Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 291 of 433
Found at i:90774331 original size:13 final size:13
Alignment explanation
Indices: 90774309--90774367 Score: 66
Period size: 13 Copynumber: 4.5 Consensus size: 13
90774299 TCTATTTCAA
*
90774309 AAAAAAAAAAAAG
1 AAAAAGAAAAAAG
90774322 AAAAAGAAAAGAA-
1 AAAAAGAAAA-AAG
* *
90774335 AAAGAGAAAAAAT
1 AAAAAGAAAAAAG
*
90774348 AAAGAGAAAAAAG
1 AAAAAGAAAAAAG
90774361 AAAAAGA
1 AAAAAGA
90774368 TGGAGAGGCC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
12 2 0.05
13 36 0.90
14 2 0.05
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:90774366 original size:6 final size:6
Alignment explanation
Indices: 90774307--90774367 Score: 56
Period size: 6 Copynumber: 10.0 Consensus size: 6
90774297 CTTCTATTTC
*
90774307 AAAA-A AAAA-A AAAAGA AAAAG- AAAAGA AAAAGA GAAAAAA TAAAGAGAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA -AAAAGA -AAA-AG-A
90774356 AAAAGA AAAAGA
1 AAAAGA AAAAGA
90774368 TGGAGAGGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
5 14 0.29
6 19 0.40
7 10 0.21
8 4 0.08
9 1 0.02
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:90774373 original size:19 final size:19
Alignment explanation
Indices: 90774315--90774373 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
90774305 TCAAAAAAAA
*
90774315 AAAAAAGAAAAAGA-AAAG
1 AAAAAAGAAAAAGATAGAG
90774333 AAAAAGAGAAAAA-ATAAAGAG
1 AAAAA-AGAAAAAGAT--AGAG
*
90774354 AAAAAAGAAAAAGATGGAG
1 AAAAAAGAAAAAGATAGAG
90774373 A
1 A
90774374 GGCCAAGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
18 6 0.18
19 11 0.32
20 7 0.21
21 10 0.29
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.03
Consensus pattern (19 bp):
AAAAAAGAAAAAGATAGAG
Found at i:90775507 original size:35 final size:33
Alignment explanation
Indices: 90775467--90775531 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
90775457 CATTGGCATT
90775467 CTGTGTTTAAGGAACAATCGAAGATAGCAGATTTG
1 CTGTGTTTAA--AACAATCGAAGATAGCAGATTTG
* *
90775502 CTGTGTTTTAAACGATCGAAGATAGCAGAT
1 CTGTGTTTAAAACAATCGAAGATAGCAGAT
90775532 CTAACCTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 19 0.68
35 9 0.32
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (33 bp):
CTGTGTTTAAAACAATCGAAGATAGCAGATTTG
Found at i:90775898 original size:117 final size:119
Alignment explanation
Indices: 90775523--90776108 Score: 1026
Period size: 119 Copynumber: 5.0 Consensus size: 119
90775513 ACGATCGAAG
*
90775523 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
90775588 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
90775642 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
90775707 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
90775761 ATA-CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
90775825 TTACAA-GAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
90775878 ATA-CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATG-TTTGGTATTCTT-TGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
*
90775940 TTACAAGAAACAAATCGAGGACATAGCAGA-TTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
90775993 ATAGCAGATCTAACCTTCAGATG--TATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* * * *
90776056 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
90776109 CAGACTCAAG
Statistics
Matches: 452, Mismatches: 10, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
114 23 0.05
115 45 0.10
116 83 0.18
117 113 0.25
118 67 0.15
119 121 0.27
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:90776171 original size:83 final size:83
Alignment explanation
Indices: 90776032--90776384 Score: 634
Period size: 83 Copynumber: 4.2 Consensus size: 83
90776022 GAAGCAGATC
90776032 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
90776097 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
90776115 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
90776180 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
90776198 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
90776263 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
90776281 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
90776346 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
90776365 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
90776385 ACAAATCGAA
Statistics
Matches: 262, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
83 183 0.70
84 79 0.30
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:90776796 original size:17 final size:17
Alignment explanation
Indices: 90776776--90776872 Score: 133
Period size: 17 Copynumber: 5.5 Consensus size: 17
90776766 AATGATATGT
90776776 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
90776793 AATCTTA-ATATGATTGC
1 AATCTTAGATATGA-TAC
90776810 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
90776827 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
90776845 AATCTTAGATATGATATAC
1 AATCTTAGATATG--ATAC
90776864 AATCTTAGA
1 AATCTTAGA
90776873 AGATATGATT
Statistics
Matches: 71, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.08
17 32 0.45
18 21 0.30
19 11 0.15
20 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:90776797 original size:34 final size:34
Alignment explanation
Indices: 90776759--90776870 Score: 163
Period size: 34 Copynumber: 3.2 Consensus size: 34
90776749 ATGGAAATAT
* *
90776759 AATCTTCA-ATGATATGTAATCTTAGATATGATAC
1 AATCTTAATATGAT-TGCAATCTTAGATATGATAC
90776793 AATCTTAATATGATTGCAATCTTAGATATGATAC
1 AATCTTAATATGATTGCAATCTTAGATATGATAC
90776827 AATCTTAGATATGATTGCAATCTTAGATATGATATAC
1 AATCTTA-ATATGATTGCAATCTTAGATATG--ATAC
90776864 AATCTTA
1 AATCTTA
90776871 GAAGATATGA
Statistics
Matches: 72, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
34 33 0.46
35 28 0.39
37 11 0.15
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (34 bp):
AATCTTAATATGATTGCAATCTTAGATATGATAC
Found at i:90776839 original size:35 final size:35
Alignment explanation
Indices: 90776767--90776872 Score: 169
Period size: 35 Copynumber: 3.0 Consensus size: 35
90776757 ATAATCTTCA
*
90776767 ATGATATGTAATCTTAGATATGATACAATCTTA-AT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
90776802 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
90776837 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
90776873 AGATATGATT
Statistics
Matches: 67, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
34 26 0.39
35 28 0.42
37 13 0.19
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:90777662 original size:3 final size:3
Alignment explanation
Indices: 90777654--90777723 Score: 122
Period size: 3 Copynumber: 23.3 Consensus size: 3
90777644 TATGTTACTA
90777654 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
90777702 TAT TAT TAT TTT TAT AAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
90777724 GTATTTGTTT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:90777911 original size:2 final size:2
Alignment explanation
Indices: 90777904--90777930 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
90777894 TTATATTTCT
90777904 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
90777931 TAATTAATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:90778617 original size:22 final size:23
Alignment explanation
Indices: 90778582--90778624 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
90778572 CTCCCGTTTT
* *
90778582 CATTTTTCTTAAAAGTCGATTCC
1 CATTTTTCTCAAAACTCGATTCC
90778605 CATTTTTC-CAAAACTCGATT
1 CATTTTTCTCAAAACTCGATT
90778625 TGAAAATGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (23 bp):
CATTTTTCTCAAAACTCGATTCC
Found at i:90779568 original size:14 final size:14
Alignment explanation
Indices: 90779551--90779581 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
90779541 GTAGAAGAAG
90779551 AAAAATAGAAAAAA
1 AAAAATAGAAAAAA
*
90779565 AAAAGTAGAAAAAA
1 AAAAATAGAAAAAA
90779579 AAA
1 AAA
90779582 TCAACAATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (14 bp):
AAAAATAGAAAAAA
Found at i:90782373 original size:28 final size:28
Alignment explanation
Indices: 90782319--90782388 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
90782309 ATAGTAAGTC
* *
90782319 CGCACACTTAGTACTTAATAATCAAACT
1 CGCACACTTAGTGCTTAACAATCAAACT
*
90782347 CGCACACTTAGTGC-TATACAATTAAACT
1 CGCACACTTAGTGCTTA-ACAATCAAACT
90782375 CGCACACTTAGTGC
1 CGCACACTTAGTGC
90782389 CAATCTTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.05
28 36 0.95
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAACAATCAAACT
Found at i:90782956 original size:101 final size:105
Alignment explanation
Indices: 90782780--90783078 Score: 516
Period size: 101 Copynumber: 2.8 Consensus size: 105
90782770 CTTCTTAAAC
* *
90782780 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAATATAATAAACAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
90782845 TTAATCCATGCATATTGGTCGGCTACTTTCATC-T-TT-T
66 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTATTAT
90782882 ATAATATATTAACATATATT-AAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
90782946 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTTTATTAAAT
66 TTAATCCATGCATATTGGTCGGCTACTTTCATC--TTATT--AT
90782990 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
90783055 TTAATCCATGCATATTGGTCGGCT
66 TTAATCCATGCATATTGGTCGGCT
90783079 GTTAATTCCT
Statistics
Matches: 187, Mismatches: 2, Indels: 9
0.94 0.01 0.05
Matches are distributed among these distances:
101 75 0.40
102 20 0.11
104 1 0.01
105 2 0.01
108 21 0.11
109 68 0.36
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.35
Consensus pattern (105 bp):
ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
TTAATCCATGCATATTGGTCGGCTACTTTCATCTTATTAT
Found at i:90783038 original size:109 final size:107
Alignment explanation
Indices: 90782759--90783078 Score: 526
Period size: 109 Copynumber: 3.0 Consensus size: 107
90782749 GAAAGATGAA
* *
90782759 TACTTTCCTCTCTTCTTAAACATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
1 TACTTTCATCT-TT-TTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
* *
90782824 TATAATAAACAATTCAAGTCATTAATCCATGCATATTGGTCGGC
64 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
90782868 TACTTTCATC--TTT---TATAATATATTAACATATATT-AAGTATACCATAATGCCATAAAACA
1 TACTTTCATCTTTTTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACA
90782927 TAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
66 TAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
90782969 TACTTTCATCTTTTATTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
1 TACTTTCATC-TTT-TTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
90783034 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
64 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
90783078 T
1 T
90783079 GTTAATTCCT
Statistics
Matches: 199, Mismatches: 4, Indels: 16
0.91 0.02 0.07
Matches are distributed among these distances:
101 75 0.38
102 20 0.10
104 1 0.01
105 4 0.02
106 1 0.01
108 21 0.11
109 77 0.39
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.36
Consensus pattern (107 bp):
TACTTTCATCTTTTTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACA
TAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
Found at i:90784481 original size:28 final size:27
Alignment explanation
Indices: 90784429--90784481 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
90784419 CTATTCAGAA
* *
90784429 ATCAGTGTTAACTAGGCCTTAGCCCAT
1 ATCAGTATTAACTAGGCCATAGCCCAT
*
90784456 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTAGGCCATAGCCC
90784482 CTTACAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTAGGCCATAGCCCAT
Found at i:90784566 original size:60 final size:59
Alignment explanation
Indices: 90784443--90784577 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 59
90784433 GTGTTAACTA
* *
90784443 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTATACTG
* * *
90784504 GGCCTAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATACTG
*
90784564 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
90784578 TAACACAGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 3 0.05
60 51 0.78
61 8 0.12
62 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGTACAGAGTATACTG
Found at i:90784595 original size:20 final size:20
Alignment explanation
Indices: 90784570--90784615 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
90784560 ATTGGGCCTT
90784570 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
90784590 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
90784609 GCCCATA
1 GCCCATA
90784616 ACAGAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:90786896 original size:3 final size:3
Alignment explanation
Indices: 90786888--90786923 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
90786878 TAAAAACCAA
* *
90786888 AAT AAT AAT AAT AAT AAT AAT AAT AAC CAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
90786924 GAAGATTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:90789956 original size:28 final size:27
Alignment explanation
Indices: 90789904--90789956 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
90789894 CTATTCAGAA
* *
90789904 ATCAGTGTTAACTAGGCCTTAGCCCAT
1 ATCAGTATTAACTAGGCCATAGCCCAT
*
90789931 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTAGGCCATAGCCC
90789957 CTTACAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTAGGCCATAGCCCAT
Found at i:90790041 original size:60 final size:59
Alignment explanation
Indices: 90789918--90790052 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 59
90789908 GTGTTAACTA
* *
90789918 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTATACTG
* * *
90789979 GGCCTAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATACTG
*
90790039 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
90790053 TAACACAGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 3 0.05
60 51 0.78
61 8 0.12
62 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGTACAGAGTATACTG
Found at i:90790070 original size:20 final size:20
Alignment explanation
Indices: 90790045--90790090 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
90790035 ATTGGGCCTT
90790045 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
90790065 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
90790084 GCCCATA
1 GCCCATA
90790091 ACAGAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:90794431 original size:30 final size:30
Alignment explanation
Indices: 90794397--90794454 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
90794387 TTTTCGAGCA
* *
90794397 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
90794427 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
90794455 ATGTGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:90794905 original size:47 final size:48
Alignment explanation
Indices: 90794798--90795111 Score: 213
Period size: 47 Copynumber: 6.7 Consensus size: 48
90794788 CTTGTATGCC
* * * *
90794798 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCC-ACA-ATATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGAGATA--AGAGCT
* * *
90794844 AGTGAAAGACCATGT-TGGGACATGGCATCGGCGTAGAGAATAAGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGAG-ATAAGAGCT
* * * * *
90794892 AGTGTAAGA-CATGTTTGGGACAT-GCATTGGCCTCGACGATGATAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGA-GATAAGAGCT
* * * ** *
90794939 AGTGTAAGA-CGTGTCTGGGACA-CGCATC-GACTA-AGATTTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGAGATAAGAGCT
* * **
90794983 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACGTATAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-C-TAGAGATAAGAGCT
* * * * * *
90795031 AGTATAAGACCATGTCTGGGACATGGCATCAGCCTCGATGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGA-GATAAGAGCT
*
90795080 AGTGTAAGACCATGTCTGAGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
90795112 TAACATATCC
Statistics
Matches: 214, Mismatches: 38, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
44 32 0.15
45 2 0.01
46 19 0.09
47 60 0.28
48 39 0.18
49 51 0.24
50 11 0.05
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGAGATAAGAGCT
Found at i:90795002 original size:91 final size:94
Alignment explanation
Indices: 90794798--90795010 Score: 247
Period size: 94 Copynumber: 2.3 Consensus size: 94
90794788 CTTGTATGCC
* *
90794798 AGTGTAAGACATGTCTGAGACATGCATCGGCCACAATATGATAGCCAGTGAAAGACCATGTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGATAGCCAGTGAAAGACCATGTTGGG
* *
90794863 ACATGGCATCGGCGTAGAGAATAAGCGCT
66 ACATCGCATCGACGTAGAGAATAAGCGCT
* * * * * * *
90794892 AGTGTAAGACATGTTTGGGACATGCATTGGCCTCGACGATGATAGCTAGTGTAAGA-CGTGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AAGATGATAGCCAGTGAAAGACCATGT-TG
** *
90794956 GGACA-CGCATCGAC-TA-AG-ATTTGTGCT
64 GGACATCGCATCGACGTAGAGAATAAGCGCT
90794983 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
90795011 AGCACGTATA
Statistics
Matches: 101, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
91 32 0.32
92 2 0.02
93 2 0.02
94 41 0.41
95 24 0.24
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGATAGCCAGTGAAAGACCATGTTGGG
ACATCGCATCGACGTAGAGAATAAGCGCT
Found at i:90801778 original size:24 final size:24
Alignment explanation
Indices: 90801746--90801804 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
90801736 TCAAATGCAT
90801746 TATGTGTGCGATTTACTATGGCAC
1 TATGTGTGCGATTTACTATGGCAC
90801770 TATGTGTGCGATTTACTATGGCAC
1 TATGTGTGCGATTTACTATGGCAC
90801794 TATGTGTGCGA
1 TATGTGTGCGA
90801805 ACATAATAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.20, C:0.15, G:0.27, T:0.37
Consensus pattern (24 bp):
TATGTGTGCGATTTACTATGGCAC
Found at i:90804573 original size:27 final size:27
Alignment explanation
Indices: 90804529--90804708 Score: 209
Period size: 27 Copynumber: 6.7 Consensus size: 27
90804519 GTTTTGCCCC
*
90804529 TGGTAAAATGACTGTTTTGCCCTTATG
1 TGGTAAAATGATTGTTTTGCCCTTATG
* *
90804556 TGGTAAAATGATTATTTTGCCTTTATAG
1 TGGTAAAATGATTGTTTTGCCCTTAT-G
*
90804584 -GGTAAAATGATTGTTTTGCCCTTGTG
1 TGGTAAAATGATTGTTTTGCCCTTATG
* * * * *
90804610 GGGCAAAATAACTGTTTAGCCCTTATG
1 TGGTAAAATGATTGTTTTGCCCTTATG
* *
90804637 TGCTAAAATGATTATTTTGCCCTTATG
1 TGGTAAAATGATTGTTTTGCCCTTATG
* ***
90804664 AGGTAAAATGACAATTTTGCCCTTATG
1 TGGTAAAATGATTGTTTTGCCCTTATG
90804691 TGGTAAAATGATTGTTTT
1 TGGTAAAATGATTGTTTT
90804709 AACCCTAACT
Statistics
Matches: 125, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 123 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.41
Consensus pattern (27 bp):
TGGTAAAATGATTGTTTTGCCCTTATG
Found at i:90804707 original size:81 final size:81
Alignment explanation
Indices: 90804529--90804707 Score: 243
Period size: 81 Copynumber: 2.2 Consensus size: 81
90804519 GTTTTGCCCC
* * *
90804529 TGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGATTATTTTGCCTTTATAGGGTAAAATGA
1 TGGTAAAATGACTGTTTAGCCCTTATGTGCTAAAATGATTATTTTGCCCTTATAGGGTAAAATGA
*** *
90804594 TTGTTTTGCCCTTGTG
66 CAATTTTGCCCTTATG
* * *
90804610 GGGCAAAATAACTGTTTAGCCCTTATGTGCTAAAATGATTATTTTGCCCTTAT-GAGGTAAAATG
1 TGGTAAAATGACTGTTTAGCCCTTATGTGCTAAAATGATTATTTTGCCCTTATAG-GGTAAAATG
90804674 ACAATTTTGCCCTTATG
65 ACAATTTTGCCCTTATG
*
90804691 TGGTAAAATGATTGTTT
1 TGGTAAAATGACTGTTT
90804708 TAACCCTAAC
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 82 0.99
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (81 bp):
TGGTAAAATGACTGTTTAGCCCTTATGTGCTAAAATGATTATTTTGCCCTTATAGGGTAAAATGA
CAATTTTGCCCTTATG
Found at i:90804725 original size:81 final size:81
Alignment explanation
Indices: 90804559--90804726 Score: 187
Period size: 81 Copynumber: 2.1 Consensus size: 81
90804549 CCTTATGTGG
* *** *
90804559 TAAAATGATTATTTTGCCTTTATAGGGTAAAATGATTGTTTTGCCCTTGTGGGGCAAAATAACTG
1 TAAAATGATTATTTTGCCCTTATAGGGTAAAATGACAATTTTGCCCTTATGGGGCAAAATAACTG
* ** *
90804624 TTTAGCCCTTATGTGC
66 TTTAACCCTTAACTGA
* * * *
90804640 TAAAATGATTATTTTGCCCTTAT-GAGGTAAAATGACAATTTTGCCCTTATGTGGTAAAATGATT
1 TAAAATGATTATTTTGCCCTTATAG-GGTAAAATGACAATTTTGCCCTTATGGGGCAAAATAACT
90804704 GTTTTAACCC-TAACTGA
65 G-TTTAACCCTTAACTGA
90804721 TAAAAT
1 TAAAAT
90804727 AACTGTTTTA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.01
81 64 0.89
82 7 0.10
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (81 bp):
TAAAATGATTATTTTGCCCTTATAGGGTAAAATGACAATTTTGCCCTTATGGGGCAAAATAACTG
TTTAACCCTTAACTGA
Found at i:90814200 original size:26 final size:26
Alignment explanation
Indices: 90814169--90814222 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
90814159 AATTATGAAA
* *
90814169 TTATACTTG-TAATATAAAGAGATGAT
1 TTATACATGTTAA-ATAAAGACATGAT
*
90814195 TTATACATGTTAAATAAATACATGAT
1 TTATACATGTTAAATAAAGACATGAT
90814221 TT
1 TT
90814223 GGAAAACATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.41
Consensus pattern (26 bp):
TTATACATGTTAAATAAAGACATGAT
Found at i:90815177 original size:74 final size:73
Alignment explanation
Indices: 90815057--90815193 Score: 231
Period size: 74 Copynumber: 1.9 Consensus size: 73
90815047 TGCTATAGAA
* *
90815057 CCTAGAATATGGGTGTGTTTTTGGCCGTGTGAAACCTACACCAAATTTCAAAATGAATTAATTGA
1 CCTAGAACATGGGTGTGTTTTTGGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATTGA
90815122 CTACACGG
66 CTACACGG
90815130 CCTAGAACATGGGCATGTG-TTTTGGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATT
1 CCTAGAACATGGG--TGTGTTTTTGGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATT
90815194 AACCATACAG
Statistics
Matches: 60, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
73 12 0.20
74 44 0.73
75 4 0.07
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (73 bp):
CCTAGAACATGGGTGTGTTTTTGGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATTGA
CTACACGG
Found at i:90815231 original size:74 final size:74
Alignment explanation
Indices: 90815079--90815235 Score: 197
Period size: 74 Copynumber: 2.1 Consensus size: 74
90815069 GTGTGTTTTT
* * * * * *
90815079 GGCCGTGTGAAACCTACACCAAATTTCAAAATGAATTAATTGACTACACGGCCTAGAACATGGGC
1 GGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATTAACCACACAGCCTAGAACACGAGC
****
90815144 ATGTGTTTT
66 ATGTGACAA
* *
90815153 GGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATTAACCATACAGCCTAGCACACGAGC
1 GGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATTAACCACACAGCCTAGAACACGAGC
*
90815218 GTGTGACAA
66 ATGTGACAA
90815227 GGCCGTGTG
1 GGCCGTGTG
90815236 CACAAGTCAA
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (74 bp):
GGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATTAACCACACAGCCTAGAACACGAGC
ATGTGACAA
Found at i:90816675 original size:47 final size:50
Alignment explanation
Indices: 90816602--90816780 Score: 154
Period size: 49 Copynumber: 3.7 Consensus size: 50
90816592 GGGTATAATA
* * *
90816602 CCGATGCCATGTTCCAGACTTGGTCTTACACTGGCTCA-AGTC-TC-AAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATAGTCATCGAAG
* * * * * *
90816649 TCGATGCCATGTCCCAAACATAGTCTTACATTGACT-ATCGTCATCGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATAGTCATCGAAG
* * * * *
90816698 CCGATGCCATGTCCCATACATGGTCTTACACTAGCTC-TCG-CATATCCATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATAGTC--ATCGAAG
* *
90816748 CCGATGCCCTGTCCCGAACATGGTCTTACACTG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTG
90816781 ACACATCTCA
Statistics
Matches: 105, Mismatches: 21, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
46 1 0.01
47 32 0.30
48 3 0.03
49 35 0.33
50 34 0.32
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.27
Consensus pattern (50 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATAGTCATCGAAG
Found at i:90820613 original size:48 final size:46
Alignment explanation
Indices: 90820496--90820658 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 46
90820486 AGGTGTTACA
*
90820496 CCAGACATGTCTTACACTGGCT-TACCTTACGAGGCCGATGCATGTC
1 CCAGACATGTCTTACACTGGCTCT-CCTTACAAGGCCGATGCATGTC
* * * *
90820542 CCAGACATTTCTTACACTAGCTCTCGTCT-CAATGCCGATGCCATGTC
1 CCAGACATGTCTTACACTGGCTCTCCT-TACAAGGCCGATG-CATGTC
* * ***
90820589 CCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTC
1 CCAGACAT-GTCTTACACTGGCTCTCCTTACAAGGCCGATGCATGTC
* * *
90820636 ACAAACATGTCTTACACTAGCTC
1 CCAGACATGTCTTACACTGGCTC
90820659 ACAATAACCT
Statistics
Matches: 96, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
46 45 0.47
47 28 0.29
48 23 0.24
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (46 bp):
CCAGACATGTCTTACACTGGCTCTCCTTACAAGGCCGATGCATGTC
Found at i:90824437 original size:21 final size:19
Alignment explanation
Indices: 90824412--90824456 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
90824402 TAAGGAATAT
*
90824412 TGGTTATTGATAATGTTGGAA
1 TGGTTAATGAT-ATGTTGG-A
*
90824433 TGGTTAATGATGTGTTGGA
1 TGGTTAATGATATGTTGGA
90824452 TGGTT
1 TGGTT
90824457 GTTGTTTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 6 0.27
21 10 0.45
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (19 bp):
TGGTTAATGATATGTTGGA
Found at i:90829379 original size:16 final size:16
Alignment explanation
Indices: 90829358--90829391 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
90829348 CTGAACATAC
90829358 TTCTTATTTATTTATA
1 TTCTTATTTATTTATA
90829374 TTCTTATTTATTTATA
1 TTCTTATTTATTTATA
90829390 TT
1 TT
90829392 TCAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTCTTATTTATTTATA
Found at i:90829435 original size:75 final size:75
Alignment explanation
Indices: 90829312--90829453 Score: 266
Period size: 75 Copynumber: 1.9 Consensus size: 75
90829302 TAATACAAAA
*
90829312 ATATTTCACAAAAATTATACAACAAGGAAAATCATACTGAACATACTTCTTATTTATTTATATTC
1 ATATTTCAAAAAAATTATACAACAAGGAAAATCATACTGAACATACTTCTTATTTATTTATATTC
90829377 TTATTTATTT
66 TTATTTATTT
*
90829387 ATATTTCAAAAAAATTATACAACAGGGAAAATCATACTGAACATACTTCTTATTTATTTATATTC
1 ATATTTCAAAAAAATTATACAACAAGGAAAATCATACTGAACATACTTCTTATTTATTTATATTC
90829452 TT
66 TT
90829454 TCTAAGTTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (75 bp):
ATATTTCAAAAAAATTATACAACAAGGAAAATCATACTGAACATACTTCTTATTTATTTATATTC
TTATTTATTT
Found at i:90830003 original size:70 final size:70
Alignment explanation
Indices: 90829890--90830039 Score: 246
Period size: 70 Copynumber: 2.1 Consensus size: 70
90829880 AAGATAGCAG
*
90829890 ATCACCACATTTCTCATTATAATATACATATTGGTCCTTAGACTAGCAGTTGTAGGCTATCAGAA
1 ATCACCACATTTCTCATTATAATATACATACTGGTCCTTAGACTAGCAGTTGTAGGCTATCAGAA
*
90829955 GGCTA
66 GGCCA
* * * *
90829960 ATCACCACATTTCTCATTATAATATACATACTGGTTCTTAGACTGGCAGTTGTCGGCTATTAGAA
1 ATCACCACATTTCTCATTATAATATACATACTGGTCCTTAGACTAGCAGTTGTAGGCTATCAGAA
90830025 GGCCA
66 GGCCA
90830030 ATCACCACAT
1 ATCACCACAT
90830040 ACTTTTAAGT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
70 74 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (70 bp):
ATCACCACATTTCTCATTATAATATACATACTGGTCCTTAGACTAGCAGTTGTAGGCTATCAGAA
GGCCA
Found at i:90839928 original size:40 final size:40
Alignment explanation
Indices: 90839884--90840108 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
90839874 GCTACTCGTT
* * *
90839884 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
* * *
90839924 CAAATGCCTTCGGGA-CTTATCCCGGATCTAGTAACTCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
* *
90839964 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
90840004 AAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
90840044 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
90840084 CAAA-GCCTTCGGAACTTAGCCCGGA
1 CAAATGCCTTCGGATCTTAGCCCGGA
90840109 CATCATTCGA
Statistics
Matches: 168, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 22 0.13
40 145 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:90845074 original size:40 final size:40
Alignment explanation
Indices: 90844842--90845067 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
90844832 TCGAATGATG
* * *
90844842 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
90844882 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
90844922 TTCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
90844962 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
90845002 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
90845043 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90845068 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 160 0.94
41 9 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:90852350 original size:40 final size:40
Alignment explanation
Indices: 90852139--90852351 Score: 263
Period size: 40 Copynumber: 5.3 Consensus size: 40
90852129 GAGCTAAGTC
* * *
90852139 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGAT
* * *
90852179 CAGAAGGCATTCGTGCGAGTTACTAAATCCAGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
*
90852219 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
**
90852259 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-T
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
* *
90852298 CCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-T
1 -CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT
90852338 CCCGAAGGCATTTG
1 -CCGAAGGCATTTG
90852352 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 148 0.94
41 8 0.05
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
Found at i:90857056 original size:27 final size:27
Alignment explanation
Indices: 90857024--90857188 Score: 217
Period size: 27 Copynumber: 6.1 Consensus size: 27
90857014 ACCCTGATCA
* *
90857024 GTAAAATGACTATTTTTCCCTTACGTG
1 GTAAAATGACTATTTTGCCCTTATGTG
* * *
90857051 GCAAAATGACTGTTTTGCCCTTATATG
1 GTAAAATGACTATTTTGCCCTTATGTG
90857078 GTAAAATGACTATTTTGCCCTTATGTG
1 GTAAAATGACTATTTTGCCCTTATGTG
*
90857105 GTAAAATGACTATTTTGCCCTTGTGTG
1 GTAAAATGACTATTTTGCCCTTATGTG
*
90857132 GTAAAATGAC-AGTTTTGTCCTTATGTG
1 GTAAAATGACTA-TTTTGCCCTTATGTG
* *
90857159 GTAAAATGA-TGATTTTTCCCTTATATG
1 GTAAAATGACT-ATTTTGCCCTTATGTG
90857186 GTA
1 GTA
90857189 CGCTAATTGT
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 119 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.41
Consensus pattern (27 bp):
GTAAAATGACTATTTTGCCCTTATGTG
Found at i:90858666 original size:24 final size:24
Alignment explanation
Indices: 90858630--90858677 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
90858620 TCTCAATCAA
*
90858630 TTCAAAATCTAAATTTGCAACTAT
1 TTCAAAATATAAATTTGCAACTAT
*
90858654 TTCAAAATATAAATTTGTAACTAT
1 TTCAAAATATAAATTTGCAACTAT
90858678 ACTCTAAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.40
Consensus pattern (24 bp):
TTCAAAATATAAATTTGCAACTAT
Found at i:90860366 original size:12 final size:13
Alignment explanation
Indices: 90860344--90860376 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
90860334 AAAAACCAAC
90860344 GAAAGAAAAATTA
1 GAAAGAAAAATTA
90860357 GAAA-AAAAATTA
1 GAAAGAAAAATTA
*
90860369 GAAGGAAA
1 GAAAGAAA
90860377 GGCAAAGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.70, C:0.00, G:0.18, T:0.12
Consensus pattern (13 bp):
GAAAGAAAAATTA
Found at i:90864851 original size:44 final size:43
Alignment explanation
Indices: 90864671--90864898 Score: 257
Period size: 42 Copynumber: 5.3 Consensus size: 43
90864661 GGCGTTTTTT
* *
90864671 AGGACCTTTAGCGGCGCTCTTAT-AAAAACGCCGCCAAAGACC
1 AGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACC
* *
90864713 AGGACCTTTAGTGGCGCTTTTAT-AAAAACGCCGCTAAATACC
1 AGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACC
* * *
90864755 TGTA-CTTGTAGCGGCGCTTTTATAAAAAA-GCCGCTATAGACC
1 AGGACCTT-TAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACC
* * *
90864797 TGTACTTTTAGCGGCGCTTTTATAAAAAAACGCCGCTAAAGACC
1 AGGACCTTTAGCGGCGCTTTTAT-AAAAAACGCCGCTAAAGACC
* * * *
90864841 AGGACCTTTAGCAGCGTTTTTATAAAAAACGCTGCTATAGACC
1 AGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACC
* * *
90864884 TGTACTTTTAGCGGC
1 AGGACCTTTAGCGGC
90864899 TAATTTGCCC
Statistics
Matches: 159, Mismatches: 22, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
41 3 0.02
42 84 0.53
43 42 0.26
44 30 0.19
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (43 bp):
AGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACC
Found at i:90865813 original size:18 final size:18
Alignment explanation
Indices: 90865781--90865818 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
90865771 TACAATATAG
90865781 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
90865800 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
90865817 TA
1 TA
90865819 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:90869696 original size:47 final size:47
Alignment explanation
Indices: 90869510--90869834 Score: 454
Period size: 49 Copynumber: 6.7 Consensus size: 47
90869500 TTAGGATTTT
90869510 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
90869559 AAGTGATGAATGTGAAAGTGTGTATATATGTGAAAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCG
90869608 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCG
90869657 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
90869704 ATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * *
90869753 ATGTGATGAATGTGAAAGTGTATATATGTGAT-AGTGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCG
* * * *
90869800 ACGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
90869835 TCCCGAAGGG
Statistics
Matches: 257, Mismatches: 13, Indels: 13
0.91 0.05 0.05
Matches are distributed among these distances:
46 2 0.01
47 100 0.39
48 2 0.01
49 150 0.58
51 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:90869706 original size:96 final size:96
Alignment explanation
Indices: 90869510--90869834 Score: 494
Period size: 96 Copynumber: 3.4 Consensus size: 96
90869500 TTAGGATTTT
*
90869510 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
90869575 AGTGTGTATATATGTGAAAAGGCCTAATGGCCG
66 A--GTGTATATATGTGATAAGGCCTAATGGCCG
*
90869608 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
90869673 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
90869704 ATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
90869769 AGTGTATATATGTGAT-AGTGCCGAGTGGCCA
66 AGTGTATATATGTGATAAG-GCCTAATGGCCG
* * *
90869800 ACGTGATGGATGTGGAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
90869835 TCCCGAAGGG
Statistics
Matches: 212, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
94 10 0.05
95 3 0.01
96 135 0.64
98 64 0.30
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:90875357 original size:40 final size:40
Alignment explanation
Indices: 90875283--90875507 Score: 287
Period size: 40 Copynumber: 5.6 Consensus size: 40
90875273 AACCCAAGTA
* * *
90875283 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
90875322 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
90875362 CCTTCGGGACTTAGCCC-GAGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGTC-ACTA---GCACAAATG
* *
90875405 CCTTCGGGACTTCGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
90875445 CCTTCGGGACTTAGCCCAGATATGGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
90875485 CCTTCGGGACTTAGGCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
90875508 CATCCGAATA
Statistics
Matches: 164, Mismatches: 13, Indels: 17
0.85 0.07 0.09
Matches are distributed among these distances:
39 15 0.09
40 112 0.68
41 1 0.01
43 33 0.20
44 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:90875406 original size:83 final size:82
Alignment explanation
Indices: 90875283--90875507 Score: 302
Period size: 83 Copynumber: 2.8 Consensus size: 82
90875273 AACCCAAGTA
* * * *
90875283 CCTTCGGGATTTAGCCGGA-TATAGCA--ACTCGCACACATGCCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGAGTATAGCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
90875345 AGTCACTAGCACAAATG
66 AGTCACTAGCACAAATG
* *
90875362 CCTTCGGGACTTAGCCCGAGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCTCGGATA
1 CCTTCGGGACTTAGCCCGAGTATAGC-ACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
90875427 TAGTCACTAGCACAAATG
65 TAGTCACTAGCACAAATG
* *
90875445 CCTTCGGGACTTAGCCC-AGATATGGTCACTA---GCACAAATGCCTTCGGGACTTAGGCCGGAT
1 CCTTCGGGACTTAGCCCGAG-TATAG-CACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
90875506 AT
64 AT
90875508 CATCCGAATA
Statistics
Matches: 130, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
79 17 0.13
80 35 0.27
81 1 0.01
82 2 0.02
83 74 0.57
84 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CCTTCGGGACTTAGCCCGAGTATAGCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
AGTCACTAGCACAAATG
Found at i:90883308 original size:40 final size:40
Alignment explanation
Indices: 90883217--90883439 Score: 312
Period size: 40 Copynumber: 5.6 Consensus size: 40
90883207 AACCCAAGTA
* *
90883217 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
90883255 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
90883295 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
90883338 CCTTCGGGACTT-GCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
90883377 CCTTCGGGACTTAGCCCGGATATGGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
90883417 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
90883440 CATCCGAATA
Statistics
Matches: 168, Mismatches: 8, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
38 12 0.07
39 39 0.23
40 80 0.48
42 15 0.09
43 22 0.13
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:90883354 original size:82 final size:82
Alignment explanation
Indices: 90883217--90883439 Score: 327
Period size: 82 Copynumber: 2.8 Consensus size: 82
90883207 AACCCAAGTA
* *
90883217 CCTTCGGGATTTAG-CCGGATATAGCA--ACTCGCAC-AATGCCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
90883278 AGTCACTAGCACAAATG
66 AGTCACTAGCACAAATG
*
90883295 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTT-GCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
90883359 TAGTCACTAGCACAAATG
65 TAGTCACTAGCACAAATG
* *
90883377 CCTTCGGGACTTAGCCCGGATATGGTCACTA---GCACAAATGCCTTCGGGACTTAGCCCAGATA
1 CCTTCGGGACTTAGCCCGGATATAG-CACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
90883439 T
65 T
90883440 CATCCGAATA
Statistics
Matches: 132, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
78 13 0.10
79 31 0.23
80 10 0.08
82 62 0.47
83 16 0.12
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (82 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
AGTCACTAGCACAAATG
Found at i:90888931 original size:15 final size:15
Alignment explanation
Indices: 90888907--90888936 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
90888897 CCAAATAATA
*
90888907 ATATATATTTATCTT
1 ATATACATTTATCTT
90888922 ATATACATTTATCTT
1 ATATACATTTATCTT
90888937 CTAAATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATACATTTATCTT
Found at i:90889000 original size:22 final size:22
Alignment explanation
Indices: 90888970--90889011 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
90888960 ACTCTAAATT
90888970 TAAAACCCTAAACCTGAGACTC
1 TAAAACCCTAAACCTGAGACTC
* *
90888992 TAAACCCCTAAACCTTAGAC
1 TAAAACCCTAAACCTGAGAC
90889012 CACAAACACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.33, G:0.07, T:0.19
Consensus pattern (22 bp):
TAAAACCCTAAACCTGAGACTC
Found at i:90889330 original size:25 final size:26
Alignment explanation
Indices: 90889302--90889354 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
90889292 TTTCTAGCTA
90889302 ATAGTTCAAC-AAATGCTAATTCCAC
1 ATAGTTCAACAAAATGCTAATTCCAC
90889327 ATAGTTCAACAAAATGCTAATTCCAC
1 ATAGTTCAACAAAATGCTAATTCCAC
90889353 AT
1 AT
90889355 TCAAAATCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.37
26 17 0.63
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.28
Consensus pattern (26 bp):
ATAGTTCAACAAAATGCTAATTCCAC
Found at i:90889552 original size:36 final size:38
Alignment explanation
Indices: 90889511--90889586 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 38
90889501 CTTCAAATAC
* * *
90889511 TAGTTAACTCCTAAACC-G-TAAATCTTAAACCATATA
1 TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
90889547 TAGTTAACTCATAAACCTGCTTAAACCCTAAACCATATA
1 TAGTTAACTCATAAACCTGC-TAAACCCTAAACCATATA
90889586 T
1 T
90889587 CTTAAACTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
39 17 0.50
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (38 bp):
TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
Found at i:90900897 original size:40 final size:41
Alignment explanation
Indices: 90900810--90900961 Score: 127
Period size: 40 Copynumber: 3.8 Consensus size: 41
90900800 AATTGAATGA
* * * * **
90900810 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAGAGGCA-TAC
* * *
90900850 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGAGGCATAC
* *
90900891 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTG-AGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCAGAGGCATAC
*
90900930 TATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCA
90900962 AATCGTGATA
Statistics
Matches: 90, Mismatches: 14, Indels: 15
0.76 0.12 0.13
Matches are distributed among these distances:
38 4 0.04
39 5 0.06
40 76 0.84
41 4 0.04
42 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAGAGGCATAC
Found at i:90913539 original size:77 final size:78
Alignment explanation
Indices: 90913399--90913613 Score: 265
Period size: 77 Copynumber: 2.7 Consensus size: 78
90913389 GATGTCCGAG
* * * *
90913399 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCG
1 CTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT-CGGGCTAAGACCCGAAGGCATTCGTGCG
90913463 AGTTACTAAATCCGGA
63 AGTTACTAAATCCGGA
*
90913479 CTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCGGGCTAAG-CCCGAAGGCATTGGTGCGAG
1 CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATCGGGCTAAGACCCGAAGGCATTCGTGCGAG
*
90913542 TTACTAAATCCGGG
65 TTACTAAATCCGGA
* * * *
90913556 TTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTAC--TAATCGGGCTAAGACCCGAAGGCATT
90913614 TGAACGAGTA
Statistics
Matches: 120, Mismatches: 9, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
76 1 0.01
77 58 0.48
78 8 0.07
79 13 0.11
80 32 0.27
81 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
TACTAAATCCGGA
Found at i:90913611 original size:117 final size:118
Alignment explanation
Indices: 90913398--90913615 Score: 284
Period size: 117 Copynumber: 1.9 Consensus size: 118
90913388 TGATGTCCGA
* *
90913398 GCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCG
1 GCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCG
90913463 AGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCGG
66 AGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCGG
* * ** *
90913516 GCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTG
1 GCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTCGTG
* *
90913578 CGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 CGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
90913616 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
116 2 0.02
117 71 0.82
118 14 0.16
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (118 bp):
GCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCG
AGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCGG
Found at i:90913622 original size:40 final size:40
Alignment explanation
Indices: 90913393--90913615 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
90913383 TCGAATGATG
* * * *
90913393 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
90913433 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
90913473 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
90913512 T-CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
90913550 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
90913591 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90913616 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
37 23 0.14
38 11 0.07
39 11 0.07
40 109 0.67
41 9 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:90921638 original size:40 final size:39
Alignment explanation
Indices: 90921581--90921803 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 39
90921571 TCGAATGATG
* * *
90921581 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
90921621 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
90921661 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
90921700 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
90921738 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
90921779 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
90921804 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
37 14 0.08
38 21 0.13
39 21 0.13
40 100 0.61
41 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:90921740 original size:77 final size:80
Alignment explanation
Indices: 90921581--90921801 Score: 308
Period size: 77 Copynumber: 2.8 Consensus size: 80
90921571 TCGAATGATG
* * * *
90921581 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
90921645 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
*
90921661 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
90921723 -GTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* * * *
90921738 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
90921802 TGAACGAGTA
Statistics
Matches: 127, Mismatches: 9, Indels: 11
0.86 0.06 0.07
Matches are distributed among these distances:
76 1 0.01
77 49 0.39
78 21 0.17
79 23 0.18
80 25 0.20
81 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:90921800 original size:117 final size:119
Alignment explanation
Indices: 90921581--90921803 Score: 303
Period size: 117 Copynumber: 1.9 Consensus size: 119
90921571 TCGAATGATG
* *
90921581 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTC
90921646 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
66 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
* * **
90921700 TCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
* * *
90921762 TGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
65 CGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
90921804 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
116 2 0.02
117 62 0.67
118 17 0.18
119 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:90921833 original size:117 final size:118
Alignment explanation
Indices: 90921581--90921835 Score: 279
Period size: 117 Copynumber: 2.2 Consensus size: 118
90921571 TCGAATGATG
* * *
90921581 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTC
1 TCCGGGCTAA-ACCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTC
**
90921646 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
65 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAA
* * * ** *
90921700 TCCGGGCTAAGCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 TCCGGGCTAAACCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTC
* *
90921763 GTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAG-TAGCTATA
65 GTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTTA-CTA-A
* *
90921818 TCC-GGTTAAATCCGAAGG
1 TCCGGGCTAAACCCGAAGG
90921836 TACGTGATTC
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
116 4 0.03
117 81 0.70
118 21 0.18
119 10 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAACCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCG
TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAA
Found at i:90929957 original size:40 final size:40
Alignment explanation
Indices: 90929765--90929986 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
90929755 TCGAATGATG
* * *
90929765 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
90929805 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
90929845 T-CGGACTAAGAT-CCGAAGGCATTTGTGC-AGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
90929883 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
90929921 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
90929962 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90929987 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
37 6 0.04
38 38 0.23
39 44 0.27
40 65 0.40
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:90931576 original size:31 final size:33
Alignment explanation
Indices: 90931516--90931576 Score: 83
Period size: 31 Copynumber: 1.9 Consensus size: 33
90931506 TGTGATCCAC
*
90931516 ATGGGCAAGGCCAATCTGGGCGTGTGGGCCCAT
1 ATGGGCAAGGCCAATCTGGGCATGTGGGCCCAT
90931549 ATGGGCAA-GCCACA-C-GGGCATGTGGGCC
1 ATGGGCAAGGCCA-ATCTGGGCATGTGGGCC
90931577 TATTATATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 12 0.46
32 5 0.19
33 9 0.35
ACGTcount: A:0.20, C:0.26, G:0.39, T:0.15
Consensus pattern (33 bp):
ATGGGCAAGGCCAATCTGGGCATGTGGGCCCAT
Found at i:90939985 original size:65 final size:65
Alignment explanation
Indices: 90939903--90940034 Score: 219
Period size: 65 Copynumber: 2.0 Consensus size: 65
90939893 TACTTTGTTT
* *
90939903 ACTTTTTCATGTTTTATAGTGAATATTGAAGCTAACTCGGACTAGGAGTCATCGGAGATTGCATC
1 ACTTTTTCATGTTTTATAGTGAATATCGAAGCTAACTCAGACTAGGAGTCATCGGAGATTGCATC
* * *
90939968 ACTTTTTCGTGTTTTATAGTGAATATCGAAGCTAACTCAGACTGGGAGTCGTCGGAGATTGCATC
1 ACTTTTTCATGTTTTATAGTGAATATCGAAGCTAACTCAGACTAGGAGTCATCGGAGATTGCATC
90940033 AC
1 AC
90940035 ACTATCGAGA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (65 bp):
ACTTTTTCATGTTTTATAGTGAATATCGAAGCTAACTCAGACTAGGAGTCATCGGAGATTGCATC
Found at i:90944529 original size:12 final size:12
Alignment explanation
Indices: 90944504--90944550 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
90944494 GAATGGTAGT
*
90944504 ATAGTAATAGTA
1 ATAGTAATAATA
* *
90944516 ATAATAATATTA
1 ATAGTAATAATA
90944528 ATAGTAATAATA
1 ATAGTAATAATA
90944540 CA-AGTAATAAT
1 -ATAGTAATAAT
90944551 TTAGAAATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
12 29 0.97
13 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (12 bp):
ATAGTAATAATA
Found at i:90944547 original size:18 final size:18
Alignment explanation
Indices: 90944504--90944548 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
90944494 GAATGGTAGT
90944504 ATAGTAATAGTAATAATA
1 ATAGTAATAGTAATAATA
*
90944522 ATATTAATAGTAATAATA
1 ATAGTAATAGTAATAATA
90944540 CA-AGTAATA
1 -ATAGTAATA
90944549 ATTTAGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (18 bp):
ATAGTAATAGTAATAATA
Found at i:90946483 original size:8 final size:8
Alignment explanation
Indices: 90946462--90946490 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
90946452 TGGGTCTTCA
90946462 GTGGGTTT
1 GTGGGTTT
90946470 -TGGGTTT
1 GTGGGTTT
90946477 GTGGGTTT
1 GTGGGTTT
90946485 GTGGGT
1 GTGGGT
90946491 CTGTTAGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (8 bp):
GTGGGTTT
Found at i:90947315 original size:44 final size:44
Alignment explanation
Indices: 90947267--90947413 Score: 145
Period size: 44 Copynumber: 3.3 Consensus size: 44
90947257 AACCTGTTAT
*
90947267 CCTACTGCTTAGGGGTTTAAGGCCCATCGTATTTGATCTGTTTC
1 CCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTC
* * ** ** * * * *
90947311 CCTACTACTTA-GGGTGATAAGATCTGT-GGATCTTCAGCCCGTTTC
1 CCTACTGCTTAGGGGT-TTAAGGCCCATCGCAT-TTGA-TCTGTTTC
*
90947356 CCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGCTTC
1 CCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTC
90947400 CCTACTGCTTAGGG
1 CCTACTGCTTAGGG
90947414 TGATAAGATC
Statistics
Matches: 77, Mismatches: 21, Indels: 10
0.71 0.19 0.09
Matches are distributed among these distances:
43 7 0.09
44 38 0.49
45 25 0.32
46 7 0.09
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (44 bp):
CCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTC
Found at i:90947366 original size:302 final size:302
Alignment explanation
Indices: 90946820--90947375 Score: 1058
Period size: 302 Copynumber: 1.8 Consensus size: 302
90946810 GAGATTTGCT
90946820 ATCTTTAGTCTACTCTGCTACAATTTTTAGTGAGATAAGACATGTGACTTCAATTAACTCTACTA
1 ATCTTTAGTCTACTCTGCTACAATTTTTAGTGAGATAAGACATGTGACTTCAATTAACTCTACTA
90946885 AAGCTTCAAGGGGATCTGCTGTGGTTGGATCAACTCCACTGCTGTTTCAGGGAGAAGACATTTGA
66 AAGCTTCAAGGGGATCTGCTGTGGTTGGATCAACTCCACTGCTGTTTCAGGGAGAAGACATTTGA
90946950 TTTTCAACCTGTTATCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTCCCTACT
131 TTTTCAACCTGTTATCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTCCCTACT
*
90947015 ACTTAGGGTGATAAGATCTATGGATCTTCAGTCCGTTTCCCTACTGCTTAGGGGGTTAAAGCTTG
196 ACTTAGGGTGATAAGATCTATGGATCTTCAGCCCGTTTCCCTACTGCTTAGGGGGTTAAAGCTTG
90947080 GTGGTTTGAATCTGCTTCACTGCAACTTCAGGAAGGCAAGCA
261 GTGGTTTGAATCTGCTTCACTGCAACTTCAGGAAGGCAAGCA
* *
90947122 ATCTTTAGTCTGCTCTGCTACAATTTTTAGTGAGATAAGACATGTGACTTCAATTAACTCTACTG
1 ATCTTTAGTCTACTCTGCTACAATTTTTAGTGAGATAAGACATGTGACTTCAATTAACTCTACTA
90947187 AAGCTTCAAGGGGATCTGCTGTGGTTGGATCAACTCCACTGCTGTTTCAGGGAGAAGACATTTGA
66 AAGCTTCAAGGGGATCTGCTGTGGTTGGATCAACTCCACTGCTGTTTCAGGGAGAAGACATTTGA
*
90947252 TTTTCAACCTGTTATCCTACTGCTTAGGGGTTTAAGGCCCATCGTATTTGATCTGTTTCCCTACT
131 TTTTCAACCTGTTATCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTCCCTACT
* *
90947317 ACTTAGGGTGATAAGATCTGTGGATCTTCAGCCCGTTTCCCTACTGCTTAGGGGTTTAA
196 ACTTAGGGTGATAAGATCTATGGATCTTCAGCCCGTTTCCCTACTGCTTAGGGGGTTAA
90947376 GGCCCATCGC
Statistics
Matches: 248, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
302 248 1.00
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.35
Consensus pattern (302 bp):
ATCTTTAGTCTACTCTGCTACAATTTTTAGTGAGATAAGACATGTGACTTCAATTAACTCTACTA
AAGCTTCAAGGGGATCTGCTGTGGTTGGATCAACTCCACTGCTGTTTCAGGGAGAAGACATTTGA
TTTTCAACCTGTTATCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTCCCTACT
ACTTAGGGTGATAAGATCTATGGATCTTCAGCCCGTTTCCCTACTGCTTAGGGGGTTAAAGCTTG
GTGGTTTGAATCTGCTTCACTGCAACTTCAGGAAGGCAAGCA
Found at i:90947418 original size:89 final size:87
Alignment explanation
Indices: 90947257--90947639 Score: 360
Period size: 89 Copynumber: 4.4 Consensus size: 87
90947247 TTTGATTTTC
* *
90947257 AACCTGTTAT-CCTACTGCTTAGGGGTTTAAGGCCCATCGTATTTGATCTGTTTCCCTACTACTT
1 AACCTGTT-TCCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTCCCTACTGCTT
*
90947321 AGGGTGATAAGATCTGTGGATCTT
65 AGGGTGATAAGATCTGTGAAT-TT
* * *
90947345 CAGCCCGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGCTTCCCTACTGCTT
1 -AACCTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTCCCTACTGCTT
* * *
90947410 AGGGTGATAAGATCTTATGAACGTC
65 AGGGTGATAAGATC-TGTGAA-TTT
* * * * * * * * * *
90947435 AGCTTGTTACCCTACTGCTTAGAGAG-TTAAAGCTCGTCGCCTTCGATCTATTTCCCTACTGCTT
1 AACCTGTTTCCCTACTGCTTAG-GGGTTTAAGGCCCATCGCATTTGATCTGTTTCCCTACTGCTT
* *
90947499 AGGGGGTTAAGATCTGTGAATTT
65 AGGGTGATAAGATCTGTGAATTT
* * * * ** ** * *
90947522 AACCTATTTCCCTACTACTTAGGGATTTAAGGTCTGT-AAATTTAACCTGTTTCCCTACTGCTTA
1 AACCTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTCCCTACTGCTTA
* * *
90947586 GGGAT-TTAAGGTCTGTAAATTT
66 GGG-TGATAAGATCTGTGAATTT
*
90947608 AACCTGTTTCCCTACTGCTTAGGGATTTAAGG
1 AACCTGTTTCCCTACTGCTTAGGGGTTTAAGG
90947640 TTTGTAAATT
Statistics
Matches: 240, Mismatches: 48, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
86 69 0.29
87 25 0.10
88 6 0.03
89 133 0.55
90 7 0.03
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (87 bp):
AACCTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTTGATCTGTTTCCCTACTGCTTA
GGGTGATAAGATCTGTGAATTT
Found at i:90947681 original size:43 final size:43
Alignment explanation
Indices: 90947485--90947674 Score: 281
Period size: 43 Copynumber: 4.4 Consensus size: 43
90947475 CTTCGATCTA
** * * *
90947485 TTTCCCTACTGCTTAGGGGGTTAAGATCTGTGAATTTAACCTA
1 TTTCCCTACTGCTTAGGGATTTAAGGTCTGTAAATTTAACCTG
*
90947528 TTTCCCTACTACTTAGGGATTTAAGGTCTGTAAATTTAACCTG
1 TTTCCCTACTGCTTAGGGATTTAAGGTCTGTAAATTTAACCTG
90947571 TTTCCCTACTGCTTAGGGATTTAAGGTCTGTAAATTTAACCTG
1 TTTCCCTACTGCTTAGGGATTTAAGGTCTGTAAATTTAACCTG
* ** *
90947614 TTTCCCTACTGCTTAGGGATTTAAGGTTTGTAAATTTGGCTTG
1 TTTCCCTACTGCTTAGGGATTTAAGGTCTGTAAATTTAACCTG
*
90947657 TTACCCTACTGCTTAGGG
1 TTTCCCTACTGCTTAGGG
90947675 GGTTAAGCCC
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 135 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.39
Consensus pattern (43 bp):
TTTCCCTACTGCTTAGGGATTTAAGGTCTGTAAATTTAACCTG
Found at i:90947702 original size:86 final size:86
Alignment explanation
Indices: 90947488--90947734 Score: 212
Period size: 86 Copynumber: 2.9 Consensus size: 86
90947478 CGATCTATTT
* ** ** * * *
90947488 CCCTACTGCTTAGGGGGTTAAGATCTGTGAATTTAACCTATTTCCCTACTACTTAGGGATTTAAG
1 CCCTACTGCTTAGGGAGTTAAGGCCCATAAATTTAACATGTTTCCCTACTACTTAGGGATTTAAG
*
90947553 GTCTGTAAATTTAACCTGTTT
66 GTCTGTAAATTTAACCTGTTA
* * ** * *
90947574 CCCTACTGCTTAGGGATTTAAGGTCTGTAAATTTAACCTGTTTCCCTACTGCTTAGGGATTTAAG
1 CCCTACTGCTTAGGGAGTTAAGGCCCATAAATTTAACATGTTTCCCTACTACTTAGGGATTTAAG
* ** *
90947639 GTTTGTAAATTTGGCTTGTTA
66 GTCTGTAAATTTAACCTGTTA
* * * * * *
90947660 CCCTACTGCTTAGGGGGTTAA-GCCCAT-CATCTTCGATATGTTTCCCTACTTCTTAGGG-GTTA
1 CCCTACTGCTTAGGGAGTTAAGGCCCATAAAT-TT-AACATGTTTCCCTACTACTTAGGGATTTA
* *
90947722 AGATCTATAAATT
64 AGGTCTGTAAATT
90947735 CAGTCTGCTC
Statistics
Matches: 134, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
84 2 0.01
85 18 0.13
86 114 0.85
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (86 bp):
CCCTACTGCTTAGGGAGTTAAGGCCCATAAATTTAACATGTTTCCCTACTACTTAGGGATTTAAG
GTCTGTAAATTTAACCTGTTA
Found at i:90959888 original size:12 final size:12
Alignment explanation
Indices: 90959863--90959909 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
90959853 GAATGGTAGT
*
90959863 ATAGTAATAGTA
1 ATAGTAATAATA
* *
90959875 ATAATAATATTA
1 ATAGTAATAATA
90959887 ATAGTAATAATA
1 ATAGTAATAATA
90959899 CA-AGTAATAAT
1 -ATAGTAATAAT
90959910 TTAGAAATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
12 29 0.97
13 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (12 bp):
ATAGTAATAATA
Found at i:90959906 original size:18 final size:18
Alignment explanation
Indices: 90959863--90959907 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
90959853 GAATGGTAGT
90959863 ATAGTAATAGTAATAATA
1 ATAGTAATAGTAATAATA
*
90959881 ATATTAATAGTAATAATA
1 ATAGTAATAGTAATAATA
90959899 CA-AGTAATA
1 -ATAGTAATA
90959908 ATTTAGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (18 bp):
ATAGTAATAGTAATAATA
Found at i:90961835 original size:14 final size:16
Alignment explanation
Indices: 90961816--90961863 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 16
90961806 GTTTGGGTCT
90961816 TTAGT-GGTTT-TGGG
1 TTAGTGGGTTTGTGGG
90961830 TTAGTGGGTTTGTGGG
1 TTAGTGGGTTTGTGGG
* *
90961846 TCTATTGGGTTTATGGG
1 T-TAGTGGGTTTGTGGG
90961863 T
1 T
90961864 AAGTTATTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 5 0.17
15 5 0.17
16 5 0.17
17 14 0.48
ACGTcount: A:0.08, C:0.02, G:0.42, T:0.48
Consensus pattern (16 bp):
TTAGTGGGTTTGTGGG
Found at i:90974902 original size:61 final size:63
Alignment explanation
Indices: 90974769--90974902 Score: 152
Period size: 60 Copynumber: 2.2 Consensus size: 63
90974759 ACTGCGCCTA
* *
90974769 AGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCAT
1 AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATATGGGCCAT
* * * * * *
90974831 AGCCC-CTTACAG-TATCAGAG-TATACTGGGCC-TAGCCCATATCAGTGTCAATATGGGTCGT
1 AGCCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATATGGGCCAT
90974891 AGCCCTATTACA
1 AGCCCTATTACA
90974903 AGTCGAGATA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
60 30 0.50
61 22 0.37
62 8 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (63 bp):
AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATATGGGCCAT
Found at i:90974978 original size:19 final size:20
Alignment explanation
Indices: 90974936--90974979 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
90974926 CTATATTAAC
** *
90974936 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
90974956 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
90974975 ACAGT
1 ACAGT
90974980 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:90975628 original size:16 final size:15
Alignment explanation
Indices: 90975607--90975636 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
90975597 CGAAATGCTG
90975607 GCTTTTCGGCATTTTT
1 GCTTTTCGGC-TTTTT
90975623 GCTTTTCGGCTTTT
1 GCTTTTCGGCTTTT
90975637 GCCGATCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.03, C:0.20, G:0.20, T:0.57
Consensus pattern (15 bp):
GCTTTTCGGCTTTTT
Found at i:90977720 original size:21 final size:21
Alignment explanation
Indices: 90977694--90977738 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
90977684 AGCACGAGAC
90977694 GTTACCAGACTTATCTTACTT
1 GTTACCAGACTTATCTTACTT
90977715 GTTACCAGACTTATCTTACTT
1 GTTACCAGACTTATCTTACTT
90977736 GTT
1 GTT
90977739 CGAGGCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (21 bp):
GTTACCAGACTTATCTTACTT
Found at i:90978439 original size:48 final size:48
Alignment explanation
Indices: 90978368--90978463 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
90978358 TTCTATCTCA
90978368 TTCACCACTTAATTCCATTTCTAAAATTTTTAGTGATTTTTCAAAACC
1 TTCACCACTTAATTCCATTTCTAAAATTTTTAGTGATTTTTCAAAACC
* *
90978416 TTCACCACTTAATTTCATTTCTAAAATTTTTATTGATTTTTCAAAACC
1 TTCACCACTTAATTCCATTTCTAAAATTTTTAGTGATTTTTCAAAACC
90978464 ACGTCACTGC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.31, C:0.20, G:0.03, T:0.46
Consensus pattern (48 bp):
TTCACCACTTAATTCCATTTCTAAAATTTTTAGTGATTTTTCAAAACC
Found at i:90982693 original size:74 final size:74
Alignment explanation
Indices: 90982609--90982756 Score: 287
Period size: 74 Copynumber: 2.0 Consensus size: 74
90982599 TAAAACACAT
*
90982609 GAACTACTACCTTTAACAATTCTTTGAACTAAATCAAATCCAAATAACCCTAAAATTCATTAGTT
1 GAACTACTACCTTTAACAATTCTTTGAACTAAATCAAATCCAAATAACCATAAAATTCATTAGTT
90982674 TATTAACAC
66 TATTAACAC
90982683 GAACTACTACCTTTAACAATTCTTTGAACTAAATCAAATCCAAATAACCATAAAATTCATTAGTT
1 GAACTACTACCTTTAACAATTCTTTGAACTAAATCAAATCCAAATAACCATAAAATTCATTAGTT
90982748 TATTAACAC
66 TATTAACAC
90982757 AAATTTGCAT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.32
Consensus pattern (74 bp):
GAACTACTACCTTTAACAATTCTTTGAACTAAATCAAATCCAAATAACCATAAAATTCATTAGTT
TATTAACAC
Found at i:90982740 original size:36 final size:36
Alignment explanation
Indices: 90982626--90982740 Score: 83
Period size: 36 Copynumber: 3.1 Consensus size: 36
90982616 TACCTTTAAC
*
90982626 AATTCTTTGAACTAAATCAAATCCAAATAACCCTAA
1 AATTCTTTGAACTAAATCAAATCCAAATAACCATAA
* * ** * * * *
90982662 AATTCATT--AGTTTATTAACA-CGAACTACTACCTTTAA
1 AATTCTTTGAACTAAATCAA-ATCCAAATA--ACC-ATAA
90982699 CAATTCTTTGAACTAAATCAAATCCAAATAACCATAA
1 -AATTCTTTGAACTAAATCAAATCCAAATAACCATAA
90982736 AATTC
1 AATTC
90982741 ATTAGTTTAT
Statistics
Matches: 55, Mismatches: 16, Indels: 16
0.63 0.18 0.18
Matches are distributed among these distances:
34 11 0.20
35 1 0.02
36 15 0.27
37 6 0.11
38 10 0.18
39 1 0.02
40 11 0.20
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.31
Consensus pattern (36 bp):
AATTCTTTGAACTAAATCAAATCCAAATAACCATAA
Found at i:90985013 original size:14 final size:14
Alignment explanation
Indices: 90984994--90985024 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
90984984 TAATGTGTAA
90984994 TTTAATACATGAAT
1 TTTAATACATGAAT
90985008 TTTAATACATGAAT
1 TTTAATACATGAAT
90985022 TTT
1 TTT
90985025 TATTTGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (14 bp):
TTTAATACATGAAT
Found at i:90987457 original size:86 final size:85
Alignment explanation
Indices: 90987144--90987458 Score: 346
Period size: 86 Copynumber: 3.7 Consensus size: 85
90987134 CAATTACTGC
* * ** * ** * * *
90987144 CACTTGTTGTGAGTGCACAACATGGTTGCAAATTAAACAAACTGTCACTGGGTTTGTGGACGAGC
1 CACTTATTATGAGTGCACAACATATTTGCAGATTAAACAAACTACCACTGGTTTTGTAGATGAGC
* *
90987209 CACATATTTGCAGTTACTAC
66 CACATATTTGTAGTTACTAT
* * * * *
90987229 CACTTGTTGTGAGTGCACAACATATTTGTAGATTAAACAAA-TAGCAACTGGGTTTTGCAGATGA
1 CACTTATTATGAGTGCACAACATATTTGCAGATTAAACAAACTA-CCACT-GGTTTTGTAGATGA
* *
90987293 GCCACATATTTTTAGTTACTGT
64 GCCACATATTTGTAGTTACTAT
** *
90987315 CACTTGA-TATGAGTGCACAACATATTCACAGATTAAACAAACTGCCACTAGGTTTTGTAGATGA
1 CACTT-ATTATGAGTGCACAACATATTTGCAGATTAAACAAACTACCACT-GGTTTTGTAGATGA
*
90987379 GCCATATATTTGTAGTTACTAT
64 GCCACATATTTGTAGTTACTAT
* *
90987401 CACTTATTATGGGTGCACAACATATTTGCAGATTAAACAAACTACCATTGGATTTTGT
1 CACTTATTATGAGTGCACAACATATTTGCAGATTAAACAAACTACCACTGG-TTTTGT
90987459 GGACGCGCCA
Statistics
Matches: 192, Mismatches: 32, Indels: 11
0.82 0.14 0.05
Matches are distributed among these distances:
84 1 0.01
85 43 0.22
86 147 0.77
87 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (85 bp):
CACTTATTATGAGTGCACAACATATTTGCAGATTAAACAAACTACCACTGGTTTTGTAGATGAGC
CACATATTTGTAGTTACTAT
Found at i:90988042 original size:28 final size:28
Alignment explanation
Indices: 90988011--90988090 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 28
90988001 TGTTTTTTGT
*
90988011 AAAATAGAAGCAAAACTGTAAAATCTAA
1 AAAATAGAAGTAAAACTGTAAAATCTAA
** * * *
90988039 AAAATAGGGGTAAAATTATGAAATCTAA
1 AAAATAGAAGTAAAACTGTAAAATCTAA
*
90988067 AAAATA-AAGGTAAAACTGTCAAAT
1 AAAATAGAA-GTAAAACTGTAAAAT
90988091 TTGTAAAATA
Statistics
Matches: 40, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (28 bp):
AAAATAGAAGTAAAACTGTAAAATCTAA
Found at i:90988226 original size:18 final size:18
Alignment explanation
Indices: 90988199--90988241 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
90988189 TATGCCTAGA
*
90988199 TTACACGGCATTAGGTTG
1 TTACATGGCATTAGGTTG
90988217 TTACATGGCATTAGGTTG
1 TTACATGGCATTAGGTTG
90988235 TTACATG
1 TTACATG
90988242 ATTTTGAGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (18 bp):
TTACATGGCATTAGGTTG
Found at i:90993926 original size:7 final size:7
Alignment explanation
Indices: 90993914--90993990 Score: 127
Period size: 7 Copynumber: 11.0 Consensus size: 7
90993904 GTTCAAAAAG
90993914 CCTTGCC
1 CCTTGCC
90993921 CCTTGCC
1 CCTTGCC
90993928 CCTTGCC
1 CCTTGCC
90993935 CCTTGCC
1 CCTTGCC
*
90993942 CCTTGCT
1 CCTTGCC
*
90993949 CCTTGCT
1 CCTTGCC
90993956 CCTTGCC
1 CCTTGCC
*
90993963 CCTTGCT
1 CCTTGCC
90993970 CCTTGCC
1 CCTTGCC
90993977 CCTTGCC
1 CCTTGCC
90993984 CCTTGCC
1 CCTTGCC
90993991 TGTCATAGCA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 66 1.00
ACGTcount: A:0.00, C:0.53, G:0.14, T:0.32
Consensus pattern (7 bp):
CCTTGCC
Found at i:91004649 original size:14 final size:14
Alignment explanation
Indices: 91004630--91004658 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
91004620 TAAATAAAGA
91004630 AAAAATAGATAGAT
1 AAAAATAGATAGAT
91004644 AAAAATAGATAGAT
1 AAAAATAGATAGAT
91004658 A
1 A
91004659 GATGAGAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.21
Consensus pattern (14 bp):
AAAAATAGATAGAT
Found at i:91010232 original size:21 final size:20
Alignment explanation
Indices: 91010202--91010240 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
91010192 ACGCCTACAA
91010202 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTGGATTTAAG
91010222 AAAGAGTCGCTTGGATTTA
1 AAAGA-TCGCTTGGATTTA
91010241 TCCATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
AAAGATCGCTTGGATTTAAG
Found at i:91010411 original size:16 final size:15
Alignment explanation
Indices: 91010384--91010450 Score: 63
Period size: 16 Copynumber: 4.6 Consensus size: 15
91010374 TACCATTTCA
91010384 ATATATAATTTAAAT
1 ATATATAATTTAAAT
91010399 ATATATAAATTTAAAT
1 ATATAT-AATTTAAAT
91010415 ATAT-TAA--TAATAT
1 ATATATAATTTAA-AT
*
91010428 ATAAATAATATT-AAT
1 ATATATAAT-TTAAAT
91010443 A-ATATAAT
1 ATATATAAT
91010451 AATATAGAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
12 3 0.07
13 5 0.11
14 11 0.25
15 10 0.23
16 14 0.32
17 1 0.02
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATATAATTTAAAT
Found at i:91010428 original size:11 final size:11
Alignment explanation
Indices: 91010412--91010454 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
91010402 TATAAATTTA
91010412 AATATATTAAT
1 AATATATTAAT
*
91010423 AATATATAAAT
1 AATATATTAAT
91010434 -A-ATATTAAT
1 AATATATTAAT
*
91010443 AATATAATAAT
1 AATATATTAAT
91010454 A
1 A
91010455 TAGAAAGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
11 18 0.67
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATTAAT
Found at i:91010440 original size:20 final size:19
Alignment explanation
Indices: 91010394--91010448 Score: 71
Period size: 20 Copynumber: 3.0 Consensus size: 19
91010384 ATATATAATT
*
91010394 TAAATATA-T-ATAA-ATT
1 TAAATATATTAATAATATA
91010410 TAAATATATTAATAATATA
1 TAAATATATTAATAATATA
91010429 TAAATAATATTAATAATATA
1 TAAAT-ATATTAATAATATA
91010449 ATAATATAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
16 8 0.24
17 1 0.03
18 4 0.12
19 7 0.21
20 14 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAATATATTAATAATATA
Found at i:91012196 original size:21 final size:21
Alignment explanation
Indices: 91012170--91012238 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
91012160 TCACTTCGTT
91012170 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
* *
91012191 TCTTTTTGTCCAAGTTGCTTT
1 TCTTTTTGTCCAAGTTACTTC
* * *
91012212 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
91012233 -CTTTTT
1 TCTTTTT
91012239 TCTTTGTGAG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
20 6 0.15
21 35 0.85
ACGTcount: A:0.12, C:0.23, G:0.09, T:0.57
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:91018204 original size:93 final size:93
Alignment explanation
Indices: 91018092--91018263 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
91018082 CGCCCATAAG
* * *
91018092 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
91018157 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
91018185 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
91018250 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
91018264 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91018260 original size:46 final size:46
Alignment explanation
Indices: 91018085--91018260 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
91018075 TGTAACCCGC
* * *
91018085 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
91018131 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
91018181 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
91018224 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
91018261 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91021517 original size:29 final size:29
Alignment explanation
Indices: 91021475--91021530 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
91021465 CTTAACCAAC
91021475 AAGCTAGGTTACTTGGCAAGTGAGAAAAT
1 AAGCTAGGTTACTTGGCAAGTGAGAAAAT
91021504 AAGCTAGGTTACTTGGCAAGTGAGAAA
1 AAGCTAGGTTACTTGGCAAGTGAGAAA
91021531 CTAACTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.23
Consensus pattern (29 bp):
AAGCTAGGTTACTTGGCAAGTGAGAAAAT
Found at i:91021894 original size:14 final size:14
Alignment explanation
Indices: 91021873--91021922 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
91021863 TTTTTTGAAT
*
91021873 AAAT-ATTTTCATA
1 AAATAATTTTCAAA
*
91021886 AAATAATTTTTAAA
1 AAATAATTTTCAAA
*
91021900 AAATAATTTTTAAAA
1 AAATAA-TTTTCAAA
91021915 AAATAATT
1 AAATAATT
91021923 AAAATGTGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 4 0.12
14 15 0.47
15 13 0.41
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (14 bp):
AAATAATTTTCAAA
Found at i:91021896 original size:15 final size:14
Alignment explanation
Indices: 91021885--91021922 Score: 67
Period size: 14 Copynumber: 2.6 Consensus size: 14
91021875 ATATTTTCAT
91021885 AAAATAATTTTTAA
1 AAAATAATTTTTAA
91021899 AAAATAATTTTTAAA
1 AAAATAATTTTT-AA
91021914 AAAATAATT
1 AAAATAATT
91021923 AAAATGTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAAATAATTTTTAA
Found at i:91022042 original size:2 final size:2
Alignment explanation
Indices: 91022035--91022062 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
91022025 GAACATACAA
91022035 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91022063 CCACAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91022408 original size:18 final size:17
Alignment explanation
Indices: 91022364--91022408 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
91022354 TTATATATTT
*
91022364 TTATTATTAAACAAAAG
1 TTATTATTAAACAAAAA
*
91022381 TTATTCATTAATCTAAAAA
1 TTATT-ATTAAAC-AAAAA
91022400 TTATTATTA
1 TTATTATTA
91022409 TTTATTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 5 0.21
18 10 0.42
19 9 0.38
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (17 bp):
TTATTATTAAACAAAAA
Found at i:91028260 original size:20 final size:20
Alignment explanation
Indices: 91028235--91028399 Score: 111
Period size: 20 Copynumber: 8.2 Consensus size: 20
91028225 ACACACGTGA
91028235 CCCTGTTTGTACTTCGGTAC
1 CCCTGTTTGTACTTCGGTAC
* ** *
91028255 CCCTG-TT-CACATATAAGTGC
1 CCCTGTTTGTAC-T-TCGGTAC
*
91028275 CCCTGTTTGTACTTTGGTAC
1 CCCTGTTTGTACTTCGGTAC
* * * * ** *
91028295 CACTGTTCGCACATAAGTGC
1 CCCTGTTTGTACTTCGGTAC
* *
91028315 CCCTGTTTGTACTTCGATAA
1 CCCTGTTTGTACTTCGGTAC
*
91028335 CCCTATTTGTACTTCGGTAC
1 CCCTGTTTGTACTTCGGTAC
* * *
91028355 CCCTTTTTGTACAT-GTGTGC
1 CCCTGTTTGTACTTCG-GTAC
*
91028375 CCCTGTTTGTACTTTGGTAC
1 CCCTGTTTGTACTTCGGTAC
91028395 CCCTG
1 CCCTG
91028400 AACGCATTTG
Statistics
Matches: 106, Mismatches: 33, Indels: 12
0.70 0.22 0.08
Matches are distributed among these distances:
18 2 0.02
19 4 0.04
20 94 0.89
21 4 0.04
22 2 0.02
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.38
Consensus pattern (20 bp):
CCCTGTTTGTACTTCGGTAC
Found at i:91028279 original size:40 final size:39
Alignment explanation
Indices: 91028186--91028330 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 39
91028176 AATGTTTGCA
* * *
91028186 AATATGTGCCCCTGATTGTACTTCGGTACCCTTGATTGCAC
1 AATAAGTGCCCCTGTTTGTACTTCGGTACCCCTG-TT-CAC
* * *
91028227 -ACACGTGACCCTGTTTGTACTTCGGTACCCCTGTTCAC
1 AATAAGTGCCCCTGTTTGTACTTCGGTACCCCTGTTCAC
* * *
91028265 ATATAAGTGCCCCTGTTTGTACTTTGGTACCACTGTTCGC
1 A-ATAAGTGCCCCTGTTTGTACTTCGGTACCCCTGTTCAC
91028305 ACATAAGTGCCCCTGTTTGTACTTCG
1 A-ATAAGTGCCCCTGTTTGTACTTCG
91028331 ATAACCCTAT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 3 0.03
39 2 0.02
40 84 0.94
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.34
Consensus pattern (39 bp):
AATAAGTGCCCCTGTTTGTACTTCGGTACCCCTGTTCAC
Found at i:91028345 original size:60 final size:60
Alignment explanation
Indices: 91028275--91028388 Score: 156
Period size: 60 Copynumber: 1.9 Consensus size: 60
91028265 ATATAAGTGC
* *
91028275 CCCTGTTTGTACTTTGGTACCACTGTTCGCACATAAGTGCCCCTGTTTGTACTTCGATAA
1 CCCTATTTGTACTTCGGTACCACTGTTCGCACATAAGTGCCCCTGTTTGTACTTCGATAA
* * * * **
91028335 CCCTATTTGTACTTCGGTACCCCTTTTTGTACATGTGTGCCCCTGTTTGTACTT
1 CCCTATTTGTACTTCGGTACCACTGTTCGCACATAAGTGCCCCTGTTTGTACTT
91028389 TGGTACCCCT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 46 1.00
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (60 bp):
CCCTATTTGTACTTCGGTACCACTGTTCGCACATAAGTGCCCCTGTTTGTACTTCGATAA
Found at i:91029867 original size:43 final size:43
Alignment explanation
Indices: 91029819--91029943 Score: 214
Period size: 43 Copynumber: 2.9 Consensus size: 43
91029809 CATTTATTCA
* *
91029819 AAAAAGCGCCTCTAAAAGTCATGGCCTTTAGCGGCGTTTGGAG
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGGAG
*
91029862 AAAAAGCGCCGCTAAATGTCGTGGCCTTTAGCGGCGTTTGGAG
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGGAG
*
91029905 AAGAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTT
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTT
91029944 TTCCCACAAA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 77 1.00
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (43 bp):
AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGGAG
Found at i:91030051 original size:31 final size:30
Alignment explanation
Indices: 91030016--91030081 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
91030006 CTTCCTGCAT
91030016 TAAAATCCAACC-AAATACAACAAATATAGCA
1 TAAAATCCAACCAAAATAC--CAAATATAGCA
* * *
91030047 TAAAATGCAGCCAAAATACCAAATTTAGCA
1 TAAAATCCAACCAAAATACCAAATATAGCA
91030077 TAAAA
1 TAAAA
91030082 AAATACAACC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 15 0.48
31 10 0.32
32 6 0.19
ACGTcount: A:0.56, C:0.20, G:0.06, T:0.18
Consensus pattern (30 bp):
TAAAATCCAACCAAAATACCAAATATAGCA
Found at i:91030361 original size:21 final size:21
Alignment explanation
Indices: 91030337--91030384 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
91030327 CGCTGCTGCC
*
91030337 GCTGCCGCTGCCTCCCTCGCT
1 GCTGCCGCTACCTCCCTCGCT
*
91030358 GCTGCCGCTACCTCCCTCTCT
1 GCTGCCGCTACCTCCCTCGCT
91030379 GCTGCC
1 GCTGCC
91030385 TCCGCTCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.52, G:0.21, T:0.25
Consensus pattern (21 bp):
GCTGCCGCTACCTCCCTCGCT
Found at i:91030821 original size:13 final size:14
Alignment explanation
Indices: 91030796--91030824 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91030786 TGATGAATTG
91030796 AATTAAACAATTAT
1 AATTAAACAATTAT
91030810 AATTAAAC-ATTAT
1 AATTAAACAATTAT
91030823 AA
1 AA
91030825 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:91031028 original size:16 final size:17
Alignment explanation
Indices: 91030991--91031029 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
91030981 AAAATATTAT
*
91030991 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
91031008 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
91031024 TTAATA
1 TTAATA
91031030 AAATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:91036060 original size:9 final size:9
Alignment explanation
Indices: 91036046--91036235 Score: 98
Period size: 9 Copynumber: 20.6 Consensus size: 9
91036036 TATTTAAGTA
91036046 TTATGTAAG
1 TTATGTAAG
91036055 TTATGTAAG
1 TTATGTAAG
*
91036064 TTATGATATG
1 TTATG-TAAG
* * *
91036074 ATATAT-AT
1 TTATGTAAG
*
91036082 TTATGTAAA
1 TTATGTAAG
* *
91036091 TTATAT-AT
1 TTATGTAAG
*
91036099 TTATCTAAG
1 TTATGTAAG
*
91036108 TTATATAAG
1 TTATGTAAG
91036117 TTATGTAAG
1 TTATGTAAG
*
91036126 TTATGTAAA
1 TTATGTAAG
*
91036135 TTATGATATAAAA
1 TTATG---T-AAG
*
91036148 TATATTTAAG
1 T-TATGTAAG
91036158 TATTATGTAAG
1 --TTATGTAAG
91036169 TTATGTAAG
1 TTATGTAAG
* *
91036178 TTATAT-AT
1 TTATGTAAG
* *
91036186 TTGTCTAAG
1 TTATGTAAG
*
91036195 TTATATAAG
1 TTATGTAAG
*
91036204 TTATGTACG
1 TTATGTAAG
*
91036213 TTCTGTAAG
1 TTATGTAAG
* *
91036222 TTATATAAA
1 TTATGTAAG
91036231 TTATG
1 TTATG
91036236 ATATCAAATA
Statistics
Matches: 137, Mismatches: 33, Indels: 22
0.71 0.17 0.11
Matches are distributed among these distances:
8 15 0.11
9 97 0.71
10 8 0.06
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:91036128 original size:71 final size:69
Alignment explanation
Indices: 91036046--91036208 Score: 193
Period size: 71 Copynumber: 2.3 Consensus size: 69
91036036 TATTTAAGTA
* * * *
91036046 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGT--ATTATATAAGTTATCTAAGTT
91036110 ATATAAG
64 ATAT-AG
* * *
91036117 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
*
91036182 ATAT
66 ATAG
* * *
91036186 TTGTCTAAGTTATATAAGTTATG
1 TTATGTAAGTTATGTAAGTTATG
91036209 TACGTTCTGT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
69 26 0.33
70 15 0.19
71 38 0.48
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (69 bp):
TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
ATAG
Found at i:91036130 original size:44 final size:44
Alignment explanation
Indices: 91036082--91036228 Score: 160
Period size: 44 Copynumber: 3.4 Consensus size: 44
91036072 TGATATATAT
91036082 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAG
* *
91036126 TTATGTAAATTATGATA--TA---AAATATATTTAAGTATTATGTAAG
1 TTATGTAAATTAT-ATATTTATCTAAGT-TATATAAG--TTATGTAAG
* * *
91036169 TTATGTAAGTTATATATTTGTCTAAGTTATATAAGTTATGTACG
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAG
* *
91036213 TTCTGTAAGTTATATA
1 TTATGTAAATTATATA
91036229 AATTATGATA
Statistics
Matches: 86, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
40 3 0.03
41 7 0.08
42 3 0.03
43 23 0.27
44 37 0.43
45 3 0.03
46 7 0.08
47 3 0.03
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (44 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAG
Found at i:91036184 original size:87 final size:90
Alignment explanation
Indices: 91036082--91036266 Score: 250
Period size: 96 Copynumber: 2.0 Consensus size: 90
91036072 TGATATATAT
*
91036082 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTACTGTAAGTTATATAAATTATGATAT
91036144 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
* *
91036169 TTATGTAAGTTATATATTTGTCTAAGTTATATAAGTTATGTACGTTCTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA----CTGTAAGTTATATAAATTA
* *
91036234 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
91036265 TT
1 TT
91036267 TTTTATTTCA
Statistics
Matches: 84, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
87 33 0.39
90 1 0.01
91 2 0.02
96 48 0.57
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTACTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:91036253 original size:114 final size:114
Alignment explanation
Indices: 91036022--91036235 Score: 254
Period size: 114 Copynumber: 1.9 Consensus size: 114
91036012 ACTAGTTATG
* * * *
91036022 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
* * * **
91036087 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATAGTTATCTAAGTTATATAAATTATGTAAGTCAAATAAAT
*
91036136 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATATTTG-TCTA-AGTTA
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATA--TGATATATAGTTA
* * * *
91036198 TATAAGTTATGTACGTTCTGTAAGTTATATAAATTATG
64 TATAAATTATATA-GTTATCTAAGTTATATAAATTATG
91036236 ATATCAAATA
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
113 17 0.20
114 67 0.78
115 2 0.02
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATAGTTATCTAAGTTATATAAATTATGTAAGTCAAATAAAT
Found at i:91036360 original size:15 final size:15
Alignment explanation
Indices: 91036340--91036395 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
91036330 AAGTAGCGGG
91036340 ATTAAATAATATTTA
1 ATTAAATAATATTTA
91036355 ATTAAATAATATTT-
1 ATTAAATAATATTTA
91036369 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
91036384 ATTAAGTAATAT
1 ATTAAATAATAT
91036396 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:91037413 original size:356 final size:358
Alignment explanation
Indices: 91036605--91037484 Score: 1710
Period size: 356 Copynumber: 2.5 Consensus size: 358
91036595 ATAAAACGGA
*
91036605 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACATCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
91036670 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
91036735 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
91036800 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
91036865 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
261 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
91036930 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
91036963 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
91037028 CTCGATATAAGGCAACCCGTCAAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
91037093 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
91037158 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGC-AAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
91037222 TAATAT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
261 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
91037286 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
91037319 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
91037384 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
* *
91037449 AAGGTCGGAGAGAAGGTCATCCATTGTTGTAATTTT
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTT
91037485 AATGGACAAG
Statistics
Matches: 517, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
356 254 0.49
357 29 0.06
358 234 0.45
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (358 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
Found at i:91037728 original size:15 final size:15
Alignment explanation
Indices: 91037708--91037736 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
91037698 AGAATTTTGA
91037708 AATAAAACGTACCTT
1 AATAAAACGTACCTT
91037723 AATAAAACGTACCT
1 AATAAAACGTACCT
91037737 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Done.