Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 290 of 433
Found at i:90476059 original size:5 final size:5
Alignment explanation
Indices: 90476049--90476081 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
90476039 CTGTATGTTC
90476049 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
90476082 TCACAAAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:90487182 original size:40 final size:40
Alignment explanation
Indices: 90487125--90487270 Score: 127
Period size: 40 Copynumber: 3.6 Consensus size: 40
90487115 TCGAATGATG
* *
90487125 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTG-TAAGTGACTAAA
* *
90487165 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGTAAGTGACTAAA
** * ** *
90487205 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGTAAGTGACTA-AA
* * *
90487246 T-CGGGCTATGTCCCGAAGACATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
90487271 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 79 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGTAAGTGACTAAA
Found at i:90494654 original size:48 final size:49
Alignment explanation
Indices: 90494592--90494912 Score: 239
Period size: 48 Copynumber: 6.7 Consensus size: 49
90494582 TGATATATGT
* * * *
90494592 GCCAGTGTTAGACCATGTCTAGG-ACATGGCGTCGGCCACGATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGAACATGGCATCGGCCACGACATGAGA
* * * * ***
90494640 GCCAATGTAAGACCATGT-TTGGAACATGGCATCGGCGATGTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGAACATGGCATCGGCCACGACATGAGA
* * * * * * **
90494688 GTCAATGTAAGACCATGCCTGGG-ACATGGCATC-GACATTGAGACAAGA
1 GCCAGTGTAAGACCATGTCTGGGAACATGGCATCGGCCA-CGACATGAGA
* * *
90494736 GCTAGTGTAAGACCATGTTTGGG-ACATGGCATCGGCCTCGACATGTA-A
1 GCCAGTGTAAGACCATGTCTGGGAACATGGCATCGGCCACGACATG-AGA
* * * * * **
90494784 GCCAGTGTAAAACCATGT-TTGGAACATGGTATCGG-CATTGAGACAAGA
1 GCCAGTGTAAGACCATGTCTGGGAACATGGCATCGGCCA-CGACATGAGA
* * *
90494832 GCTAGTGTAAGACCATGTCT-GGAACATGGCATCGGCCTCGACATGTGA
1 GCCAGTGTAAGACCATGTCTGGGAACATGGCATCGGCCACGACATGAGA
* *
90494880 GCTAGTGTAAGACCATGT-TTGGAACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGAACATGGCATC
90494913 AGCAATTCAC
Statistics
Matches: 215, Mismatches: 47, Indels: 22
0.76 0.17 0.08
Matches are distributed among these distances:
47 11 0.05
48 196 0.91
49 8 0.04
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
GCCAGTGTAAGACCATGTCTGGGAACATGGCATCGGCCACGACATGAGA
Found at i:90494765 original size:96 final size:93
Alignment explanation
Indices: 90494645--90494912 Score: 293
Period size: 96 Copynumber: 2.8 Consensus size: 93
90494635 TGAGAGCCAA
** * *
90494645 TGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTGTGAGAGTCAATGTAAGACCATGCCTGG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCGA-CATGT-A-AGCCAATGTAAAACCATGCCTGG
*
90494710 GACATGGCATCGACATTGAGACAAGAGCTAG
63 AACATGGCATCGACATTGAGACAAGAGCTAG
* * **
90494741 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTAAGCCAGTGTAAAACCATGTTTGG
1 TGTAAGACCATGTTTGGAACATGGCATCGG---CGACATGTAAGCCAATGTAAAACCATGCCTGG
* *
90494806 AACATGGTATCGGCATTGAGACAAGAGCTAG
63 AACATGGCATCGACATTGAGACAAGAGCTAG
* * * * * **
90494837 TGTAAGACCATGTCTGGAACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTTTGGAACATGGCATCGG---CGACATGTAAGCCAATGTAAAACCATGCCTGG
90494902 AACATGGCATC
63 AACATGGCATC
90494913 AGCAATTCAC
Statistics
Matches: 152, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
96 145 0.95
97 1 0.01
98 3 0.02
99 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (93 bp):
TGTAAGACCATGTTTGGAACATGGCATCGGCGACATGTAAGCCAATGTAAAACCATGCCTGGAAC
ATGGCATCGACATTGAGACAAGAGCTAG
Found at i:90494859 original size:144 final size:143
Alignment explanation
Indices: 90494595--90494912 Score: 365
Period size: 144 Copynumber: 2.2 Consensus size: 143
90494585 TATATGTGCC
* * * * * *
90494595 AGTGTTAGACCATGTCTAGGACATGGCGTCGGCCACGATATGAGAGCCAATGTAAGACCATGTTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGACATGAGAGCCAATGTAAAACCATGTTT
* *
90494660 GGAACATGGCATCGGCGATGTTGTGAGAGTCAATGTAAGACCATGCCTGGGACATGGCATCGACA
66 GGAACATGGCATCGGCGA-GTTGAGAGAGTCAATGTAAGACCATGCCTGGAACATGGCATCGACA
* *
90494725 TTGAGACAAGAGCT
130 TCGACACAAGAGCT
* *
90494739 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTA-AGCCAGTGTAAAACCATGTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGACATG-AGAGCCAATGTAAAACCATGTT
* * *
90494803 TGGAACATGGTATCGGC-A-TTGAGACAAGAG-CTAGTGTAAGACCATGTCTGGAACATGGCATC
65 TGGAACATGGCATCGGCGAGTTGAG---AGAGTC-AATGTAAGACCATGCCTGGAACATGGCATC
* * ***
90494865 GGCCTCGACATGTGAGCT
126 GACATCGACACAAGAGCT
*
90494883 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTTTGGGACATGGCATC
90494913 AGCAATTCAC
Statistics
Matches: 148, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
141 4 0.03
143 2 0.01
144 141 0.95
145 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (143 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGACATGAGAGCCAATGTAAAACCATGTTT
GGAACATGGCATCGGCGAGTTGAGAGAGTCAATGTAAGACCATGCCTGGAACATGGCATCGACAT
CGACACAAGAGCT
Found at i:90499496 original size:47 final size:47
Alignment explanation
Indices: 90499442--90499954 Score: 760
Period size: 47 Copynumber: 11.0 Consensus size: 47
90499432 TTAGGATTTT
** *
90499442 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
90499489 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
90499536 ATGTGGTGAATATGAACATG--TATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
90499581 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
90499628 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
90499675 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
90499722 ATGTGGTGAATGTGAACATCCATATATGTGATAAGGCCGAATAGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
90499769 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
90499816 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
90499863 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
90499910 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
90499955 TAGTGTGAAA
Statistics
Matches: 417, Mismatches: 47, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
45 40 0.10
47 377 0.90
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:90499544 original size:25 final size:25
Alignment explanation
Indices: 90499469--90499544 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
90499459 GTGTATATAT
90499469 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
90499494 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
90499516 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
90499541 GTGA
1 GTGA
90499545 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:90499636 original size:25 final size:25
Alignment explanation
Indices: 90499562--90499636 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 25
90499552 CATGTATATA
*
90499562 TGATAAGGCCGAATGGCCAATGTGA
1 TGATAAGGCCGAATGGCCAATGTGG
* * *
90499587 TGA-ATGTG-AGCAT-G-CATATGT-G
1 TGATAAG-GCCGAATGGCCA-ATGTGG
90499609 TGATAAGGCCGAATGGCCAATGTGG
1 TGATAAGGCCGAATGGCCAATGTGG
90499634 TGA
1 TGA
90499637 ATATGAACAT
Statistics
Matches: 36, Mismatches: 7, Indels: 14
0.63 0.12 0.25
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.24
Consensus pattern (25 bp):
TGATAAGGCCGAATGGCCAATGTGG
Found at i:90499802 original size:25 final size:25
Alignment explanation
Indices: 90499722--90499847 Score: 72
Period size: 25 Copynumber: 5.3 Consensus size: 25
90499712 CGAGTGGCCA
* *
90499722 ATGTGGTGAATGTGAACATCCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * * *
90499747 ATGTGAT-AAGGCCGAATA-GC--CT
1 ATGTGATGAATG-TGAACATGCATAT
90499769 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
90499794 ATGTGATG-AGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
*
90499816 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
90499841 ATGTGAT
1 ATGTGAT
90499848 AAGGCCGAAT
Statistics
Matches: 72, Mismatches: 17, Indels: 24
0.64 0.15 0.21
Matches are distributed among these distances:
22 21 0.29
23 12 0.17
24 12 0.17
25 27 0.38
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:90499918 original size:25 final size:25
Alignment explanation
Indices: 90499843--90499918 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
90499833 ATGCATATAT
90499843 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
90499868 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
90499890 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
90499915 GTGA
1 GTGA
90499919 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:90500167 original size:37 final size:36
Alignment explanation
Indices: 90500117--90500268 Score: 223
Period size: 37 Copynumber: 4.1 Consensus size: 36
90500107 GGAAATATAT
* *
90500117 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTTG
90500154 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTTG
*
90500191 TCCGGGTAAGACCCGATGACTACATGTGGAGATCTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAT-TTG
* *
90500228 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT-G
90500265 TCCG
1 TCCG
90500269 AGCTAAAGGT
Statistics
Matches: 106, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
36 3 0.03
37 103 0.97
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
Found at i:90514908 original size:20 final size:20
Alignment explanation
Indices: 90514883--90514925 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
90514873 GGGAGCAGTT
* *
90514883 TTTCAATTGATTTAAAAATG
1 TTTCAATTGAGTTAAAAAAG
90514903 TTTCAATTGAGTTAAAAAAG
1 TTTCAATTGAGTTAAAAAAG
90514923 TTT
1 TTT
90514926 AAACTGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (20 bp):
TTTCAATTGAGTTAAAAAAG
Found at i:90514970 original size:20 final size:21
Alignment explanation
Indices: 90514947--90514987 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
90514937 AAACTTTATC
90514947 CAAAA-ATTTTTCTAAG-TGTT
1 CAAAACATTTTT-TAAGATGTT
90514967 CAAAACATTTTTTAAGATGTT
1 CAAAACATTTTTTAAGATGTT
90514988 TGGAAGTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (21 bp):
CAAAACATTTTTTAAGATGTT
Found at i:90523132 original size:44 final size:46
Alignment explanation
Indices: 90522937--90523248 Score: 155
Period size: 49 Copynumber: 6.6 Consensus size: 46
90522927 AGAGCCAATG
* * * * *
90522937 TAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGGGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGCATAGAGATGAGCGCCAGTA
* ** * * ** * ** **
90522985 TAAGACATGTCTAGGATGTGCATCGCCACA-TTATAATAGCCAGCG
1 TAAGACATGTCTGGGACATGCATCGGCATAGAGATGAGCGCCAGTA
*
90523030 TAAGACCATGTCTGGGACATGGTATCGGCATAGAGATGAGCGCCAGTA
1 TAAGA-CATGTCTGGGACAT-GCATCGGCATAGAGATGAGCGCCAGTA
* * *
90523078 TAAGACATGTCTGGGACATGCATCGG-TTA-AG-TGTAGTGCTAGTA
1 TAAGACATGTCTGGGACATGCATCGGCATAGAGATG-AGCGCCAGTA
* * * * * * *
90523122 TAAGACATGTCTAGGACATGCATCAGCACGTACATATGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCA--TAGAGATGAGCGCCAGTA
* * * * * ** *
90523170 TAAGACCATGTCTAGGAAATGGCATCGGCCTCGATGAAGATAGCCAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGCATAGA-GATGAGCGCCAGTA
*
90523219 TAAGACCATGTCTGGGACATGGCATTGGCA
1 TAAGA-CATGTCTGGGACAT-GCATCGGCA
90523249 ACTTAACCCA
Statistics
Matches: 202, Mismatches: 50, Indels: 23
0.73 0.18 0.08
Matches are distributed among these distances:
43 2 0.01
44 34 0.17
45 14 0.07
46 25 0.12
47 35 0.17
48 34 0.17
49 51 0.25
50 7 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGGCATAGAGATGAGCGCCAGTA
Found at i:90523197 original size:140 final size:140
Alignment explanation
Indices: 90522926--90523239 Score: 341
Period size: 140 Copynumber: 2.2 Consensus size: 140
90522916 TGGGTTATGT
* * * *
90522926 GAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGAC
1 GAGAGCCAGTATAAGACCATGTCTGGGACAT-GCATCGG-ATTAAGACGAGGGCTAGTATAAGAC
** * * * *
90522991 ATGTCTAGGATGTGCATCGCCACATTATAATAGCCAGCGTAAGACCATGTCTGGGACATGGTATC
64 ATGTCTAGGACATGCATCGCCACATTATAAGAGCCAGCGTAAGACCATGTCTAGGAAATGGCATC
*
90523056 GGCATAGA-GAT
129 GGCATAGATGAA
* * *
90523067 GAGCGCCAGTATAAGA-CATGTCTGGGACATGCATCGG-TTAAG-TGTAGTGCTAGTATAAGACA
1 GAGAGCCAGTATAAGACCATGTCTGGGACATGCATCGGATTAAGACG-AGGGCTAGTATAAGACA
* * *
90523129 TGTCTAGGACATGCATCAGCACGTACA-TATGAGAGCTAGTGTAAGACCATGTCTAGGAAATGGC
65 TGTCTAGGACATGCATC-GC-C--ACATTATAAGAGCCAGCGTAAGACCATGTCTAGGAAATGGC
* *
90523193 ATCGGCCTCGATGAA
126 ATCGGCATAGATGAA
* *
90523208 GATAGCCAGTGTAAGACCATGTCTGGGACATG
1 GAGAGCCAGTATAAGACCATGTCTGGGACATG
90523240 GCATTGGCAA
Statistics
Matches: 144, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
136 1 0.01
137 34 0.24
138 2 0.01
139 8 0.06
140 53 0.37
141 31 0.22
142 15 0.10
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (140 bp):
GAGAGCCAGTATAAGACCATGTCTGGGACATGCATCGGATTAAGACGAGGGCTAGTATAAGACAT
GTCTAGGACATGCATCGCCACATTATAAGAGCCAGCGTAAGACCATGTCTAGGAAATGGCATCGG
CATAGATGAA
Found at i:90526828 original size:17 final size:18
Alignment explanation
Indices: 90526786--90526834 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
90526776 AGTTGAAAAG
90526786 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
90526805 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
90526822 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
90526835 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:90527726 original size:40 final size:40
Alignment explanation
Indices: 90527660--90527826 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
90527650 AAATTGAATG
* * *
90527660 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
90527699 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
90527739 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
90527779 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
90527819 ATATCCGG
1 ATATCCGG
90527827 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:90535742 original size:40 final size:40
Alignment explanation
Indices: 90535676--90535842 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
90535666 AAATTGAATG
* * *
90535676 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
90535715 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
90535755 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
90535795 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
90535835 ATATCCGG
1 ATATCCGG
90535843 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:90537353 original size:79 final size:79
Alignment explanation
Indices: 90537244--90537466 Score: 290
Period size: 79 Copynumber: 2.8 Consensus size: 79
90537234 TACTCGTTCA
* * *
90537244 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
90537309 TTAGTAACTCGCACC
65 TTAGTAACTCGCACC
*
90537324 AATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGA
*
90537387 ATTAGTAACTCGCACG
64 ATTAGTAACTCGCACC
* * * * *
90537403 AGTGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
90537467 CATCATTCGA
Statistics
Matches: 126, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 4 0.03
79 66 0.52
80 44 0.35
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
TAGTAACTCGCACC
Found at i:90537426 original size:119 final size:120
Alignment explanation
Indices: 90537242--90537466 Score: 289
Period size: 119 Copynumber: 1.9 Consensus size: 120
90537232 GCTACTCGTT
*
90537242 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
90537307 ATTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
66 ATATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * **
90537361 CAAATGCCTTC-GGATCTTAGTCCGGA-ATTAGTAACTCGCACGAGTGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
*
90537423 CGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
90537467 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 7 0.08
119 69 0.76
120 15 0.16
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:90537466 original size:40 final size:40
Alignment explanation
Indices: 90537223--90537466 Score: 277
Period size: 40 Copynumber: 6.1 Consensus size: 40
90537213 CGGAATTTAA
**
90537223 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90537263 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90537303 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
90537342 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
90537382 CCGGA-ATTAGTAACTCGCACGAGTGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
90537422 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
90537462 CCGGA
1 CCGGA
90537467 CATCATTCGA
Statistics
Matches: 179, Mismatches: 18, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.18
40 134 0.75
41 10 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:90541206 original size:18 final size:18
Alignment explanation
Indices: 90541183--90541219 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
90541173 GCCTTCTTCC
90541183 AAATGATGAATGAACGGT
1 AAATGATGAATGAACGGT
*
90541201 AAATGATGAATGAAGGGT
1 AAATGATGAATGAACGGT
90541219 A
1 A
90541220 TTCTAAGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.30, T:0.22
Consensus pattern (18 bp):
AAATGATGAATGAACGGT
Found at i:90542127 original size:31 final size:29
Alignment explanation
Indices: 90542092--90542158 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
90542082 ATCTCAAAAC
*
90542092 TATACATAAACTATGGTTTAATGTGCAATTG
1 TATACATAAACTATGATTT--TGTGCAATTG
* * *
90542123 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATAAACTATGATTTTGTGCAATTG
90542152 TATACAT
1 TATACAT
90542159 GAAATTTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (29 bp):
TATACATAAACTATGATTTTGTGCAATTG
Found at i:90542148 original size:29 final size:30
Alignment explanation
Indices: 90542113--90542171 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
90542103 TATGGTTTAA
90542113 TGTGCAATTGTATACATG-AACTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
* *
90542142 TGTGCAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
90542172 GATCCAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.29, C:0.08, G:0.15, T:0.47
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAACTTTGATTT
Found at i:90542180 original size:30 final size:29
Alignment explanation
Indices: 90542117--90542180 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
90542107 GTTTAATGTG
*
90542117 CAATTGTATACATGAACTTTGATTTTGTG
1 CAATTGTATACATGAACTTTGATTTTGTC
* *
90542146 CAATTTTATACATGAAATTTTGA-TTTGATC
1 CAATTGTATACATG-AACTTTGATTTTG-TC
90542176 CAATT
1 CAATT
90542181 CTTGTAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.45
Consensus pattern (29 bp):
CAATTGTATACATGAACTTTGATTTTGTC
Found at i:90542387 original size:29 final size:30
Alignment explanation
Indices: 90542315--90542400 Score: 93
Period size: 31 Copynumber: 2.9 Consensus size: 30
90542305 TAAGTAAAAT
* * * *
90542315 TTAAAGTTTCAAGTATACATTTGAACCTCAA
1 TTAAAGTTTCATGTATACAATTGCACC-GAA
* * *
90542346 TTAGAGTTTCATGTTTATAATTGCACCGAA
1 TTAAAGTTTCATGTATACAATTGCACCGAA
90542376 TTAAAG-TTCATGTATACAATTGCAC
1 TTAAAGTTTCATGTATACAATTGCAC
90542401 AACAAATCAA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
29 17 0.38
30 7 0.16
31 21 0.47
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (30 bp):
TTAAAGTTTCATGTATACAATTGCACCGAA
Found at i:90542416 original size:31 final size:29
Alignment explanation
Indices: 90542353--90542422 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
90542343 CAATTAGAGT
* * * *
90542353 TTCATGTTTATAATTGCACCGAATTAAAG
1 TTCATGTATACAATTGCACCAAATCAAAG
90542382 TTCATGTATACAATTGCACAACAAATCAAAG
1 TTCATGTATACAATTGCAC--CAAATCAAAG
*
90542413 TTCATATATA
1 TTCATGTATA
90542423 ATTTTGAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 17 0.50
31 17 0.50
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (29 bp):
TTCATGTATACAATTGCACCAAATCAAAG
Found at i:90544217 original size:40 final size:37
Alignment explanation
Indices: 90544113--90544211 Score: 135
Period size: 37 Copynumber: 2.6 Consensus size: 37
90544103 CAATTTCCTC
* *
90544113 AAATCAAACCCTCAAATTCATTCTTCTTCAAAAATCCCT
1 AAATTAAACCCTC-CATTC-TTCTTCTTCAAAAATCCCT
* *
90544152 AAATTAAATCCTCCATTCTTCTTCTTCAAAAATCTCT
1 AAATTAAACCCTCCATTCTTCTTCTTCAAAAATCCCT
*
90544189 AAATTAAACCCTCCATTTTTCTT
1 AAATTAAACCCTCCATTCTTCTT
90544212 TTTCTTCGTC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
37 39 0.72
38 4 0.07
39 11 0.20
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.37
Consensus pattern (37 bp):
AAATTAAACCCTCCATTCTTCTTCTTCAAAAATCCCT
Found at i:90544405 original size:2 final size:2
Alignment explanation
Indices: 90544398--90544436 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
90544388 ACACTGAGTA
90544398 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
90544437 AAGATAGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:90545421 original size:17 final size:17
Alignment explanation
Indices: 90545401--90545448 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
90545391 AAATGTGTAA
90545401 AAAATATATAAAAATTC
1 AAAATATATAAAAATTC
* * *
90545418 AAAATATATTAAATTTT
1 AAAATATATAAAAATTC
*
90545435 AAAA-AAATAAAAAT
1 AAAATATATAAAAAT
90545449 ATTGTTTATA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
16 7 0.28
17 18 0.72
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAATATATAAAAATTC
Found at i:90554770 original size:43 final size:42
Alignment explanation
Indices: 90554690--90554771 Score: 121
Period size: 45 Copynumber: 1.9 Consensus size: 42
90554680 AATTCTATCT
90554690 AAAAATATCATAGATGTTTGAAAATATATTGTATGAGATTTAA
1 AAAAATATCATAGATGTTTGAAAATATATTG-ATGAGATTTAA
*
90554733 AAAAATTATCAATAGATGTTTGAAAATATCTTG-TGAGAT
1 AAAAA-TATC-ATAGATGTTTGAAAATATATTGATGAGAT
90554772 CTTCAGAATC
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
43 11 0.31
44 4 0.11
45 21 0.58
ACGTcount: A:0.45, C:0.04, G:0.15, T:0.37
Consensus pattern (42 bp):
AAAAATATCATAGATGTTTGAAAATATATTGATGAGATTTAA
Found at i:90571947 original size:15 final size:16
Alignment explanation
Indices: 90571927--90571962 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
90571917 AACCCTTTTA
90571927 AAAAAACCTTAAA-TT
1 AAAAAACCTTAAACTT
90571942 AAAAAACCTTAAACTT
1 AAAAAACCTTAAACTT
90571958 AAAAA
1 AAAAA
90571963 TATTAAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAAAACCTTAAACTT
Found at i:90571978 original size:24 final size:24
Alignment explanation
Indices: 90571943--90572005 Score: 99
Period size: 24 Copynumber: 2.6 Consensus size: 24
90571933 CCTTAAATTA
*
90571943 AAAAACCTTAAACTTAAAAATATT
1 AAAAACCCTAAACTTAAAAATATT
* *
90571967 AAAACCCCTAAACCTAAAAATATT
1 AAAAACCCTAAACTTAAAAATATT
90571991 AAAAACCCTAAACTT
1 AAAAACCCTAAACTT
90572006 GGGAGAAAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.24
Consensus pattern (24 bp):
AAAAACCCTAAACTTAAAAATATT
Found at i:90579591 original size:15 final size:15
Alignment explanation
Indices: 90579571--90579609 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
90579561 TTTGTTTATA
90579571 AGTTACAAGTTAGAG
1 AGTTACAAGTTAGAG
90579586 AGTTACAAGTTAGAG
1 AGTTACAAGTTAGAG
90579601 AGTTACAAG
1 AGTTACAAG
90579610 GGTTAAGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.41, C:0.08, G:0.26, T:0.26
Consensus pattern (15 bp):
AGTTACAAGTTAGAG
Found at i:90585915 original size:37 final size:37
Alignment explanation
Indices: 90585874--90585947 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
90585864 TCCTTTACAC
*
90585874 ATAGGCCCAGAATATGGGCATTTGTTCTTGTGTTTGT
1 ATAGGCCCAGAATATAGGCATTTGTTCTTGTGTTTGT
90585911 ATAGGCCCAGAATATAGGCATTTGTTCTTGTGTTTGT
1 ATAGGCCCAGAATATAGGCATTTGTTCTTGTGTTTGT
90585948 GCCAAGTCTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.20, C:0.14, G:0.26, T:0.41
Consensus pattern (37 bp):
ATAGGCCCAGAATATAGGCATTTGTTCTTGTGTTTGT
Found at i:90592994 original size:39 final size:39
Alignment explanation
Indices: 90592940--90593018 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
90592930 TTTCCATAGG
90592940 GATCAGATAGGAATAACTTGGTTAAGTTGCTATTATGAA
1 GATCAGATAGGAATAACTTGGTTAAGTTGCTATTATGAA
90592979 GATCAGATAGGAATAACTTGGTTAAGTTGCTATTATGAA
1 GATCAGATAGGAATAACTTGGTTAAGTTGCTATTATGAA
90593018 G
1 G
90593019 TATGTGAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (39 bp):
GATCAGATAGGAATAACTTGGTTAAGTTGCTATTATGAA
Found at i:90603839 original size:2 final size:2
Alignment explanation
Indices: 90603834--90603865 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
90603824 TTCTTGAGGA
*
90603834 GT GT GT GT GT GT GT GT GT GT GT AT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
90603866 CCATTAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.03, C:0.00, G:0.47, T:0.50
Consensus pattern (2 bp):
GT
Found at i:90606616 original size:43 final size:42
Alignment explanation
Indices: 90606523--90606679 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 42
90606513 GGTTATCGAG
* *
90606523 ATGTGATTACATGA-AAGACCATGTCTGGGACATTGGCATTGT
1 ATGTGATTACAT-ATAAGACCATATCTGGGACATTGGCATCGT
* * *
90606565 ATTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 A-TGTGATTACATATAAGACCATATCTGGGACATTGGCATCG-T
* * * * * *
90606609 ATATGATTTCGTATAAGACCCTATCTGGGAAAGTGGCATCGAT
1 ATGTGATTACATATAAGACCATATCTGGGACATTGGCATCG-T
*
90606652 ATGTGATAACATATAAGACCATATCTGG
1 ATGTGATTACATATAAGACCATATCTGG
90606680 CATTGTATTG
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
42 1 0.01
43 93 0.97
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
ATGTGATTACATATAAGACCATATCTGGGACATTGGCATCGT
Found at i:90610329 original size:39 final size:39
Alignment explanation
Indices: 90610230--90610410 Score: 213
Period size: 39 Copynumber: 4.6 Consensus size: 39
90610220 AATGTTCGAG
90610230 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
90610269 TGATAT-CGGGCTAAGCCCGAAGGTAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
90610307 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
90610346 TGATA-CCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
90610385 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
90610411 GTTTGAACGA
Statistics
Matches: 121, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
38 45 0.37
39 58 0.48
40 18 0.15
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:90617041 original size:526 final size:526
Alignment explanation
Indices: 90616042--90617094 Score: 2088
Period size: 526 Copynumber: 2.0 Consensus size: 526
90616032 CTCCAAGAGA
90616042 TTTGCGAAGCTCAGAAACATGACAGTGATTTGCAAGCCAAAAGAGCCCAATGTGAATCGCGTATG
1 TTTGCGAAGCTCAGAAACATGACAGTGATTTGCAAGCCAAAAGAGCCCAATGTGAATCGCGTATG
90616107 GAATCAGATTTTCAGATTGCTTTCGATGAGTGTTTGATATTACAAGATAGGATTTGTGTTCCCAA
66 GAATCAGATTTTCAGATTGCTTTCGATGAGTGTTTGATATTACAAGATAGGATTTGTGTTCCCAA
90616172 AGATACTGAGTTAATTCAGAAGATTTTGCATGAGGCGCACAGTGGTTATTTGTCAGTTCACCCTG
131 AGATACTGAGTTAATTCAGAAGATTTTGCATGAGGCGCACAGTGGTTATTTGTCAGTTCACCCTG
90616237 GTAGTACAAAAATGGATAACGACTTGAAGAAATTGTATTGGTGGCCGAGTATGAAAAGAGATTTT
196 GTAGTACAAAAATGGATAACGACTTGAAGAAATTGTATTGGTGGCCGAGTATGAAAAGAGATTTT
90616302 TTGAGTTTGTTTCGAGATGTCTGATTTGTTAGCAAATAAAAATTGAACACCCAGTACCTTTGGGT
261 TTGAGTTTGTTTCGAGATGTCTGATTTGTTAGCAAATAAAAATTGAACACCCAGTACCTTTGGGT
90616367 TTACTTCATCCTGTGATGGTTCTCCAGTGGAAATGGGATAGAATCATTATGGACTTTGTAACGGG
326 TTACTTCATCCTGTGATGGTTCTCCAGTGGAAATGGGATAGAATCATTATGGACTTTGTAACGGG
90616432 TTTACCCTTGACACTGAAAAAGAAAGATGCCATTTGGGTGGTGGTTGATAGACTAACGAAGTCGG
391 TTTACCCTTGACACTGAAAAAGAAAGATGCCATTTGGGTGGTGGTTGATAGACTAACGAAGTCGG
*
90616497 CTCATTTTATTTCGGTACGTATCGATTACTCACTTGAGTAAGTTAGCTGATTTGTACATTGGTGA
456 CTCATTTTATTCCGGTACGTATCGATTACTCACTTGAGTAAGTTAGCTGATTTGTACATTGGTGA
90616562 AATTCT
521 AATTCT
90616568 TTTGCGAAGCTCAGAAACATGACAGTGATTTGCAAGCCAAAAGAGCCCAATGTGAATCGCGTATG
1 TTTGCGAAGCTCAGAAACATGACAGTGATTTGCAAGCCAAAAGAGCCCAATGTGAATCGCGTATG
90616633 GAATCAGATTTTCAGATTGCTTTCGATGAGTGTTTGATATTACAAGATAGGATTTGTGTTCCCAA
66 GAATCAGATTTTCAGATTGCTTTCGATGAGTGTTTGATATTACAAGATAGGATTTGTGTTCCCAA
90616698 AGATACTGAGTTAATTCAGAAGATTTTGCATGAGGCGCACAGTGGTTATTTGTCAGTTCACCCTG
131 AGATACTGAGTTAATTCAGAAGATTTTGCATGAGGCGCACAGTGGTTATTTGTCAGTTCACCCTG
90616763 GTAGTACAAAAATGGATAACGACTTGAAGAAATTGTATTGGTGGCCGAGTATGAAAAGAGATTTT
196 GTAGTACAAAAATGGATAACGACTTGAAGAAATTGTATTGGTGGCCGAGTATGAAAAGAGATTTT
90616828 TTGAGTTTGTTTCGAGATGTCTGATTTGTTAGCAAATAAAAATTGAACACCCAGTACCTTTGGGT
261 TTGAGTTTGTTTCGAGATGTCTGATTTGTTAGCAAATAAAAATTGAACACCCAGTACCTTTGGGT
*
90616893 TTACTTCATCCTGTGATGGTTCTCCAGTGGAAATGGGATAGAATCATTATGGACTTTGTGACGGG
326 TTACTTCATCCTGTGATGGTTCTCCAGTGGAAATGGGATAGAATCATTATGGACTTTGTAACGGG
90616958 TTTACCCTTGACACTGAAAAAGAAAGATGCCATTTGGGTGGTGGTTGATAGACTAACGAAGTCGG
391 TTTACCCTTGACACTGAAAAAGAAAGATGCCATTTGGGTGGTGGTTGATAGACTAACGAAGTCGG
90617023 CTCATTTTATTCCGGTACGTATCGATTACTCACTTGAGTAAGTTAGCTGATTTGTACATTGGTGA
456 CTCATTTTATTCCGGTACGTATCGATTACTCACTTGAGTAAGTTAGCTGATTTGTACATTGGTGA
90617088 AATTCT
521 AATTCT
90617094 T
1 T
90617095 AGATTGCATG
Statistics
Matches: 525, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
526 525 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (526 bp):
TTTGCGAAGCTCAGAAACATGACAGTGATTTGCAAGCCAAAAGAGCCCAATGTGAATCGCGTATG
GAATCAGATTTTCAGATTGCTTTCGATGAGTGTTTGATATTACAAGATAGGATTTGTGTTCCCAA
AGATACTGAGTTAATTCAGAAGATTTTGCATGAGGCGCACAGTGGTTATTTGTCAGTTCACCCTG
GTAGTACAAAAATGGATAACGACTTGAAGAAATTGTATTGGTGGCCGAGTATGAAAAGAGATTTT
TTGAGTTTGTTTCGAGATGTCTGATTTGTTAGCAAATAAAAATTGAACACCCAGTACCTTTGGGT
TTACTTCATCCTGTGATGGTTCTCCAGTGGAAATGGGATAGAATCATTATGGACTTTGTAACGGG
TTTACCCTTGACACTGAAAAAGAAAGATGCCATTTGGGTGGTGGTTGATAGACTAACGAAGTCGG
CTCATTTTATTCCGGTACGTATCGATTACTCACTTGAGTAAGTTAGCTGATTTGTACATTGGTGA
AATTCT
Found at i:90620880 original size:32 final size:32
Alignment explanation
Indices: 90620842--90620906 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
90620832 ATAGATTATG
* *
90620842 AAGGTTTATTGATAGATTTATTAGTTTTGTAA
1 AAGGTTTATTGATAGATTTACTAGTTTTCTAA
90620874 AAGGTTTATTGATAGATTTACTAGTTTTCTAA
1 AAGGTTTATTGATAGATTTACTAGTTTTCTAA
90620906 A
1 A
90620907 GTGATTTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.03, G:0.17, T:0.48
Consensus pattern (32 bp):
AAGGTTTATTGATAGATTTACTAGTTTTCTAA
Found at i:90621551 original size:24 final size:24
Alignment explanation
Indices: 90621492--90621565 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 24
90621482 GCAGACTCAC
* *
90621492 CTCAGCTCGTATGAGCTTAGCGATAT
1 CTCAGCTCGTAAGAGCTTA-CTAT-T
*
90621518 ATCAGCTCGTAAGAGCTTACTATT
1 CTCAGCTCGTAAGAGCTTACTATT
*
90621542 CTCAGCTCGTTAGAGCTTACTATT
1 CTCAGCTCGTAAGAGCTTACTATT
90621566 TTATCTCAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
24 23 0.53
25 3 0.07
26 17 0.40
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (24 bp):
CTCAGCTCGTAAGAGCTTACTATT
Found at i:90621582 original size:23 final size:24
Alignment explanation
Indices: 90621529--90621609 Score: 74
Period size: 23 Copynumber: 3.3 Consensus size: 24
90621519 TCAGCTCGTA
**
90621529 AGAGCTTACTATTCTCAGCTCGTT
1 AGAGCTTACTATTCTCAGCTCAAT
* *
90621553 AGAGCTTACTATT-TTATCTCAAT
1 AGAGCTTACTATTCTCAGCTCAAT
* * *
90621576 AGAGCTTACTGTCCATCAGCTCAAG
1 AGAGCTTACTATTC-TCAGCTCAAT
90621601 AGGAGCTTA
1 A-GAGCTTA
90621610 TTGATCATAG
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
23 17 0.38
24 13 0.29
25 8 0.18
26 7 0.16
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (24 bp):
AGAGCTTACTATTCTCAGCTCAAT
Found at i:90621779 original size:20 final size:20
Alignment explanation
Indices: 90621743--90621787 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
90621733 CAATTATACG
*
90621743 AATGAATTCCTGGTTATATA
1 AATGAATTCCTGATTATATA
*
90621763 AATGAATT-CTCGATTATATG
1 AATGAATTCCT-GATTATATA
90621783 AATGA
1 AATGA
90621788 GAAGGAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (20 bp):
AATGAATTCCTGATTATATA
Found at i:90622598 original size:30 final size:30
Alignment explanation
Indices: 90622564--90622631 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
90622554 TGTGTCTCTA
* *
90622564 CCGTGTGTGA-TTCACGGTCATGTTATACGG
1 CCGTGTGTGACAT-ACGATCATGTTATACGG
90622594 CCGTGTGTGACATACGATCATGTTATACGG
1 CCGTGTGTGACATACGATCATGTTATACGG
*
90622624 CTGTGTGT
1 CCGTGTGT
90622632 CCCTTGGTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 33 0.97
31 1 0.03
ACGTcount: A:0.18, C:0.19, G:0.29, T:0.34
Consensus pattern (30 bp):
CCGTGTGTGACATACGATCATGTTATACGG
Found at i:90627636 original size:39 final size:39
Alignment explanation
Indices: 90627592--90627742 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
90627582 TATGGTAACC
* * *
90627592 CGCACAA-AGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
90627631 TGCACAA-TGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
90627669 CGCCCAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
90627708 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
90627743 TCGAACATTC
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 23 0.23
39 79 0.77
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:90635563 original size:40 final size:40
Alignment explanation
Indices: 90635519--90635740 Score: 334
Period size: 40 Copynumber: 5.7 Consensus size: 40
90635509 GCTACTTGCT
90635519 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
90635559 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACT--CA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
90635597 CAAATGCCTTC-GGACTTAGCCCGG---TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
90635633 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
90635673 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
90635712 CAAATGCCTTCGGGACTTAGCTCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
90635741 CATCCGAATA
Statistics
Matches: 168, Mismatches: 5, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
34 8 0.05
36 13 0.08
37 26 0.15
38 14 0.08
39 34 0.20
40 72 0.43
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:90643480 original size:10 final size:9
Alignment explanation
Indices: 90643454--90643484 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
90643444 TTATGTGTTC
90643454 TTTATTTTA
1 TTTATTTTA
90643463 TTTATTTTA
1 TTTATTTTA
90643472 TTCTATTTTA
1 TT-TATTTTA
90643482 TTT
1 TTT
90643485 TTCACAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:90647645 original size:46 final size:46
Alignment explanation
Indices: 90647592--90647857 Score: 215
Period size: 46 Copynumber: 5.7 Consensus size: 46
90647582 TGGTTGAGCA
*
90647592 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAAGG
* * * *
90647638 TCCGAACTCATTGAGTTGAGTCCGAGTT--CGT-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAA--AGG
* * *
90647683 CATCCGAACTCGTTGAGTTGAG-CTCGAGTTCACTTATGGATACAAATG
1 --TCCGAACTCGTTGAGTTGAGTC-CGAGTTCACTTATAGATGCAAAGG
* * * *
90647731 TCTGAACTCG-TGAAGTTGAGTCCGAGTT--CGT-GAGATGTAACTAGG
1 TCCGAACTCGTTG-AGTTGAGTCCGAGTTCACTTATAGATGCAA--AGG
* * * *
90647776 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAAGG
* * *
90647824 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
90647858 GGGGCGGGTT
Statistics
Matches: 171, Mismatches: 31, Indels: 36
0.72 0.13 0.15
Matches are distributed among these distances:
43 12 0.07
44 4 0.02
45 6 0.04
46 80 0.47
47 50 0.29
48 6 0.04
49 3 0.02
50 10 0.06
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAAGG
Found at i:90647704 original size:47 final size:47
Alignment explanation
Indices: 90647589--90647806 Score: 195
Period size: 47 Copynumber: 4.7 Consensus size: 47
90647579 GGATGGTTGA
* * * *
90647589 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAGATGTAACTAG
*
90647637 G--TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
90647682 GCATCCGAACTCGTTGAGTTGAG-CTCGAGTTCACT--TATGGATACAAAT
1 GCATCCGAACTCGTTGAGTTGAGTC-CGAGTTC-GTGAGATGTA-AC-TAG
*
90647730 G--TCTGAACTCG-TGAAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTG-AGTTGAGTCCGAGTTCGTGAGATGTAACTAG
90647775 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
90647807 ATTTATGGAT
Statistics
Matches: 137, Mismatches: 18, Indels: 31
0.74 0.10 0.17
Matches are distributed among these distances:
43 7 0.05
44 2 0.01
45 7 0.05
46 57 0.42
47 58 0.42
48 6 0.04
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:90647748 original size:93 final size:93
Alignment explanation
Indices: 90647589--90647852 Score: 381
Period size: 93 Copynumber: 2.8 Consensus size: 93
90647579 GGATGGTTGA
* * *
90647589 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGTCCGAACTCAGTGAGT
90647654 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
90647682 GCATCCGAACTCGTTGAGTTGAG-CTCGAGTTCACTTATGGATACAAATGTCTGAACTC-GTGAA
1 GCATCCGAACTCGTTGAGTTGAGTC-CGAGTTCACTTATGGATACAAATGTCCGAACTCAGTG-A
90647745 GTTGAGTCCGAGTTCGTGAGATGTAACTAG
64 GTTGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * * *
90647775 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTC-GTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGTCCGAACTCAG-TGAG
*
90647839 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
90647853 ACTTAGGGGC
Statistics
Matches: 155, Mismatches: 12, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
92 3 0.02
93 149 0.96
94 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGTCCGAACTCAGTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:90648119 original size:19 final size:20
Alignment explanation
Indices: 90648082--90648119 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
90648072 ATAAGGTGGT
90648082 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
90648102 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
90648120 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:90648844 original size:19 final size:20
Alignment explanation
Indices: 90648809--90648846 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
90648799 ATAAGGTGGT
90648809 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
90648829 AAGAT-ATGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
90648847 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:90649265 original size:727 final size:727
Alignment explanation
Indices: 90647870--90649327 Score: 2853
Period size: 727 Copynumber: 2.0 Consensus size: 727
90647860 GGCGGGTTAC
*
90647870 ATGATTTCTTGATTACATATGTGGCACTTATGTGCAAATTATCCATGTATCTGAGTTATATTCCG
1 ATGATTTCTTGATTACATATGTGGCACTTATGTGCAAATTATCCATGTATCCGAGTTATATTCCG
90647935 ATGTGTTCAACGGGTGAAATTTCTAGTTTAATGGAAGAGCACTTAAGATATAAGTGACGTTTTGG
66 ATGTGTTCAACGGGTGAAATTTCTAGTTTAATGGAAGAGCACTTAAGATATAAGTGACGTTTTGG
90648000 GTAAGTGTTGTGAAATGGACACTTTGGACAGGTATGTTCTTAACCCTCGGGTTGAAAATAGATAC
131 GTAAGTGTTGTGAAATGGACACTTTGGACAGGTATGTTCTTAACCCTCGGGTTGAAAATAGATAC
*
90648065 AACAACGATAAGGTGGTAAGATGATGAATGATGTTTAAAGATGTGATATATGTTTTGGTGGTACC
196 AACAACGATAAGGTGGTAAGATGATGAATGATGTTTAAAGATATGATATATGTTTTGGTGGTACC
90648130 ATGCTAAAGTTGTTTGGTATATTTGTATTGTTATGTTACTTGTTATTTACATATGAACTTACTAA
261 ATGCTAAAGTTGTTTGGTATATTTGTATTGTTATGTTACTTGTTATTTACATATGAACTTACTAA
*
90648195 GCATTTATGCTTACTCCTTTCTTTTCATTCACTGTAGTTTTGAACAAGCCGGCTCAGGAATCGGG
326 GCATTTATGCTTACTCCTTCCTTTTCATTCACTGTAGTTTTGAACAAGCCGGCTCAGGAATCGGG
*
90648260 ACAGGTCGAAAGTTTGATCACACTATCCAAAGGACTTTTATCTTGGTAAATGGCTTGTACAACTA
391 ACAGGTCGAAAGTTCGATCACACTATCCAAAGGACTTTTATCTTGGTAAATGGCTTGTACAACTA
90648325 CTTAAGTATGGCATGTATAGCAATATACCTATTTTGTGTAAATAATTTTATGATATGGCCATCTT
456 CTTAAGTATGGCATGTATAGCAATATACCTATTTTGTGTAAATAATTTTATGATATGGCCATCTT
90648390 TGGTTGAGAAAATGTTTGATATTGATAAGTCATGGTGATGGCTAATTTAGATCATGTTTGATATC
521 TGGTTGAGAAAATGTTTGATATTGATAAGTCATGGTGATGGCTAATTTAGATCATGTTTGATATC
*
90648455 ATGGAAGTTTAACAGGTTATCTAGTTCATAAAAATTCATGGAAAGATGAAACTTGCCTTAAAATA
586 ATGGAAGTTTAACAGGTTATCTAGTTCATAAAAATTCATGGAAAGATGAAACTTGCCTTAAAACA
90648520 GAATATTGTTGCAGCAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATAGAACTAAAT
651 GAATATTGTTGCAGCAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATAGAACTAAAT
90648585 GATGAGTAAGTT
716 GATGAGTAAGTT
90648597 ATGATTTCTTGATTACATATGTGGCACTTATGTGCAAATTATCCATGTATCCGAGTTATATTCCG
1 ATGATTTCTTGATTACATATGTGGCACTTATGTGCAAATTATCCATGTATCCGAGTTATATTCCG
90648662 ATGTGTTCAACGGGTGAAATTTCTAGTTTAATGGAAGAGCACTTAAGATATAAGTGACGTTTTGG
66 ATGTGTTCAACGGGTGAAATTTCTAGTTTAATGGAAGAGCACTTAAGATATAAGTGACGTTTTGG
*
90648727 GTAAGTGTTGTGAAATGGACACTTTGGACAGGTATGTTCTTAACCCTCGGTTTGAAAATAGATAC
131 GTAAGTGTTGTGAAATGGACACTTTGGACAGGTATGTTCTTAACCCTCGGGTTGAAAATAGATAC
90648792 AACAACGATAAGGTGGTAAGATGATGAATGATGTTTAAAGATATGATATATGTTTTGGTGGTACC
196 AACAACGATAAGGTGGTAAGATGATGAATGATGTTTAAAGATATGATATATGTTTTGGTGGTACC
90648857 ATGCTAAAGTTGTTTGGTATATTTGTATTGTTATGTTACTTGTTATTTACATATGAACTTACTAA
261 ATGCTAAAGTTGTTTGGTATATTTGTATTGTTATGTTACTTGTTATTTACATATGAACTTACTAA
90648922 GCATTTATGCTTACTCCTTCCTTTTCATTCACTGTAGTTTTGAACAAGCCGGCTCAGGAATCGGG
326 GCATTTATGCTTACTCCTTCCTTTTCATTCACTGTAGTTTTGAACAAGCCGGCTCAGGAATCGGG
90648987 ACAGGTCGAAAGTTCGATCACACTATCCAAAGGACTTTTATCTTGGTAAATGGCTTGTACAACTA
391 ACAGGTCGAAAGTTCGATCACACTATCCAAAGGACTTTTATCTTGGTAAATGGCTTGTACAACTA
*
90649052 CTTAAGTATGGCATGTATAGCAATATACCTATTTTGTGTAAATAATTTTATGATATGGCCATGTT
456 CTTAAGTATGGCATGTATAGCAATATACCTATTTTGTGTAAATAATTTTATGATATGGCCATCTT
90649117 TGGTTGAGAAAATGTTTGATATTGATAAGTCATGGTGATGGCTAATTTAGATCATGTTTGATATC
521 TGGTTGAGAAAATGTTTGATATTGATAAGTCATGGTGATGGCTAATTTAGATCATGTTTGATATC
90649182 ATGGAAGTTTAACAGGTTATCTAGTTCATAAAAATTCATGGAAAGATGAAACTTGCCTTAAAACA
586 ATGGAAGTTTAACAGGTTATCTAGTTCATAAAAATTCATGGAAAGATGAAACTTGCCTTAAAACA
90649247 GAATATTGTTGCAGCAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATAGAACTAAAT
651 GAATATTGTTGCAGCAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATAGAACTAAAT
90649312 GATGAGTAAGTT
716 GATGAGTAAGTT
90649324 ATGA
1 ATGA
90649328 AATTGAAGCT
Statistics
Matches: 724, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
727 724 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (727 bp):
ATGATTTCTTGATTACATATGTGGCACTTATGTGCAAATTATCCATGTATCCGAGTTATATTCCG
ATGTGTTCAACGGGTGAAATTTCTAGTTTAATGGAAGAGCACTTAAGATATAAGTGACGTTTTGG
GTAAGTGTTGTGAAATGGACACTTTGGACAGGTATGTTCTTAACCCTCGGGTTGAAAATAGATAC
AACAACGATAAGGTGGTAAGATGATGAATGATGTTTAAAGATATGATATATGTTTTGGTGGTACC
ATGCTAAAGTTGTTTGGTATATTTGTATTGTTATGTTACTTGTTATTTACATATGAACTTACTAA
GCATTTATGCTTACTCCTTCCTTTTCATTCACTGTAGTTTTGAACAAGCCGGCTCAGGAATCGGG
ACAGGTCGAAAGTTCGATCACACTATCCAAAGGACTTTTATCTTGGTAAATGGCTTGTACAACTA
CTTAAGTATGGCATGTATAGCAATATACCTATTTTGTGTAAATAATTTTATGATATGGCCATCTT
TGGTTGAGAAAATGTTTGATATTGATAAGTCATGGTGATGGCTAATTTAGATCATGTTTGATATC
ATGGAAGTTTAACAGGTTATCTAGTTCATAAAAATTCATGGAAAGATGAAACTTGCCTTAAAACA
GAATATTGTTGCAGCAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATAGAACTAAAT
GATGAGTAAGTT
Found at i:90650503 original size:2 final size:2
Alignment explanation
Indices: 90650496--90650527 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
90650486 CTTAACCGGT
90650496 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
90650528 AATGTGTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:90652857 original size:8 final size:8
Alignment explanation
Indices: 90652844--90652889 Score: 92
Period size: 8 Copynumber: 5.8 Consensus size: 8
90652834 ATACTTAAGT
90652844 ATAATATA
1 ATAATATA
90652852 ATAATATA
1 ATAATATA
90652860 ATAATATA
1 ATAATATA
90652868 ATAATATA
1 ATAATATA
90652876 ATAATATA
1 ATAATATA
90652884 ATAATA
1 ATAATA
90652890 CATAAAGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:90652925 original size:20 final size:20
Alignment explanation
Indices: 90652893--90652930 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
90652883 AATAATACAT
90652893 AAAGTAAATAAAAGAAAGTA
1 AAAGTAAATAAAAGAAAGTA
90652913 AAAG-AAATAAAAAGAAAG
1 AAAGTAAAT-AAAAGAAAG
90652931 AAAGAACAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (20 bp):
AAAGTAAATAAAAGAAAGTA
Found at i:90653693 original size:27 final size:28
Alignment explanation
Indices: 90653661--90653718 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
90653651 AGTATGTGTA
*
90653661 TGATTGAAA-AGTGTATTGAATTGG-AAT
1 TGATTGAAATAGTATATTG-ATTGGAAAT
*
90653688 TGATTGAAATTGTATATTGATTGGAAAT
1 TGATTGAAATAGTATATTGATTGGAAAT
90653716 TGA
1 TGA
90653719 ATTATGTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 14 0.52
28 13 0.48
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (28 bp):
TGATTGAAATAGTATATTGATTGGAAAT
Found at i:90655665 original size:12 final size:12
Alignment explanation
Indices: 90655648--90655689 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
90655638 TTCTCAAATC
90655648 TTAAATAATATA
1 TTAAATAATATA
90655660 TTAAATAATATA
1 TTAAATAATATA
*
90655672 TTAACATAA-ATC
1 TTAA-ATAATATA
90655684 TTAAAT
1 TTAAAT
90655690 GATGTATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 2 0.07
12 22 0.79
13 4 0.14
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (12 bp):
TTAAATAATATA
Found at i:90656627 original size:46 final size:47
Alignment explanation
Indices: 90656560--90656648 Score: 119
Period size: 46 Copynumber: 1.9 Consensus size: 47
90656550 TAGATTATGA
* *
90656560 TTTTTTTTAGTTTTTATAATTTTAT-AAATTTTAATA-TTTTTGAGT
1 TTTTTTTTAGTTTTAATAATTTTATGAAATTTAAATAGTTTTTGAGT
* *
90656605 TTTTTTTTGGATTTTAATAATTTTTTGAAATTTAAATAGTTTTT
1 TTTTTTTTAG-TTTTAATAATTTTATGAAATTTAAATAGTTTTT
90656649 AACATGTGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 9 0.24
46 13 0.35
47 10 0.27
48 5 0.14
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (47 bp):
TTTTTTTTAGTTTTAATAATTTTATGAAATTTAAATAGTTTTTGAGT
Found at i:90659341 original size:43 final size:43
Alignment explanation
Indices: 90659276--90659416 Score: 194
Period size: 43 Copynumber: 3.3 Consensus size: 43
90659266 CGCTATATGT
* * *
90659276 AACGCCGCTAAAGACCAGGACTTATAGTGGTGCTTT-TCTAAAA
1 AACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTCT-TAAAA
* *
90659319 AACGCTGCTAAATACCATGACTTATAGCGGCGCTTTCTTAAAA
1 AACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTCTTAAAA
* *
90659362 AACGCCGCTAAAGACCATGACTTCTAGCGACGCTTTCTTAAAA
1 AACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTCTTAAAA
*
90659405 AACGCCACTAAA
1 AACGCCGCTAAA
90659417 AGTCTTCTTT
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 86 0.99
44 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
AACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTCTTAAAA
Found at i:90659453 original size:40 final size:41
Alignment explanation
Indices: 90659343--90659497 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 41
90659333 CCATGACTTA
* * * * *
90659343 TAGCGGCGCTTTCTTAAAAAACGCCGCT-AAAGACCATGACTT
1 TAGCGGCG-TTTTTTAAAAAACGCCACTAAAAG-TCTTGTCTT
* *
90659385 CTAGCGACGCTTTCTTAAAAAACGCCACTAAAAGTC-T-TCTT
1 -TAGCGGCG-TTTTTTAAAAAACGCCACTAAAAGTCTTGTCTT
* *
90659426 TAGTGTCGTTTTTTAAAAAAGCGCCACTAAAAGTCTTGGTCTT
1 TAGCGGCGTTTTTTAAAAAA-CGCCACTAAAAGTCTT-GTCTT
90659469 TAGCGGCGTTTTTTAAAAAACGCCACTAA
1 TAGCGGCGTTTTTTAAAAAACGCCACTAA
90659498 TTTGCCCAGT
Statistics
Matches: 98, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
39 11 0.11
40 20 0.20
41 4 0.04
42 10 0.10
43 49 0.50
44 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (41 bp):
TAGCGGCGTTTTTTAAAAAACGCCACTAAAAGTCTTGTCTT
Found at i:90662928 original size:40 final size:40
Alignment explanation
Indices: 90662852--90662932 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
90662842 CGCCACTATA
* *
90662852 GCTCGGTCTATAGCGACGCTTCTCTAAAAACACCGCTAAT
1 GCTCGATCTATAGCGACGCTTCTCGAAAAACACCGCTAAT
* * * * *
90662892 GCTCGATCTTTAGCGACGTTTTTCGAAAAGCGCCGCTAAT
1 GCTCGATCTATAGCGACGCTTCTCGAAAAACACCGCTAAT
90662932 G
1 G
90662933 AACTGAATCT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
GCTCGATCTATAGCGACGCTTCTCGAAAAACACCGCTAAT
Found at i:90663037 original size:23 final size:24
Alignment explanation
Indices: 90663007--90663054 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
90662997 CTAATGCTCG
90663007 ATTTTTAGCGGC-ATTTCTATTCA
1 ATTTTTAGCGGCGATTTCTATTCA
* *
90663030 ATTTTTAGTGGCGTTTTCTATTCA
1 ATTTTTAGCGGCGATTTCTATTCA
90663054 A
1 A
90663055 ACGCCGCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.50
Consensus pattern (24 bp):
ATTTTTAGCGGCGATTTCTATTCA
Found at i:90664449 original size:24 final size:22
Alignment explanation
Indices: 90664406--90664449 Score: 52
Period size: 24 Copynumber: 1.9 Consensus size: 22
90664396 ATGCTTGTGT
*
90664406 ACAGATATCAGATATACATATA
1 ACAGATATCAGACATACATATA
*
90664428 ACAGAATAGTCAGACATGCATA
1 ACAG-ATA-TCAGACATACATA
90664450 ATAGTGTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 3 0.17
24 11 0.61
ACGTcount: A:0.48, C:0.16, G:0.14, T:0.23
Consensus pattern (22 bp):
ACAGATATCAGACATACATATA
Found at i:90673906 original size:47 final size:46
Alignment explanation
Indices: 90673790--90673919 Score: 156
Period size: 47 Copynumber: 2.8 Consensus size: 46
90673780 TCACTTGTGT
* * *
90673790 GAGCTAGTGTAAGACATGCCTGGGACATGCATCGGCCACATTACGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACAA
* *
90673836 GAGCTAGTGTAAGACCATATCTGGGACATGGCATCTG-CA-ATGAGACAA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAT--GACAA
*
90673884 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
90673920 TTCGAGATGT
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
46 22 0.31
47 27 0.38
48 22 0.31
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACAA
Found at i:90673959 original size:32 final size:32
Alignment explanation
Indices: 90673899--90673961 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
90673889 AGTGTAAGAC
*
90673899 ATGTCTGGGACATGCATCGGCTTCGAGATGTA
1 ATGTCTGGGACATGCATCGACTTCGAGATGTA
90673931 ATGTCTGGGACATGCATCGACTAT-GAGATGT
1 ATGTCTGGGACATGCATCGACT-TCGAGATGT
90673962 GTCAGTGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 28 0.97
33 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (32 bp):
ATGTCTGGGACATGCATCGACTTCGAGATGTA
Found at i:90680993 original size:56 final size:57
Alignment explanation
Indices: 90680894--90681003 Score: 136
Period size: 56 Copynumber: 1.9 Consensus size: 57
90680884 TAATGTTTGA
* *
90680894 CAAGTTTAGATATCAAATTGGAAAAAAAAATGCAGGTACCAAATT-AGAAAAAAGTT
1 CAAGTTTAGATACCAAATTGGAAAAAAAAATGCAGGAACCAAATTAAGAAAAAAGTT
* * *
90680950 CAAGTTTAGGTACCAAATT-GAATAAAAAATAT-TAGGAATCAAATTAAGAAAAAA
1 CAAGTTTAGATACCAAATTGGAA-AAAAAA-ATGCAGGAACCAAATTAAGAAAAAA
90681004 TGTTGTGTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
55 3 0.07
56 33 0.72
57 10 0.22
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.24
Consensus pattern (57 bp):
CAAGTTTAGATACCAAATTGGAAAAAAAAATGCAGGAACCAAATTAAGAAAAAAGTT
Found at i:90689327 original size:29 final size:30
Alignment explanation
Indices: 90689285--90689346 Score: 117
Period size: 29 Copynumber: 2.1 Consensus size: 30
90689275 TTTTATACCG
90689285 GAATAACATTGACTACATTAAAAAATT-CT
1 GAATAACATTGACTACATTAAAAAATTGCT
90689314 GAATAACATTGACTACATTAAAAAATTGCT
1 GAATAACATTGACTACATTAAAAAATTGCT
90689344 GAA
1 GAA
90689347 ATCCAGACTC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 27 0.84
30 5 0.16
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (30 bp):
GAATAACATTGACTACATTAAAAAATTGCT
Found at i:90692571 original size:2 final size:2
Alignment explanation
Indices: 90692564--90692588 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
90692554 AAACCATTTA
90692564 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
90692589 AAGTTTATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:90692799 original size:14 final size:14
Alignment explanation
Indices: 90692748--90692809 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
90692738 CTCTATCCTA
90692748 TAAACAC-TAACCAC
1 TAAACACTTAACC-C
*
90692762 TAAACCCTTAACCC
1 TAAACACTTAACCC
* *
90692776 TTAACCCTTAACCC
1 TAAACACTTAACCC
* *
90692790 CAAACACTTACACCT
1 TAAACACTTA-ACCC
90692805 TAAAC
1 TAAAC
90692810 TCCAACCTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
14 27 0.69
15 12 0.31
ACGTcount: A:0.40, C:0.39, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACACTTAACCC
Found at i:90692799 original size:21 final size:21
Alignment explanation
Indices: 90692749--90692807 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
90692739 TCTATCCTAT
* *
90692749 AAACAC-TAACCACTAAACCCT
1 AAACACTTAACC-CTTAACCCC
* *
90692770 TAACCCTTAACCCTTAACCCC
1 AAACACTTAACCCTTAACCCC
90692791 AAACACTT-ACACCTTAA
1 AAACACTTAAC-CCTTAA
90692808 ACTCCAACCT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
20 2 0.07
21 23 0.77
22 5 0.17
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (21 bp):
AAACACTTAACCCTTAACCCC
Found at i:90692835 original size:14 final size:13
Alignment explanation
Indices: 90692748--90692835 Score: 52
Period size: 14 Copynumber: 6.3 Consensus size: 13
90692738 CTCTATCCTA
*
90692748 TAAACACTAACCAC
1 TAAACCCTAACC-C
90692762 TAAACCCTTAACCC
1 TAAACCC-TAACCC
*
90692776 TTAACCCTTAACCC
1 TAAACCC-TAACCC
* * *
90692790 CAAACACTTACACCT
1 TAAAC-CCTA-ACCC
*
90692805 TAAACTCC-AACCT
1 TAAAC-CCTAACCC
90692818 TAAACCCTAAACCC
1 TAAACCCT-AACCC
90692832 TAAA
1 TAAA
90692836 ACATAATCTC
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
12 2 0.03
13 9 0.15
14 34 0.58
15 14 0.24
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAACCCTAACCC
Found at i:90692933 original size:14 final size:14
Alignment explanation
Indices: 90692890--90692941 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
90692880 AATTAACTCC
* *
90692890 TAAACCTTAAACCC
1 TAAACCATAAACCT
* * *
90692904 TAAATCATATATCT
1 TAAACCATAAACCT
90692918 TAAACCATAAACCT
1 TAAACCATAAACCT
*
90692932 TAAACTATAA
1 TAAACCATAA
90692942 TGATAATTAA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (14 bp):
TAAACCATAAACCT
Found at i:90693217 original size:40 final size:41
Alignment explanation
Indices: 90693163--90693263 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 41
90693153 AGCGGCGCTT
90693163 TCTGGTTTTTAGCGGCATTTTACCGAAAGCGCCACTATTGC
1 TCTGGTTTTTAGCGGCATTTTACCGAAAGCGCCACTATTGC
* * * *
90693204 TTTGG-TTTTAGCGGCGTTTTACGGAAAGCGCCGCTATTGC
1 TCTGGTTTTTAGCGGCATTTTACCGAAAGCGCCACTATTGC
*
90693244 TCTGGTTTTTAGTGGCATTT
1 TCTGGTTTTTAGCGGCATTT
90693264 ATTGCTCTGT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
40 36 0.69
41 16 0.31
ACGTcount: A:0.16, C:0.20, G:0.26, T:0.39
Consensus pattern (41 bp):
TCTGGTTTTTAGCGGCATTTTACCGAAAGCGCCACTATTGC
Found at i:90694741 original size:46 final size:45
Alignment explanation
Indices: 90694611--90694778 Score: 144
Period size: 46 Copynumber: 3.6 Consensus size: 45
90694601 ATTGTAGGCT
* * **
90694611 AGTGTAAGACGTGTCTGGGACATGCATCGGCCATATTATGA-G-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CAT-CGA-GACGTAGCC
* ** *
90694657 TGTGTAAGACCATGTCAAGGACATGGCATCAGCATCGAGACAAGT-GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAGAC--GTAGCC
* *
90694705 AGTGTAAGACATGTCTGGGACATACATCAGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACGT-AGCC
*
90694751 AGTGTAAGACATGTTTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
90694779 GGCTGAGAGA
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 51 0.52
47 26 0.27
48 17 0.17
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACGTAGCC
Found at i:90694800 original size:46 final size:45
Alignment explanation
Indices: 90694611--90694829 Score: 135
Period size: 46 Copynumber: 4.7 Consensus size: 45
90694601 ATTGTAGGCT
* * **
90694611 AGTGTAAGACGTGTCTGGGACATGCATCGGC-C-ATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGA-CGT-A-AGCC
* ** * *
90694657 TGTGTAAGACCATGTCAAGGACATGGCATCAGCATCGAGAC--AAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGACGTAA--GCC
* *
90694705 AGTGTAAGACATGTCTGGGACATACATCAGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTCGAGACGTAAGCC
* *
90694751 AGTGTAAGACATGTTTGGGACATGCATCGGCT-GAGA-GATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGACG-T-A-AGCC
* *
90694797 AGTGTAAGACCATATCTGGGATATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
90694830 ACCTTACCCC
Statistics
Matches: 136, Mismatches: 22, Indels: 28
0.73 0.12 0.15
Matches are distributed among these distances:
43 1 0.01
44 5 0.04
45 4 0.03
46 60 0.44
47 36 0.26
48 27 0.20
50 1 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGACGTAAGCC
Found at i:90696692 original size:12 final size:12
Alignment explanation
Indices: 90696675--90696700 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
90696665 AAAATAGGGC
90696675 TTTAGCAGCGTT
1 TTTAGCAGCGTT
90696687 TTTAGCAGCGTT
1 TTTAGCAGCGTT
90696699 TT
1 TT
90696701 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46
Consensus pattern (12 bp):
TTTAGCAGCGTT
Found at i:90696811 original size:41 final size:40
Alignment explanation
Indices: 90696724--90696931 Score: 181
Period size: 41 Copynumber: 5.1 Consensus size: 40
90696714 GCAAAAATTG
* ** * *
90696724 TAAAACACATAGCAATAGCGGCG-TTTTACCAAAAATGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTT-GGAAAAACGCCGC
*
90696765 T-AAAACAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTT-G-GAAAAACGCCGC
* * *
90696805 GAAAAACAAAG-AATTAGCGGCGCTTTTGGCAAAACGCCGC
1 TAAAAACAGAGCAA-TAGCGGCGCTTTTGGAAAAACGCCGC
* * *
90696845 TAAAAACCAGGGCATTAGCGGCGCTTTTGGCAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTGGAAAAACGCCGC
* * * *
90696886 TAAAAACCAGAGCATTAGCGGCACTATTGGCAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTGGAAAAACGCCGC
90696927 TAAAA
1 TAAAA
90696932 GTCATATAAC
Statistics
Matches: 145, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
39 21 0.14
40 29 0.20
41 90 0.62
42 5 0.03
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.17
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTGGAAAAACGCCGC
Found at i:90696850 original size:40 final size:41
Alignment explanation
Indices: 90696795--90696931 Score: 213
Period size: 41 Copynumber: 3.4 Consensus size: 41
90696785 GTTTTAGTAA
* * *
90696795 AAAACGCCGCGAAAAA-CAAAGAATTAGCGGCGCTTTTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
*
90696835 AAAACGCCGCTAAAAACCAGGGCATTAGCGGCGCTTTTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
* *
90696876 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTATTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
90696917 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
90696932 GTCATATAAC
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 15 0.17
41 74 0.83
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
Found at i:90696867 original size:82 final size:82
Alignment explanation
Indices: 90696778--90696931 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 82
90696768 AACAGAGCAA
* *
90696778 TAGCGGCG-TTTTAGTAAAAAACGCCGCGAAAAA-CAAAGAATTAGCGGCGCTTTTGGCAAAACG
1 TAGCGGCGCTTTT-G-AAAAAACGCCGCGAAAAACCAAAGAATTAGCGGCACTATTGGCAAAACG
90696841 CCGCTAAAAACCAGGGCAT
64 CCGCTAAAAACCAGGGCAT
** * * *
90696860 TAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTATTGGCAAAACGCC
1 TAGCGGCGCTTTTGAAAAAACGCCGCGAAAAACCAAAGAATTAGCGGCACTATTGGCAAAACGCC
90696925 GCTAAAA
66 GCTAAAA
90696932 GTCATATAAC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
81 15 0.24
82 44 0.70
83 4 0.06
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (82 bp):
TAGCGGCGCTTTTGAAAAAACGCCGCGAAAAACCAAAGAATTAGCGGCACTATTGGCAAAACGCC
GCTAAAAACCAGGGCAT
Found at i:90697123 original size:21 final size:21
Alignment explanation
Indices: 90697099--90697179 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
90697089 ATAGTTTATG
*
90697099 GTTTATGGTTTAAGATATATA
1 GTTTAGGGTTTAAGATATATA
* *
90697120 GTTTAGGGTTTAAGATTTTTGA
1 GTTTAGGGTTTAAGATATAT-A
* *
90697142 GTTAACTATGGTTTAAGATATATG
1 GTT---TAGGGTTTAAGATATATA
90697166 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
90697180 GTTTATGAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
21 27 0.56
22 4 0.08
24 3 0.06
25 14 0.29
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (21 bp):
GTTTAGGGTTTAAGATATATA
Found at i:90697170 original size:46 final size:46
Alignment explanation
Indices: 90697102--90697195 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
90697092 GTTTATGGTT
*
90697102 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTTTGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTATGAGTTAAC
* *
90697148 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTATGAGTTAAC
90697194 TA
1 TA
90697196 GTATTTGAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.45
Consensus pattern (46 bp):
TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTATGAGTTAAC
Found at i:90697831 original size:23 final size:23
Alignment explanation
Indices: 90697770--90697832 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
90697760 TAATATCCTA
*
90697770 TATATGTAATTGTATTTAAATTT
1 TATATGTAATTGTATTAAAATTT
*
90697793 T-TAATTTATATT-TATTAAAATTT
1 TAT-ATGTA-ATTGTATTAAAATTT
90697816 TATATGTAATTGTATTA
1 TATATGTAATTGTATTA
90697833 GCATTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
22 4 0.12
23 25 0.76
24 4 0.12
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (23 bp):
TATATGTAATTGTATTAAAATTT
Found at i:90702201 original size:43 final size:37
Alignment explanation
Indices: 90702105--90702175 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
90702095 TTAATTTTTA
* * *
90702105 TGACATTTAGCGGCGTTTTTTGGAAAAGTGCCGCGCC
1 TGACATTTAGCGGCGTTTGTGGGAAAAGCGCCGCGCC
*
90702142 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TGACATTTAGCGGCGTTTGTGGGAAAAGCGCCGC
90702176 TAAAGGTCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.18, C:0.23, G:0.32, T:0.27
Consensus pattern (37 bp):
TGACATTTAGCGGCGTTTGTGGGAAAAGCGCCGCGCC
Found at i:90709891 original size:32 final size:32
Alignment explanation
Indices: 90709850--90709915 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
90709840 ATTTTCTTAT
90709850 CAAAATTTTCATATGACATTCCTATTACAATG
1 CAAAATTTTCATATGACATTCCTATTACAATG
90709882 CAAAATTTTCATATGACATTCCTATTACAATG
1 CAAAATTTTCATATGACATTCCTATTACAATG
90709914 CA
1 CA
90709916 TACCATGCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.36
Consensus pattern (32 bp):
CAAAATTTTCATATGACATTCCTATTACAATG
Found at i:90711725 original size:48 final size:48
Alignment explanation
Indices: 90711633--90711944 Score: 299
Period size: 48 Copynumber: 6.5 Consensus size: 48
90711623 GCTAGTTAAA
** **
90711633 ACCATGTCTGGGACATGGCATCAACC-ACTTTATGAGAGCCAGTGTAAG
1 ACCATGTCTGGGACATGGCATCGGCCTA-GATATGAGAGCCAGTGTAAG
** * * * *
90711681 ACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTA-CTAGTGTAAA
1 ACCATGTCTGGGACATGGCATCGGCCTAGATATGAG-AGCCAGTGTAAG
* * * * *
90711729 ACCATGTCTAGGAGATGGCATCAGCC-ACATTATGAGAGCCAGTGTAAA
1 ACCATGTCTGGGACATGGCATCGGCCTAGA-TATGAGAGCCAGTGTAAG
* * * *
90711777 ACCATGTCTGGTACATGGCATCGACC-ACATTATGAGAGACAGTGTAAG
1 ACCATGTCTGGGACATGGCATCGGCCTAGA-TATGAGAGCCAGTGTAAG
* * * * *
90711825 ACCATGTCTGGGACATGGCATCGGCATTGACACGAGAGCTAGTGTAAG
1 ACCATGTCTGGGACATGGCATCGGCCTAGATATGAGAGCCAGTGTAAG
* * * * *
90711873 ACCATATCTGGGACAAGGCATCGGCCTCGACATGTGAGCCAGTGTAAG
1 ACCATGTCTGGGACATGGCATCGGCCTAGATATGAGAGCCAGTGTAAG
90711921 ACCATGTCTGGGACATGGCATCGG
1 ACCATGTCTGGGACATGGCATCGG
90711945 TAATTTACCC
Statistics
Matches: 215, Mismatches: 44, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
47 2 0.01
48 211 0.98
49 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
ACCATGTCTGGGACATGGCATCGGCCTAGATATGAGAGCCAGTGTAAG
Found at i:90711893 original size:144 final size:144
Alignment explanation
Indices: 90711629--90711943 Score: 427
Period size: 144 Copynumber: 2.2 Consensus size: 144
90711619 GTGTGCTAGT
* * *
90711629 TAAAACCATGTCTGGGACATGGCATCAACCACTTTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 TAAAACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATGTCTGGGA
** * * * * * *
90711694 CATGGCATCGGTGTTGATATGTGTACTAGTGTAAAACCATGTCTAGGAGATGGCATCAGCCAC-A
66 CATGGCATCGGCATTGACACGAGTACTAGTGTAAAACCATATCTAGGACAAGGCATCAGCCACGA
*
90711758 TTATGAGAGCCAGTG
131 -CATGAGAGCCAGTG
*
90711773 TAAAACCATGTCTGGTACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATGTCTGGGA
1 TAAAACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATGTCTGGGA
* * * *
90711838 CATGGCATCGGCATTGACACGAG-AGCTAGTGTAAGACCATATCTGGGACAAGGCATCGGCCTCG
66 CATGGCATCGGCATTGACACGAGTA-CTAGTGTAAAACCATATCTAGGACAAGGCATCAGCCACG
*
90711902 ACATGTGAGCCAGTG
130 ACATGAGAGCCAGTG
*
90711917 TAAGACCATGTCTGGGACATGGCATCG
1 TAAAACCATGTCTGGGACATGGCATCG
90711944 GTAATTTACC
Statistics
Matches: 149, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
143 1 0.01
144 147 0.99
145 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (144 bp):
TAAAACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCATTGACACGAGTACTAGTGTAAAACCATATCTAGGACAAGGCATCAGCCACGA
CATGAGAGCCAGTG
Found at i:90717756 original size:93 final size:93
Alignment explanation
Indices: 90717644--90717814 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
90717634 GCCCATAAGT
* *
90717644 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
90717709 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
90717737 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
90717802 CGAGTTCGGATGC
66 CGAGTTCGGATGC
90717815 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:90717811 original size:46 final size:46
Alignment explanation
Indices: 90717636--90717811 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
90717626 TGTAACCCGC
* * *
90717636 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
90717682 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
90717732 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
90717775 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
90717812 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:90720205 original size:29 final size:29
Alignment explanation
Indices: 90720166--90720253 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
90720156 CAAAGATAAC
*
90720166 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
90720195 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
90720224 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
90720254 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:90720224 original size:15 final size:15
Alignment explanation
Indices: 90720166--90720244 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
90720156 CAAAGATAAC
*
90720166 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
90720180 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
90720195 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
90720209 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
90720224 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
90720239 AAGAAA
1 AAGAAA
90720245 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:90720253 original size:15 final size:15
Alignment explanation
Indices: 90720177--90720253 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
90720167 AGAAAACCGA
90720177 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
90720192 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
90720206 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
90720220 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
90720236 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
90720251 ATA
1 ATA
90720254 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:90723312 original size:93 final size:93
Alignment explanation
Indices: 90723200--90723370 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
90723190 GCCCATAAGT
* *
90723200 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
90723265 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
90723293 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
90723358 CGAGTTCGGATGC
66 CGAGTTCGGATGC
90723371 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:90723367 original size:46 final size:46
Alignment explanation
Indices: 90723192--90723367 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
90723182 TGTAACCCGC
* * *
90723192 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
90723238 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
90723288 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
90723331 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
90723368 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:90729929 original size:29 final size:29
Alignment explanation
Indices: 90729896--90730027 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
90729886 CCTCCGAACT
** * * *
90729896 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
90729925 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
90729954 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
90729983 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
90730012 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
90730028 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:90737992 original size:29 final size:29
Alignment explanation
Indices: 90737959--90738090 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
90737949 CCTCCGAACT
** * * *
90737959 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
90737988 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
90738017 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
90738046 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
90738075 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
90738091 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:90740082 original size:39 final size:39
Alignment explanation
Indices: 90740027--90740164 Score: 181
Period size: 39 Copynumber: 3.5 Consensus size: 39
90740017 GGACTAAGAT
* *
90740027 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
90740066 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
90740106 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGGTTAAGTC
* *
90740145 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
90740165 CGTTATATCC
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 55 0.62
40 32 0.36
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:90747909 original size:85 final size:85
Alignment explanation
Indices: 90747747--90747913 Score: 219
Period size: 85 Copynumber: 2.0 Consensus size: 85
90747737 TCAAGTCTAT
*
90747747 TTTGACACAAGCTCCTATTTTAGTTCAATCAAAATCAGGTCAGGAGTTTGTGGTATACAATGATG
1 TTTGACACAAGCTCCTATTTTAGTTCAATCAAAATCAGGTCAGGAGTTTGTGGCATACAATGATG
*
90747812 TATCACACGCCAGGTTAAGA
66 CATCACACGCCAGGTTAAGA
* * * * * *
90747832 TTTGACACAAGCTCTTGTTTTAGTTCAA-CTGAAATTAGGTCGGGAGTTTGTGGCATACAGTGAT
1 TTTGACACAAGCTCCTATTTTAGTTCAATC-AAAATCAGGTCAGGAGTTTGTGGCATACAATGAT
* * *
90747896 GCATTATATGCCAGGTTA
65 GCATCACACGCCAGGTTA
90747914 GGATGTGTTC
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
84 1 0.01
85 69 0.99
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (85 bp):
TTTGACACAAGCTCCTATTTTAGTTCAATCAAAATCAGGTCAGGAGTTTGTGGCATACAATGATG
CATCACACGCCAGGTTAAGA
Found at i:90754240 original size:41 final size:40
Alignment explanation
Indices: 90754113--90754257 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
90754103 CTCGCCCAAG
* * * * *
90754113 GCCTTCGGGTCTTAGCCCGAATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
**
90754153 GCCTTCGGGACTTAGCCCGGATATAGTTTCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
90754193 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
90754234 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
90754258 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 56 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:90759981 original size:49 final size:49
Alignment explanation
Indices: 90759909--90760255 Score: 613
Period size: 49 Copynumber: 7.1 Consensus size: 49
90759899 ACATAATAAT
*
90759909 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
*
90759958 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
90760007 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
90760056 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
*
90760105 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
* * *
90760154 ATATGTGATAGGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
* * *
90760203 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
90760252 ATAT
1 ATAT
90760256 ATGTGGTAAA
Statistics
Matches: 288, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 288 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
Found at i:90760061 original size:27 final size:27
Alignment explanation
Indices: 90760031--90760113 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
90760021 CTAATGGCCG
90760031 ATGTGATGAATGTGAAAATGTATACAT
1 ATGTGATGAATGTGAAAATGTATACAT
** * **
90760058 ATGTGAT-AA-G-GCCTAATG---GCCG
1 ATGTGATGAATGTG-AAAATGTATACAT
90760080 ATGTGATGAATGTGAAAATGTATACAT
1 ATGTGATGAATGTGAAAATGTATACAT
90760107 ATGTGAT
1 ATGTGAT
90760114 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 2 0.05
24 6 0.15
25 6 0.15
26 2 0.05
27 15 0.38
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.31
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAATGTATACAT
Found at i:90760379 original size:37 final size:36
Alignment explanation
Indices: 90760329--90760410 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 36
90760319 AGAAATATGT
90760329 TCCGGGTGAGACCCAATGACTACGTGTGGAGATTACG
1 TCCGGGT-AGACCCAATGACTACGTGTGGAGATTACG
* *
90760366 TCCGGGTACGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTA-GACCCAATGACTACGTGTGGAGATTACG
90760403 TCCGGGTA
1 TCCGGGTA
90760411 AGACTTCGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 1 0.02
37 41 0.98
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (36 bp):
TCCGGGTAGACCCAATGACTACGTGTGGAGATTACG
Found at i:90763072 original size:19 final size:18
Alignment explanation
Indices: 90763050--90763105 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
90763040 TTAAAAGTTT
90763050 TAAAATTATTAAAAAATCA
1 TAAAATT-TTAAAAAATCA
90763069 TAAAATTTCTAAAAAATTCA
1 TAAAATTT-TAAAAAA-TCA
*
90763089 AAAAATTTTATAAAAAT
1 TAAAATTTTA-AAAAAT
90763106 TTTAGAATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 1 0.03
19 17 0.52
20 15 0.45
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (18 bp):
TAAAATTTTAAAAAATCA
Found at i:90763106 original size:20 final size:19
Alignment explanation
Indices: 90763051--90763106 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
90763041 TAAAAGTTTT
*
90763051 AAAATTATTAAAAAA-TCAT
1 AAAATT-TTAAAAAATTCAA
90763070 AAAATTTCTAAAAAATTCAA
1 AAAATTT-TAAAAAATTCAA
90763090 AAAATTTTATAAAAATT
1 AAAATTTTA-AAAAATT
90763107 TTAGAATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
18 1 0.03
19 15 0.45
20 17 0.52
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAATTTTAAAAAATTCAA
Found at i:90764317 original size:16 final size:16
Alignment explanation
Indices: 90764286--90764324 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
90764276 TAATTTTATA
90764286 AAAATAATATTTTTTG
1 AAAATAATATTTTTTG
*
90764302 TAAAT-ATATATTTTTG
1 AAAATAATAT-TTTTTG
90764318 AAAATAA
1 AAAATAA
90764325 ATAAGAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
15 4 0.21
16 14 0.74
17 1 0.05
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (16 bp):
AAAATAATATTTTTTG
Found at i:90764371 original size:17 final size:17
Alignment explanation
Indices: 90764349--90764383 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
90764339 AAAAAATAAA
90764349 CTTTAAAAATATTATAT
1 CTTTAAAAATATTATAT
90764366 CTTTAAAAATATTATAT
1 CTTTAAAAATATTATAT
90764383 C
1 C
90764384 GAGTTATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (17 bp):
CTTTAAAAATATTATAT
Found at i:90766119 original size:9 final size:9
Alignment explanation
Indices: 90766105--90766137 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
90766095 GTTAAACGAA
90766105 TCGAGTTAT
1 TCGAGTTAT
*
90766114 TCGAGTTAA
1 TCGAGTTAT
90766123 TCGAGTTAT
1 TCGAGTTAT
90766132 TCGAGT
1 TCGAGT
90766138 CAACTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:90766126 original size:18 final size:18
Alignment explanation
Indices: 90766103--90766137 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
90766093 GAGTTAAACG
90766103 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
90766121 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
90766138 CAACTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:90766206 original size:9 final size:9
Alignment explanation
Indices: 90766189--90766225 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
90766179 TGAGTTTTCG
90766189 AATTCGAAT
1 AATTCGAAT
*
90766198 AACTCGAAT
1 AATTCGAAT
90766207 AATTCGAAT
1 AATTCGAAT
90766216 AATTCGAAT
1 AATTCGAAT
90766225 A
1 A
90766226 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:90767259 original size:5 final size:5
Alignment explanation
Indices: 90767249--90767274 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
90767239 CTCGAAAATT
90767249 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
90767275 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:90767914 original size:18 final size:18
Alignment explanation
Indices: 90767875--90767959 Score: 120
Period size: 18 Copynumber: 4.8 Consensus size: 18
90767865 AATGATATGT
* *
90767875 AATCTTAGATAAGA-TAC
1 AATCTTAGATATGATTGC
*
90767892 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTGC
*
90767910 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTGC
90767927 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTGC
90767945 AATCTTAGATATGAT
1 AATCTTAGATATGAT
90767960 ATACAATTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
17 28 0.47
18 32 0.53
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (18 bp):
AATCTTAGATATGATTGC
Found at i:90767915 original size:35 final size:35
Alignment explanation
Indices: 90767866--90767960 Score: 154
Period size: 35 Copynumber: 2.7 Consensus size: 35
90767856 ATAATCTTCA
* *
90767866 ATGATATGTAATCTTAGATAAGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
90767902 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
90767937 ATGATTGCAATCTTAGATATGATA
1 ATGATTGCAATCTTAGATATGATA
90767961 TACAATTTTA
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 51 0.91
36 5 0.09
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:90768300 original size:12 final size:13
Alignment explanation
Indices: 90768280--90768310 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
90768270 TTTTAATTTA
90768280 TTATATATATTAT
1 TTATATATATTAT
90768293 TTAT-TATATTAT
1 TTATATATATTAT
90768305 TTATAT
1 TTATAT
90768311 TTTCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TTATATATATTAT
Found at i:90768302 original size:21 final size:21
Alignment explanation
Indices: 90768278--90768386 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
90768268 TATTTTAATT
90768278 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
90768299 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
90768317 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
90768336 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
90768359 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
90768380 TATTATA
1 TATTATA
90768387 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:90768308 original size:16 final size:16
Alignment explanation
Indices: 90768275--90768305 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
90768265 ACTTATTTTA
90768275 ATTTATTATATATATT
1 ATTTATTATATATATT
90768291 ATTTATTATAT-TATT
1 ATTTATTATATATATT
90768306 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:90768343 original size:7 final size:7
Alignment explanation
Indices: 90768326--90768432 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
90768316 AAATTTGTAA
90768326 ATTAT-T
1 ATTATAT
90768332 ATTATAT
1 ATTATAT
90768339 ATTATAT
1 ATTATAT
90768346 -TT-TA-
1 ATTATAT
90768350 ACTTATAT
1 A-TTATAT
90768358 ATCTTATAT
1 A--TTATAT
*
90768367 ATTTATTT
1 A-TTATAT
90768375 ATT-TAT
1 ATTATAT
*
90768381 ATTATAC
1 ATTATAT
90768388 ATTAT-T
1 ATTATAT
* *
90768394 -TTAAAA
1 ATTATAT
*
90768400 ACTTACAT
1 A-TTATAT
*
90768408 -TTTTAT
1 ATTATAT
90768414 ATTATAT
1 ATTATAT
*
90768421 ATTATAA
1 ATTATAT
90768428 ATTAT
1 ATTAT
90768433 TTCATTTATT
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 35 0.45
8 11 0.14
9 8 0.10
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:90768773 original size:3 final size:3
Alignment explanation
Indices: 90768765--90768808 Score: 79
Period size: 3 Copynumber: 14.3 Consensus size: 3
90768755 TATGTTACTA
90768765 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
90768809 GTATTTGTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:90771792 original size:2 final size:2
Alignment explanation
Indices: 90771787--90771813 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
90771777 AAGAAAGAAA
90771787 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
90771814 ACAGGTCACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:90774331 original size:11 final size:11
Alignment explanation
Indices: 90774307--90774339 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
90774297 CTTCTATTTC
*
90774307 AAAA-AAAAAA
1 AAAAGAAAAAG
90774317 AAAAGAAAAAG
1 AAAAGAAAAAG
90774328 AAAAGAAAAAG
1 AAAAGAAAAAG
90774339 A
1 A
90774340 GAAAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 4 0.19
11 17 0.81
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Done.