGAC
* * * * *
87841806 GCCATGTCCCCGACATGGTTTTATACGAAATCACATACCGAG
1 GCCATATCCCCGATATGGTCTTACACGAAATCACATACCGAC
* * * *
87841848 GTCATATCCCAGATATGGTCTTATACGGAATC
1 GCCATATCCCCGATATGGTCTTACACGAAATC
87841880 TTAATAACCT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 59 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
GCCATATCCCCGATATGGTCTTACACGAAATCACATACCGAC
Found at i:87843634 original size:13 final size:13
Alignment explanation
Indices: 87843616--87843652 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
87843606 CATGTATGAC
87843616 ACATGGCCATGCG
1 ACATGGCCATGCG
87843629 ACATGGCCATGCG
1 ACATGGCCATGCG
87843642 ACATGGCCATG
1 ACATGGCCATG
87843653 TGTCCCCTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (13 bp):
ACATGGCCATGCG
Found at i:87861833 original size:34 final size:33
Alignment explanation
Indices: 87861795--87861901 Score: 160
Period size: 34 Copynumber: 3.2 Consensus size: 33
87861785 GGCAGTCCAA
*
87861795 TATCAGTGTGGGCCTTAGCCCATAGCAGTAACAG
1 TATCAATGTGGGCCTTAGCCCATA-CAGTAACAG
87861829 TATCAATGTGGGCCTTAGCCCATAACAGTAACAG
1 TATCAATGTGGGCCTTAGCCCAT-ACAGTAACAG
* *
87861863 TATCAATGTGGGCCTTATCCCATTACAGTAACAT
1 TATCAATGTGGGCCTTAGCCCA-TACAGTAACAG
87861897 TATCA
1 TATCA
87861902 GTAATGCAAC
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
34 66 0.97
35 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (33 bp):
TATCAATGTGGGCCTTAGCCCATACAGTAACAG
Found at i:87869897 original size:29 final size:28
Alignment explanation
Indices: 87869865--87869967 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
87869855 GTGACGAGAT
* *
87869865 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
87869894 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
87869923 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
87869952 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
87869968 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:87872490 original size:18 final size:19
Alignment explanation
Indices: 87872467--87872505 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
87872457 TTAGTATTTA
*
87872467 ATTTGAA-TAATTGTTTCT
1 ATTTGAAGTAAATGTTTCT
87872485 ATTTGAAGTTAAATGTTTCT
1 ATTTGAAG-TAAATGTTTCT
87872505 A
1 A
87872506 ATTGTATTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (19 bp):
ATTTGAAGTAAATGTTTCT
Found at i:87874820 original size:18 final size:18
Alignment explanation
Indices: 87874797--87874833 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
87874787 AGCACCTTCC
* *
87874797 TAGAGGCCAGTTTGCAAT
1 TAGAGGCCAATCTGCAAT
87874815 TAGAGGCCAATCTGCAAT
1 TAGAGGCCAATCTGCAAT
87874833 T
1 T
87874834 TCAATCTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (18 bp):
TAGAGGCCAATCTGCAAT
Found at i:87876955 original size:29 final size:30
Alignment explanation
Indices: 87876899--87876954 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
87876889 ATTATAGTAA
*
87876899 ATACTTATTTTCGTAATTAATCTATTTTCC
1 ATACTTATTTTAGTAATTAATCTATTTTCC
87876929 ATAC-TATTTTAGTAATTAAT-TATTTT
1 ATACTTATTTTAGTAATTAATCTATTTT
87876955 TTATATTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 6 0.24
29 15 0.60
30 4 0.16
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.55
Consensus pattern (30 bp):
ATACTTATTTTAGTAATTAATCTATTTTCC
Found at i:87876971 original size:28 final size:29
Alignment explanation
Indices: 87876903--87876965 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
87876893 TAGTAAATAC
*
87876903 TTATTTTCGTAATTAATCTATTTTCCATA
1 TTATTTTAGTAATTAATCTATTTTCCATA
* **
87876932 CTATTTTAGTAATTAAT-TATTTTTTATA
1 TTATTTTAGTAATTAATCTATTTTCCATA
87876960 TTATTT
1 TTATTT
87876966 ATGTAAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 14 0.48
29 15 0.52
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (29 bp):
TTATTTTAGTAATTAATCTATTTTCCATA
Found at i:87883251 original size:14 final size:15
Alignment explanation
Indices: 87883232--87883266 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
87883222 TGATTTTAAT
87883232 TTTTGGTA-AAAGGA
1 TTTTGGTACAAAGGA
87883246 TTTTGGTAGCAAAGGA
1 TTTTGGTA-CAAAGGA
87883262 TTTTG
1 TTTTG
87883267 TGGTGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.42
16 11 0.58
ACGTcount: A:0.29, C:0.03, G:0.29, T:0.40
Consensus pattern (15 bp):
TTTTGGTACAAAGGA
Found at i:87886200 original size:18 final size:18
Alignment explanation
Indices: 87886171--87886279 Score: 96
Period size: 18 Copynumber: 6.1 Consensus size: 18
87886161 AGTCACTCTT
*
87886171 TAACAGTCAATTATTCAG
1 TAACAGTAAATTATTCAG
87886189 TAAC-GATAAATTATTCAG
1 TAACAG-TAAATTATTCAG
*
87886207 TAACAGTCAATTATTCAG
1 TAACAGTAAATTATTCAG
* * * * *
87886225 TAGCATTCAGTTATCCAG
1 TAACAGTAAATTATTCAG
* *
87886243 TAACAGTCAGTTATTCAG
1 TAACAGTAAATTATTCAG
* *
87886261 TAGCAGT-AGTTATTCAG
1 TAACAGTAAATTATTCAG
87886278 TA
1 TA
87886280 CCTTTATTTA
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
17 13 0.16
18 65 0.82
19 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (18 bp):
TAACAGTAAATTATTCAG
Found at i:87886263 original size:36 final size:34
Alignment explanation
Indices: 87886171--87886279 Score: 137
Period size: 36 Copynumber: 3.1 Consensus size: 34
87886161 AGTCACTCTT
* *
87886171 TAACAGTCAATTATTCAGTAACGATAAATTATTCAG
1 TAACAGTCAATTATTCAGTAGC-AT-AGTTATTCAG
*
87886207 TAACAGTCAATTATTCAGTAGCATTCAGTTATCCAG
1 TAACAGTCAATTATTCAGTAGCA-T-AGTTATTCAG
*
87886243 TAACAGTCAGTTATTCAGTAGCAGTAGTTATTCAG
1 TAACAGTCAATTATTCAGTAGCA-TAGTTATTCAG
87886278 TA
1 TA
87886280 CCTTTATTTA
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
35 12 0.18
36 53 0.82
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (34 bp):
TAACAGTCAATTATTCAGTAGCATAGTTATTCAG
Found at i:87887643 original size:18 final size:18
Alignment explanation
Indices: 87887605--87887643 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
87887595 GCCTATTCTG
*
87887605 TTTCTTTTCTTTGTTTCA
1 TTTCTTTTCTTTCTTTCA
87887623 TTTCTTTTTCTTTCTTT-A
1 TTTC-TTTTCTTTCTTTCA
87887641 TTT
1 TTT
87887644 AATATATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTCTTTTCTTTCTTTCA
Found at i:87899077 original size:21 final size:23
Alignment explanation
Indices: 87899044--87899091 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
87899034 TTTTGAAAAC
*
87899044 TTTTAATTATTATTTTTAATT-T
1 TTTTAATTATTATCTTTAATTAT
* *
87899066 TTTTACTT-TTATCTTTATTTAT
1 TTTTAATTATTATCTTTAATTAT
87899088 TTTT
1 TTTT
87899092 TTAAATTACT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTAATTATTATCTTTAATTAT
Found at i:87905385 original size:37 final size:37
Alignment explanation
Indices: 87905320--87905421 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
87905310 TCGAATAGTC
*
87905320 CCACACGTAGTTATC-GGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
87905356 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
87905393 CCACATGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
87905422 ATATATTTCC
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
36 14 0.23
37 48 0.77
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:87905620 original size:48 final size:48
Alignment explanation
Indices: 87905562--87905754 Score: 307
Period size: 48 Copynumber: 4.0 Consensus size: 48
87905552 ATATACACAC
* *
87905562 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
* *
87905610 ATCTCATACATATTTCTCACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
* *
87905658 ATCTCAT-TATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
* *
87905705 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
87905753 AT
1 AT
87905755 ATTTATCTTG
Statistics
Matches: 134, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 43 0.32
48 91 0.68
ACGTcount: A:0.31, C:0.28, G:0.05, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
Found at i:87905683 original size:95 final size:95
Alignment explanation
Indices: 87905571--87905754 Score: 314
Period size: 95 Copynumber: 1.9 Consensus size: 95
87905561 CATCTCCTAC
* *
87905571 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCTCACTAGCCA
1 ATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
* *
87905636 TTCGGCTTTACCACATATACATATCTCATT
66 TTCGACTTTACCACACATACATATCTCATT
*
87905666 ATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
*
87905731 TTCGACTTTACCACACATATATAT
66 TTCGACTTTACCACACATACATAT
87905755 ATTTATCTTG
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 83 1.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (95 bp):
ATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
TTCGACTTTACCACACATACATATCTCATT
Found at i:87908436 original size:40 final size:40
Alignment explanation
Indices: 87908391--87908557 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
87908381 CGGAATATAA
87908391 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
87908431 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
87908471 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
87908511 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
87908550 CCGGATAT
1 CCGGATAT
87908558 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:87912584 original size:37 final size:37
Alignment explanation
Indices: 87912531--87912633 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
87912521 CGAATAGTCC
*
87912531 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
87912568 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
87912605 CCACATGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
87912634 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:87912832 original size:48 final size:48
Alignment explanation
Indices: 87912774--87912967 Score: 316
Period size: 48 Copynumber: 4.0 Consensus size: 48
87912764 ATATACACAC
* *
87912774 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
* *
87912822 ATCTCATACATATTTCTCACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
* *
87912870 ATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
* *
87912918 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
87912966 AT
1 AT
87912968 ATTTATCTTG
Statistics
Matches: 136, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 136 1.00
ACGTcount: A:0.31, C:0.28, G:0.05, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
Found at i:87919799 original size:37 final size:37
Alignment explanation
Indices: 87919746--87919848 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
87919736 CGAATAGTCC
*
87919746 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
87919783 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
87919820 CCACATGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
87919849 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:87920047 original size:48 final size:48
Alignment explanation
Indices: 87919989--87920182 Score: 316
Period size: 48 Copynumber: 4.0 Consensus size: 48
87919979 ATATACACAC
* *
87919989 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
* *
87920037 ATCTCATACATATTTCTCACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
* *
87920085 ATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
* *
87920133 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
87920181 AT
1 AT
87920183 ATTTATCTTG
Statistics
Matches: 136, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 136 1.00
ACGTcount: A:0.31, C:0.28, G:0.05, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
Found at i:87922864 original size:40 final size:40
Alignment explanation
Indices: 87922819--87922985 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
87922809 CGGAATATAA
87922819 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
87922859 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
87922899 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
87922939 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
87922978 CCGGATAT
1 CCGGATAT
87922986 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:87927776 original size:89 final size:89
Alignment explanation
Indices: 87927625--87927804 Score: 308
Period size: 89 Copynumber: 2.0 Consensus size: 89
87927615 ATCATACTGC
*
87927625 ATGTAATGTCCATGCTACACATCCATACTTGATCTATGTCATTTGGCTGTGTTAATATACGTGAT
1 ATGTAATGTCCATGCTACACATCCATACTTGATCTATGTCACTTGGCTGTGTTAATATACGTGAT
*
87927690 CAAGGG-TGGATTTAGTTACGATAT
66 C-AGGGATAGATTTAGTTACGATAT
* *
87927714 ATGTAATGTCCATGCTACATATCCATACTTGATCTATGTCACTTGGTTGTGTTAATATACGTGAT
1 ATGTAATGTCCATGCTACACATCCATACTTGATCTATGTCACTTGGCTGTGTTAATATACGTGAT
87927779 CAGGGATAGATTTAGTTACGATAT
66 CAGGGATAGATTTAGTTACGATAT
87927803 AT
1 AT
87927805 ATAACGAAAG
Statistics
Matches: 86, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
88 4 0.05
89 82 0.95
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (89 bp):
ATGTAATGTCCATGCTACACATCCATACTTGATCTATGTCACTTGGCTGTGTTAATATACGTGAT
CAGGGATAGATTTAGTTACGATAT
Found at i:87935421 original size:27 final size:27
Alignment explanation
Indices: 87935399--87935479 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
87935389 ATAGTTCATA
*
87935399 CAGAGTATGCCATAAAGGCAGTTCTTT
1 CAGAGTATGCCACAAAGGCAGTTCTTT
* *
87935426 CAGAGTACGCCACAAAAGCAGTTCTTT
1 CAGAGTATGCCACAAAGGCAGTTCTTT
* *
87935453 CAGAGTATGCCACAAAGGTAGCTCTTT
1 CAGAGTATGCCACAAAGGCAGTTCTTT
87935480 AACTGTCGTG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (27 bp):
CAGAGTATGCCACAAAGGCAGTTCTTT
Found at i:87937015 original size:48 final size:48
Alignment explanation
Indices: 87936677--87937054 Score: 279
Period size: 48 Copynumber: 7.9 Consensus size: 48
87936667 TTTGGGTGAT
* * * *** ** *
87936677 ATGAGAGCCAGTGTAAGACTATGTCTGGAACATGGCATCGGTATTAAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAC
* * * * * * * * * *
87936725 ATGTGTGCTAGTGTTAGACCATGTTTGGGACATGGCGTTGGCCACAAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAC
* *** * *
87936773 ATGAGACCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAC
** * * * * * * *
87936821 ATCTGTGATAGTGTAAGACTATGTCTGGGACATGGCGTCGGCCACGAA
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAC
* * * * * * *
87936869 AGGAGAGCCAGTGTAAGACCATGTCTGGGACATGGTATTGACATTGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAC
* * * * * *
87936917 ATGCGTGCTAGTTTAAGACCATGTTTGGGACATGGCATCGACCACAAC
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAC
* *
87936965 ATGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCAACCTCGAC
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAC
* * * *
87937013 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGAC
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
87937055 AATTCACCCT
Statistics
Matches: 251, Mismatches: 79, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
48 251 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAC
Found at i:87937049 original size:96 final size:95
Alignment explanation
Indices: 87936677--87937054 Score: 432
Period size: 96 Copynumber: 3.9 Consensus size: 95
87936667 TTTGGGTGAT
* * * ** * *
87936677 ATGAGAGCCAGTGTAAGACTATGTCTGGAACATGGCATCGGTATTAATATGTGTGCTAGTGTTAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCTAGTGTAAG
* * *
87936742 ACCATGTTTGGGACATGGCGTTGGCCACAA
66 ACCATGTTTGGGACATGGCATCGACCACAA
* ** * *
87936772 TATGAGACCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGATATCTGTGATAGTGTAA
1 -ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCTAGTGTAA
* * * *
87936837 GACTATGTCTGGGACATGGCGTCGGCCACGAA
65 GACCATGTTTGGGACATGGCATCGACCAC-AA
* * * * * *
87936869 AGGAGAGCCAGTGTAAGACCATGTCTGGGACATGGTATTGACATTGATATGCGTGCTAGTTTAAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCTAGTGTAAG
87936934 ACCATGTTTGGGACATGGCATCGACCACAA
66 ACCATGTTTGGGACATGGCATCGACCACAA
* * * * * * *
87936964 CATGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCAACCTCGACATGTGAGCCAGTGTAA
1 -ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCTAGTGTAA
*
87937029 GACCATGTTTGGAACATGGCATCGAC
65 GACCATGTTTGGGACATGGCATCGAC
87937055 AATTCACCCT
Statistics
Matches: 240, Mismatches: 40, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
95 2 0.01
96 236 0.98
97 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (95 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCTAGTGTAAG
ACCATGTTTGGGACATGGCATCGACCACAA
Found at i:87943761 original size:28 final size:29
Alignment explanation
Indices: 87943694--87943794 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
87943684 ATAGTGAATC
*
87943694 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
87943723 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
87943751 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
87943781 CGCACACTTAGTGC
1 CGCACACTTAGTGC
87943795 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:87945942 original size:30 final size:29
Alignment explanation
Indices: 87945848--87945949 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
87945838 TATAGTGAAT
* * * *
87945848 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTGTAAATTTTAAAC
* *
87945877 TCGCACACTTAGTGCTGTATAA--TCAAAC
1 CCGCACACTTAGTGCTGTA-AATTTTAAAC
*
87945905 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTGTA-AATTTTAAAC
87945935 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
87945950 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 24 0.39
29 17 0.28
30 20 0.33
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTGTAAATTTTAAAC
Found at i:87953749 original size:29 final size:29
Alignment explanation
Indices: 87953717--87953817 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
87953707 ATAGTGAATC
*
87953717 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
*
87953746 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * * *
87953774 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAACT
87953804 CGCACACTTAGTGC
1 CGCACACTTAGTGC
87953818 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 21 0.34
30 17 0.28
31 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Found at i:87953810 original size:30 final size:29
Alignment explanation
Indices: 87953716--87953817 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
87953706 TATAGTGAAT
* * *
87953716 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
87953745 TCGCACACTTAGTGCTATATAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
87953773 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
87953803 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
87953818 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:87959285 original size:17 final size:18
Alignment explanation
Indices: 87959243--87959291 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
87959233 AGTTGAAAAG
87959243 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
87959262 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
87959279 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
87959292 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:87960178 original size:40 final size:40
Alignment explanation
Indices: 87960112--87960278 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
87960102 AAATTGAATG
* * *
87960112 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
87960151 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
87960191 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
87960231 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
87960271 ATATCCGG
1 ATATCCGG
87960279 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:87964426 original size:80 final size:81
Alignment explanation
Indices: 87964298--87964463 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 81
87964288 CGGGACATAG
* * * *
87964298 CCCGGTTATAGTAATTCGCACAATTGCCTTCGGGAATTAGCCCAGATTTAGTAAC-TCGCACAAA
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAGCCCAGATTTAATAACTTAGCACAAA
*
87964362 TGCCTTCGGAACTTAA
66 AGCCTTCGGAACTTAA
* * * * *
87964378 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATT-GACCCGGATTTAATCACTTAGCATAA
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAG-CCCAGATTTAATAACTTAGCACAA
* *
87964442 AAGCCTTCGGGACTTAG
65 AAGCCTTCGGAACTTAA
87964459 CCCGG
1 CCCGG
87964464 ACATCATTCG
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.01
80 46 0.64
81 25 0.35
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (81 bp):
CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAGCCCAGATTTAATAACTTAGCACAAA
AGCCTTCGGAACTTAA
Found at i:87964463 original size:41 final size:40
Alignment explanation
Indices: 87964285--87964464 Score: 179
Period size: 40 Copynumber: 4.5 Consensus size: 40
87964275 GCTCGATTGT
* *
87964285 CTTCGGGACA-TAGCCCGG-TTATAGTAATTCGCACAATTGC
1 CTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCACAAATGC
*
87964325 CTTCGGGAATTAGCCCAGATTTAGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
87964365 CTTC-GGAACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAA-TTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
87964405 CTTCGGGAATT-GACCCGGATTTAATCACTTAGCATAAAAGC
1 CTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
87964446 CTTCGGGACTTAGCCCGGA
1 CTTCGGGAATTAGCCCGGA
87964465 CATCATTCGA
Statistics
Matches: 117, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
39 5 0.04
40 80 0.68
41 31 0.26
42 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:87978240 original size:99 final size:98
Alignment explanation
Indices: 87978059--87978573 Score: 401
Period size: 99 Copynumber: 5.4 Consensus size: 98
87978049 GTATAATACT
* * * * ***
87978059 GATGCCAGGTCCCATACATGGTCTTACACTGGCTCATC-CA--TCAAGTTGATGCCATGTCCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATCTCATGCCAATGCCATGTCCCAA
* * *
87978121 ACATGGTATTACACTTACTATCAAAATTGAGGCT
65 ACATGGTCTTACACTAACTATCAAAATTGAGGCC
* * * *
87978155 GACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATTCATGCCAATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-CTCATGCCAATGCCATGTCCCAA
* * **
87978220 ACATGGTCTTACACTAACTATCGAAATCGAGGAT
65 ACATGGTCTTACACTAACTATCAAAATTGAGGCC
* * * * * *
87978254 GTTGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTCGTGCCAATGTCATGTCCTAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-CTCATGCCAATGCCATGTCCCAA
* * * * *
87978319 ACATGGTCTTACACTGACAC-CTCTATA-CG-TGCC
65 ACATGGTCTTACACT-A-ACTATCAAAATTGAGGCC
* * *
87978352 GATGCCATGTCCCAGACATGGTCTTACACT-G---ACACATCTCGTAGCCAATG-CATGTCCCAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCAT-GCCAATGCCATGTCCCAA
* *
87978412 ACAT-GTCTTACACTAGCT-T--ACATCTCGAGGCC
65 ACATGGTCTTACACTAACTATCAAAAT-T-GAGGCC
* *
87978444 GATG-CATGTCCCAGACAT-GTCTTACATTAGCTCTC-C-TCTCAATGCCGATGCCATGTCCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTC-ATGCCAATGCCATGTCCCAA
** * *
87978505 ACATGGTCTTACACTGGCTCT-AATAA-TGTGGCC
65 ACATGGTCTTACACTAACTATCAA-AATTGAGGCC
* *
87978538 GACG-CATGTCCCAGACAT-GTCTTACACTAGCACTCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA
87978574 AATAACCCGA
Statistics
Matches: 350, Mismatches: 46, Indels: 47
0.79 0.10 0.11
Matches are distributed among these distances:
88 2 0.01
90 11 0.03
91 17 0.05
92 27 0.08
93 31 0.09
94 63 0.18
95 4 0.01
96 34 0.10
97 2 0.01
98 30 0.09
99 122 0.35
100 5 0.01
101 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (98 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCATGCCAATGCCATGTCCCAAA
CATGGTCTTACACTAACTATCAAAATTGAGGCC
Found at i:87978284 original size:49 final size:48
Alignment explanation
Indices: 87978057--87978519 Score: 218
Period size: 49 Copynumber: 9.7 Consensus size: 48
87978047 GGGTATAATA
* * ** * *
87978057 CTGATGCCAGGTCCCATACATGGTCTTACACTGGCTCATC-CATC-AAG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAACT-ATCAAATCGAGG
* * * *
87978104 TTGATGCCATGTCCCAAACATGGTATTACACTTACTATCAAAATTGAGG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAACTATC-AAATCGAGG
* * * *
87978153 CTGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATTC-ATG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAACTATCA-A-A-TCGAGG
** *
87978203 CCAATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCGAGG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAACTATC-AAATCGAGG
* * * * * *
87978252 ATGTTGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTCG-TG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAACTATCA-A-A-TCGAGG
** * * * * * *
87978302 CCAATGTCATGTCCTAGACATGGTCTTACACTGACAC-CTC-TATACG-TG
1 CTGATGCCATGTCCCAAACATGGTCTTACACT-A-ACTATCAAAT-CGAGG
* * * **
87978350 CCGATGCCATGTCCCAGACATGGTCTTACACTGAC-A-CATCTCGTA-G
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAACTATCAAATCG-AGG
** * * **
87978396 CCAATG-CATGTCCCATACAT-GTCTTACACTAGCT-TACATCTCGAGG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAACTAT-CAAATCGAGG
* * * * * *** * *
87978442 CCGATG-CATGTCCCAGACAT-GTCTTACATTAGCTCTCCTCTCAATG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAACTATCAAATCGAGG
*
87978488 CCGATGCCATGTCCCAAACATGGTCTTACACT
1 CTGATGCCATGTCCCAAACATGGTCTTACACT
87978520 GGCTCTAATA
Statistics
Matches: 335, Mismatches: 57, Indels: 47
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.03
45 17 0.05
46 65 0.19
47 45 0.13
48 49 0.15
49 73 0.22
50 65 0.19
51 9 0.03
52 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (48 bp):
CTGATGCCATGTCCCAAACATGGTCTTACACTAACTATCAAATCGAGG
Found at i:87978450 original size:46 final size:47
Alignment explanation
Indices: 87978160--87978568 Score: 261
Period size: 46 Copynumber: 8.6 Consensus size: 47
87978150 AGGCTGACGC
* * * *
87978160 CATGTCCCAAACATGGTCTTACACTAGCTCTCACATATTC-ATGCCAATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-ACAT-CTCGAGGCCGATG
* * ** ** *
87978209 CCATGTCCCAGACATGGTCTTACACTAACTAT-CGAAATCGAGGATGTTG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTAC-ATCTCGAGGCCGATG
* * *
87978258 CCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTCG-TGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCT-ACAT-CTCGAGGCCGATG
* * * **
87978308 TCATGTCCTAGACATGGTCTTACACT-G-AC-ACCTCTATACGTGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTACATCTCGA-G-GCCGATG
* *
87978356 CCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTA-GCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTACATCTCG-AGGCCGATG
*
87978402 CATGTCCCATACATGTCTTACACTAGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAGGCCGATG
* * * *
87978448 CATGTCCCAGACATGTCTTACATTAGCTCT-CCTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAGGCCGATG
* * * * *
87978494 CCATGTCCCAAACATGGTCTTACACTGGCTCTA-ATAAT-GTGGCCGACG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTACAT-CTCGAGGCCGATG
87978542 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
87978569 ACTCAAATAA
Statistics
Matches: 288, Mismatches: 53, Indels: 40
0.76 0.14 0.10
Matches are distributed among these distances:
44 10 0.03
45 16 0.06
46 74 0.26
47 27 0.09
48 63 0.22
49 38 0.13
50 56 0.19
51 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAGGCCGATG
Found at i:87980067 original size:46 final size:46
Alignment explanation
Indices: 87979801--87980074 Score: 379
Period size: 46 Copynumber: 6.0 Consensus size: 46
87979791 TCTGACATGA
* * * * * *
87979801 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
87979847 TGCCATGGTATCTTTCAACCATGGTTTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
** * *
87979893 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
87979939 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
87979985 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
87980031 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
87980075 AGAGTACACT
Statistics
Matches: 212, Mismatches: 15, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 208 0.98
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:87982126 original size:11 final size:11
Alignment explanation
Indices: 87982110--87982157 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
87982100 CTTTATATAC
87982110 TAATAAAATAA
1 TAATAAAATAA
87982121 TAATAAAATATA
1 TAATAAAATA-A
* * *
87982133 TTATTAAGATAT
1 -TAATAAAATAA
87982145 TAATAAAATAA
1 TAATAAAATAA
87982156 TA
1 TA
87982158 TTTATCTAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
11 20 0.69
12 1 0.03
13 8 0.28
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:87993638 original size:46 final size:46
Alignment explanation
Indices: 87993588--87993763 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
87993578 TGGTTGAGCA
87993588 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
87993634 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
87993679 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
87993727 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87993764 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:87993744 original size:93 final size:93
Alignment explanation
Indices: 87993585--87993756 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
87993575 GGATGGTTGA
* *
87993585 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87993650 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
87993678 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87993743 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
87993757 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:87998973 original size:46 final size:46
Alignment explanation
Indices: 87998923--87999098 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
87998913 TGGTTGAGCA
87998923 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
87998969 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
87999014 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
87999062 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87999099 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:87999079 original size:93 final size:93
Alignment explanation
Indices: 87998920--87999091 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
87998910 GGATGGTTGA
* *
87998920 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87998985 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
87999013 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87999078 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
87999092 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:88002416 original size:94 final size:93
Alignment explanation
Indices: 88002170--88002577 Score: 318
Period size: 94 Copynumber: 4.4 Consensus size: 93
88002160 TTGGATATAT
* *
88002170 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCATGCTGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTA-G---GCTGATGCATGTC
* *
88002234 CCATACATGTCTTACACTAGCA--CAACTCT-
62 CCAAACATGTCTTACACTAGCACTCATCTCTG
* * * * * * *
88002263 TAGTCGATG-CGTGTCCCAGACA-CGTCTTACACTGGTTATC-TCTGTCGAGGCCGATGCATGTC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-AGT--AGGCTGATGCATGTC
*
88002325 CAAAACATGTCTTACAC-AGGCACTCATCTCTG
62 CCAAACATGTCTTACACTA-GCACTCATCTCTG
88002357 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTA-GGCTGATGCATGTCCCA
* * * * *
88002422 GACATGACTTACACTAGCCCTCGTCT-AG
65 AACATGTCTTACACTAGCACTCATCTCTG
* ** * * * * *
88002450 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAACCCTCGTCTGGATGCCGATGCATGTCCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-AGTAGGCTGATGCATGTCCC
* * * **
88002515 AGACATGGTCTTACACTGGCTCTCAT-AATG
64 AAACAT-GTCTTACACTAGCACTCATCTCTG
* *
88002545 TGGCCGAAG-CATGTCCTAGACAT-GTCTTACACT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
88002578 GGCGCACAAA
Statistics
Matches: 257, Mismatches: 39, Indels: 38
0.77 0.12 0.11
Matches are distributed among these distances:
90 1 0.00
91 31 0.12
92 15 0.06
93 38 0.15
94 128 0.50
95 43 0.17
96 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTAGGCTGATGCATGTCCCAA
ACATGTCTTACACTAGCACTCATCTCTG
Found at i:88002417 original size:47 final size:46
Alignment explanation
Indices: 88002171--88002577 Score: 237
Period size: 47 Copynumber: 8.7 Consensus size: 46
88002161 TGGATATATT
* * *
88002171 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCATAGTATG
* * * * *
88002218 CATGCTGATGCATGTCCCATACATGTCTTACACTAGC-A-CA-ACTCTTA
1 ---GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATAGT-ATG
* * * * * *
88002265 GTCGATGCGTGTCCCAGACACGTCTTACACTGGTTATC-TCTGTCGA-G
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCAT-AGT--ATG
* * * *
88002312 GCCGATGCATGTCCAAAACATGTCTTACAC-AGGC-ACTCAT-CTCTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTA-GCTA-TCATAGTATG
88002357 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTATG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCATAGTATG
* * *
88002406 GCTGATGCATGTCCCAGACATGACTTACACTAGCCCTCGTC-TAG-AT-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG--CT-ATCATAGTATG
* ** * * *
88002452 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACCCTCGTCTGGAT-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCAT-AGTATG
* * * *
88002500 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGCTATCATAGTATG
* *
88002547 GCCGAAGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
88002578 GGCGCACAAA
Statistics
Matches: 280, Mismatches: 51, Indels: 56
0.72 0.13 0.14
Matches are distributed among these distances:
44 27 0.10
45 5 0.02
46 43 0.15
47 121 0.43
48 58 0.21
49 20 0.07
50 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATAGTATG
Found at i:88002433 original size:141 final size:140
Alignment explanation
Indices: 88002171--88002579 Score: 368
Period size: 141 Copynumber: 2.9 Consensus size: 140
88002161 TGGATATATT
* * ** * * * *
88002171 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCATGCTGATGCATGTCCC
1 GCCGATGCCATGTCCAAAACATGGTCTTACACTAACACTCATCT--GGATGCCGATGCATGTCCC
* * * * * * *
88002236 ATACAT-GTCTTACACTAGC-A-CA-ACTCTTAGTCGATGCGTGTCCCAGACACGTCTTACACTG
64 AGACATGGTCTTACACTAGCTATCATAAT-ATGGCCGATGCATGTCCCAGACATGTCTTACACTG
*
88002297 GTTATCTCTGTC-GAG
128 G--ACCTC-GTCAGAG
* *
88002312 GCCGATG-CATGTCCAAAACAT-GTCTTACAC-AGGCACTCATCTCTG-TGCCGATGCCATGTCC
1 GCCGATGCCATGTCCAAAACATGGTCTTACACTA-ACACTCATCT-GGATGCCGATG-CATGTCC
* * * *
88002373 CAGACATGGTCTTACACTAGCTATCATAGTATGGCTGATGCATGTCCCAGACATGACTTACACTA
63 CAGACATGGTCTTACACTAGCTATCATAATATGGCCGATGCATGTCCCAGACATGTCTTACACTG
* *
88002438 GCCCTCGTCTAGAT
128 GACCTCGTC-AGAG
* * * *
88002452 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACCCTCGTCTGGATGCCGATGCATGTCCCAG
1 GCCGATGCCATGTCCAAAACATGGTCTTACACTAACACTCATCTGGATGCCGATGCATGTCCCAG
* * * * *
88002517 ACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCTAGACATGTCTTACACTGG
66 ACATGGTCTTACACTAGCTATCATAATATGGCCGATGCATGTCCCAGACATGTCTTACACTGG
88002580 CGCACAAATC
Statistics
Matches: 220, Mismatches: 36, Indels: 24
0.79 0.13 0.09
Matches are distributed among these distances:
137 7 0.03
138 17 0.08
139 33 0.15
140 22 0.10
141 114 0.52
142 26 0.12
143 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (140 bp):
GCCGATGCCATGTCCAAAACATGGTCTTACACTAACACTCATCTGGATGCCGATGCATGTCCCAG
ACATGGTCTTACACTAGCTATCATAATATGGCCGATGCATGTCCCAGACATGTCTTACACTGGAC
CTCGTCAGAG
Found at i:88003923 original size:23 final size:23
Alignment explanation
Indices: 88003897--88003943 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
88003887 ACTTTGGGAA
*
88003897 ACATAGAAAATTTTTAAAGGTAT
1 ACATAGAAAATTTTCAAAGGTAT
*
88003920 ACATAGAAAATTTTCAAATGTAT
1 ACATAGAAAATTTTCAAAGGTAT
88003943 A
1 A
88003944 AGGGTCACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (23 bp):
ACATAGAAAATTTTCAAAGGTAT
Found at i:88005293 original size:43 final size:42
Alignment explanation
Indices: 88005245--88005361 Score: 121
Period size: 41 Copynumber: 2.8 Consensus size: 42
88005235 AGCTCATACA
*
88005245 ATGCCAATATCCCAGAC-GAGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATGTAATCAAATAT-G
* * * *
88005288 ATGCCACTGTCCCAGACAGGGTCTTA-ACGAAATCATATATG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATATG
* * **
88005329 ATGTCAATGTCTCAGACATAGTCTTACATGTAA
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAA
88005362 ATATCAAATC
Statistics
Matches: 60, Mismatches: 12, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
41 22 0.37
42 15 0.25
43 22 0.37
44 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATATG
Found at i:88008686 original size:2 final size:2
Alignment explanation
Indices: 88008679--88008709 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
88008669 CAGCATATTT
88008679 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
88008710 TGTAGCTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:88008932 original size:68 final size:65
Alignment explanation
Indices: 88008886--88009030 Score: 179
Period size: 66 Copynumber: 2.2 Consensus size: 65
88008876 ATACTATGTG
* * * *
88008886 GTAGCTAGGTCACATGTGTG-ATACGAGATGTATACCATGTAGACAAGAGAGCTACGGGATAAAT
1 GTAGCTAGGTCACATGTGTGTATACGAGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAAT
* * * *
88008950 GTAGCTAGGTCGCATGTGTGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAA
1 GTAGCTAGGTCACATGTGTG-TATACGAGAAGGACACCATGTAGACAAGAGAGCTACGAGAT-AA
88009015 AT
64 AT
88009017 G--GCTAGGTCACATG
1 GTAGCTAGGTCACATG
88009031 GGTGGTACTA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
64 19 0.28
65 12 0.17
66 33 0.48
67 5 0.07
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (65 bp):
GTAGCTAGGTCACATGTGTGTATACGAGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAAT
Found at i:88010547 original size:12 final size:12
Alignment explanation
Indices: 88010530--88010555 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
88010520 GGTTTGGCGT
88010530 GGCCTAGCACAC
1 GGCCTAGCACAC
88010542 GGCCTAGCACAC
1 GGCCTAGCACAC
88010554 GG
1 GG
88010556 GTGTGTGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:88012691 original size:24 final size:24
Alignment explanation
Indices: 88012655--88012717 Score: 99
Period size: 24 Copynumber: 2.6 Consensus size: 24
88012645 GAGTCGATAT
* * *
88012655 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAAGTTGAA
88012679 TGGCACTATGTGTGCGAAGTTGAA
1 TGGCACTATGTGTGCGAAGTTGAA
88012703 TGGCACTATGTGTGC
1 TGGCACTATGTGTGC
88012718 TGGCTTGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.22, C:0.14, G:0.33, T:0.30
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAAGTTGAA
Found at i:88012725 original size:24 final size:22
Alignment explanation
Indices: 88012655--88012727 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 22
88012645 GAGTCGATAT
*
88012655 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGG--TTGAA
88012679 TGGCACTATGTGTGCGAAGTTGAA
1 TGGCACTATGTGTGCG--GTTGAA
88012703 TGGCACTATGTGTGCTGGCTTGAA
1 TGGCACTATGTGTGC-GG-TTGAA
88012727 T
1 T
88012728 ATCAATACAT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
23 1 0.02
24 41 0.93
25 1 0.02
26 1 0.02
ACGTcount: A:0.22, C:0.14, G:0.33, T:0.32
Consensus pattern (22 bp):
TGGCACTATGTGTGCGGTTGAA
Found at i:88019176 original size:24 final size:23
Alignment explanation
Indices: 88019140--88019201 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 23
88019130 AAGTCGATAT
* * *
88019140 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAAGTT-AA
*
88019164 TGGCACTATGTGTGTGAAGTTAA
1 TGGCACTATGTGTGCGAAGTTAA
88019187 TGGCACTATGTGTGC
1 TGGCACTATGTGTGC
88019202 TGGCTTGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
23 16 0.48
24 17 0.52
ACGTcount: A:0.23, C:0.13, G:0.32, T:0.32
Consensus pattern (23 bp):
TGGCACTATGTGTGCGAAGTTAA
Found at i:88023704 original size:194 final size:194
Alignment explanation
Indices: 88023356--88023736 Score: 532
Period size: 194 Copynumber: 2.0 Consensus size: 194
88023346 GAAAAATCAT
* ** * *
88023356 AATCATGTATCATATAAAGACTGGATTCAAACACATTGCCACATCTAGGATAATGGCTTTCATTA
1 AATCATGTATCATATAAAGACTCGATTCAAACACATCACCACATCTAGGAAAATGACTTTCATTA
** * * *
88023421 GTCATATGTCTTATTGTACGTTCCTTATTAGTAAAAAGCCTTTCCTGCTAGAAAAGCCATAAGAA
66 GTCATATGTCCCATTGTACGCTCCTTATTAGTAAAAAGCCTCTCCTACTAGAAAAGCCATAAGAA
** * *
88023486 AACCTGAACCCTTTGCGCTACTTTAGCCTTTCATATCAATTTCCACACATTGGAAAACTCTCAC
131 AACCCAAACCCTTTACGCTACTTTAGCCTTCCATATCAATTTCCACACATTGGAAAACTCTCAC
* * *
88023550 AATCATGTATCATATGAAGATTCGATTCGAACACATCACCACATCTAGGAAAATGACTTTCATTA
1 AATCATGTATCATATAAAGACTCGATTCAAACACATCACCACATCTAGGAAAATGACTTTCATTA
* * *
88023615 GTCATATGTCCCATTGTACGCT-CTCTATT-GATGAGAAGCCTCTCCTACTAGAAAAGCCATTAG
66 GTCATATGTCCCATTGTACGCTCCT-TATTAG-TAAAAAGCCTCTCCTACTAGAAAAGCCATAAG
* *
88023678 AAAACCCAAACTCTTTACGGTACTTTAGCCTTCCATATCAATTTCCACACATTGGAAAA
129 AAAACCCAAACCCTTTACGCTACTTTAGCCTTCCATATCAATTTCCACACATTGGAAAA
88023737 GTCCCCAAAA
Statistics
Matches: 163, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
193 3 0.02
194 160 0.98
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (194 bp):
AATCATGTATCATATAAAGACTCGATTCAAACACATCACCACATCTAGGAAAATGACTTTCATTA
GTCATATGTCCCATTGTACGCTCCTTATTAGTAAAAAGCCTCTCCTACTAGAAAAGCCATAAGAA
AACCCAAACCCTTTACGCTACTTTAGCCTTCCATATCAATTTCCACACATTGGAAAACTCTCAC
Found at i:88026051 original size:18 final size:18
Alignment explanation
Indices: 88026028--88026064 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
88026018 TTCAAAATTA
88026028 TGGGCCCATATGCCCGTG
1 TGGGCCCATATGCCCGTG
88026046 TGGGCCCATATGCCCGTG
1 TGGGCCCATATGCCCGTG
88026064 T
1 T
88026065 AGCCCACACG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.32, G:0.32, T:0.24
Consensus pattern (18 bp):
TGGGCCCATATGCCCGTG
Found at i:88038560 original size:11 final size:10
Alignment explanation
Indices: 88038518--88038582 Score: 53
Period size: 11 Copynumber: 6.5 Consensus size: 10
88038508 TGTAATTTTT
*
88038518 AAAATTTTAA
1 AAAATATTAA
88038528 AAAA-ATT-A
1 AAAATATTAA
* * *
88038536 AAATTTTTAC
1 AAAATATTAA
88038546 AAAATATTATA
1 AAAATATTA-A
88038557 AAAATATTAA
1 AAAATATTAA
*
88038567 ATAAATTTTAA
1 A-AAATATTAA
88038578 AAAAT
1 AAAAT
88038583 TCAAAAAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
8 4 0.09
9 4 0.09
10 17 0.40
11 18 0.42
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAATATTAA
Found at i:88038830 original size:2 final size:2
Alignment explanation
Indices: 88038823--88038852 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
88038813 AAAAACTAGA
88038823 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
88038853 GTAATTTAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:88039094 original size:2 final size:2
Alignment explanation
Indices: 88039087--88039120 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
88039077 CTAAAAAGGA
88039087 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
88039121 TAAGATTTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:88039420 original size:3 final size:3
Alignment explanation
Indices: 88039412--88039438 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
88039402 AACATATTTG
88039412 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
88039439 GTATATCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:88047690 original size:28 final size:28
Alignment explanation
Indices: 88047629--88047726 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
88047619 TCACAAATTG
** * *
88047629 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
88047658 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
88047686 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
88047714 GCACTAAGTGTGC
1 GCACTAAGTGTGC
88047727 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:88049762 original size:15 final size:15
Alignment explanation
Indices: 88049741--88049781 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
88049731 ATGACAGAGG
88049741 AATCCAAGATAAAGA
1 AATCCAAGATAAAGA
* * *
88049756 TATCCAAGGTACAGA
1 AATCCAAGATAAAGA
88049771 AATCCAAGATA
1 AATCCAAGATA
88049782 CCATATCATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (15 bp):
AATCCAAGATAAAGA
Found at i:88050058 original size:19 final size:19
Alignment explanation
Indices: 88050034--88050073 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
88050024 CAGAGAGACA
88050034 TAGAGCAATACAGATTATG
1 TAGAGCAATACAGATTATG
88050053 TAGAGCAATACAGATTATG
1 TAGAGCAATACAGATTATG
88050072 TA
1 TA
88050074 CCAGTCATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (19 bp):
TAGAGCAATACAGATTATG
Found at i:88056260 original size:15 final size:15
Alignment explanation
Indices: 88056239--88056279 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
88056229 ATGACAGAGG
88056239 AATCCAAGATAAAGA
1 AATCCAAGATAAAGA
* * *
88056254 TATCCAAGGTACAGA
1 AATCCAAGATAAAGA
88056269 AATCCAAGATA
1 AATCCAAGATA
88056280 CCATATCATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (15 bp):
AATCCAAGATAAAGA
Found at i:88056560 original size:19 final size:19
Alignment explanation
Indices: 88056532--88056571 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
88056522 CAGAGAGACA
*
88056532 TAGAGTAATACAGATTATG
1 TAGAGCAATACAGATTATG
88056551 TAGAGCAATACAGATTATG
1 TAGAGCAATACAGATTATG
88056570 TA
1 TA
88056572 CCAGTCATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.30
Consensus pattern (19 bp):
TAGAGCAATACAGATTATG
Found at i:88063205 original size:17 final size:17
Alignment explanation
Indices: 88063171--88063212 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
88063161 CCAAAATATT
88063171 AATT-AATTAATTTATC
1 AATTAAATTAATTTATC
* *
88063187 AATTAAATTATTTTCTC
1 AATTAAATTAATTTATC
*
88063204 AATCAAATT
1 AATTAAATT
88063213 CTAATTTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (17 bp):
AATTAAATTAATTTATC
Found at i:88063322 original size:19 final size:19
Alignment explanation
Indices: 88063298--88063337 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
88063288 CAAATTCATG
88063298 ATGACTAATTAA-TTCAATT
1 ATGACT-ATTAACTTCAATT
*
88063317 ATGACTTTTAACTTCAATT
1 ATGACTATTAACTTCAATT
88063336 AT
1 AT
88063338 TTAATAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (19 bp):
ATGACTATTAACTTCAATT
Found at i:88063540 original size:65 final size:65
Alignment explanation
Indices: 88063464--88063589 Score: 225
Period size: 65 Copynumber: 1.9 Consensus size: 65
88063454 TACTTCATCA
* *
88063464 TTTTCATTATTTTATAACATTGGTTCTACATGCAATTCATTTCTGGTTATCTTGAGCTAGCATTG
1 TTTTCATTATTTTATAACATTGATTCTACATGCAATTCATTTATGGTTATCTTGAGCTAGCATTG
*
88063529 TTTTCATTATTTTATAACATTGATTCTACATGCAATTCGTTTATGGTTATCTTGAGCTAGC
1 TTTTCATTATTTTATAACATTGATTCTACATGCAATTCATTTATGGTTATCTTGAGCTAGC
88063590 GGAGGGACCG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.24, C:0.15, G:0.13, T:0.48
Consensus pattern (65 bp):
TTTTCATTATTTTATAACATTGATTCTACATGCAATTCATTTATGGTTATCTTGAGCTAGCATTG
Found at i:88068324 original size:28 final size:28
Alignment explanation
Indices: 88068289--88068347 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
88068279 CTAGGGTATA
88068289 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
88068317 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
88068345 TCG
1 TCG
88068348 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:88069052 original size:54 final size:54
Alignment explanation
Indices: 88068985--88069135 Score: 239
Period size: 54 Copynumber: 2.8 Consensus size: 54
88068975 TACCCTACAA
* *
88068985 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * *
88069039 GGGTATTTTGGTAATTTTGTGAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
88069093 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
88069136 CTGTAAATTG
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:88069073 original size:81 final size:81
Alignment explanation
Indices: 88068982--88069135 Score: 227
Period size: 81 Copynumber: 1.9 Consensus size: 81
88068972 TTCTACCCTA
* * *
88068982 CAAGGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
88069047 TGGTAATTTTGTGAAC
66 TGGTAATTTTGTGAAC
* * * * * *
88069063 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
88069128 TGGTAATT
66 TGGTAATT
88069136 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
TGGTAATTTTGTGAAC
Found at i:88069142 original size:27 final size:27
Alignment explanation
Indices: 88068982--88069135 Score: 200
Period size: 27 Copynumber: 5.7 Consensus size: 27
88068972 TTCTACCCTA
*
88068982 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
88069009 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
88069036 CAGGGGTATTTTGGTAATTTTGTGAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
88069063 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
88069090 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
88069117 CAAGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
88069136 CTGTAAATTG
Statistics
Matches: 104, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:88069161 original size:81 final size:81
Alignment explanation
Indices: 88068993--88069162 Score: 180
Period size: 81 Copynumber: 2.1 Consensus size: 81
88068983 AAGGGTATTT
* * *
88068993 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
* ***
88069058 TGAACCAAGGGTATTT
66 TAAACCAAGGGTAAAA
** * * * * *
88069074 TAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTCTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
**
88069139 TAAATTGAA-GGTAAAA
66 TAAA-CCAAGGGTAAAA
88069155 CGGTAATT
1 CGGTAATT
88069163 CTGTAAACTG
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
81 68 0.97
82 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
TAAACCAAGGGTAAAA
Found at i:88069473 original size:27 final size:27
Alignment explanation
Indices: 88069130--88069451 Score: 411
Period size: 27 Copynumber: 11.9 Consensus size: 27
88069120 GGGTATTTTG
* * *
88069130 GTAATTCTGTAAATTGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
88069157 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* * *
88069184 GTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
88069211 GTAATTCTGTAAA-CTGAGGGGAAAACA
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* *
88069238 GTAATTCTGTAAATCGAGGATAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
88069265 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
*
88069292 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
88069319 GTAATTCTGTAAA-CTGAGGGGAAAACA
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* *
88069346 GTAATTCTGTAAATCGAGGATAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
88069373 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
*
88069400 GTAATTCTGTAATTCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
88069427 GTAATTCTGTAAATCGAGGGTAAAA
1 GTAATTCTGTAAATCGAGGGTAAAA
88069452 TGGTAATTTT
Statistics
Matches: 256, Mismatches: 29, Indels: 20
0.84 0.10 0.07
Matches are distributed among these distances:
26 4 0.02
27 247 0.96
28 5 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:88069473 original size:54 final size:54
Alignment explanation
Indices: 88069129--88069459 Score: 511
Period size: 54 Copynumber: 6.1 Consensus size: 54
88069119 AGGGTATTTT
* * **
88069129 GGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* * *
88069183 GGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGGAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
88069237 AGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
*
88069291 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGGAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
88069345 AGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* * *
88069399 GGTAATTCTGTAATTCGAGGGTAAAACAGTAATTCTGTAAA-TCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT-GAGGGTAAAAC
88069453 GGTAATT
1 GGTAATT
88069460 TTACAAGTCG
Statistics
Matches: 253, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
53 1 0.00
54 252 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
Found at i:88072281 original size:18 final size:18
Alignment explanation
Indices: 88072260--88072542 Score: 144
Period size: 18 Copynumber: 15.3 Consensus size: 18
88072250 GAACAATTAT
88072260 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
88072278 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * **
88072296 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAG
*
88072314 TTATTCAGTATC-GATCAATTG
1 TTATTCAGTAACAG-TC-A--G
*
88072335 ATTGATTATCCAGTAACAGTCAA
1 -TT-A-T-T-CAGTAACAGTCAG
* *
88072358 TTATTCAGTAA-AATCAA
1 TTATTCAGTAACAGTCAG
* * *
88072375 ATATTCAGTAACAATTAAG
1 TTATTCAGTAAC-AGTCAG
88072394 TTATTCAGTAACAGTC-G
1 TTATTCAGTAACAGTCAG
** *
88072411 TTCATTCAGCGACAATCAG
1 TT-ATTCAGTAACAGTCAG
* *
88072430 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* *
88072448 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAG
88072466 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAGTC-AG
* * *
88072484 CTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* * * *
88072502 TTATCCGGTAATAGTCAA
1 TTATTCAGTAACAGTCAG
* *
88072520 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAGTCAG
88072538 TTATT
1 TTATT
88072543 TTATACCTTT
Statistics
Matches: 202, Mismatches: 45, Indels: 36
0.71 0.16 0.13
Matches are distributed among these distances:
17 19 0.09
18 143 0.71
19 20 0.10
20 1 0.00
21 2 0.01
22 4 0.02
23 1 0.00
24 1 0.00
25 2 0.01
26 8 0.04
27 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:88072300 original size:36 final size:36
Alignment explanation
Indices: 88072247--88072542 Score: 193
Period size: 36 Copynumber: 8.0 Consensus size: 36
88072237 TCATTAACAC
* * *
88072247 TCAG-AACAATTATTTATTCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
* * * *
88072282 TCGGTAACAATCAATTATTCAATAATAACCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
* * * *
88072318 TCAGTATCGATCAATTGATTGATTATCCAGTAACAGTCAATTAT
1 TCAGTA---A-CAA-TCA---ATTATTCAGTAACAATCAGTTAT
* *
88072362 TCAGTAA-AATCAAATATTCAGTAACAATTAAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAA-TCAGTTAT
* * **
88072398 TCAGTAACAGTC-GTTCATTCAGCGACAATCAGTTAT
1 TCAGTAACAATCAATT-ATTCAGTAACAATCAGTTAT
** * *
88072434 TCAGTAATGATCAATTATTCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
* * * * * *
88072470 TCAGTAACAGTCTACTATCCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
* * * * *
88072506 CCGGTAATAGTCAATTATTCAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
88072542 T
1 T
88072543 TTATACCTTT
Statistics
Matches: 194, Mismatches: 54, Indels: 25
0.71 0.20 0.09
Matches are distributed among these distances:
35 15 0.08
36 130 0.67
37 15 0.08
38 2 0.01
39 3 0.02
40 3 0.02
41 3 0.02
44 23 0.12
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
Found at i:88072379 original size:17 final size:18
Alignment explanation
Indices: 88072339--88072542 Score: 151
Period size: 18 Copynumber: 11.3 Consensus size: 18
88072329 CAATTGATTG
* *
88072339 ATTATCCAGTAACAGTCA
1 ATTATTCAGTAACAATCA
88072357 ATTATTCAGTAA-AATCA
1 ATTATTCAGTAACAATCA
* *
88072374 AATATTCAGTAACAATTA
1 ATTATTCAGTAACAATCA
*
88072392 AGTTATTCAGTAACAGTC-
1 A-TTATTCAGTAACAATCA
* **
88072410 GTTCATTCAGCGACAATCA
1 ATT-ATTCAGTAACAATCA
* **
88072429 GTTATTCAGTAATGATCA
1 ATTATTCAGTAACAATCA
* *
88072447 ATTATTCAGTAATATTCA
1 ATTATTCAGTAACAATCA
* * *
88072465 GTTATTCAGTAACAGTCT
1 ATTATTCAGTAACAATCA
* * *
88072483 ACTATCCAGTAACAGTCA
1 ATTATTCAGTAACAATCA
* * * *
88072501 ATTATCCGGTAATAGTCA
1 ATTATTCAGTAACAATCA
*
88072519 ATTATTCAGTAATAATCA
1 ATTATTCAGTAACAATCA
*
88072537 GTTATT
1 ATTATT
88072543 TTATACCTTT
Statistics
Matches: 149, Mismatches: 33, Indels: 8
0.78 0.17 0.04
Matches are distributed among these distances:
17 17 0.11
18 116 0.78
19 16 0.11
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
ATTATTCAGTAACAATCA
Found at i:88072475 original size:72 final size:71
Alignment explanation
Indices: 88072341--88072542 Score: 226
Period size: 72 Copynumber: 2.8 Consensus size: 71
88072331 ATTGATTGAT
* * * * * *
88072341 TATCCAGTAACAGTCAATTATTCAGTAAAATCAAATATTCAGTAACAATTAAGTTATTCAGTAAC
1 TATCCAGCAACAATCAATTATTCAGTAATATCAATTATTCAGTAA-TATTCAGTTATTCAGTAAC
*
88072406 AGTCGTTC
65 AGTC-TAC
* * *
88072414 -ATTCAGCGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTAAC
1 TATCCAGCAACAATCAATTATTCAGTAAT-ATCAATTATTCAGTAATATTCAGTTATTCAGTAAC
88072478 AGTCTAC
65 AGTCTAC
* * * * *
88072485 TATCCAGTAACAGTCAATTATCCGGTAATAGTCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGCAACAATCAATTATTCAGTAATA-TCAATTATTCAGTAATATTCAGTTATT
88072543 TTATACCTTT
Statistics
Matches: 108, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
71 3 0.03
72 90 0.83
73 15 0.14
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (71 bp):
TATCCAGCAACAATCAATTATTCAGTAATATCAATTATTCAGTAATATTCAGTTATTCAGTAACA
GTCTAC
Found at i:88072772 original size:45 final size:45
Alignment explanation
Indices: 88072700--88072804 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
88072690 ACAAATTCGG
*
88072700 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCGAT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
* * * *
88072745 AACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAGTCGGT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
*
88072790 AACAGTAACGGTAAC
1 AACAGTAACAGTAAC
88072805 GTAACAGTAG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (45 bp):
AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
Found at i:88073080 original size:2 final size:2
Alignment explanation
Indices: 88073073--88073100 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
88073063 ATTCAATTCA
88073073 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
88073101 CTCAATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:88074585 original size:2 final size:2
Alignment explanation
Indices: 88074580--88074614 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
88074570 TTTACTTTAC
88074580 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
88074615 ATAATAATTC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:88074749 original size:15 final size:15
Alignment explanation
Indices: 88074729--88074768 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
88074719 ATTTATTTCA
88074729 TAATAAATATCAAT-T
1 TAATAAATAT-AATAT
*
88074744 TAATAAAAATAATAT
1 TAATAAATATAATAT
88074759 TAATAAATAT
1 TAATAAATAT
88074769 TAAATGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 3 0.14
15 19 0.86
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (15 bp):
TAATAAATATAATAT
Found at i:88075380 original size:107 final size:107
Alignment explanation
Indices: 88075176--88075381 Score: 261
Period size: 107 Copynumber: 1.9 Consensus size: 107
88075166 CAAAGTCTTG
*
88075176 ACCAGTTCACGAGGCTGCTCGCACAAGCTGACGAGAATCCGCAACGAATGCAGGATCTCAGCCAT
1 ACCAGTTCACGAGGCTGCTCACACAAGCTGACGAGAATCCGCAACGAATGCAGGATCTCAGCCAT
* * * *
88075241 CTTAATGACCTGTTTCATCAAAACAGAGTATTCAGTCATTTC
66 CATAATGACCTGTATCAACAAAACAGAATATTCAGTCATTTC
* ** *
88075283 ACCAGTTCACGATGCTGCTCACACAAGCTTTCGAGAATCCGCAAC-ATATTCAGGATCTCAGCCA
1 ACCAGTTCACGAGGCTGCTCACACAAGCTGACGAGAATCCGCAACGA-ATGCAGGATCTCAGCCA
* *** * *
88075347 TCATGATGGTGTGTATCAACAGAGCAGAATATTCA
65 TCATAATGACCTGTATCAACAAAACAGAATATTCA
88075382 TTTAGTATTC
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
106 1 0.01
107 82 0.99
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (107 bp):
ACCAGTTCACGAGGCTGCTCACACAAGCTGACGAGAATCCGCAACGAATGCAGGATCTCAGCCAT
CATAATGACCTGTATCAACAAAACAGAATATTCAGTCATTTC
Found at i:88082928 original size:26 final size:26
Alignment explanation
Indices: 88082890--88082945 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
88082880 TTAATTTCAT
88082890 TTAATTAACAGAATCCAACAATAAAA
1 TTAATTAACAGAATCCAACAATAAAA
*
88082916 TTAATTAATAGAATCCAACAATAAAA
1 TTAATTAACAGAATCCAACAATAAAA
88082942 TTAA
1 TTAA
88082946 GTCTTTTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.57, C:0.12, G:0.04, T:0.27
Consensus pattern (26 bp):
TTAATTAACAGAATCCAACAATAAAA
Found at i:88088136 original size:56 final size:55
Alignment explanation
Indices: 88088041--88088151 Score: 145
Period size: 56 Copynumber: 2.0 Consensus size: 55
88088031 ATGAAAAAAA
88088041 AAAGAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
* ***
88088096 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAATGTGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
88088152 GAAAAGGGGG
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
55 10 0.20
56 36 0.73
57 3 0.06
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (55 bp):
AAAGAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:88089412 original size:40 final size:40
Alignment explanation
Indices: 88089346--88089512 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
88089336 AAATTGAATG
* * *
88089346 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
88089385 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
88089425 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
88089465 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
88089505 ATATCCGG
1 ATATCCGG
88089513 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:88097422 original size:40 final size:40
Alignment explanation
Indices: 88097356--88097522 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
88097346 AAATTGAATG
* * *
88097356 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
88097395 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
88097435 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
88097475 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
88097515 ATATCCGG
1 ATATCCGG
88097523 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:88106949 original size:16 final size:15
Alignment explanation
Indices: 88106928--88106970 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
88106918 TTAGTTAAAA
88106928 TTATTTTAATGTATTT
1 TTATTTTAAT-TATTT
*
88106944 TTATTTATTATTATTT
1 TTATTT-TAATTATTT
*
88106960 TTAGTTTAATT
1 TTATTTTAATT
88106971 GCTAGCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 4 0.17
16 16 0.70
17 3 0.13
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.70
Consensus pattern (15 bp):
TTATTTTAATTATTT
Found at i:88108291 original size:48 final size:47
Alignment explanation
Indices: 88108220--88108447 Score: 258
Period size: 48 Copynumber: 4.8 Consensus size: 47
88108210 TGATATGTGT
* *
88108220 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCA-TATGAGA
* * * * *
88108268 GCTAGTGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCATATGAGA
* * * * * *
88108316 GCTAGTGTAAGACCATGTCTAGGAAATGGCATCGGCATTGAGAAGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCATATGAGA
* * *
88108364 GCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC-ATATGAGA
* *
88108412 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
88108448 TATTTACCCT
Statistics
Matches: 152, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
47 1 0.01
48 150 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATATGAGA
Found at i:88108375 original size:96 final size:92
Alignment explanation
Indices: 88108210--88108447 Score: 305
Period size: 96 Copynumber: 2.5 Consensus size: 92
88108200 AACATTTGGG
* * * *
88108210 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCTAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCT-GGAAATGGCATCG---GCATTAAGAGAGCTAGTA
*
88108275 TAAGACCATATCTGGGACATGGCATCGGCGT
62 TAAGACCATATCTGGGACATGGCATCGGCCT
88108306 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGAAATGGCATCGGCATTGAGAAGAGAGCTAGTA
1 TGATATGTGTGCTAGTGTAAGACCATGTCT-GGAAATGGCATCGGCATT---AAGAGAGCTAGTA
*
88108371 TAAGACCATGTCTGGGACATGGCATCGGCCT
62 TAAGACCATATCTGGGACATGGCATCGGCCT
* * * *
88108402 CGACATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGAA-ATGGCATCGGC
88108448 TATTTACCCT
Statistics
Matches: 127, Mismatches: 11, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
93 4 0.03
95 4 0.03
96 119 0.94
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (92 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGGAAATGGCATCGGCATTAAGAGAGCTAGTATAAG
ACCATATCTGGGACATGGCATCGGCCT
Found at i:88112414 original size:24 final size:23
Alignment explanation
Indices: 88112370--88112415 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
88112360 ATTGATATTC
*
88112370 TATATAAAAAACATATTAAATTT
1 TATATAAAAAACATATAAAATTT
88112393 TATATGAAAAAA-ATTATAAAATT
1 TATAT-AAAAAACA-TATAAAATT
88112416 ACTTAGTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (23 bp):
TATATAAAAAACATATAAAATTT
Found at i:88114989 original size:40 final size:40
Alignment explanation
Indices: 88114892--88115033 Score: 126
Period size: 40 Copynumber: 3.6 Consensus size: 40
88114882 GAATCACGTA
*
88114892 CCTTCGGGAT-TTAA-CCGGATATAGTGACTCGCTCGATTG
1 CCTTCGGG-TCTTAACCCGGATATAGTGACTCGCACGATTG
* * * * * *
88114931 TCTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTG
1 CCTTCGGGTCTTAACCCGGATATAGTGACTCGCACGATTG
* * * * * *
88114971 CCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCTTCGGGTCTTAACCCGGATATAGTGACTCGCACGATTG
* *
88115011 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTAACCCGGATAT
88115034 CATTCCAATG
Statistics
Matches: 79, Mismatches: 22, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
39 9 0.11
40 70 0.89
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAGTGACTCGCACGATTG
Found at i:88116765 original size:49 final size:52
Alignment explanation
Indices: 88116689--88116795 Score: 139
Period size: 49 Copynumber: 2.1 Consensus size: 52
88116679 GTCACAGAAT
* * *
88116689 ACACCTGGGCACTAAGTGCCAAACCCGTAGGC-TAACATCC-CTC-CAAAAC
1 ACACCTCGGCACCAAGTGCCAAACCCGTAGGCTTAACATCCTCCCTCAAAAC
* * *
88116738 ACACCTCGGCACCAAGTGTCAAGCCCGTAGGCTTTACATCCTCCCTCAAAAC
1 ACACCTCGGCACCAAGTGCCAAACCCGTAGGCTTAACATCCTCCCTCAAAAC
88116790 ACACCT
1 ACACCT
88116796 GAAACACTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
49 28 0.57
50 7 0.14
51 2 0.04
52 12 0.24
ACGTcount: A:0.30, C:0.38, G:0.15, T:0.17
Consensus pattern (52 bp):
ACACCTCGGCACCAAGTGCCAAACCCGTAGGCTTAACATCCTCCCTCAAAAC
Found at i:88121229 original size:29 final size:29
Alignment explanation
Indices: 88121173--88121230 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
88121163 ACTATTACCC
* *
88121173 TCATTCTAAATTTATCCCTAAATTTCAAG
1 TCATTCTAAATTAATCCCTAAATATCAAG
*
88121202 TCATTCT-AATTAATCCGTAAACTATCAAG
1 TCATTCTAAATTAATCCCTAAA-TATCAAG
88121231 ATTATATCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (29 bp):
TCATTCTAAATTAATCCCTAAATATCAAG
Found at i:88123996 original size:14 final size:15
Alignment explanation
Indices: 88123973--88124001 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
88123963 TTTTTATAAC
88123973 TTTTATTAATTTTTT
1 TTTTATTAATTTTTT
88123988 TTTTA-TAATTTTTT
1 TTTTATTAATTTTTT
88124002 GTCACATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTATTAATTTTTT
Found at i:88128398 original size:16 final size:16
Alignment explanation
Indices: 88128373--88128410 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
88128363 TATTAATTAG
88128373 AATT-TATTAAATAAA
1 AATTATATTAAATAAA
*
88128388 AATTATATTAACTAAA
1 AATTATATTAAATAAA
88128404 ATATTAT
1 A-ATTAT
88128411 TCCAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 11 0.55
17 5 0.25
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
AATTATATTAAATAAA
Found at i:88129904 original size:111 final size:111
Alignment explanation
Indices: 88129710--88130051 Score: 675
Period size: 111 Copynumber: 3.1 Consensus size: 111
88129700 CCAATGGGAT
88129710 GCAACAAAAAGAAAAAAATTAACAATCAGCTGAAAGCAGAACCTAGAAGACTACATGTGATACTC
1 GCAACAAAAAGAAAAAAATTAACAATCAGCTGAAAGCAGAACCTAGAAGACTACATGTGATACTC
88129775 ACAGCTCACTATTTTGTTTAAGAGAAATGTTCAAAAATTATTAAAA
66 ACAGCTCACTATTTTGTTTAAGAGAAATGTTCAAAAATTATTAAAA
88129821 GCAACAAAAAGAAAAAAATTAACAATCAGCTGAAAGCAGAACCTAGAAGACTACATGTGATACTC
1 GCAACAAAAAGAAAAAAATTAACAATCAGCTGAAAGCAGAACCTAGAAGACTACATGTGATACTC
88129886 ACAGCTCACTATTTTGTTTAAGAGAAATGTTCAAAAATTATTAAAA
66 ACAGCTCACTATTTTGTTTAAGAGAAATGTTCAAAAATTATTAAAA
88129932 GCAACAAAAAGAAAAAAATTAACAATCAGCTGAAAGCAGAACCTAGAAGACTACATGTGATACTC
1 GCAACAAAAAGAAAAAAATTAACAATCAGCTGAAAGCAGAACCTAGAAGACTACATGTGATACTC
*
88129997 ACAGCTCACTATTTTGTTTAAGAGAAATGTTCACAAATTATTAAAA
66 ACAGCTCACTATTTTGTTTAAGAGAAATGTTCAAAAATTATTAAAA
88130043 GCAACAAAA
1 GCAACAAAA
88130052 GTTAAAGGCT
Statistics
Matches: 230, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 230 1.00
ACGTcount: A:0.48, C:0.16, G:0.13, T:0.23
Consensus pattern (111 bp):
GCAACAAAAAGAAAAAAATTAACAATCAGCTGAAAGCAGAACCTAGAAGACTACATGTGATACTC
ACAGCTCACTATTTTGTTTAAGAGAAATGTTCAAAAATTATTAAAA
Found at i:88136062 original size:40 final size:40
Alignment explanation
Indices: 88136018--88136097 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
88136008 ACCAATCATC
88136018 GAATCGTTACTTGGAGCTCGTTAGTGAAATGTAAAAAATA
1 GAATCGTTACTTGGAGCTCGTTAGTGAAATGTAAAAAATA
88136058 GAATCGTTACTTGGAGCTCGTTAGTGAAATGTAAAAAATA
1 GAATCGTTACTTGGAGCTCGTTAGTGAAATGTAAAAAATA
88136098 AACTTAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (40 bp):
GAATCGTTACTTGGAGCTCGTTAGTGAAATGTAAAAAATA
Found at i:88136796 original size:22 final size:22
Alignment explanation
Indices: 88136768--88136812 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
88136758 AACGCCACTA
88136768 TAGATCGAGCATTAGCGGCGTT
1 TAGATCGAGCATTAGCGGCGTT
88136790 TAGATCGAGCATTAGCGGCGTT
1 TAGATCGAGCATTAGCGGCGTT
88136812 T
1 T
88136813 CATGAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (22 bp):
TAGATCGAGCATTAGCGGCGTT
Found at i:88137026 original size:40 final size:40
Alignment explanation
Indices: 88136948--88137032 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
88136938 CGCTGCTATC
* *
88136948 GCCGCTATAGATCGAGCATTAGCGGTGCCTTTTGAAAAAT
1 GCCGCTATAGATCGAGCATTAGCGGCGCCTTTTAAAAAAT
* **
88136988 GCCGCTATAGATCTAGCATTAGCGGCGTTTTTTAAAAAAT
1 GCCGCTATAGATCGAGCATTAGCGGCGCCTTTTAAAAAAT
*
88137028 ACCGC
1 GCCGC
88137033 AAAAAAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCGCTATAGATCGAGCATTAGCGGCGCCTTTTAAAAAAT
Found at i:88141447 original size:12 final size:12
Alignment explanation
Indices: 88141430--88141455 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
88141420 AAGATCGAGG
88141430 GATGAATCTGAT
1 GATGAATCTGAT
88141442 GATGAATCTGAT
1 GATGAATCTGAT
88141454 GA
1 GA
88141456 AGAGGGTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:88148026 original size:47 final size:47
Alignment explanation
Indices: 88147957--88148047 Score: 173
Period size: 47 Copynumber: 1.9 Consensus size: 47
88147947 TGAATTTTTT
*
88147957 AAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGCTTG
1 AAGTATCATTTAGATTTACTGTTATTGGTTGGATTTGATGTTGCTTG
88148004 AAGTATCATTTAGATTTACTGTTATTGGTTGGATTTGATGTTGC
1 AAGTATCATTTAGATTTACTGTTATTGGTTGGATTTGATGTTGC
88148048 AGGAAGGATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.21, C:0.07, G:0.24, T:0.48
Consensus pattern (47 bp):
AAGTATCATTTAGATTTACTGTTATTGGTTGGATTTGATGTTGCTTG
Found at i:88148283 original size:15 final size:14
Alignment explanation
Indices: 88148259--88148300 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
88148249 CCGCGAAATG
88148259 TTAGCAGCGTTATTT
1 TTAGCAGCGTT-TTT
*
88148274 TTAGCGGCGTTTTT
1 TTAGCAGCGTTTTT
88148288 TT-GCAGCGCTTTT
1 TTAGCAGCG-TTTT
88148301 AGTTTTAGCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 5 0.21
14 9 0.38
15 10 0.42
ACGTcount: A:0.12, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
TTAGCAGCGTTTTT
Found at i:88148427 original size:18 final size:19
Alignment explanation
Indices: 88148396--88148432 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
88148386 TTCCATTAGG
88148396 TTAATTTAGGTTAATTAAT
1 TTAATTTAGGTTAATTAAT
*
88148415 TTAA-TTAGTTTAATTAAT
1 TTAATTTAGGTTAATTAAT
88148433 ATTTTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
TTAATTTAGGTTAATTAAT
Found at i:88157385 original size:3 final size:3
Alignment explanation
Indices: 88157377--88157411 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
88157367 TTGTTATACT
88157377 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
88157412 CTTAATCTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:88157803 original size:14 final size:14
Alignment explanation
Indices: 88157769--88157803 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
88157759 ACCCTTTTCA
*
88157769 TTGCCAATTGCCAC
1 TTGCCACTTGCCAC
*
88157783 TTGCCACTTGCCAT
1 TTGCCACTTGCCAC
88157797 TTGCCAC
1 TTGCCAC
88157804 CTATATCTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.37, G:0.14, T:0.31
Consensus pattern (14 bp):
TTGCCACTTGCCAC
Found at i:88159607 original size:16 final size:17
Alignment explanation
Indices: 88159586--88159617 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
88159576 TAGTGAACAA
88159586 AAAATAAAAA-AATTTG
1 AAAATAAAAACAATTTG
88159602 AAAATAAAAACAATTT
1 AAAATAAAAACAATTT
88159618 TCATGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (17 bp):
AAAATAAAAACAATTTG
Found at i:88162436 original size:17 final size:17
Alignment explanation
Indices: 88162388--88162439 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
88162378 CCAAAATATT
*
88162388 ATTTATTTAATT-AATCA
1 ATTTA-TTAATTAAATTA
*
88162405 ATTTAATTAACTAAATTA
1 ATTT-ATTAATTAAATTA
88162423 ATTTATTAATTAAATTA
1 ATTTATTAATTAAATTA
88162440 TTTTCTTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 21 0.70
18 9 0.30
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTATTAATTAAATTA
Found at i:88162448 original size:17 final size:17
Alignment explanation
Indices: 88162404--88162450 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
88162394 TTAATTAATC
88162404 AATTTAATTAACTAAATT
1 AATTT-ATTAACTAAATT
*
88162422 AATTTATTAATTAAATT
1 AATTTATTAACTAAATT
* *
88162439 ATTTTCTTAACT
1 AATTTATTAACT
88162451 CAGTTTTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (17 bp):
AATTTATTAACTAAATT
Found at i:88185471 original size:17 final size:18
Alignment explanation
Indices: 88185449--88185485 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
88185439 TTTACAACAG
*
88185449 TTATTTTATTC-TTATAA
1 TTATTTTATCCTTTATAA
88185466 TTATTTTATCCTTTATAA
1 TTATTTTATCCTTTATAA
88185484 TT
1 TT
88185486 TTAAGGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (18 bp):
TTATTTTATCCTTTATAA
Found at i:88191281 original size:45 final size:45
Alignment explanation
Indices: 88191193--88191289 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 45
88191183 AGAATGAATA
* *
88191193 GAAATAGAGAAATGGAAAACATTCAGAAATGATTATGGTTTTCTCT
1 GAAATGGAGAAATGGAAAACATTCAGAAATGAATATGGTTTTCT-T
* ** *
88191239 GAAATGGAGAAATGG-AATCATTTGGAAATGAATGTGGTTTTCTT
1 GAAATGGAGAAATGGAAAACATTCAGAAATGAATATGGTTTTCTT
88191283 -AAATGGA
1 GAAATGGA
88191290 AATGAAAATG
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
43 7 0.16
44 1 0.02
45 23 0.51
46 14 0.31
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (45 bp):
GAAATGGAGAAATGGAAAACATTCAGAAATGAATATGGTTTTCTT
Done.