Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 288 of 433
Found at i:89855072 original size:48 final size:47
Alignment explanation
Indices: 89854866--89855085 Score: 212
Period size: 46 Copynumber: 4.7 Consensus size: 47
89854856 TGATATGTGT
* * * *
89854866 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCAC--ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATAT-AAA
* * *
89854912 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATA-AA
* * * * * * * ** *
89854960 GCCAATATAAGACATGTCTGGCACATGCATCGGCATTGAGA-CGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATAAA
89855006 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATA-AA
* *
89855054 GCTAGTGTAGGACCTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
89855086 AGCTTGTTTC
Statistics
Matches: 140, Mismatches: 28, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
46 68 0.49
47 3 0.02
48 64 0.46
49 5 0.04
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATAAA
Found at i:89855072 original size:94 final size:95
Alignment explanation
Indices: 89854908--89855085 Score: 268
Period size: 94 Copynumber: 1.9 Consensus size: 95
89854898 GCCACATTAT
*
89854908 GAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCCAATATAAGAC
1 GAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAAATATACAAGCCAATATAAGAC
89854973 ATGTCTGGCACAT-GCATCGGCATTGAGAC
66 ATGTCTGGCACATGGCATCGGCATTGAGAC
* * * * * *
89855002 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATACAAGCTAGTGTAGGAC
1 GAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAAATATACAAGCCAATATAAGAC
* *
89855067 CTGTCTGGGACATGGCATC
66 ATGTCTGGCACATGGCATC
89855086 AGCTTGTTTC
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
94 69 0.93
95 5 0.07
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (95 bp):
GAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAAATATACAAGCCAATATAAGAC
ATGTCTGGCACATGGCATCGGCATTGAGAC
Found at i:89855236 original size:49 final size:49
Alignment explanation
Indices: 89855098--89855268 Score: 132
Period size: 49 Copynumber: 3.5 Consensus size: 49
89855088 CTTGTTTCGT
* * * * *
89855098 GTCAGTGTAAGAACTGTT-TAGGACATGGCATCAACACCGATAGATGAGA
1 GTCAGTGTAAGACCT-TTCTGGGACATGGCATCGACATCGATAGATGAAA
* * * * * * * *
89855147 GCCAATGTAAGACCTATCCGGGACACGGCATCGGCCTCGATATATGAAA
1 GTCAGTGTAAGACCTTTCTGGGACATGGCATCGACATCGATAGATGAAA
* * **
89855196 GTCAGTGTAAGACCTTTCTGGGACATGGCATTGACTTCGAT-G-TGCTA
1 GTCAGTGTAAGACCTTTCTGGGACATGGCATCGACATCGATAGATGAAA
* *
89855243 GCCAGTGTAAGACCATGTCTGGGACA
1 GTCAGTGTAAGACC-TTTCTGGGACA
89855269 AGGGTTTGAC
Statistics
Matches: 94, Mismatches: 26, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
47 16 0.17
48 11 0.12
49 67 0.71
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACCTTTCTGGGACATGGCATCGACATCGATAGATGAAA
Found at i:89858773 original size:67 final size:67
Alignment explanation
Indices: 89858695--89858823 Score: 231
Period size: 67 Copynumber: 1.9 Consensus size: 67
89858685 CTATCTTCTG
89858695 ATGAAATTCTTGTTATATAGGAGTATTATCTAATCTTAAAGATAGACAAAGACATTCTCAGTCTC
1 ATGAAATTCTTGTTATATAGGAGTATTATCTAATCTTAAAGATAGACAAAGACATTCTCAGTCTC
89858760 TA
66 TA
* * *
89858762 ATGAAATTCTTGTTATATGGGAGTGTTATCTAATCTTAATGATAGACAAAGACATTCTCAGT
1 ATGAAATTCTTGTTATATAGGAGTATTATCTAATCTTAAAGATAGACAAAGACATTCTCAGT
89858824 ATGATTGGTA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (67 bp):
ATGAAATTCTTGTTATATAGGAGTATTATCTAATCTTAAAGATAGACAAAGACATTCTCAGTCTC
TA
Found at i:89859175 original size:15 final size:15
Alignment explanation
Indices: 89859093--89859182 Score: 56
Period size: 15 Copynumber: 6.0 Consensus size: 15
89859083 TATGGTATCG
*
89859093 TATCTTGGATTTCTC
1 TATCTTGGATTTCTT
**
89859108 TATCTTGGACCTCTT
1 TATCTTGGATTTCTT
* *
89859123 TATTTTGGATCTCTT
1 TATCTTGGATTTCTT
* * *
89859138 AAT-TCTGGGTTTCTC
1 TATCT-TGGATTTCTT
** *
89859153 CGTTTTGGATTTCTT
1 TATCTTGGATTTCTT
*
89859168 TATCTTGGCTTTCTT
1 TATCTTGGATTTCTT
89859183 ACCATCTCTA
Statistics
Matches: 56, Mismatches: 17, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
14 1 0.02
15 54 0.96
16 1 0.02
ACGTcount: A:0.11, C:0.19, G:0.16, T:0.54
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:89859181 original size:30 final size:30
Alignment explanation
Indices: 89859125--89859181 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
89859115 GACCTCTTTA
*
89859125 TTTTGGATCTCTTAATTCTGGGTTTCTCCG
1 TTTTGGATCTCTTAATTCTGGCTTTCTCCG
* *
89859155 TTTTGGATTTCTTTA-TCTTGGCTTTCT
1 TTTTGGATCTCTTAATTC-TGGCTTTCT
89859182 TACCATCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 2 0.09
30 21 0.91
ACGTcount: A:0.09, C:0.18, G:0.18, T:0.56
Consensus pattern (30 bp):
TTTTGGATCTCTTAATTCTGGCTTTCTCCG
Found at i:89860880 original size:50 final size:47
Alignment explanation
Indices: 89860755--89860923 Score: 172
Period size: 47 Copynumber: 3.6 Consensus size: 47
89860745 AGGTGTAAGG
89860755 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATTAAGT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATT-AGT
*
89860803 -CGATGCCAAGTCCCAGACATGGTCTTACACTGGCTTTCATCTC-TCT-GT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCATC-CAT-TAGT
* * * *
89860851 ACCGATGCCATGTCCCAGACATGGCCTTACACTGACACATCTC-GTAG-
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATTAGT
*
89860898 CCGATG-CATGTCCCCGACAT-GTCTTA
1 CCGATGCCATGTCCCAGACATGGTCTTA
89860924 TGCTAACTTA
Statistics
Matches: 106, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
44 5 0.05
45 13 0.12
46 6 0.06
47 34 0.32
48 9 0.08
49 6 0.06
50 33 0.31
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATTAGT
Found at i:89868260 original size:95 final size:95
Alignment explanation
Indices: 89868151--89868334 Score: 359
Period size: 95 Copynumber: 1.9 Consensus size: 95
89868141 TCTTGATAGA
89868151 TATACAAGTTTTGTTAAGTGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGAGAAATGTTG
1 TATACAAGTTTTGTTAAGTGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGAGAAATGTTG
89868216 AAACTTTGTGATTAAAATGTGAAAATATAT
66 AAACTTTGTGATTAAAATGTGAAAATATAT
*
89868246 TATACAAGTTTTGTTAAGTGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTTAGAAATGTTG
1 TATACAAGTTTTGTTAAGTGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGAGAAATGTTG
89868311 AAACTTTGTGATTAAAATGTGAAA
66 AAACTTTGTGATTAAAATGTGAAA
89868335 TAAATGAAAA
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 88 1.00
ACGTcount: A:0.41, C:0.03, G:0.19, T:0.37
Consensus pattern (95 bp):
TATACAAGTTTTGTTAAGTGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGAGAAATGTTG
AAACTTTGTGATTAAAATGTGAAAATATAT
Found at i:89877882 original size:45 final size:46
Alignment explanation
Indices: 89877733--89877905 Score: 192
Period size: 45 Copynumber: 3.7 Consensus size: 46
89877723 GGTCACTTGT
* * *** * *
89877733 GAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGC-CACATTAT
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCGTTGA-GAC
*
89877779 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGAATCAGCGTTGAGAC
1 GAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCGTTGAGAC
*
89877827 GAGTGCTAGTGTAAGACATGTCTGGGACATGCAT-AGTC-TTGAGAC
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CGTTGAGAC
89877872 GTA-AGCTAGTGTAAGACATGTCTGGGACATGCAT
1 G-AGAGCTAGTGTAAGACATGTCTGGGACATGCAT
89877906 TAGCTACGAG
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
45 40 0.36
46 21 0.19
47 27 0.24
48 22 0.20
49 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (46 bp):
GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCGTTGAGAC
Found at i:89880914 original size:46 final size:43
Alignment explanation
Indices: 89880791--89880916 Score: 135
Period size: 46 Copynumber: 2.8 Consensus size: 43
89880781 AGATATGTGT
* *
89880791 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCAT---CGACATTACGAGA
* * * * *
89880837 GCCAGTGTAAGACATGTTTAGAACATGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATT---ACGAGA
89880883 GCTAGTGTAAGACATGTCTGGGACATGCATCGAC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGAC
89880917 CTCGAAATAT
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
43 5 0.08
46 60 0.92
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (43 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTACGAGA
Found at i:89881044 original size:49 final size:48
Alignment explanation
Indices: 89880794--89881153 Score: 206
Period size: 49 Copynumber: 7.6 Consensus size: 48
89880784 TATGTGTGCT
* * * ** *
89880794 AGTGTAAGACATGTCTGGGACAT-GCATCAACCACAT-TATGAGAGCC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACCTGATAGATGAGAGCC
* * * * * * *
89880840 AGTGTAAGACATGTTTAGAACAT-GCATCGGCAT--TGAGACGAGAGCT
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACCTGAT-AGATGAGAGCC
* * * * * *
89880886 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGAAATAT-ACAAGCT
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACCT-GATAGATGA-GAGCC
* * * * * * *
89880934 AGTGTAAGACCTATCTGGGACATGGCATC-AGCT--TA-TTGTGTGTC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACCTGATAGATGAGAGCC
89880978 AGTGTAAGACCTGTTTGGGACATGGCATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGAC-CTGATAGATGAGAGCC
* * * * * * *
89881027 AGTGTAAGACCTATTTGGGACACGGCATCGGCCTCAATATATGAAAGTC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACCT-GATAGATGAGAGCC
* * * **
89881076 AGTGTAAGACCTGTTTGAGACATGACATCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGAC-CTGATAGATGAGAGCC
* *
89881123 AGTGCAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACC-TGTTTGGGACATGGCATCG
89881154 GCATCTTACT
Statistics
Matches: 240, Mismatches: 58, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
44 30 0.12
45 2 0.01
46 63 0.26
47 16 0.07
48 50 0.21
49 78 0.32
50 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTTTGGGACATGGCATCGACCTGATAGATGAGAGCC
Found at i:89881105 original size:98 final size:97
Alignment explanation
Indices: 89880975--89881155 Score: 249
Period size: 98 Copynumber: 1.9 Consensus size: 97
89880965 CTTATTGTGT
* * *
89880975 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTA
1 GTCAGTGTAAGACCTGTTTGAGACATGACATCGACACTGAT-G-TGAGAGCCAGTGCAAGACC-A
89881040 T-T-TGGGACACGGCATCGGCCTCAATATATGAAA
63 TGTCTGGGACACGGCATCGGCCTCAATATATGAAA
** **
89881073 GTCAGTGTAAGACCTGTTTGAGACATGACATCGACTTTGATGTGCTAGCCAGTGCAAGACCATGT
1 GTCAGTGTAAGACCTGTTTGAGACATGACATCGACACTGATGTGAGAGCCAGTGCAAGACCATGT
*
89881138 CTGGGACATGGCATCGGC
66 CTGGGACACGGCATCGGC
89881156 ATCTTACTCT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
95 2 0.03
96 17 0.23
97 17 0.23
98 37 0.51
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (97 bp):
GTCAGTGTAAGACCTGTTTGAGACATGACATCGACACTGATGTGAGAGCCAGTGCAAGACCATGT
CTGGGACACGGCATCGGCCTCAATATATGAAA
Found at i:89883054 original size:19 final size:19
Alignment explanation
Indices: 89883032--89883082 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
89883022 GACACGAGCG
89883032 TGTCCTGGGCACACGGGCA
1 TGTCCTGGGCACACGGGCA
*
89883051 TGTCCTGGGCACACGGGCG
1 TGTCCTGGGCACACGGGCA
89883070 TGTCCTGGGCACA
1 TGTCCTGGGCACA
89883083 TGGGAGTGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (19 bp):
TGTCCTGGGCACACGGGCA
Found at i:89883091 original size:19 final size:19
Alignment explanation
Indices: 89883031--89883093 Score: 92
Period size: 19 Copynumber: 3.3 Consensus size: 19
89883021 GGACACGAGC
89883031 GTGTCCTGGGCACACGGGCA
1 GTGTCCTGGGCACACGGG-A
*
89883051 -TGTCCTGGGCACACGGGC
1 GTGTCCTGGGCACACGGGA
*
89883069 GTGTCCTGGGCACATGGGA
1 GTGTCCTGGGCACACGGGA
89883088 GTGTCC
1 GTGTCC
89883094 CTGTGTCCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 39 1.00
ACGTcount: A:0.13, C:0.29, G:0.40, T:0.19
Consensus pattern (19 bp):
GTGTCCTGGGCACACGGGA
Found at i:89883155 original size:20 final size:20
Alignment explanation
Indices: 89883130--89883182 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
89883120 GTGTCATGGA
89883130 AAAATTTTCTAAGCTTTCCC
1 AAAATTTTCTAAGCTTTCCC
89883150 AAAATTTTCTAAGCTTTCCC
1 AAAATTTTCTAAGCTTTCCC
89883170 AAAATTTTCTAAG
1 AAAATTTTCTAAG
89883183 GCTCTCGGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.34, C:0.21, G:0.06, T:0.40
Consensus pattern (20 bp):
AAAATTTTCTAAGCTTTCCC
Found at i:89884977 original size:46 final size:46
Alignment explanation
Indices: 89884927--89885051 Score: 139
Period size: 46 Copynumber: 2.7 Consensus size: 46
89884917 CATCTCGTAA
* * * *
89884927 CCGATGTATGTCCTAGACAAGTCTTACATTGGCT-TACAT-CTCGAGG
1 CCGATGTATGTCCCAGACATGTCTTACACTAGCTCT-CATACT-GAGG
* *
89884973 CCGATGCT-TGACCCAGACATGTCTTACACTAGCTCTCATACTGTGG
1 CCGATG-TATGTCCCAGACATGTCTTACACTAGCTCTCATACTGAGG
*
89885019 CCGATGCATGTCCCAGACATGTCTTACACTAGC
1 CCGATGTATGTCCCAGACATGTCTTACACTAGC
89885052 ACACAAATAA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
46 63 0.94
47 4 0.06
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CCGATGTATGTCCCAGACATGTCTTACACTAGCTCTCATACTGAGG
Found at i:89892576 original size:46 final size:44
Alignment explanation
Indices: 89892479--89892590 Score: 136
Period size: 46 Copynumber: 2.5 Consensus size: 44
89892469 AGGCCGGCGC
* *
89892479 CATGTCCTAGACATGGTCTTACACTGACACATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAGCCAATG
* * *
89892524 CATGTCCCAGACATGTCTTACACTAGCTCTCATACT-GTGGCCAATG
1 CATGTCCCAGACATGTCTTACACT-G-ACACAT-CTCGTAGCCAATG
89892570 CATGTCCCAGACATGTCTTAC
1 CATGTCCCAGACATGTCTTAC
89892591 TGTAACACCC
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 10 0.17
45 14 0.24
46 33 0.56
47 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGTAGCCAATG
Found at i:89894300 original size:38 final size:38
Alignment explanation
Indices: 89894252--89894407 Score: 141
Period size: 38 Copynumber: 3.9 Consensus size: 38
89894242 TCAAATTAAT
* *
89894252 ATGTATAACCGTGGCATATCCACTTAGCACCATGTTAC
1 ATGTTTAACCGTGGCATATCCACTTAGCACCACGTTAC
* *
89894290 ATGTTTAACCGTGGTATATCCACTTAGTACCACGTTAATGAATC
1 ATGTTTAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C
* * *
89894334 AATATATGTAATCATGGCATATCCACTTAGCACCACGTTAC
1 -ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTTAC
* * *
89894375 ATGTTTCACTGTGGTATATCCACTTAGCACCAC
1 ATGTTTAACCGTGGCATATCCACTTAGCACCAC
89894408 ATTAATGAAT
Statistics
Matches: 94, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
38 53 0.56
39 2 0.02
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 2 0.02
47 25 0.27
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (38 bp):
ATGTTTAACCGTGGCATATCCACTTAGCACCACGTTAC
Found at i:89894352 original size:85 final size:85
Alignment explanation
Indices: 89894257--89894463 Score: 308
Period size: 85 Copynumber: 2.4 Consensus size: 85
89894247 TTAATATGTA
* *
89894257 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGTACCA
1 TAACCATGGCATATCCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
89894322 CGTTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
* * * *
89894342 TAATCATGGCATATCCACTTAGCACCACGTTACATGTTTCACTGTGGTATATCCACTTAGCACCA
1 TAACCATGGCATATCCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
89894407 CATTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
* * *
89894427 TAACCGTGGCATATCGACTCAGCACCACT-TTACATGT
1 TAACCATGGCATATCCACTTAGCACCA-TGTTACATGT
89894464 ATCAATATGT
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
85 109 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (85 bp):
TAACCATGGCATATCCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CATTAATGAATCAATATATG
Found at i:89894477 original size:48 final size:48
Alignment explanation
Indices: 89894385--89894508 Score: 178
Period size: 48 Copynumber: 2.6 Consensus size: 48
89894375 ATGTTTCACT
89894385 GTGGTATATCCACTTAGCACCACATTA-ATGAATCAATATATGTAACC
1 GTGGTATATCCACTTAGCACCACATTACATGAATCAATATATGTAACC
* * * * * * *
89894432 GTGGCATATCGACTCAGCACCACTTTACATGTATCAATATGTGTAATC
1 GTGGTATATCCACTTAGCACCACATTACATGAATCAATATATGTAACC
89894480 GTGGTATATCCACTTAGCACCACATTACA
1 GTGGTATATCCACTTAGCACCACATTACA
89894509 CATATAACCG
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
47 23 0.35
48 42 0.65
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (48 bp):
GTGGTATATCCACTTAGCACCACATTACATGAATCAATATATGTAACC
Found at i:89894489 original size:133 final size:132
Alignment explanation
Indices: 89894295--89894543 Score: 345
Period size: 133 Copynumber: 1.9 Consensus size: 132
89894285 GTTACATGTT
* * *
89894295 TAACCGTGGTATATCCACTTAGTACCACGTTAATGAATCAATATATGTAATCATGGCATATCCAC
1 TAACCGTGGCATATCCACTCAGCACCACGTTAATGAATCAATATATGTAATCATGGCATATCCAC
* ** * * *
89894360 TTAGCACCACGTTACATGTTTCACTGTGGTATATCCACTTAGCACCACATTAATGAATCAATATA
66 TTAGCACCACATTACACATATAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATA
89894425 TG
131 TG
* * * * * *
89894427 TAACCGTGGCATATCGACTCAGCACCACTTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTCAGCACCACGTTA-ATGAATCAATATATGTAATCATGGCATATCCA
*
89894492 CTTAGCACCACATTACACATATAACCGTGGTATATCCACTTATCACCACATT
65 CTTAGCACCACATTACACATATAACCGTGGTATATCCACTTAGCACCACATT
89894544 TTTTCATTCC
Statistics
Matches: 100, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
132 27 0.27
133 73 0.73
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (132 bp):
TAACCGTGGCATATCCACTCAGCACCACGTTAATGAATCAATATATGTAATCATGGCATATCCAC
TTAGCACCACATTACACATATAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATA
TG
Found at i:89898254 original size:40 final size:40
Alignment explanation
Indices: 89898205--89898420 Score: 301
Period size: 40 Copynumber: 5.4 Consensus size: 40
89898195 GATGATAACT
* *
89898205 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
89898245 GGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
89898285 GGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
89898325 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
89898365 GGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
89898405 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
89898421 TACTTGGCTT
Statistics
Matches: 158, Mismatches: 17, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 15 0.09
40 143 0.91
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:89903609 original size:42 final size:47
Alignment explanation
Indices: 89903562--89903735 Score: 160
Period size: 48 Copynumber: 3.8 Consensus size: 47
89903552 TATGTGTTAT
* * *
89903562 CATGTAAGACCATATCTGGGATATGGCGTT-G-AT-A-T-GAGATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTAGCATCAGTGGAGATCC
* * * *
89903604 CATGTATGATCATGTTTGGGACATGGCATTAGCATCGAGTGGTGATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTAGCATC-AGTGGAGATCC
* * *
89903652 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGTGGTGATCA
1 CATGTAAGACCATGTCTGGGACATGGCATTAGCATC-AGTGGAGATCC
* * * * *
89903700 CATGTAAGACCATATTTAGGATATGGCATTGGCATC
1 CATGTAAGACCATGTCTGGGACATGGCATTAGCATC
89903736 TTATTATGTG
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 24 0.22
43 1 0.01
44 2 0.02
46 1 0.01
47 1 0.01
48 81 0.74
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (47 bp):
CATGTAAGACCATGTCTGGGACATGGCATTAGCATCAGTGGAGATCC
Found at i:89903653 original size:48 final size:48
Alignment explanation
Indices: 89903599--89903735 Score: 202
Period size: 48 Copynumber: 2.9 Consensus size: 48
89903589 GTTGATATGA
* * *
89903599 GATCCCATGTATGATCATGTTTGGGACATGGCATTAGCATCGAGTGGT
1 GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGAGTGGT
*
89903647 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGTGGT
1 GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGAGTGGT
* * * *
89903695 GATCACATGTAAGACCATATTTAGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATC
89903736 TTATTATGTG
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGAGTGGT
Found at i:89918332 original size:16 final size:17
Alignment explanation
Indices: 89918313--89918350 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
89918303 TTTTTAAATT
*
89918313 TTTTATAAT-TTATTTA
1 TTTTATAATATTATATA
89918329 TTTTA-AATATTATATA
1 TTTTATAATATTATATA
89918345 TTTTAT
1 TTTTAT
89918351 TTATTTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTATAATATTATATA
Found at i:89918344 original size:25 final size:25
Alignment explanation
Indices: 89918304--89918357 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
89918294 TTTTAATCTT
* *
89918304 TTTTAAATTTTTTATAATTTATTTA
1 TTTTAAATATTATATAATTTATTTA
*
89918329 TTTTAAATATTATATATTTTATTTA
1 TTTTAAATATTATATAATTTATTTA
89918354 TTTT
1 TTTT
89918358 TACTATAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTTAAATATTATATAATTTATTTA
Found at i:89918425 original size:7 final size:7
Alignment explanation
Indices: 89918388--89918549 Score: 69
Period size: 7 Copynumber: 21.1 Consensus size: 7
89918378 AATGTAGAAA
89918388 TTATTAT
1 TTATTAT
89918395 ATATATTAT
1 -T-TATTAT
89918404 TT-TTAT
1 TTATTAT
89918410 TT-TTAT
1 TTATTAT
89918416 ATTATTTAT
1 -TTA-TTAT
89918425 TATATTAT
1 T-TATTAT
*
89918433 TTACATTTT
1 TT--ATTAT
89918442 GTTATATAT
1 -TTAT-TAT
*
89918451 TT-TGAT
1 TTATTAT
*
89918457 TTATACATT
1 TTAT-TA-T
89918466 TTATTAT
1 TTATTAT
* *
89918473 ATATCAT
1 TTATTAT
89918480 TTATTAT
1 TTATTAT
89918487 ATATATTAT
1 -T-TATTAT
*
89918496 TCATTAT
1 TTATTAT
*
89918503 ACTTTTTATT
1 --TTATTA-T
89918513 TTATTAT
1 TTATTAT
*
89918520 ATATTAT
1 TTATTAT
*
89918527 ATAATTAT
1 -TTATTAT
89918535 TTATTAT
1 TTATTAT
89918542 TTATTAT
1 TTATTAT
89918549 T
1 T
89918550 ATGTATAATT
Statistics
Matches: 119, Mismatches: 17, Indels: 37
0.69 0.10 0.21
Matches are distributed among these distances:
6 14 0.12
7 43 0.36
8 26 0.22
9 33 0.28
10 3 0.03
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (7 bp):
TTATTAT
Found at i:89918460 original size:14 final size:12
Alignment explanation
Indices: 89918388--89918562 Score: 76
Period size: 12 Copynumber: 14.2 Consensus size: 12
89918378 AATGTAGAAA
*
89918388 TTATTATATATA
1 TTATTATATATT
* *
89918400 TTATTTTTATTTT
1 TTA-TTATATATT
*
89918413 TATATTATTTATT
1 T-TATTATATATT
* *
89918426 ATATTATTTACATT
1 TTATTA--TATATT
*
89918440 TTGTTATATATT
1 TTATTATATATT
*
89918452 TTGATTTATACATT
1 TT-A-TTATATATT
89918466 TTATTATATATCAT
1 TTATTATATAT--T
*
89918480 TTATTATATATA
1 TTATTATATATT
*
89918492 TTATTCAT-TATA
1 TTATT-ATATATT
*
89918504 CT-TT-T-TATT
1 TTATTATATATT
89918513 TTATTATATATT
1 TTATTATATATT
* *
89918525 ATATAAT-TA-T
1 TTATTATATATT
*
89918535 TTATTATTTATT
1 TTATTATATATT
89918547 ATTATGTATA-ATT
1 -TTAT-TATATATT
89918560 TTA
1 TTA
89918563 AAAATTCATA
Statistics
Matches: 123, Mismatches: 24, Indels: 32
0.69 0.13 0.18
Matches are distributed among these distances:
9 5 0.04
10 8 0.07
11 7 0.06
12 45 0.37
13 23 0.19
14 35 0.28
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (12 bp):
TTATTATATATT
Found at i:89918486 original size:26 final size:25
Alignment explanation
Indices: 89918388--89918523 Score: 72
Period size: 26 Copynumber: 5.4 Consensus size: 25
89918378 AATGTAGAAA
* **
89918388 TTATTATATATA-TTATTTTTATTTT
1 TTATTATATATATTTA-TTATACATT
*
89918413 TATATTATTTATTATATTATT-TACATT
1 T-TATTATATA-TAT-TTATTATACATT
*
89918440 TTGTTATATAT-TTTGATTTATACATT
1 TTATTATATATATTT-A-TTATACATT
* *
89918466 TTATTATATATCATTTATTATATATA
1 TTATTATATAT-ATTTATTATACATT
*
89918492 TTATTCAT-TATACTT-TT-T--ATT
1 TTATT-ATATATATTTATTATACATT
89918513 TTATTATATAT
1 TTATTATATAT
89918524 TATATAATTA
Statistics
Matches: 90, Mismatches: 10, Indels: 26
0.71 0.08 0.21
Matches are distributed among these distances:
20 2 0.02
21 10 0.11
23 3 0.03
24 4 0.04
25 7 0.08
26 46 0.51
27 10 0.11
28 5 0.06
29 3 0.03
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (25 bp):
TTATTATATATATTTATTATACATT
Found at i:89918491 original size:16 final size:16
Alignment explanation
Indices: 89918470--89918503 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
89918460 TACATTTTAT
*
89918470 TATATATCATTTATTA
1 TATATATCATTCATTA
*
89918486 TATATATTATTCATTA
1 TATATATCATTCATTA
89918502 TA
1 TA
89918504 CTTTTTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (16 bp):
TATATATCATTCATTA
Found at i:89918503 original size:42 final size:40
Alignment explanation
Indices: 89918444--89918541 Score: 110
Period size: 42 Copynumber: 2.4 Consensus size: 40
89918434 TACATTTTGT
* *
89918444 TATATATT-TTGATTTATACATTTTATTATATATCATTTATTA
1 TATATATTATTCA-TTATACATTTTATT-T-TATCATATATTA
* *
89918486 TATATATTATTCATTATACTTTTTATTTTATTATATATTA
1 TATATATTATTCATTATACATTTTATTTTATCATATATTA
*
89918526 TATA-ATTATTTATTAT
1 TATATATTATTCATTAT
89918542 TTATTATTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
39 11 0.22
40 14 0.28
41 1 0.02
42 21 0.42
43 3 0.06
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (40 bp):
TATATATTATTCATTATACATTTTATTTTATCATATATTA
Found at i:89922895 original size:29 final size:29
Alignment explanation
Indices: 89922869--89922941 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
89922859 TTTTCAGCTT
* *
89922869 GCACACATAGTGTCATATTTTTCCAGCAC
1 GCACACTTAGTGCCATATTTTTCCAGCAC
*
89922898 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATTTTTCCAGCAC
89922927 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
89922942 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATTTTTCCAGCAC
Found at i:89924276 original size:17 final size:18
Alignment explanation
Indices: 89924248--89924281 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
89924238 TTTTTTTTTC
89924248 TTTTCTATTTCTTTATTA
1 TTTTCTATTTCTTTATTA
89924266 TTTTC-ATTTCTTTATT
1 TTTTCTATTTCTTTATT
89924282 CTTTCTACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTCTATTTCTTTATTA
Found at i:89925994 original size:12 final size:12
Alignment explanation
Indices: 89925979--89926014 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
89925969 AGAAGAAATA
89925979 CAAGAACAATTG
1 CAAGAACAATTG
89925991 CAAGAACAATTG
1 CAAGAACAATTG
*
89926003 CAGGAACAATTG
1 CAAGAACAATTG
89926015 GCAAAAGTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (12 bp):
CAAGAACAATTG
Found at i:89932522 original size:71 final size:71
Alignment explanation
Indices: 89932438--89932601 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
89932428 CGATTTGTCT
89932438 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
89932503 CTTTCA
66 CTTTCA
89932509 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
89932574 CTTTCA
66 CTTTCA
89932580 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
89932602 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:89932639 original size:71 final size:70
Alignment explanation
Indices: 89932438--89932635 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
89932428 CGATTTGTCT
* * * *
89932438 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
89932503 CTTTCA
65 CTTTCA
* * * *
89932509 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
89932574 CTTTCA
65 CTTTCA
* *
89932580 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
89932636 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:89936857 original size:45 final size:45
Alignment explanation
Indices: 89936682--89937045 Score: 268
Period size: 45 Copynumber: 8.2 Consensus size: 45
89936672 TCTTCTAGAA
* * *
89936682 AGCAGATTTGGTGTCTTTGTATT-GACAGG-GAGCAGATCGAAGA-
1 AGCAGATTTGGCGTCTCTGTATTAGA-TGGAGAGCAGATCGAAGAT
* *
89936725 AGCAGATTTGGAGTCTCTGTATTAGACGGAGAGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTAGATGGAGAGCAGATCGAAGAT
* * * * * *
89936770 AGCAGATCTGACAT-TCGTGTGTTTACATCGA-AG-AGATCGAAGAT
1 AGCAGATTTGGCGTCTC-TGT-ATTAGATGGAGAGCAGATCGAAGAT
* *
89936814 -GACAGATTTGGCGTCTCTATATTAGATGGAGAGCAGGTCGAAGAT
1 AG-CAGATTTGGCGTCTCTGTATTAGATGGAGAGCAGATCGAAGAT
* * * * * *
89936859 AGCAGATCTGACAT-TCGTGTGTTTACATTGA-AGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTC-TGT-ATTAGATGGAGAGCAGATCGAAGAT
* * * *
89936904 AGTAGATTTGGCGTCTCTGTATTAGACGGAGAGTAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTAGATGGAGAGCAGATCGAAGAT
* * * * * *
89936949 AGCAGATCTGACAT-TCGTGTGTTTACATCGA-AGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTC-TGT-ATTAGATGGAGAGCAGATCGAAGAT
*
89936994 -GACAGATTTGGCGTCTCTGTATTAGACAGG-GAGCAGATCGAAGAT
1 AG-CAGATTTGGCGTCTCTGTATTAGA-TGGAGAGCAGATCGAAGAT
*
89937039 AACAGAT
1 AGCAGAT
89937046 CTGACATTCA
Statistics
Matches: 245, Mismatches: 55, Indels: 40
0.72 0.16 0.12
Matches are distributed among these distances:
43 31 0.13
44 57 0.23
45 133 0.54
46 24 0.10
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (45 bp):
AGCAGATTTGGCGTCTCTGTATTAGATGGAGAGCAGATCGAAGAT
Found at i:89936948 original size:90 final size:90
Alignment explanation
Indices: 89936712--89937101 Score: 617
Period size: 90 Copynumber: 4.4 Consensus size: 90
89936702 ATTGACAGGG
* *
89936712 AGCAGATCGAAGAAG-CAGATTTGGAGTCTCTGTATTAGACGGAGAGCAGATCGAAGATAGCAGA
1 AGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAGATAGCAGA
89936776 TCTGACATTCGTGTGTTTACATCGA
66 TCTGACATTCGTGTGTTTACATCGA
* * *
89936801 AG-AGATCGAAGATGACAGATTTGGCGTCTCTATATTAGATGGAGAGCAGGTCGAAGATAGCAGA
1 AGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAGATAGCAGA
*
89936865 TCTGACATTCGTGTGTTTACATTGA
66 TCTGACATTCGTGTGTTTACATCGA
* * *
89936890 AGCAGATCGAAGAT-AGTAGATTTGGCGTCTCTGTATTAGACGGAGAGTAGATCAAAGATAGCAG
1 AGCAGATCGAAGATGA-CAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAGATAGCAG
89936954 ATCTGACATTCGTGTGTTTACATCGA
65 ATCTGACATTCGTGTGTTTACATCGA
*
89936980 AGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGG-GAGCAGATCGAAGATAACAG
1 AGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGAC-GGAGAGCAGATCGAAGATAGCAG
* *
89937044 ATCTGACATTCATGTGTTTACATCAA
65 ATCTGACATTCGTGTGTTTACATCGA
*
89937070 AGAAGATCGAAGATGACAGATTTGGCGTCTCT
1 AGCAGATCGAAGATGACAGATTTGGCGTCTCT
89937102 ATAGCAGATT
Statistics
Matches: 276, Mismatches: 20, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
88 11 0.04
89 74 0.27
90 188 0.68
91 3 0.01
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (90 bp):
AGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAGATAGCAGA
TCTGACATTCGTGTGTTTACATCGA
Found at i:89937077 original size:45 final size:44
Alignment explanation
Indices: 89936756--89937090 Score: 196
Period size: 45 Copynumber: 7.5 Consensus size: 44
89936746 TTAGACGGAG
* *
89936756 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAACAGATCTGACATTC-TGTGTTTACATCAA
* * * * * * * * *
89936801 AG-AGATCGAAGATGACAGATTTGGCGTCTCTAT-ATTAGATGGAG
1 AGCAGATCGAAGATAACAGATCTGACAT-TCTGTGTTTACAT-CAA
* * **
89936845 AGCAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATTGA
1 AGCAGATCGAAGATAACAGATCTGACATTC-TGTGTTTACATCAA
** * * * * * *
89936890 AGCAGATCGAAGATAGTAGATTTGGCGTCTCTGT-ATTAGA-CGGAG
1 AGCAGATCGAAGATAACAGATCTGACAT-TCTGTGTTTACATC--AA
* * * *
89936935 AGTAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAACAGATCTGACATTC-TGTGTTTACATCAA
* * * * * * *
89936980 AGCAGATCGAAGATGACAGATTTGGCGTCTCTGT-ATTAGA-CAGGG
1 AGCAGATCGAAGATAACAGATCTGACAT-TCTGTGTTTACATCA--A
89937025 AGCAGATCGAAGATAACAGATCTGACATTCATGTGTTTACATCAA
1 AGCAGATCGAAGATAACAGATCTGACATTC-TGTGTTTACATCAA
* *
89937070 AGAAGATCGAAGATGACAGAT
1 AGCAGATCGAAGATAACAGAT
89937091 TTGGCGTCTC
Statistics
Matches: 210, Mismatches: 63, Indels: 34
0.68 0.21 0.11
Matches are distributed among these distances:
43 6 0.03
44 38 0.18
45 146 0.70
46 17 0.08
47 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (44 bp):
AGCAGATCGAAGATAACAGATCTGACATTCTGTGTTTACATCAA
Found at i:89937145 original size:65 final size:65
Alignment explanation
Indices: 89937041--89937166 Score: 198
Period size: 65 Copynumber: 1.9 Consensus size: 65
89937031 TCGAAGATAA
* *
89937041 CAGATCTGACATTCATGTGTTTACATCAAAGAAGATCGAAGATGACAGATTTGGCGTCTCTATAG
1 CAGATCTGACATTCATGTGTTTACATCAAAGAAGATCGAAGATGACAAATTTGGCATCTCTATAG
* * * *
89937106 CAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
1 CAGATCTGACATTCATGTGTTTACATCAAAGAAGATCGAAGATGACAAATTTGGCATCTCT
89937167 GAATTAGACG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (65 bp):
CAGATCTGACATTCATGTGTTTACATCAAAGAAGATCGAAGATGACAAATTTGGCATCTCTATAG
Found at i:89937186 original size:45 final size:43
Alignment explanation
Indices: 89937135--89937436 Score: 153
Period size: 45 Copynumber: 6.7 Consensus size: 43
89937125 TTTACATCGA
*
89937135 AGCAGATCGAAGATGACAAATTTGGCATCTCTGAATTAGACGGGG
1 AGCAGATCGAAGATGACAGATTTGGCATCTCTGAATTAGAC--GG
* * ** * * ** * *
89937180 AGCAGATCGAAGAT-AGTAGATCTAACATTTATGTGTTTACATCGA
1 AGCAGATCGAAGATGA-CAGATTTGGCATCTCTG-AATTAGA-CGG
* * *
89937225 AGCAGATCGAAGATGATAGATTTGGCGTTTCTGAATTAGACGAGG
1 AGCAGATCGAAGATGACAGATTTGGCATCTCTGAATTAGAC--GG
* * ** * *
89937270 AGCAGATCGAAGAT-AGCAGATCTGACAT-TCGTGTGTTTACATCGA
1 AGCAGATCGAAGATGA-CAGATTTGGCATCTC-TG-AATTAGA-CGG
* *
89937315 AGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGG
1 AGCAGATCGAAGATGACAGATTTGGCATCTCTGAATTAGAC--GG
* * * ** * **
89937360 AGCAGATCGAAGATAACAGATCTGACAT-TCGTGTGTTTACATCAA
1 AGCAGATCGAAGATGACAGATTTGGCATCTC-TG-AATTAGA-CGG
*
89937405 AGAAGATCGAAGATGACAGATTTGGCATCTCT
1 AGCAGATCGAAGATGACAGATTTGGCATCTCT
89937437 ATAGCAGATT
Statistics
Matches: 191, Mismatches: 48, Indels: 36
0.69 0.17 0.13
Matches are distributed among these distances:
43 2 0.01
44 14 0.07
45 154 0.81
46 18 0.09
47 3 0.02
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (43 bp):
AGCAGATCGAAGATGACAGATTTGGCATCTCTGAATTAGACGG
Found at i:89937228 original size:90 final size:90
Alignment explanation
Indices: 89937102--89937436 Score: 526
Period size: 90 Copynumber: 3.7 Consensus size: 90
89937092 TGGCGTCTCT
* *
89937102 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCT
89937167 GAATTAGACGGGGAGCAGATCGAAG
66 GAATTAGACGGGGAGCAGATCGAAG
* * ** * * *
89937192 ATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGATCGAAGATGATAGATTTGGCGTTTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCT
*
89937257 GAATTAGACGAGGAGCAGATCGAAG
66 GAATTAGACGGGGAGCAGATCGAAG
*
89937282 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCT
* *
89937347 GTATTAGACAGGGAGCAGATCGAAG
66 GAATTAGACGGGGAGCAGATCGAAG
* * *
89937372 ATAACAGATCTGACATTCGTGTGTTTACATCAAAGAAGATCGAAGATGACAGATTTGGCATCTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCT
89937437 ATAGCAGATT
Statistics
Matches: 222, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 222 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (90 bp):
ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCT
GAATTAGACGGGGAGCAGATCGAAG
Found at i:89937232 original size:155 final size:155
Alignment explanation
Indices: 89936947--89937587 Score: 703
Period size: 155 Copynumber: 4.0 Consensus size: 155
89936937 TAGATCAAAG
* * *
89936947 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT
1 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
* *
89937012 GTATTAGACAGGGAGCAGATCGAAGATAACAGATCTGACATTCATGTGTTTACATCAAAGAAGAT
66 GAATTAGACAGGGAGCAGATCGAAGATAACAGATCTAACATTCATGTGTTTACATCAAAGAAGAT
89937077 CGAAGATGACAGATTTGGCGTCTCT
131 CGAAGATGACAGATTTGGCGTCTCT
89937102 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
1 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
* ** * * *
89937167 GAATTAGACGGGGAGCAGATCGAAGATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGAT
66 GAATTAGACAGGGAGCAGATCGAAGATAACAGATCTAACATTCATGTGTTTACATCAAAGAAGAT
* *
89937232 CGAAGATGATAGATTTGGCGTTTCT
131 CGAAGATGACAGATTTGGCGTCTCT
* * * * ** * *
89937257 GAATTAG-ACGA--GGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCA
1 --A-TAGCA-GATTTGA-CA-TTC---G-T-G-TG-T-TTACA-TCG-AAG--CAGATC---G--
* * * *
89937319 GATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAACAGATCTG
43 -----AAGATGACAAATTTGGCATCTCTGAATTAGACAGGGAGCAGATCGAAGATAACAGATCTA
* *
89937384 ACATTCGTGTGTTTACATCAAAGAAGATCGAAGATGACAGATTTGGCATCTCT
103 ACATTCATGTGTTTACATCAAAGAAGATCGAAGATGACAGATTTGGCGTCTCT
89937437 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
1 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
* ** * * *
89937502 GAATTAGACGGGGAGCAGATCGAAGATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGAT
66 GAATTAGACAGGGAGCAGATCGAAGATAACAGATCTAACATTCATGTGTTTACATCAAAGAAGAT
*
89937567 CGAAGATGATAGATTTGGCGT
131 CGAAGATGACAGATTTGGCGT
89937588 TTCTGAATTA
Statistics
Matches: 399, Mismatches: 56, Indels: 62
0.77 0.11 0.12
Matches are distributed among these distances:
155 238 0.60
156 2 0.01
157 4 0.01
158 7 0.02
161 1 0.00
162 2 0.01
163 1 0.00
164 1 0.00
165 5 0.01
166 4 0.01
167 4 0.01
168 4 0.01
169 4 0.01
170 5 0.01
171 1 0.00
172 1 0.00
173 2 0.01
174 1 0.00
177 7 0.02
178 4 0.01
179 2 0.01
180 99 0.25
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (155 bp):
ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
GAATTAGACAGGGAGCAGATCGAAGATAACAGATCTAACATTCATGTGTTTACATCAAAGAAGAT
CGAAGATGACAGATTTGGCGTCTCT
Found at i:89937292 original size:245 final size:245
Alignment explanation
Indices: 89936857--89937346 Score: 768
Period size: 245 Copynumber: 2.0 Consensus size: 245
89936847 CAGGTCGAAG
* * * *
89936857 ATAGCAGATCTGACATTCGTGTGTTTACATTGAAGCAGATCGAAGATAGTAGATTTGGCGTCTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATAGCAAATTTGGCATCTCT
* * * *
89936922 GTATTAGACGGAGAGTAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGAT
66 GAATTAGACGGAGAGCAGATCAAAGATAGCAGATCTAACATTCATGTGTTTACATCGAAGCAGAT
*
89936987 CGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAACAGATCTGACA
131 CGAAGATGACAGATTTGGCGTCTCTGAATTAGACAGGGAGCAGATCGAAGATAACAGATCTGACA
89937052 TTCATGTGTTTACATCAAAGAAGATCGAAGATGACAGATTTGGCGTCTCT
196 TTCATGTGTTTACATCAAAGAAGATCGAAGATGACAGATTTGGCGTCTCT
*
89937102 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGAT-GACAAATTTGGCATCTC
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATAG-CAAATTTGGCATCTC
* * * *
89937166 TGAATTAGACGGGGAGCAGATCGAAGATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGA
65 TGAATTAGACGGAGAGCAGATCAAAGATAGCAGATCTAACATTCATGTGTTTACATCGAAGCAGA
* * *
89937231 TCGAAGATGATAGATTTGGCGTTTCTGAATTAGAC-GAGGAGCAGATCGAAGATAGCAGATCTGA
130 TCGAAGATGACAGATTTGGCGTCTCTGAATTAGACAG-GGAGCAGATCGAAGATAACAGATCTGA
* * *
89937295 CATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT
194 CATTCATGTGTTTACATCAAAGAAGATCGAAGATGACAGATTTGGCGTCTCT
89937347 GTATTAGACA
Statistics
Matches: 223, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
244 2 0.01
245 221 0.99
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (245 bp):
ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATAGCAAATTTGGCATCTCT
GAATTAGACGGAGAGCAGATCAAAGATAGCAGATCTAACATTCATGTGTTTACATCGAAGCAGAT
CGAAGATGACAGATTTGGCGTCTCTGAATTAGACAGGGAGCAGATCGAAGATAACAGATCTGACA
TTCATGTGTTTACATCAAAGAAGATCGAAGATGACAGATTTGGCGTCTCT
Found at i:89937413 original size:335 final size:335
Alignment explanation
Indices: 89936768--89937741 Score: 1695
Period size: 335 Copynumber: 2.9 Consensus size: 335
89936758 CAGATCGAAG
* * *
89936768 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAG-AGATCGAAGATGACAGATTTGGCGTCTCT
1 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
* * * * * ** *
89936832 -ATATTAGATGGAGAGCAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATTGAAGCAGA
66 GA-ATTAGACGGGGAGCAGATCGAAGATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGA
* * * *
89936896 TCGAAGAT-AGTAGATTTGGCGTCTCTGTATTAGACG-GAGAGTAGATCAAAGATAGCAGATCTG
130 TCGAAGATGA-TAGATTTGGCGTTTCTGAATTAGACGAG-GAGCAGATCGAAGATAGCAGATCTG
89936959 ACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGG
193 ACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGG
*
89937024 GAGCAGATCGAAGATAACAGATCTGACATTCATGTGTTTACATCAAAGAAGATCGAAGATGACAG
258 GAGCAGATCGAAGATAACAGATCTGACATTCGTGTGTTTACATCAAAGAAGATCGAAGATGACAG
*
89937089 ATTTGGCGTCTCT
323 ATTTGGCATCTCT
89937102 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
1 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
89937167 GAATTAGACGGGGAGCAGATCGAAGATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGAT
66 GAATTAGACGGGGAGCAGATCGAAGATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGAT
89937232 CGAAGATGATAGATTTGGCGTTTCTGAATTAGACGAGGAGCAGATCGAAGATAGCAGATCTGACA
131 CGAAGATGATAGATTTGGCGTTTCTGAATTAGACGAGGAGCAGATCGAAGATAGCAGATCTGACA
89937297 TTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAG
196 TTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAG
89937362 CAGATCGAAGATAACAGATCTGACATTCGTGTGTTTACATCAAAGAAGATCGAAGATGACAGATT
261 CAGATCGAAGATAACAGATCTGACATTCGTGTGTTTACATCAAAGAAGATCGAAGATGACAGATT
89937427 TGGCATCTCT
326 TGGCATCTCT
89937437 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
1 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
89937502 GAATTAGACGGGGAGCAGATCGAAGATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGAT
66 GAATTAGACGGGGAGCAGATCGAAGATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGAT
89937567 CGAAGATGATAGATTTGGCGTTTCTGAATTAGACGAGGAGCAGATCGAAGATAGCAGATCTGACA
131 CGAAGATGATAGATTTGGCGTTTCTGAATTAGACGAGGAGCAGATCGAAGATAGCAGATCTGACA
* *
89937632 TTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAG
196 TTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAG
* * *
89937697 CAGATCAAAGATAGCAGATCTTACATTCGTGTGTTTACATCAAAG
261 CAGATCGAAGATAACAGATCTGACATTCGTGTGTTTACATCAAAG
89937742 CAGACAGATT
Statistics
Matches: 614, Mismatches: 22, Indels: 7
0.95 0.03 0.01
Matches are distributed among these distances:
334 34 0.06
335 577 0.94
336 3 0.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (335 bp):
ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
GAATTAGACGGGGAGCAGATCGAAGATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGAT
CGAAGATGATAGATTTGGCGTTTCTGAATTAGACGAGGAGCAGATCGAAGATAGCAGATCTGACA
TTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAG
CAGATCGAAGATAACAGATCTGACATTCGTGTGTTTACATCAAAGAAGATCGAAGATGACAGATT
TGGCATCTCT
Found at i:89937458 original size:65 final size:65
Alignment explanation
Indices: 89937376--89937501 Score: 216
Period size: 65 Copynumber: 1.9 Consensus size: 65
89937366 TCGAAGATAA
*
89937376 CAGATCTGACATTCGTGTGTTTACATCAAAGAAGATCGAAGATGACAGATTTGGCATCTCTATAG
1 CAGATCTGACATTCGTGTGTTTACATCAAAGAAGATCGAAGATGACAAATTTGGCATCTCTATAG
* * *
89937441 CAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
1 CAGATCTGACATTCGTGTGTTTACATCAAAGAAGATCGAAGATGACAAATTTGGCATCTCT
89937502 GAATTAGACG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (65 bp):
CAGATCTGACATTCGTGTGTTTACATCAAAGAAGATCGAAGATGACAAATTTGGCATCTCTATAG
Found at i:89937462 original size:245 final size:245
Alignment explanation
Indices: 89937211--89937681 Score: 791
Period size: 245 Copynumber: 1.9 Consensus size: 245
89937201 CTAACATTTA
* * * *
89937211 TGTGTTTACATCGAAGCAGATCGAAGATGATAGATTTGGCGTTTCTGAATTAGACGAGGAGCAGA
1 TGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCTGAATTAGACGAGGAGCAGA
* *
89937276 TCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGC
66 TCGAAGATAGCAGATCTAACATTCATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGC
*
89937341 GTCTCTGTATTAGAC-AGGGAGCAGATCGAAGATAACAGATCTGACATTCGTGTGTTTACATCAA
131 GTCTCTGAATTAGACGA-GGAGCAGATCGAAGATAACAGATCTGACATTCGTGTGTTTACATCAA
89937405 AGAAGATCGAAGATGACAGATTTGGCATCTCTATAGCAGATTTGACATTCG
195 AGAAGATCGAAGATGACAGATTTGGCATCTCTATAGCAGATTTGACATTCG
*
89937456 TGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCTGAATTAGACGGGGAGCAGA
1 TGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCTGAATTAGACGAGGAGCAGA
* * *
89937521 TCGAAGATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGATCGAAGATGATAGATTTGGC
66 TCGAAGATAGCAGATCTAACATTCATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGC
* * *
89937586 GTTTCTGAATTAGACGAGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAA
131 GTCTCTGAATTAGACGAGGAGCAGATCGAAGATAACAGATCTGACATTCGTGTGTTTACATCAAA
*
89937651 GCAGATCGAAGATGACAGATTTGGCATCTCT
196 GAAGATCGAAGATGACAGATTTGGCATCTCT
89937682 GTATTAGACG
Statistics
Matches: 210, Mismatches: 15, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
245 209 1.00
246 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (245 bp):
TGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCTGAATTAGACGAGGAGCAGA
TCGAAGATAGCAGATCTAACATTCATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGC
GTCTCTGAATTAGACGAGGAGCAGATCGAAGATAACAGATCTGACATTCGTGTGTTTACATCAAA
GAAGATCGAAGATGACAGATTTGGCATCTCTATAGCAGATTTGACATTCG
Found at i:89937563 original size:90 final size:90
Alignment explanation
Indices: 89937437--89937745 Score: 483
Period size: 90 Copynumber: 3.4 Consensus size: 90
89937427 TGGCATCTCT
* * *
89937437 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCATCTCT
1 ATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCT
89937502 GAATTAGACGGGGAGCAGATCGAAG
66 GAATTAGACGGGGAGCAGATCGAAG
* ** * * *
89937527 ATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGATCGAAGATGATAGATTTGGCGTTTCT
1 ATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCT
*
89937592 GAATTAGACGAGGAGCAGATCGAAG
66 GAATTAGACGGGGAGCAGATCGAAG
*
89937617 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCT
1 ATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCT
* *
89937682 GTATTAGACGGGGAGCAGATCAAAG
66 GAATTAGACGGGGAGCAGATCGAAG
* *
89937707 ATAGCAGATCTTACATTCGTGTGTTTACATCAAAGCAGA
1 ATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGA
89937746 CAGATTTGGC
Statistics
Matches: 197, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 197 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (90 bp):
ATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCT
GAATTAGACGGGGAGCAGATCGAAG
Found at i:89937715 original size:45 final size:44
Alignment explanation
Indices: 89937470--89937708 Score: 164
Period size: 45 Copynumber: 5.3 Consensus size: 44
89937460 TTTACATCGA
* *
89937470 AGCAGATCGAAGATGACAAATTTGGCATCTCTGAATTAGACGGGG
1 AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGAC-GGG
* * ** * * * * *
89937515 AGCAGATCGAAGAT-AGTAGATCTAACATTTATGTGTTTACATC-GA
1 AGCAGATCGAAGATGA-CAGATTTGGCATCTCTGT-ATTAGA-CGGG
* * * *
89937560 AGCAGATCGAAGATGATAGATTTGGCGTTTCTGAATTAGACGAGG
1 AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACG-GG
* * * * *
89937605 AGCAGATCGAAGAT-AGCAGATCTGACAT-TCGTGTGTTTACATC-GA
1 AGCAGATCGAAGATGA-CAGATTTGGCATCTC-TGT-ATTAGA-CGGG
89937650 AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGAC-GGG
*
89937695 AGCAGATCAAAGAT
1 AGCAGATCGAAGAT
89937709 AGCAGATCTT
Statistics
Matches: 146, Mismatches: 34, Indels: 28
0.70 0.16 0.13
Matches are distributed among these distances:
43 2 0.01
44 12 0.08
45 118 0.81
46 12 0.08
47 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.26
Consensus pattern (44 bp):
AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGG
Found at i:89937744 original size:45 final size:45
Alignment explanation
Indices: 89937437--89937745 Score: 155
Period size: 45 Copynumber: 6.9 Consensus size: 45
89937427 TGGCATCTCT
89937437 ATAGCAGAT-TTGACATTCGTGTGTTTACATCGAAGCAGATCGAAG
1 ATAGCAGATCTT-ACATTCGTGTGTTTACATCGAAGCAGATCGAAG
* * ** * *
89937482 AT-GACAAAT-TTGGCATCTC-TG-AATTAGA-CGGGGAGCAGATCGAAG
1 ATAG-CAGATCTT-ACAT-TCGTGTGTTTACATC--GAAGCAGATCGAAG
* * **
89937527 ATAGTAGATCTAACATTTATGTGTTTACATCGAAGCAGATCGAAG
1 ATAGCAGATCTTACATTCGTGTGTTTACATCGAAGCAGATCGAAG
* * * ** *
89937572 AT-GATAGAT-TTGGCGTTTC-TG-AATTAGA-CGAGGAGCAGATCGAAG
1 ATAG-CAGATCTT-AC-ATTCGTGTGTTTACATCGA--AGCAGATCGAAG
*
89937617 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAG
1 ATAGCAGATCTTACATTCGTGTGTTTACATCGAAGCAGATCGAAG
* * * * *
89937662 AT-GACAGAT-TTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCAAAG
1 ATAG-CAGATCTT-ACAT-TCGTGTGTTTACATC--GAAGCAGATCGAAG
*
89937707 ATAGCAGATCTTACATTCGTGTGTTTACATCAAAGCAGA
1 ATAGCAGATCTTACATTCGTGTGTTTACATCGAAGCAGA
89937746 CAGATTTGGC
Statistics
Matches: 195, Mismatches: 40, Indels: 58
0.67 0.14 0.20
Matches are distributed among these distances:
43 5 0.03
44 23 0.12
45 137 0.70
46 25 0.13
47 5 0.03
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (45 bp):
ATAGCAGATCTTACATTCGTGTGTTTACATCGAAGCAGATCGAAG
Found at i:89939239 original size:25 final size:25
Alignment explanation
Indices: 89939207--89939260 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
89939197 TTTTAATCCT
*
89939207 TTTTAAATTTTTTATAATTTATTTA
1 TTTTAAATTTTATATAATTTATTTA
89939232 TTTTAAATTTTATATAATTTATTTA
1 TTTTAAATTTTATATAATTTATTTA
89939257 TTTT
1 TTTT
89939261 TACTATAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTTAAATTTTATATAATTTATTTA
Found at i:89939353 original size:29 final size:28
Alignment explanation
Indices: 89939293--89939396 Score: 90
Period size: 29 Copynumber: 3.7 Consensus size: 28
89939283 CGTAGAAATG
**
89939293 ATTATATATATTATTTTTA-TTTTTATATT
1 ATTAT-TATATTATTTACATTTTTTATA-T
89939322 ATTTATTATATTATTTACATTTTTTATAT
1 A-TTATTATATTATTTACATTTTTTATAT
*
89939351 ATTATGAT-TTA--TACATTTTATTATAT
1 ATTATTATATTATTTACATTTT-TTATAT
* * *
89939377 ATCATTTTATTATATACATT
1 ATTATTATATTATTTACATT
89939397 ATTCATTATA
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
25 8 0.13
26 11 0.17
27 6 0.10
28 6 0.10
29 20 0.32
30 12 0.19
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (28 bp):
ATTATTATATTATTTACATTTTTTATAT
Found at i:89939354 original size:20 final size:21
Alignment explanation
Indices: 89939310--89939355 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
89939300 ATATTATTTT
*
89939310 TATT-TTTATATTATTTATTA
1 TATTATTTACATTATTTATTA
*
89939330 TATTATTTACATTTTTTA-TA
1 TATTATTTACATTATTTATTA
89939350 TATTAT
1 TATTAT
89939356 GATTTATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (21 bp):
TATTATTTACATTATTTATTA
Found at i:89939383 original size:23 final size:21
Alignment explanation
Indices: 89939323--89939385 Score: 58
Period size: 25 Copynumber: 2.9 Consensus size: 21
89939313 TTTTATATTA
89939323 TTTATTATAT-TA-TTTACAT
1 TTTATTATATATATTTTACAT
*
89939342 TTTTTATATATTATGATTTATACAT
1 TTTAT-TATA-TAT-ATTT-TACAT
89939367 TTTATTATATATCATTTTA
1 TTTATTATATAT-ATTTTA
89939386 TTATATACAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
19 4 0.11
20 4 0.11
21 1 0.03
22 3 0.09
23 8 0.23
24 6 0.17
25 9 0.26
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTATTATATATATTTTACAT
Found at i:89939385 original size:24 final size:24
Alignment explanation
Indices: 89939337--89939386 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
89939327 TTATATTATT
*
89939337 TACATTTTTTATATATTATGATTTA
1 TACATTTTTTATATATCAT-ATTTA
89939362 TACATTTTATTATATATCAT-TTTA
1 TACATTTT-TTATATATCATATTTA
89939386 T
1 T
89939387 TATATACATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 5 0.22
25 8 0.35
26 10 0.43
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (24 bp):
TACATTTTTTATATATCATATTTA
Found at i:89939462 original size:27 final size:30
Alignment explanation
Indices: 89939370--89939459 Score: 78
Period size: 33 Copynumber: 2.9 Consensus size: 30
89939360 TATACATTTT
* *
89939370 ATTATATATCATTTTATTATATACATTAT-TCA
1 ATTATTTATTATTTTATTATAT--ATTATAT-A
* *
89939402 TTATATTTTTTATTTTATTATATATTATATA
1 AT-TATTTATTATTTTATTATATATTATATA
89939433 ATTATTTATT-TTTTATTAT-TATGTATA
1 ATTATTTATTATTTTATTATATAT-TATA
89939460 ATTTTAAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
28 3 0.06
29 13 0.27
30 7 0.14
31 7 0.14
32 2 0.04
33 17 0.35
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (30 bp):
ATTATTTATTATTTTATTATATATTATATA
Found at i:89943704 original size:40 final size:39
Alignment explanation
Indices: 89943645--89943796 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 39
89943635 CAATTGAATG
* *
89943645 ATATCCGGGCTAAGTCCCGAAGGCGATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGCTGGAAATT
* * ****
89943685 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGCTGGAAATT
* **
89943725 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCTG-GAAATT
*
89943765 CTATCCGGGCTAAGACCCGAAGGCATTCGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGC
89943797 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
39 3 0.03
40 89 0.97
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCTGGAAATT
Found at i:89943810 original size:40 final size:40
Alignment explanation
Indices: 89943683--89943812 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
89943673 ATGCTGGAAA
* * *
89943683 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
89943723 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
89943763 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
89943803 TTATATCCGG
1 TTATATCCGG
89943813 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:89946011 original size:80 final size:80
Alignment explanation
Indices: 89945927--89946075 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
89945917 TATGGTAACC
* * * *
89945927 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
89945991 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
89946007 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
89946072 CCGG
66 CCGG
89946076 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:89946017 original size:40 final size:38
Alignment explanation
Indices: 89945968--89946075 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
89945958 ATCACGATTT
*
89945968 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
89946008 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
89946048 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
89946076 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:89949673 original size:17 final size:18
Alignment explanation
Indices: 89949631--89949679 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
89949621 AGTTGAAAAG
89949631 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
89949650 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
89949667 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
89949680 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:89950567 original size:40 final size:40
Alignment explanation
Indices: 89950501--89950667 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
89950491 AAATTGAATG
* * *
89950501 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
89950540 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
89950580 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
89950620 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
89950660 ATATCCGG
1 ATATCCGG
89950668 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:89957323 original size:80 final size:80
Alignment explanation
Indices: 89957239--89957387 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
89957229 TATGGTAACC
* * * *
89957239 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
89957303 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
89957319 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
89957384 CCGG
66 CCGG
89957388 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:89957329 original size:40 final size:38
Alignment explanation
Indices: 89957280--89957387 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
89957270 ATCACGATTT
*
89957280 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
89957320 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
89957360 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
89957388 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:89966448 original size:40 final size:40
Alignment explanation
Indices: 89966321--89966450 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
89966311 ATGCTGGAAA
* * *
89966321 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
89966361 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
89966401 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
89966441 TTATATCCGG
1 TTATATCCGG
89966451 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:89971394 original size:2 final size:2
Alignment explanation
Indices: 89971387--89971418 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
89971377 AGTAATTCAA
89971387 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89971419 TTGGTAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:89972190 original size:13 final size:15
Alignment explanation
Indices: 89972168--89972199 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
89972158 CTATAAAGAT
89972168 AAAATAAAATA-TTA
1 AAAATAAAATATTTA
89972182 AAAAT-AAATATTTA
1 AAAATAAAATATTTA
89972196 AAAA
1 AAAA
89972200 ATATATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATAAAATATTTA
Found at i:89975273 original size:100 final size:100
Alignment explanation
Indices: 89975153--89975354 Score: 395
Period size: 100 Copynumber: 2.0 Consensus size: 100
89975143 AAAAATAAAT
*
89975153 TAATTTATTTATTTTTTAAAAATATATAAATGAATCAAATAAAAATTTTATATAAACATTTCAAA
1 TAATCTATTTATTTTTTAAAAATATATAAATGAATCAAATAAAAATTTTATATAAACATTTCAAA
89975218 ACCTAATCAAAATTTTATTCTAATTAAAATTCATA
66 ACCTAATCAAAATTTTATTCTAATTAAAATTCATA
89975253 TAATCTATTTATTTTTTAAAAATATATAAATGAATCAAATAAAAATTTTATATAAACATTTCAAA
1 TAATCTATTTATTTTTTAAAAATATATAAATGAATCAAATAAAAATTTTATATAAACATTTCAAA
89975318 ACCTAATCAAAATTTTATTCTAATTAAAATTCATA
66 ACCTAATCAAAATTTTATTCTAATTAAAATTCATA
89975353 TA
1 TA
89975355 TAATTTCGAC
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 101 1.00
ACGTcount: A:0.49, C:0.08, G:0.01, T:0.42
Consensus pattern (100 bp):
TAATCTATTTATTTTTTAAAAATATATAAATGAATCAAATAAAAATTTTATATAAACATTTCAAA
ACCTAATCAAAATTTTATTCTAATTAAAATTCATA
Found at i:89978250 original size:14 final size:15
Alignment explanation
Indices: 89978219--89978252 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
89978209 GTTTTTCTAT
*
89978219 TTTAATTTTTTGAAA
1 TTTAATCTTTTGAAA
89978234 TTTAATCTTTT-AAA
1 TTTAATCTTTTGAAA
89978248 TTTAA
1 TTTAA
89978253 AATTTTAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (15 bp):
TTTAATCTTTTGAAA
Found at i:89978615 original size:21 final size:20
Alignment explanation
Indices: 89978581--89978620 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
89978571 TTCTTGAAAC
*
89978581 AGGGCACACGCCCGTGTGGA
1 AGGGCACACACCCGTGTGGA
89978601 AGGGCAACACACCCGTGTGG
1 AGGGC-ACACACCCGTGTGG
89978621 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.38, T:0.10
Consensus pattern (20 bp):
AGGGCACACACCCGTGTGGA
Found at i:89980919 original size:30 final size:30
Alignment explanation
Indices: 89980883--89980983 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
89980873 GACAAGATTG
* * *
89980883 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
89980913 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
89980941 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
89980970 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
89980984 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:89980995 original size:29 final size:28
Alignment explanation
Indices: 89980912--89980987 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
89980902 AAAATTGTAC
* *
89980912 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
89980940 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
89980969 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
89980988 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:89988770 original size:30 final size:30
Alignment explanation
Indices: 89988734--89988834 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
89988724 GACAAGATTG
* * *
89988734 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
89988764 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
89988792 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
89988821 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
89988835 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:89988846 original size:29 final size:28
Alignment explanation
Indices: 89988763--89988838 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
89988753 AAAATTGTAC
* *
89988763 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
89988791 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
89988820 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
89988839 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:89990759 original size:47 final size:50
Alignment explanation
Indices: 89990688--89990956 Score: 173
Period size: 46 Copynumber: 5.7 Consensus size: 50
89990678 AGGGTATAAT
* * *
89990688 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTATC-CA-TC-AA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTTAACGAATTCGAA
* *
89990735 GTCGATGCCATGTCCCAAACATGGTCTTACACT-GAC-TAACGAATTCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAG-CTTAACGAATTCGAA
** * * *
89990784 GCCGACACCATGTCCCAAACATGGTCTTACACTAGCTCTCAC--ATATCTAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCT-TAACGAAT-TCGAA
* * * *
89990834 GCCGATGCCATATCCCAGACGTGGTCTTACACT-G----AC-ACATCTCGTA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTTAACGA-AT-TCGAA
* * * * *
89990880 GCCGATG-CATGTCTCAGACAT-GTCTTACACTGGCTT-ACG--TCACGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTTAACGAAT-TCGAA
89990926 GCCGATG-CATGTCCCAAACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACT
89990957 GGTACACAAA
Statistics
Matches: 179, Mismatches: 28, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
44 12 0.07
45 12 0.07
46 48 0.27
47 33 0.18
48 4 0.02
49 35 0.20
50 32 0.18
51 3 0.02
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTTAACGAATTCGAA
Found at i:89990884 original size:96 final size:93
Alignment explanation
Indices: 89990695--89990957 Score: 238
Period size: 96 Copynumber: 2.8 Consensus size: 93
89990685 AATGCCGATG
* *
89990695 CCATGTCCCAGACATGGTCTTACACTAGCTTATCCATCAAGTCGATGCCATGTCCCAAACATGGT
1 CCATGTCCCAGACATGGTCTTACACTAGCTTATCCATCAAGCCGATGCCATATCCCAAACATGGT
89990760 CTTACACTGACTAACGAATTCGAGGCCGACA
66 CTTACACTGAC-AAC-AATTCGAGGCCGA-A
* * * * *
89990791 CCATGTCCCAAACATGGTCTTACACTAGCTCTCA-CATATCTATGCCGATGCCATATCCCAGACG
1 CCATGTCCCAGACATGGTCTTACACTAGCT-T-ATC-CATC-AAGCCGATGCCATATCCCAAACA
*
89990855 TGGTCTTACACTGAC-AC-ATCTCGTA-GCCGAT
62 TGGTCTTACACTGACAACAAT-TCG-AGGCCGAA
* * * * *
89990886 GCATGTCTCAGACAT-GTCTTACACTGGCTTA-CGTCA-CGAGGCCGATG-CATGTCCCAAACAT
1 CCATGTCCCAGACATGGTCTTACACTAGCTTATC--CATC-AAGCCGATGCCATATCCCAAACAT
89990947 -GTCTTACACTG
63 GGTCTTACACTG
89990958 GTACACAAAT
Statistics
Matches: 141, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
90 11 0.08
91 11 0.08
92 11 0.08
93 2 0.01
94 13 0.09
95 14 0.10
96 37 0.26
97 5 0.04
98 4 0.03
99 33 0.23
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (93 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTTATCCATCAAGCCGATGCCATATCCCAAACATGGT
CTTACACTGACAACAATTCGAGGCCGAA
Found at i:89999209 original size:18 final size:18
Alignment explanation
Indices: 89999186--89999222 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
89999176 ATATTCTACC
89999186 ATAAAATTTCAGAAATCA
1 ATAAAATTTCAGAAATCA
89999204 ATAAAATTTCAGAAATCA
1 ATAAAATTTCAGAAATCA
89999222 A
1 A
89999223 CATGTCTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (18 bp):
ATAAAATTTCAGAAATCA
Found at i:90000207 original size:19 final size:18
Alignment explanation
Indices: 90000178--90000213 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
90000168 GCATTTTTTT
90000178 TTATTTTTTTCCATTTCC
1 TTATTTTTTTCCATTTCC
*
90000196 TTATTCTTTTTCCCTTTC
1 TTATT-TTTTTCCATTTC
90000214 GTACTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.08, C:0.25, G:0.00, T:0.67
Consensus pattern (18 bp):
TTATTTTTTTCCATTTCC
Found at i:90005127 original size:21 final size:21
Alignment explanation
Indices: 90005103--90005144 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
90005093 TTTTCCTATG
90005103 ATATGAATTGGACTAAATTGA
1 ATATGAATTGGACTAAATTGA
* *
90005124 ATATGAATTGTATTAAATTGA
1 ATATGAATTGGACTAAATTGA
90005145 TGTTAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.02, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATGAATTGGACTAAATTGA
Found at i:90007207 original size:16 final size:13
Alignment explanation
Indices: 90007170--90007198 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
90007160 AGACTTATGT
90007170 GGATCAGTGTGGC
1 GGATCAGTGTGGC
90007183 GGATCAGTGTGGC
1 GGATCAGTGTGGC
90007196 GGA
1 GGA
90007199 GACTCAGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.14, G:0.48, T:0.21
Consensus pattern (13 bp):
GGATCAGTGTGGC
Found at i:90007875 original size:26 final size:26
Alignment explanation
Indices: 90007839--90007899 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
90007829 TATCCAGAGA
* *
90007839 TCCTGATTAAAGGCACTTTGTGAGCT
1 TCCTGATTAAAAGCACTTTGTGAACT
* **
90007865 TCCTAATTAAAAGTTCTTTGTGAACT
1 TCCTGATTAAAAGCACTTTGTGAACT
90007891 TCCTGATTA
1 TCCTGATTA
90007900 TGGCTTTTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (26 bp):
TCCTGATTAAAAGCACTTTGTGAACT
Found at i:90013181 original size:8 final size:8
Alignment explanation
Indices: 90013168--90013210 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
90013158 AATTGAGTTC
90013168 AAAATATA
1 AAAATATA
90013176 AAAATATA
1 AAAATATA
90013184 AAAATAATA
1 AAAAT-ATA
90013193 ATAAA-ATA
1 A-AAATATA
90013201 AAAA-ATA
1 AAAATATA
90013208 AAA
1 AAA
90013211 TAAGATTCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
7 9 0.27
8 17 0.52
9 4 0.12
10 3 0.09
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAATATA
Found at i:90013201 original size:17 final size:19
Alignment explanation
Indices: 90013168--90013213 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 19
90013158 AATTGAGTTC
90013168 AAAAT-ATAA-AAATAT-A
1 AAAATAATAATAAATATAA
90013184 AAAATAATAATAAA-ATAA
1 AAAATAATAATAAATATAA
90013202 AAAATAA-AATAA
1 AAAATAATAATAA
90013214 GATTCAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 5 0.19
17 11 0.41
18 11 0.41
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAATAATAATAAATATAA
Found at i:90014133 original size:16 final size:15
Alignment explanation
Indices: 90014111--90014158 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
90014101 ATTTCATAAA
90014111 CTAAAAAAGTTAAGTG
1 CTAAAAAA-TTAAGTG
* * *
90014127 TTAAAAAAATAAGTA
1 CTAAAAAATTAAGTG
90014142 CTAAAAAATTAAGTG
1 CTAAAAAATTAAGTG
90014157 CT
1 CT
90014159 GGATTTAAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.54, C:0.06, G:0.12, T:0.27
Consensus pattern (15 bp):
CTAAAAAATTAAGTG
Found at i:90014274 original size:14 final size:14
Alignment explanation
Indices: 90014255--90014281 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
90014245 GGTAAAACAT
90014255 AATAAAATAAAAAG
1 AATAAAATAAAAAG
90014269 AATAAAATAAAAA
1 AATAAAATAAAAA
90014282 TAAGTAAGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (14 bp):
AATAAAATAAAAAG
Found at i:90035859 original size:14 final size:16
Alignment explanation
Indices: 90035827--90035865 Score: 55
Period size: 14 Copynumber: 2.5 Consensus size: 16
90035817 TAAATAATTA
90035827 TATTATTTATCATATAT
1 TATTATTTA-CATATAT
90035844 TATTATTTA-ATA-AT
1 TATTATTTACATATAT
90035858 TATTATTT
1 TATTATTT
90035866 TGGTTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.45
15 3 0.14
17 9 0.41
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTATTTACATATAT
Found at i:90038615 original size:51 final size:51
Alignment explanation
Indices: 90038539--90038641 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
90038529 TCTATGGTAG
90038539 AGATAATCTCTCATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA
1 AGATAATCTCTCATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA
90038590 AGATAATCTCTCATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA
1 AGATAATCTCTCATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA
90038641 A
1 A
90038642 CTCAACAATG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (51 bp):
AGATAATCTCTCATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA
Found at i:90042753 original size:17 final size:18
Alignment explanation
Indices: 90042712--90042753 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
90042702 ATCGTTTAAT
*
90042712 GGGTGTATTTTTTTCTAT
1 GGGTGTATTTTTTTCTAA
90042730 GGGTGTA-TTTTTTCTAA
1 GGGTGTATTTTTTTCTAA
*
90042747 GGTTGTA
1 GGGTGTA
90042754 AAAAAATCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.14, C:0.05, G:0.26, T:0.55
Consensus pattern (18 bp):
GGGTGTATTTTTTTCTAA
Found at i:90054593 original size:30 final size:30
Alignment explanation
Indices: 90054557--90054616 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
90054547 GAAAACCAAG
90054557 TAAGCATTTAATGCTTAGTAAGTTCGTATA
1 TAAGCATTTAATGCTTAGTAAGTTCGTATA
*
90054587 TAAGCATTTAATGCTTAGTAAGTTTGTATA
1 TAAGCATTTAATGCTTAGTAAGTTCGTATA
90054617 AAAGGAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (30 bp):
TAAGCATTTAATGCTTAGTAAGTTCGTATA
Found at i:90055275 original size:13 final size:13
Alignment explanation
Indices: 90055257--90055281 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90055247 TCGAGCACAC
90055257 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
90055270 GCCCGTGTCCCT
1 GCCCGTGTCCCT
90055282 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:90055782 original size:33 final size:33
Alignment explanation
Indices: 90055740--90055806 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
90055730 GTATTTAGGA
90055740 TTACCACTCCAATAATCACATTTTATACTTGGC
1 TTACCACTCCAATAATCACATTTTATACTTGGC
90055773 TTACCACTCCAATAATCACATTTTATACTTGGC
1 TTACCACTCCAATAATCACATTTTATACTTGGC
90055806 T
1 T
90055807 CGTTTTATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (33 bp):
TTACCACTCCAATAATCACATTTTATACTTGGC
Found at i:90064711 original size:28 final size:28
Alignment explanation
Indices: 90064679--90064748 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 28
90064669 ACAGTAAGTC
90064679 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATT-AAACT
90064707 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
90064735 CGCACACTTAGTGC
1 CGCACACTTAGTGC
90064749 CAATCTCATT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
28 34 0.85
29 5 0.12
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATTAAACT
Found at i:90072459 original size:28 final size:28
Alignment explanation
Indices: 90072427--90072495 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
90072417 CAGTAAGTCT
90072427 GCACACTTAGTGCT-TA-ATATTCAAACTC
1 GCACACTTAGTGCTATACA-ATT-AAACTC
90072455 GCACACTTAGTGCTATACAATTAAACTC
1 GCACACTTAGTGCTATACAATTAAACTC
90072483 GCACACTTAGTGC
1 GCACACTTAGTGC
90072496 CAATCTCATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
28 33 0.85
29 5 0.13
30 1 0.03
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (28 bp):
GCACACTTAGTGCTATACAATTAAACTC
Found at i:90074390 original size:50 final size:50
Alignment explanation
Indices: 90074331--90074434 Score: 208
Period size: 50 Copynumber: 2.1 Consensus size: 50
90074321 TTTACAGCCT
90074331 TCATCAAAATGAGCCATATCCTATGGCCATATACAAAATGAATAAGTATA
1 TCATCAAAATGAGCCATATCCTATGGCCATATACAAAATGAATAAGTATA
90074381 TCATCAAAATGAGCCATATCCTATGGCCATATACAAAATGAATAAGTATA
1 TCATCAAAATGAGCCATATCCTATGGCCATATACAAAATGAATAAGTATA
90074431 TCAT
1 TCAT
90074435 TCAAGCCCTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (50 bp):
TCATCAAAATGAGCCATATCCTATGGCCATATACAAAATGAATAAGTATA
Found at i:90081543 original size:42 final size:42
Alignment explanation
Indices: 90081442--90081554 Score: 131
Period size: 40 Copynumber: 2.7 Consensus size: 42
90081432 ATCTGGTATC
* * * * *
90081442 GATGCCAATAGCCCAGCTATGGCCTTACACAAAATCTTATATC
1 GATGCC-ATATCCCAGATATGGTCTTACACAAAATCTCATATA
* * *
90081485 GATGCC--ATCCCAGATATGGTCTTATACGAAGTCTCATATA
1 GATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATA
90081525 GATGCCATATCCCAGATATGGTCTTACACA
1 GATGCCATATCCCAGATATGGTCTTACACA
90081555 TAGTTTTAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
40 32 0.55
42 20 0.34
43 6 0.10
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
GATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATA
Found at i:90081938 original size:51 final size:51
Alignment explanation
Indices: 90081878--90081979 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
90081868 TCACATTATG
* *
90081878 GAAAAATTATATTTTTGCCCTTAAAGTTTCACATTTTTACATTTTAGTCCT
1 GAAAAATTATATTTTGGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCCT
90081929 GAAAAATTATATTTTGGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCCT
1 GAAAAATTATATTTTGGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCCT
90081980 TAGGCTCGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (51 bp):
GAAAAATTATATTTTGGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCCT
Found at i:90089412 original size:20 final size:19
Alignment explanation
Indices: 90089379--90089418 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
90089369 TATAAATTTT
90089379 AAATATATATAATATATAAA
1 AAATATATATAATAT-TAAA
90089399 AAATACTATA-AATATTAAA
1 AAATA-TATATAATATTAAA
90089418 A
1 A
90089419 TAAATATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 10 0.53
21 4 0.21
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATATATATAATATTAAA
Found at i:90091337 original size:5 final size:5
Alignment explanation
Indices: 90091327--90091364 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
90091317 AATAATTAAG
90091327 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
90091365 TATATATAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:90092553 original size:6 final size:6
Alignment explanation
Indices: 90092542--90092566 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
90092532 TTGTGTACCG
90092542 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
90092567 CTGGCTTCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:90098584 original size:5 final size:5
Alignment explanation
Indices: 90098574--90098627 Score: 99
Period size: 5 Copynumber: 10.6 Consensus size: 5
90098564 AATAATTAAG
90098574 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATTAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT
90098625 TAT
1 TAT
90098628 TATATATAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 43 0.90
6 5 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:90099753 original size:6 final size:6
Alignment explanation
Indices: 90099742--90099778 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
90099732 GTGTGTCGAA
*
90099742 TACTGT TACTGT TACCGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT T
90099779 TCGGATTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (6 bp):
TACTGT
Found at i:90101003 original size:29 final size:29
Alignment explanation
Indices: 90100961--90101018 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
90100951 TCTAGTAAGA
90100961 TTGTTTCCCTTTCCCCTTTTGATGCAAAG
1 TTGTTTCCCTTTCCCCTTTTGATGCAAAG
90100990 TTGTTTCCCTTTCCCCTTTTGATGCAAAG
1 TTGTTTCCCTTTCCCCTTTTGATGCAAAG
90101019 CTATCTTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (29 bp):
TTGTTTCCCTTTCCCCTTTTGATGCAAAG
Found at i:90106232 original size:29 final size:29
Alignment explanation
Indices: 90106190--90106246 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
90106180 TCTCCGATAA
90106190 TAACCAGCTAGTCCCAAAAAACTTCAAAG
1 TAACCAGCTAGTCCCAAAAAACTTCAAAG
90106219 TAACCAGCTAGTCCCAAAAAACTTCAAA
1 TAACCAGCTAGTCCCAAAAAACTTCAAA
90106247 CTTCTAACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.46, C:0.28, G:0.09, T:0.18
Consensus pattern (29 bp):
TAACCAGCTAGTCCCAAAAAACTTCAAAG
Found at i:90110883 original size:31 final size:31
Alignment explanation
Indices: 90110848--90110912 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
90110838 AGGCATTGGC
90110848 ACATACATGCATATATATAAAATATAAGCTT
1 ACATACATGCATATATATAAAATATAAGCTT
* *
90110879 ACATACATGCATATATATAACATATAATCTT
1 ACATACATGCATATATATAAAATATAAGCTT
90110910 ACA
1 ACA
90110913 ACCAATTCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.15, G:0.05, T:0.32
Consensus pattern (31 bp):
ACATACATGCATATATATAAAATATAAGCTT
Found at i:90118613 original size:9 final size:9
Alignment explanation
Indices: 90118596--90118632 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
90118586 TTAATTTAGG
*
90118596 TTTATTTAA
1 TTTAATTAA
90118605 TTTAATTAA
1 TTTAATTAA
*
90118614 TTTAATTAG
1 TTTAATTAA
90118623 TTTAATTAA
1 TTTAATTAA
90118632 T
1 T
90118633 ACTTTAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (9 bp):
TTTAATTAA
Found at i:90122679 original size:22 final size:22
Alignment explanation
Indices: 90122651--90122692 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
90122641 AAAAGACTGA
90122651 TTAATAAAACAAATTCATTTGG
1 TTAATAAAACAAATTCATTTGG
90122673 TTAATAAAACAAATTCATTT
1 TTAATAAAACAAATTCATTT
90122693 ACTACAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.10, G:0.05, T:0.38
Consensus pattern (22 bp):
TTAATAAAACAAATTCATTTGG
Found at i:90131845 original size:47 final size:47
Alignment explanation
Indices: 90131791--90131984 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
90131781 TTAGGATTTT
** * * *
90131791 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
90131838 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
90131885 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
90131932 ATGTGATGAATGTGAGCATGCATATGTGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
90131979 ATGTGA
1 ATGTGA
90131985 AATATGTATG
Statistics
Matches: 137, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 137 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:90131866 original size:25 final size:25
Alignment explanation
Indices: 90131838--90131916 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
90131828 TGAATGGCCA
90131838 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
90131863 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
90131885 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
90131910 ATGTGAT
1 ATGTGAT
90131917 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:90131891 original size:22 final size:22
Alignment explanation
Indices: 90131863--90131938 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
90131853 ACATGCATAT
90131863 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
90131885 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
90131909 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
90131932 ATGTGAT
1 ATGTGAT
90131939 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:90132045 original size:50 final size:48
Alignment explanation
Indices: 90131958--90132236 Score: 436
Period size: 48 Copynumber: 5.7 Consensus size: 48
90131948 CATGCATATG
*
90131958 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
90132006 TGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTATA
*
90132056 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
90132104 TGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTATA
*
90132154 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
90132202 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
90132237 GGCGATGTGC
Statistics
Matches: 215, Mismatches: 8, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
47 2 0.01
48 120 0.56
49 8 0.04
50 83 0.39
51 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:90132252 original size:98 final size:98
Alignment explanation
Indices: 90131958--90132233 Score: 509
Period size: 98 Copynumber: 2.8 Consensus size: 98
90131948 CATGCATATG
* *
90131958 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
90132023 GTCAATGTGAAATATATATATGAGATATGTATA
66 GTCAATGTGAAATATATATATGAGATATGTATA
90132056 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
90132121 GTCAATGTGAAATATATATATGAGATATGTATA
66 GTCAATGTGAAATATATATATGAGATATGTATA
90132154 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
90132219 G-CTAGTGTGAAATAT
66 GTC-AATGTGAAATAT
90132234 GTAGGCGATG
Statistics
Matches: 174, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
97 1 0.01
98 173 0.99
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (98 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
GTCAATGTGAAATATATATATGAGATATGTATA
Found at i:90132437 original size:37 final size:37
Alignment explanation
Indices: 90132387--90132526 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
90132377 ATATATTCCC
*
90132387 GGTAAGACTCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
90132424 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
90132461 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
90132498 GGTAAGACCCGATAACTTCGTGTGGAGAT
1 GGTAAGACCCGATGACTACGTGTGGAGAT
90132527 CTCGTCTGAG
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:90136238 original size:20 final size:20
Alignment explanation
Indices: 90136197--90136241 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
90136187 ATTGGTTCAA
*
90136197 TATTGGTACTTAGAGGTAAG
1 TATTGGTACTTAGAGCTAAG
*
90136217 TATTGGTACTGTA-AGCTTAG
1 TATTGGTACT-TAGAGCTAAG
90136237 TATTG
1 TATTG
90136242 ATACCTTCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (20 bp):
TATTGGTACTTAGAGCTAAG
Found at i:90140779 original size:45 final size:44
Alignment explanation
Indices: 90140726--90140812 Score: 165
Period size: 45 Copynumber: 2.0 Consensus size: 44
90140716 GAATGTTTCA
90140726 AATTATAAATGAAATTTTATGGCTCAGGTTTGCATGATTGCTTGT
1 AATTATAAATGAAATTTTATGGCTC-GGTTTGCATGATTGCTTGT
90140771 AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTT
1 AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTT
90140813 TTGTTTTAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 17 0.40
45 25 0.60
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.43
Consensus pattern (44 bp):
AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTTGT
Found at i:90155573 original size:46 final size:46
Alignment explanation
Indices: 90155523--90155698 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
90155513 TGGTTGAGCA
90155523 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
90155569 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
90155614 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
90155662 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
90155699 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:90155679 original size:93 final size:93
Alignment explanation
Indices: 90155520--90155691 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
90155510 GGATGGTTGA
* *
90155520 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
90155585 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
90155613 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
90155678 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
90155692 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:90161770 original size:40 final size:39
Alignment explanation
Indices: 90161700--90161837 Score: 172
Period size: 40 Copynumber: 3.5 Consensus size: 39
90161690 AAACCAAGTA
* * *
90161700 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATG
1 CCTTCGAGACTTAGCCCGGATATAG-TACTCGCACAAATG
90161739 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGAGACTTAGCCCGGATATAGT-ACTCGCACAAATG
* *
90161779 CCTTCGAGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGAGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
*
90161819 CCTTCGGGACTTAGCCCGG
1 CCTTCGAGACTTAGCCCGG
90161838 TTACCATCCG
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
39 16 0.18
40 71 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGAGACTTAGCCCGGATATAGTACTCGCACAAATG
Found at i:90165900 original size:93 final size:93
Alignment explanation
Indices: 90165788--90165960 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
90165778 CGCCCATAAG
* *
90165788 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
90165853 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
90165881 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
90165946 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
90165961 CAAATATCCA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:90165956 original size:46 final size:46
Alignment explanation
Indices: 90165781--90165956 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
90165771 TGTAACCCGC
* * *
90165781 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
90165827 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
90165877 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
90165920 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
90165957 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:90174556 original size:40 final size:40
Alignment explanation
Indices: 90174428--90174577 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
90174418 ATAAGCATGT
* * *
90174428 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** *
90174468 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
90174508 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* *
90174548 GCATAATTGTCTTCGGG--TTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
90174578 CATTCAATTT
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
38 12 0.13
39 2 0.02
40 77 0.83
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Done.