Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 292 of 433
Found at i:91038248 original size:183 final size:183
Alignment explanation
Indices: 91037940--91038305 Score: 705
Period size: 183 Copynumber: 2.0 Consensus size: 183
91037930 AGAACAGATC
91037940 TAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATC
1 TAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATC
91038005 AGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGC
66 AGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGC
*
91038070 AGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATATAGACACATG
131 AGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATATAGACACATG
*
91038123 TAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTATATC
1 TAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATC
91038188 AGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGC
66 AGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGC
*
91038253 AGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACACATG
131 AGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATATAGACACATG
91038306 GAACTATATC
Statistics
Matches: 180, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 180 1.00
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (183 bp):
TAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATC
AGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGC
AGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATATAGACACATG
Found at i:91040967 original size:26 final size:27
Alignment explanation
Indices: 91040938--91040995 Score: 93
Period size: 25 Copynumber: 2.2 Consensus size: 27
91040928 ACTAGGGTAA
91040938 AAATTTTAGGGGAGAAGAAGTT-GGGG
1 AAATTTTAGGGGAGAAGAAGTTGGGGG
*
91040964 AAA-TTTGGGGGAGAAGAAGTTGGGGG
1 AAATTTTAGGGGAGAAGAAGTTGGGGG
91040990 AAATTT
1 AAATTT
91040996 GGGGGAAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 17 0.59
26 10 0.34
27 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.41, T:0.24
Consensus pattern (27 bp):
AAATTTTAGGGGAGAAGAAGTTGGGGG
Found at i:91040976 original size:25 final size:26
Alignment explanation
Indices: 91040946--91041001 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
91040936 AAAAATTTTA
91040946 GGGGAGAAGAAGTT-GGGGAAATTTG
1 GGGGAGAAGAAGTTGGGGGAAATTTG
91040971 GGGGAGAAGAAGTTGGGGGAAATTTG
1 GGGGAGAAGAAGTTGGGGGAAATTTG
91040997 GGGGA
1 GGGGA
91041002 AATCGGGGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 14 0.47
26 16 0.53
ACGTcount: A:0.30, C:0.00, G:0.52, T:0.18
Consensus pattern (26 bp):
GGGGAGAAGAAGTTGGGGGAAATTTG
Found at i:91041314 original size:28 final size:28
Alignment explanation
Indices: 91041282--91041339 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
91041272 AATCAAAACT
*
91041282 CTAT-ACCTTAAACCATTAAACTATATCC
1 CTATAACCTTAAACC-CTAAACTATATCC
* *
91041310 CTATAACCTTAATCCCTAAAGTATATCC
1 CTATAACCTTAAACCCTAAACTATATCC
91041338 CT
1 CT
91041340 TAAACCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
CTATAACCTTAAACCCTAAACTATATCC
Found at i:91041340 original size:21 final size:21
Alignment explanation
Indices: 91041316--91041360 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
91041306 ATCCCTATAA
* *
91041316 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
91041337 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
91041358 CCT
1 CCT
91041361 AACCATAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.33, G:0.02, T:0.31
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:91041369 original size:19 final size:21
Alignment explanation
Indices: 91041316--91041370 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
91041306 ATCCCTATAA
* * *
91041316 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCATAAACTATATC
*
91041337 CCTTAAACCCTAAACTATATC
1 CCTTAAACCATAAACTATATC
91041358 CC-T-AACCATAAAC
1 CCTTAAACCATAAAC
91041371 CACAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 9 0.29
20 1 0.03
21 21 0.68
ACGTcount: A:0.38, C:0.33, G:0.02, T:0.27
Consensus pattern (21 bp):
CCTTAAACCATAAACTATATC
Found at i:91041618 original size:21 final size:21
Alignment explanation
Indices: 91041594--91041638 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
91041584 CCCTAACCCC
* *
91041594 TAAACCCTAACCCTTAAATCA
1 TAAACCCCAACCCTTAAACCA
91041615 TAAACCCCAACCCTTAAACCA
1 TAAACCCCAACCCTTAAACCA
91041636 TAA
1 TAA
91041639 TGCATAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (21 bp):
TAAACCCCAACCCTTAAACCA
Found at i:91041769 original size:41 final size:41
Alignment explanation
Indices: 91041712--91042041 Score: 411
Period size: 41 Copynumber: 8.1 Consensus size: 41
91041702 AACCCTAAAC
91041712 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTAT
* **
91041753 TTTTAGCGGCGTTTTACCAAAACCGCCGCTAATGCTCCGAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTAT
* * * *
91041794 TTTTAGCGGCGCTTTACCAAAAGCGCTGCTATTGCT-TCGAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-TAT
* * * * *
91041835 TTTTAGTGGCGTTTTACAAAAAGCGCCACTATTGCT-TCGAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-TAT
91041876 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTAT
*
91041917 TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTTAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTAT
* * *
91041958 TTTTAGCAGCGTTTTACCAAAAGCGCCGCTATTGCTC-T-G
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTAT
*** *
91041997 TTTTAGCGGCGTTTTGGTAAAA-CGCCGCTATTGCTC-TAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTAT
91042036 GTTTTA
1 -TTTTA
91042042 CAATTTTTTT
Statistics
Matches: 257, Mismatches: 28, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
38 15 0.06
39 18 0.07
40 6 0.02
41 217 0.84
42 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTAT
Found at i:91042925 original size:2 final size:2
Alignment explanation
Indices: 91042918--91042945 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
91042908 CTCCAATGCC
91042918 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91042946 GGGCTTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91051341 original size:38 final size:39
Alignment explanation
Indices: 91051203--91051384 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
91051193 TCGTTCAAAC
* * ** * **
91051203 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
91051243 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
91051283 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
91051322 GCCTTC-GGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
91051360 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
91051385 CTCGAACATT
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 37 0.30
39 49 0.40
40 38 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:91058456 original size:38 final size:38
Alignment explanation
Indices: 91058414--91058634 Score: 297
Period size: 38 Copynumber: 5.8 Consensus size: 38
91058404 GGCCTAAAGA
* *
91058414 CCCGCAGGCTAT-ATGCTGG-AATTATATCCGAGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGTAA-TATATCCGGGTTAAAT
91058452 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* *
91058490 CTCGCAGGCTTCGTACTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* *
91058528 CCCGAAGGCTTCGTGCT-GTAATATATCTGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
91058565 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* * * *
91058603 CCTGCAGG-TCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCT-TCGTGCTGGTAATATATCCGGG
91058635 CCTTCGTACC
Statistics
Matches: 165, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
37 37 0.22
38 126 0.76
39 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
Found at i:91058619 original size:75 final size:76
Alignment explanation
Indices: 91058414--91058634 Score: 297
Period size: 75 Copynumber: 2.9 Consensus size: 76
91058404 GGCCTAAAGA
* *
91058414 CCCGCAGGCTAT-ATGCTGG-AATTATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGTAATAT
1 CCCGCAGGCT-TCGTGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATAT
91058477 ATCCGGGTTAAAT
64 ATCCGGGTTAAAT
* * *
91058490 CTCGCAGGCTTCGTACTGGTAATATATCCGGGTTAAATCCCGAAGGCTTCGTGCT-GTAATATAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATAT
*
91058554 CTGGGTTAAAT
66 CCGGGTTAAAT
* * *
91058565 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCTGCAGG-TCTAGTGCTGGTATTATA
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGTAATATA
*
91058629 TTCGGG
65 TCCGGG
91058635 CCTTCGTACC
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
74 1 0.01
75 68 0.54
76 56 0.44
77 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (76 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATAT
CCGGGTTAAAT
Found at i:91058675 original size:43 final size:43
Alignment explanation
Indices: 91058627--91058866 Score: 396
Period size: 43 Copynumber: 5.6 Consensus size: 43
91058617 GCTGGTATTA
*
91058627 TATTCGGGCCTTCGTACCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
91058670 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
91058713 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTG-CTAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
* *
91058756 TATTCGGGCC-TAGTGCCTAGTAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
91058798 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGGC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
91058841 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
91058867 GTAATGCCGG
Statistics
Matches: 185, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
42 39 0.21
43 146 0.79
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
Found at i:91058790 original size:128 final size:129
Alignment explanation
Indices: 91058627--91058866 Score: 421
Period size: 128 Copynumber: 1.9 Consensus size: 129
91058617 GCTGGTATTA
*
91058627 TATTCGGGCCTTCGTACCTAGCAGGCTTCGTGCCGATGATGTGTATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTAGTACCTAGCAGGCTTCGTGCCGATGATGTGTATTCGGGCCTTCGTGCCTAGC
91058692 AGGCTTCGTGCC-GATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTAGTGATGTG
66 AGGCTTCGTGCCAG-TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTAGTGATGTG
* *
91058756 TATTCGGGCC-TAGTGCCTAGTAGGCTTCGTGCCGATGATGTGTATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTAGTACCTAGCAGGCTTCGTGCCGATGATGTGTATTCGGGCCTTCGTGCCTAGC
*
91058820 AGGCTTCGTGGCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
66 AGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
91058867 GTAATGCCGG
Statistics
Matches: 106, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
128 95 0.90
129 11 0.10
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.30
Consensus pattern (129 bp):
TATTCGGGCCTTAGTACCTAGCAGGCTTCGTGCCGATGATGTGTATTCGGGCCTTCGTGCCTAGC
AGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTAGTGATGTG
Found at i:91058813 original size:85 final size:85
Alignment explanation
Indices: 91058627--91058866 Score: 410
Period size: 85 Copynumber: 2.8 Consensus size: 85
91058617 GCTGGTATTA
* *
91058627 TATTCGGGCCTTCGTACCTAGCAGGCTTCGTGCCGATGATGTGTATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCAG-TGATGTGTATTCGGGCCTTCGTGCCTAGC
91058692 AGGCTTCGTGCCGATGATGTG
65 AGGCTTCGTGCCGATGATGTG
* *
91058713 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTAGTGATGTGTATTCGGGCC-TAGTGCCTAGT
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC-AGTGATGTGTATTCGGGCCTTCGTGCCTAGC
91058777 AGGCTTCGTGCCGATGATGTG
65 AGGCTTCGTGCCGATGATGTG
91058798 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGGCAGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGT-GCAGTGATGTGTATTCGGGCCTTCGTGCCTAGC
91058863 AGGC
65 AGGC
91058867 GTAATGCCGG
Statistics
Matches: 145, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
85 80 0.55
86 64 0.44
87 1 0.01
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.30
Consensus pattern (85 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
GGCTTCGTGCCGATGATGTG
Found at i:91059276 original size:43 final size:46
Alignment explanation
Indices: 91059193--91059277 Score: 122
Period size: 44 Copynumber: 1.9 Consensus size: 46
91059183 CTTGTTGATT
* *
91059193 TGATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTAAAA
1 TGATTATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGTAAAA
*
91059239 TGATTA-TCGGGCC-TCGAGCCTAGTAGGCGA-AATGCCGGT
1 TGATTATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGT
91059278 GATTTGAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 9 0.25
44 14 0.39
45 7 0.19
46 6 0.17
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (46 bp):
TGATTATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGTAAAA
Found at i:91060541 original size:48 final size:48
Alignment explanation
Indices: 91060447--91060550 Score: 129
Period size: 48 Copynumber: 2.2 Consensus size: 48
91060437 TATGCTAAGC
* * * *
91060447 GTAAGACCTATCGGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCGGGAATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
**
91060495 GTAAGACCTATCGGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGT
1 GTAAGACCTATCGGGAATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT
*
91060543 ATAAGACC
1 GTAAGACC
91060551 ATAATTGGAC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
47 5 0.10
48 43 0.90
ACGTcount: A:0.30, C:0.22, G:0.32, T:0.16
Consensus pattern (48 bp):
GTAAGACCTATCGGGAATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
Found at i:91062418 original size:44 final size:44
Alignment explanation
Indices: 91062368--91062455 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
91062358 GTGATTTTGG
91062368 AAAATCACCATAAATTATGGGAGATGATTTAGAAGTATAATAAA
1 AAAATCACCATAAATTATGGGAGATGATTTAGAAGTATAATAAA
*
91062412 AAAATCACCATAAATTGTGGGAGATGATTTAGAAGTATAATAAA
1 AAAATCACCATAAATTATGGGAGATGATTTAGAAGTATAATAAA
91062456 TTATTTAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (44 bp):
AAAATCACCATAAATTATGGGAGATGATTTAGAAGTATAATAAA
Found at i:91064161 original size:38 final size:38
Alignment explanation
Indices: 91064119--91064325 Score: 312
Period size: 38 Copynumber: 5.5 Consensus size: 38
91064109 GCCGGCTATA
91064119 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCG
*
91064157 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGTTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* *
91064195 TACTGGTAATATATCCGGGTTAAATCCCACAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
*
91064233 TGCT-ATAATATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* *
91064270 TGCTGGTAATATATCCGGGTTAAATCCCGCA-GCCTAG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* *
91064307 TGCTGGTATTATATTCGGG
1 TGCTGGTAATATATCCGGG
91064326 CCTTCGTGCC
Statistics
Matches: 155, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
37 56 0.36
38 97 0.63
39 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (38 bp):
TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:91064320 original size:75 final size:76
Alignment explanation
Indices: 91064119--91064325 Score: 312
Period size: 75 Copynumber: 2.8 Consensus size: 76
91064109 GCCGGCTATA
91064119 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATC
1 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATC
*
91064183 CCGCAGGTTTCG
65 CCGCAGGCTTCG
* * *
91064195 TACTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCT-ATAATATATCCGGGTTAAATCC
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCC
91064259 CGCAGGCTTCG
66 CGCAGGCTTCG
* * * *
91064270 TGCTGGTAATATATCCGGGTTAAATCCCGCA-GCCTAGTGCTGGTATTATATTCGGG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGG
91064326 CCTTCGTGCC
Statistics
Matches: 118, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
74 8 0.07
75 71 0.60
76 37 0.31
77 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (76 bp):
TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCC
CGCAGGCTTCG
Found at i:91064379 original size:43 final size:43
Alignment explanation
Indices: 91064318--91064513 Score: 335
Period size: 43 Copynumber: 4.6 Consensus size: 43
91064308 GCTGGTATTA
*
91064318 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATCTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
91064361 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
91064404 TATT-GGGCCTTCGTGCCTAGCAGGC-TCGTGTCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
91064445 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
91064488 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
91064514 GTAATGCCGG
Statistics
Matches: 145, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
41 19 0.13
42 42 0.29
43 84 0.58
ACGTcount: A:0.12, C:0.26, G:0.32, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
Found at i:91064465 original size:84 final size:86
Alignment explanation
Indices: 91064318--91064513 Score: 335
Period size: 84 Copynumber: 2.3 Consensus size: 86
91064308 GCTGGTATTA
*
91064318 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATCTGTATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATCTGTATTCAGGCCTTCGTGCCTAGC
91064383 AGGCTTCGTGCC-GATGATGTG
66 AGGCTTCGTGCCAG-TGATGTG
* *
91064404 TATT-GGGCCTTCGTGCCTAGCAGGC-TCGTGTCGATGATGTGTATTCAGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATCTGTATTCAGGCCTTCGTGCCTAGC
91064467 AGGCTTCGTGCCAGTGATGTG
66 AGGCTTCGTGCCAGTGATGTG
91064488 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
91064514 GTAATGCCGG
Statistics
Matches: 105, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
84 58 0.55
85 43 0.41
86 4 0.04
ACGTcount: A:0.12, C:0.26, G:0.32, T:0.30
Consensus pattern (86 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATCTGTATTCAGGCCTTCGTGCCTAGC
AGGCTTCGTGCCAGTGATGTG
Found at i:91079928 original size:38 final size:37
Alignment explanation
Indices: 91079883--91080014 Score: 149
Period size: 38 Copynumber: 3.5 Consensus size: 37
91079873 GGCCTAAAGA
*
91079883 CCCGCAGGCTAT-ATGCTGGAATTATATCCAGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGAA-TATATCCAGGTTAAAT
* *
91079921 CCTGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGG-AATATATCCAGGTTAAAT
* ** *
91079959 CCCGTAGGCTTCGTGCTATAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGAATATATCCAGGTTAAAT
* *
91079996 CCCGCAGGCCTAGTGCTGG
1 CCCGCAGGCTTCGTGCTGG
91080015 TATTATATTC
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
37 33 0.41
38 45 0.56
39 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (37 bp):
CCCGCAGGCTTCGTGCTGGAATATATCCAGGTTAAAT
Found at i:91079990 original size:37 final size:38
Alignment explanation
Indices: 91079905--91080022 Score: 157
Period size: 38 Copynumber: 3.1 Consensus size: 38
91079895 ATGCTGGAAT
* * *
91079905 TATATCCAGGTTAAATCCTGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAA
*
91079943 TATATCCGGGTTAAATCCCGTAGGCTTCGTGCT-ATAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAA
* * * *
91079980 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAA
91080018 TATAT
1 TATAT
91080023 TCAGGCCTTC
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
37 33 0.47
38 37 0.53
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAA
Found at i:91080073 original size:43 final size:43
Alignment explanation
Indices: 91080020--91080303 Score: 437
Period size: 43 Copynumber: 6.6 Consensus size: 43
91080010 GCTGGTATTA
*
91080020 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
91080063 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
91080106 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
91080149 TATTCGGGCTTTCGTGCCTAGCAGGCTTCGTGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
* * * *
91080192 TATTTGGACCTTCATGCCTAGCAGGTTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
* *
91080235 TATTTGGACCTTCGTGCCTAGCAGGCTTCGTGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
*
91080278 TATTCAGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
91080304 GTAATACCGG
Statistics
Matches: 222, Mismatches: 16, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
42 2 0.01
43 219 0.99
44 1 0.00
ACGTcount: A:0.14, C:0.25, G:0.30, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
Found at i:91095060 original size:45 final size:46
Alignment explanation
Indices: 91094953--91095067 Score: 137
Period size: 46 Copynumber: 2.6 Consensus size: 46
91094943 TTGAAAACTA
* * * *
91094953 CAAATCTGATCTTCACTGAG-AGGAGTGGAGCAGATCAAATTTTGG
1 CAAATCTCATCTCCACTGAGCAGGAGCGGAGCAGATCAAATTTTAG
* * * *
91094998 TAGATCTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTAG
1 CAAATCTCATCTCCACTGAGCAGGAGCGGAGCAGATCAAATTTTAG
91095044 CAAATCTCATC-CCACTG-GCAGGAG
1 CAAATCTCATCTCCACTGAGCAGGAG
91095068 TGAAACAGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
44 7 0.12
45 22 0.37
46 31 0.52
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (46 bp):
CAAATCTCATCTCCACTGAGCAGGAGCGGAGCAGATCAAATTTTAG
Found at i:91095330 original size:48 final size:48
Alignment explanation
Indices: 91095275--91095423 Score: 155
Period size: 48 Copynumber: 3.1 Consensus size: 48
91095265 AAATCCTATT
91095275 TCCCTAAGCAGCAGTGGAACAGATCGAAGATGATGAGCAGGCTTTAAC
1 TCCCTAAGCAGCAGTGGAACAGATCGAAGATGATGAGCAGGCTTTAAC
* * * * * * * *
91095323 TCCCTAAGCAGTAG-GGTAAAAG-GCTG--GAGGATTA-CAAGATCTTATC
1 TCCCTAAGCAGCAGTGG-AACAGATC-GAAGATGATGAGCAGGCT-TTAAC
*
91095369 TCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAAC
1 TCCCTAAGCAGCAGTGGAACAGATCGAAGATGATGAGCAGGCTTTAAC
91095417 TCCCTAA
1 TCCCTAA
91095424 ACAGTAGGGT
Statistics
Matches: 76, Mismatches: 17, Indels: 16
0.70 0.16 0.15
Matches are distributed among these distances:
45 4 0.05
46 27 0.36
47 6 0.08
48 35 0.46
49 4 0.05
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (48 bp):
TCCCTAAGCAGCAGTGGAACAGATCGAAGATGATGAGCAGGCTTTAAC
Found at i:91095378 original size:46 final size:46
Alignment explanation
Indices: 91095322--91095476 Score: 136
Period size: 46 Copynumber: 3.3 Consensus size: 46
91095312 CAGGCTTTAA
91095322 CTCCCTAAGCAGTAGGGTAAAAGGCTGGAGGATTACAAGATCTTAT
1 CTCCCTAAGCAGTAGGGTAAAAGGCTGGAGGATTACAAGATCTTAT
* ** * * * * * *
91095368 CTCCCTAAGCAGCAGTGG-AGCA-GATCGAAGATGATGAGCAGGCT-TTAA
1 CTCCCTAAGCAGTAG-GGTAAAAGGCT-G--GAGGATTA-CAAGATCTTAT
* * *
91095416 CTCCCTAAACAGTAGGGTAAAAGGCCGGAGGATTATAAGATCTTAT
1 CTCCCTAAGCAGTAGGGTAAAAGGCTGGAGGATTACAAGATCTTAT
91095462 CTCCCTAAGCAGTAG
1 CTCCCTAAGCAGTAG
91095477 TGGAGCAGAT
Statistics
Matches: 79, Mismatches: 22, Indels: 16
0.68 0.19 0.14
Matches are distributed among these distances:
45 5 0.06
46 40 0.51
47 4 0.05
48 25 0.32
49 5 0.06
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (46 bp):
CTCCCTAAGCAGTAGGGTAAAAGGCTGGAGGATTACAAGATCTTAT
Found at i:91095392 original size:94 final size:94
Alignment explanation
Indices: 91095138--91095494 Score: 428
Period size: 94 Copynumber: 3.9 Consensus size: 94
91095128 ACGATGAGCC
* * * * **
91095138 TTAACCCCCTAAGCAGTAGGGTAATAGGC-GAGAAAATGAC-AGATCTTTATCTCCCTAAGCAAT
1 TTAACTCCCTAAGCAGTAGGGTAAAAGGCTG-GAGAATTACAAGATC-TTATCTCCCTAAGCAGC
* * *
91095201 AGTGGAGCAGATCAAAGATG--GTG-AGTC-
64 AGTGGAGCAGATCGAAGATGATGAGCAGGCT
** * * * *
91095228 TTAAC-CCCTAAGCAGTAGGGTAACTGACT-GA-AAATACAA-ATCCTATTTCCCTAAGCAGCAG
1 TTAACTCCCTAAGCAGTAGGGTAAAAGGCTGGAGAATTACAAGATCTTATCTCCCTAAGCAGCAG
*
91095289 TGGAACAGATCGAAGATGATGAGCAGGCT
66 TGGAGCAGATCGAAGATGATGAGCAGGCT
*
91095318 TTAACTCCCTAAGCAGTAGGGTAAAAGGCTGGAGGATTACAAGATCTTATCTCCCTAAGCAGCAG
1 TTAACTCCCTAAGCAGTAGGGTAAAAGGCTGGAGAATTACAAGATCTTATCTCCCTAAGCAGCAG
91095383 TGGAGCAGATCGAAGATGATGAGCAGGCT
66 TGGAGCAGATCGAAGATGATGAGCAGGCT
* * * * *
91095412 TTAACTCCCTAAACAGTAGGGTAAAAGGCCGGAGGATTATAAGATCTTATCTCCCTAAGCAGTAG
1 TTAACTCCCTAAGCAGTAGGGTAAAAGGCTGGAGAATTACAAGATCTTATCTCCCTAAGCAGCAG
91095477 TGGAGCAGATCGAAGATG
66 TGGAGCAGATCGAAGATG
91095495 GAAAACCTTA
Statistics
Matches: 232, Mismatches: 25, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
86 31 0.13
87 7 0.03
88 5 0.02
89 23 0.10
90 10 0.04
91 21 0.09
92 2 0.01
93 6 0.03
94 127 0.55
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (94 bp):
TTAACTCCCTAAGCAGTAGGGTAAAAGGCTGGAGAATTACAAGATCTTATCTCCCTAAGCAGCAG
TGGAGCAGATCGAAGATGATGAGCAGGCT
Found at i:91095634 original size:45 final size:44
Alignment explanation
Indices: 91095584--91095707 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
91095574 TTGAAGATAA
*
91095584 CAGATCGTATCTCCCTAAGCAGTAGTGGAGCAGATTGAATTTTAC
1 CAGATC-TATCTCCCTAAGCAGTAGTGGAGCAGATTAAATTTTAC
* * * **
91095629 CAGATCTCATC-CCGCT-GGCAGGAGTGGAACAGATTAAATTTTGG
1 CAGATCT-ATCTCC-CTAAGCAGTAGTGGAGCAGATTAAATTTTAC
91095673 CAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 CAGAT-CTATCTCCCTAAGCAGTAGTGGAGCAGAT
91095708 CGAAGATGAT
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
44 35 0.54
45 30 0.46
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (44 bp):
CAGATCTATCTCCCTAAGCAGTAGTGGAGCAGATTAAATTTTAC
Found at i:91095915 original size:48 final size:48
Alignment explanation
Indices: 91095860--91096012 Score: 154
Period size: 48 Copynumber: 3.2 Consensus size: 48
91095850 AGATCTTATT
91095860 TCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAAC
1 TCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAAC
* ** * * * * * *
91095908 TCCCTAAGCAGTAG-GGTAAAAG-GCTG--GAGGATTA-CAAGATCTTATC
1 TCCCTAAGCAGCAGTGG-AGCAGATC-GAAGATGATGAGCAGGCT-TTAAC
*
91095954 TCGCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAAC
1 TCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAAC
91096002 TCCCTAAGCAG
1 TCCCTAAGCAG
91096013 TAGGGTAAAT
Statistics
Matches: 77, Mismatches: 20, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
45 4 0.05
46 26 0.34
47 6 0.08
48 37 0.48
49 4 0.05
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (48 bp):
TCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAAC
Found at i:91095972 original size:180 final size:182
Alignment explanation
Indices: 91095673--91096079 Score: 524
Period size: 180 Copynumber: 2.2 Consensus size: 182
91095663 TAAATTTTGG
*
91095673 CAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGCCTTAACCCCCTAAGCA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGCCTTAACCCCCTAAGCA
* *
91095738 GTAGGGTAATAGGCGAGAAAATGACAGATCTTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAG
66 GTAGGGTAAAAGGCGAGAAAATGACAGATCTTTATCTCCCTAAGCAACAGTGGAGCAGATCAAAG
* * *
91095803 ATG-GTG-AGTC-TTAAC-CCCTAAGCAGTAGGGTAACTGACT-GA-AAATA
131 ATGAGAGCAGGCTTTAACTCCCTAAGCAGTAGGGTAAATGACTGGAGAAATA
* * *
91095849 CAGATCTTATTTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAACTCCCTA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGC---C-TTAACCCCCTA
** * * *
91095914 AGCAGTAGGGTAAAAGGCTG-GAGGATTACAAGATC-TTATCTCGCTAAGCAGCAGTGGAGCAGA
62 AGCAGTAGGGTAAAAGGC-GAGAAAATGAC-AGATCTTTATCTCCCTAAGCAACAGTGGAGCAGA
* * * *
91095977 TCGAAGATGATGAGCAGGCTTTAACTCCCTAAGCAGTAGGGTAAATGGCTGGAGGATTA
125 TCAAAGATGA-GAGCAGGCTTTAACTCCCTAAGCAGTAGGGTAAATGACTGGAGAAATA
91096036 CAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATG
1 C-AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATG
91096080 GAAAACCTTA
Statistics
Matches: 197, Mismatches: 20, Indels: 16
0.85 0.09 0.07
Matches are distributed among these distances:
176 46 0.23
179 1 0.01
180 66 0.34
181 6 0.03
182 2 0.01
183 3 0.02
184 5 0.03
185 22 0.11
186 2 0.01
187 4 0.02
188 40 0.20
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.22
Consensus pattern (182 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGCCTTAACCCCCTAAGCA
GTAGGGTAAAAGGCGAGAAAATGACAGATCTTTATCTCCCTAAGCAACAGTGGAGCAGATCAAAG
ATGAGAGCAGGCTTTAACTCCCTAAGCAGTAGGGTAAATGACTGGAGAAATA
Found at i:91095976 original size:94 final size:92
Alignment explanation
Indices: 91095673--91096079 Score: 510
Period size: 94 Copynumber: 4.5 Consensus size: 92
91095663 TAAATTTTGG
* *
91095673 CAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGC---CTTAACCCCCTAA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGCAGGCTTAACTCCCTAA
* * *
91095735 GCAGTAGGGTAATAGGC-GAGAAAATGA
66 GCAGTAGGGTAAAAGGCTG-GAGAATTA
* * * *
91095762 CAGATCTTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATG--GTG-AGTCTTAAC-CCCTA
1 CAGATC-TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGCAGGCTTAACTCCCTA
** * *
91095823 AGCAGTAGGGTAACTGACT-GA-AAATA
65 AGCAGTAGGGTAAAAGGCTGGAGAATTA
* *
91095849 CAGATCTTATTTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAACTCCCTA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGCAGGC-TTAACTCCCTA
*
91095914 AGCAGTAGGGTAAAAGGCTGGAGGATTA
65 AGCAGTAGGGTAAAAGGCTGGAGAATTA
* *
91095942 CAAGATCTTATCTCGCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAACTCCCT
1 C-AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGCAGGC-TTAACTCCCT
* *
91096007 AAGCAGTAGGGTAAATGGCTGGAGGATTA
64 AAGCAGTAGGGTAAAAGGCTGGAGAATTA
91096036 CAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATG
1 C-AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATG
91096080 GAAAACCTTA
Statistics
Matches: 280, Mismatches: 25, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
86 33 0.12
87 9 0.03
88 6 0.02
89 29 0.10
90 45 0.16
91 21 0.08
92 2 0.01
93 4 0.01
94 131 0.47
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.22
Consensus pattern (92 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGCAGGCTTAACTCCCTAA
GCAGTAGGGTAAAAGGCTGGAGAATTA
Found at i:91096053 original size:46 final size:46
Alignment explanation
Indices: 91095907--91096061 Score: 145
Period size: 46 Copynumber: 3.3 Consensus size: 46
91095897 CAGGCTTTAA
*
91095907 CTCCCTAAGCAGTAGGGTAAAAGGCTGGAGGATTACAAGATCTTAT
1 CTCCCTAAGCAGTAGGGTAAATGGCTGGAGGATTACAAGATCTTAT
* * * ** * * * * *
91095953 CTCGCTAAGCAGCAGTGG-AGCAGATCG-AAGATGATGAGCAGGCT-TTAA
1 CTCCCTAAGCAGTAG-GGTA--A-ATGGCTGGAGGATTA-CAAGATCTTAT
91096001 CTCCCTAAGCAGTAGGGTAAATGGCTGGAGGATTACAAGATCTTAT
1 CTCCCTAAGCAGTAGGGTAAATGGCTGGAGGATTACAAGATCTTAT
91096047 CTCCCTAAGCAGTAG
1 CTCCCTAAGCAGTAG
91096062 TGGAGCAGAT
Statistics
Matches: 80, Mismatches: 21, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
45 7 0.09
46 39 0.49
47 4 0.05
48 24 0.30
49 6 0.08
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (46 bp):
CTCCCTAAGCAGTAGGGTAAATGGCTGGAGGATTACAAGATCTTAT
Found at i:91096135 original size:585 final size:585
Alignment explanation
Indices: 91095016--91096180 Score: 2053
Period size: 585 Copynumber: 2.0 Consensus size: 585
91095006 ATCTTCACTG
*
91095016 AGCAGGAGCGGAGCAGATCAAATTTTAGCAAATCTCATCCCACTGGCAGGAGTGAAACAGATTAA
1 AGCAGGAGCGGAGCAGATCAAATTTTACCAAATCTCATCCCACTGGCAGGAGTGAAACAGATTAA
* * *
91095081 ATTTCGGCAGATCCTATCTCCCAAAGTAGTAGTGTAGCAGATTAAAGACGATGAGCCTTAACCCC
66 ATTTCGGCAGATCCTATCTCCCAAAGCAGTAGTGGAGCAGATCAAAGACGATGAGCCTTAACCCC
91095146 CTAAGCAGTAGGGTAATAGGCGAGAAAATGACAGATCTTTATCTCCCTAAGCAATAGTGGAGCAG
131 CTAAGCAGTAGGGTAATAGGCGAGAAAATGACAGATCTTTATCTCCCTAAGCAATAGTGGAGCAG
91095211 ATCAAAGATGGTGAGTCTTAACCCCTAAGCAGTAGGGTAACTGACTGAAAATACAAATCCTATTT
196 ATCAAAGATGGTGAGTCTTAACCCCTAAGCAGTAGGGTAACTGACTGAAAATACAAATCCTATTT
91095276 CCCTAAGCAGCAGTGGAACAGATCGAAGATGATGAGCAGGCTTTAACTCCCTAAGCAGTAGGGTA
261 CCCTAAGCAGCAGTGGAACAGATCGAAGATGATGAGCAGGCTTTAACTCCCTAAGCAGTAGGGTA
91095341 AAAGGCTGGAGGATTACAAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAG
326 AAAGGCTGGAGGATTACAAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAG
*
91095406 CAGGCTTTAACTCCCTAAACAGTAGGGTAAAAGGCCGGAGGATTATAAGATCTTATCTCCCTAAG
391 CAGGCTTTAACTCCCTAAACAGTAGGGTAAAAGGCCGGAGGATTACAAGATCTTATCTCCCTAAG
91095471 CAGTAGTGGAGCAGATCGAAGATGGAAAACCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTAAAG
456 CAGTAGTGGAGCAGATCGAAGATGGAAAACCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTAAAG
* *
91095536 TTACAAGTCTTATC-TCTCTGAATCCGTAGCGGAGCATATTGAAGATAACAGATCGTATCTCCCT
521 TTACAAGTCTTATCTTC-CTGAAGCCGTAGCAGAGCATATTGAAGATAACAGATCGTATCTCCCT
91095600 A
585 A
* * ** * * *
91095601 AGCAGTAGTGGAGCAGATTGAATTTTACCAGATCTCATCCCGCTGGCAGGAGTGGAACAGATTAA
1 AGCAGGAGCGGAGCAGATCAAATTTTACCAAATCTCATCCCACTGGCAGGAGTGAAACAGATTAA
* * * *
91095666 ATTTTGGCAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAGCCTTAACCCC
66 ATTTCGGCAGATCCTATCTCCCAAAGCAGTAGTGGAGCAGATCAAAGACGATGAGCCTTAACCCC
91095731 CTAAGCAGTAGGGTAATAGGCGAGAAAATGACAGATCTTTATCTCCCTAAGCAATAGTGGAGCAG
131 CTAAGCAGTAGGGTAATAGGCGAGAAAATGACAGATCTTTATCTCCCTAAGCAATAGTGGAGCAG
* *
91095796 ATCAAAGATGGTGAGTCTTAACCCCTAAGCAGTAGGGTAACTGACTGAAAATACAGATCTTATTT
196 ATCAAAGATGGTGAGTCTTAACCCCTAAGCAGTAGGGTAACTGACTGAAAATACAAATCCTATTT
*
91095861 CCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAACTCCCTAAGCAGTAGGGTA
261 CCCTAAGCAGCAGTGGAACAGATCGAAGATGATGAGCAGGCTTTAACTCCCTAAGCAGTAGGGTA
*
91095926 AAAGGCTGGAGGATTACAAGATCTTATCTCGCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAG
326 AAAGGCTGGAGGATTACAAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAG
* * *
91095991 CAGGCTTTAACTCCCTAAGCAGTAGGGTAAATGGCTGGAGGATTACAAGATCTTATCTCCCTAAG
391 CAGGCTTTAACTCCCTAAACAGTAGGGTAAAAGGCCGGAGGATTACAAGATCTTATCTCCCTAAG
*
91096056 CAGTAGTGGAGCAGATCGAAGATGGAAAACCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTGAAG
456 CAGTAGTGGAGCAGATCGAAGATGGAAAACCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTAAAG
* * *
91096121 TTACAAGTCTTATCTTCCTGAAGCCGTAGCAGAGTATATTGAAGATAATAGATCTTATCT
521 TTACAAGTCTTATCTTCCTGAAGCCGTAGCAGAGCATATTGAAGATAACAGATCGTATCT
91096181 ATAACACCTC
Statistics
Matches: 550, Mismatches: 29, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
585 548 1.00
586 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.24
Consensus pattern (585 bp):
AGCAGGAGCGGAGCAGATCAAATTTTACCAAATCTCATCCCACTGGCAGGAGTGAAACAGATTAA
ATTTCGGCAGATCCTATCTCCCAAAGCAGTAGTGGAGCAGATCAAAGACGATGAGCCTTAACCCC
CTAAGCAGTAGGGTAATAGGCGAGAAAATGACAGATCTTTATCTCCCTAAGCAATAGTGGAGCAG
ATCAAAGATGGTGAGTCTTAACCCCTAAGCAGTAGGGTAACTGACTGAAAATACAAATCCTATTT
CCCTAAGCAGCAGTGGAACAGATCGAAGATGATGAGCAGGCTTTAACTCCCTAAGCAGTAGGGTA
AAAGGCTGGAGGATTACAAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAG
CAGGCTTTAACTCCCTAAACAGTAGGGTAAAAGGCCGGAGGATTACAAGATCTTATCTCCCTAAG
CAGTAGTGGAGCAGATCGAAGATGGAAAACCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTAAAG
TTACAAGTCTTATCTTCCTGAAGCCGTAGCAGAGCATATTGAAGATAACAGATCGTATCTCCCTA
Found at i:91097608 original size:40 final size:40
Alignment explanation
Indices: 91097564--91097751 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
91097554 GCTACTTGCT
91097564 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
91097604 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
91097644 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
91097684 CAAATGCCTTCAGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
91097723 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
91097752 CATCCGAATA
Statistics
Matches: 138, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 103 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:91105555 original size:40 final size:40
Alignment explanation
Indices: 91105511--91105736 Score: 379
Period size: 40 Copynumber: 5.7 Consensus size: 40
91105501 GCTACTTGCT
91105511 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
91105551 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
91105591 CAAATGCCTTCGGGACTTAGCCCGG-T-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
91105629 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
91105669 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
91105708 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
91105737 CATCCGAATA
Statistics
Matches: 177, Mismatches: 4, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
38 38 0.21
39 36 0.20
40 102 0.58
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:91105649 original size:78 final size:79
Alignment explanation
Indices: 91105511--91105736 Score: 384
Period size: 78 Copynumber: 2.9 Consensus size: 79
91105501 GCTACTTGCT
*
91105511 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
91105576 TTATAGTAACTCGCA
65 TTATAGTAACTCGCA
*
91105591 CAAATGCCTTCGGGACTTAGCCCGG-TTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
91105655 TATAGTAACTCGCA
66 TATAGTAACTCGCA
* *
91105669 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
91105733 TTAT
65 TTAT
91105737 CATCCGAATA
Statistics
Matches: 140, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
77 10 0.07
78 65 0.46
79 40 0.29
80 25 0.18
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
TATAGTAACTCGCA
Found at i:91114019 original size:40 final size:40
Alignment explanation
Indices: 91113940--91114093 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
91113930 CTATGTCCCG
* * *
91113940 CCGAAGGCTTTTGTGCTAAGTGACTAAAACCGGGTTAAGTC
1 CCGAAGGCATTTGTGC-GAGTTACTAAAACCGGGTTAAGTC
* *
91113981 CCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTT
1 CCGAAGGCATTTGTGCGAGTTACTAAAACCGGGTTAAGTC
* * * * *
91114021 CCGAAGGTATTCGTGCGAGTTACTAAATCCGGGCTAATTC
1 CCGAAGGCATTTGTGCGAGTTACTAAAACCGGGTTAAGTC
* * * * *
91114061 CCGAAGGCAATTGTGTGAATCACTATAACCGGG
1 CCGAAGGCATTTGTGCGAGTTACTAAAACCGGG
91114094 CAATGTCCCA
Statistics
Matches: 93, Mismatches: 20, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
40 78 0.84
41 15 0.16
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAAACCGGGTTAAGTC
Found at i:91114094 original size:40 final size:40
Alignment explanation
Indices: 91113962--91114111 Score: 135
Period size: 40 Copynumber: 3.8 Consensus size: 40
91113952 GTGCTAAGTG
* * *
91113962 ACTAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTT
1 ACTAAAACCGGGCTAATTCCCGAAGGCAATTGTGCGAGTT
* * *
91114002 ACCAAAACCGGGTTAAGTT-CCGAAGG-TATTCGTGCGAGTT
1 ACTAAAACCGGGCTAA-TTCCCGAAGGCAATT-GTGCGAGTT
* * * *
91114042 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGTGAATC
1 ACTAAAACCGGGCTAATTCCCGAAGGCAATTGTGCGAGTT
* * *
91114082 ACTATAACCGGGC-AATGTCCCAAAGACAAT
1 ACTAAAACCGGGCTAAT-TCCCGAAGGCAAT
91114112 CGAGCTAGTC
Statistics
Matches: 90, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
39 7 0.08
40 79 0.88
41 4 0.04
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTAAAACCGGGCTAATTCCCGAAGGCAATTGTGCGAGTT
Found at i:91119955 original size:46 final size:49
Alignment explanation
Indices: 91119849--91119970 Score: 142
Period size: 50 Copynumber: 2.5 Consensus size: 49
91119839 TGTCTTCGAC
** * *
91119849 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATATAAT
* * *
91119899 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATATAAT
*
91119945 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
91119971 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 5 0.08
50 30 0.48
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATATAAT
Found at i:91127795 original size:48 final size:48
Alignment explanation
Indices: 91127717--91127840 Score: 149
Period size: 48 Copynumber: 2.6 Consensus size: 48
91127707 CACCACGATT
* * * * * *
91127717 TATGAGATCCCGTGTAAAACCAAGTCTGGGACATGGCATCAGCGTTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGCCATCAGCATTGA
* *
91127765 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGCCATCGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGCCATCAGCATTGA
* * *
91127813 TATGTGCGCCAGTGTAAGACCATATCTG
1 TATGAGAGCCAGTGTAAGACCATGTCTG
91127841 AGATATGGCA
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGCCATCAGCATTGA
Found at i:91127853 original size:48 final size:48
Alignment explanation
Indices: 91127717--91127855 Score: 145
Period size: 48 Copynumber: 2.9 Consensus size: 48
91127707 CACCACGATT
* * * * * *
91127717 TATGAGATCCCGTGTAAAACCA-AGTCTGGGACATGGCATCAGCGTTGA
1 TATGAGAGCCAGTGTAAGACCATA-TCTGAGACATGGCATCGGCATTGA
* * * *
91127765 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGCCATCGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATATCTGAGACATGGCATCGGCATTGA
* * *
91127813 TATGTGCGCCAGTGTAAGACCATATCTGAGATATGGCATCGGC
1 TATGAGAGCCAGTGTAAGACCATATCTGAGACATGGCATCGGC
91127856 CTCGGCATGT
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATATCTGAGACATGGCATCGGCATTGA
Found at i:91127866 original size:48 final size:49
Alignment explanation
Indices: 91127728--91127897 Score: 132
Period size: 48 Copynumber: 3.5 Consensus size: 49
91127718 ATGAGATCCC
* * * * * * *
91127728 GTGTAAAACCA-AGTCTGGGACATGGCATCAGCGTTGATATGAGA-GCCA
1 GTGTAAGACCATA-TCTGGGATATGGCATCGGCATCGACATGTGACGCCA
* * * * * *
91127776 GTGTAAGACCATGTTTGGGACATGCCATCGGCATTGATATGTG-CGCCA
1 GTGTAAGACCATATCTGGGATATGGCATCGGCATCGACATGTGACGCCA
* * * ***
91127824 GTGTAAGACCATATCTGAGATATGGCATCGGCCTCGGCATGTGATTTCA
1 GTGTAAGACCATATCTGGGATATGGCATCGGCATCGACATGTGACGCCA
91127873 -TGTAAGACCATATCTGGGATATGGC
1 GTGTAAGACCATATCTGGGATATGGC
91127898 GTTGTATGAG
Statistics
Matches: 99, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
48 97 0.98
49 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (49 bp):
GTGTAAGACCATATCTGGGATATGGCATCGGCATCGACATGTGACGCCA
Found at i:91127923 original size:41 final size:42
Alignment explanation
Indices: 91127866--91127949 Score: 127
Period size: 41 Copynumber: 2.0 Consensus size: 42
91127856 CTCGGCATGT
*
91127866 GATTTCATGTAAGACCATATCTGGGAT-ATGGCGTTG-TATGA
1 GATTTCATGTAAGACCATATCTGGG-TCATGGCATTGATATGA
*
91127907 GATTTCATGTAAGACCATGTCTGGGTCATGGCATTGATATGA
1 GATTTCATGTAAGACCATATCTGGGTCATGGCATTGATATGA
91127949 G
1 G
91127950 GTCCTGTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
40 1 0.03
41 32 0.82
42 6 0.15
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.33
Consensus pattern (42 bp):
GATTTCATGTAAGACCATATCTGGGTCATGGCATTGATATGA
Found at i:91128011 original size:48 final size:48
Alignment explanation
Indices: 91127955--91128081 Score: 182
Period size: 48 Copynumber: 2.6 Consensus size: 48
91127945 ATGAGGTCCT
*
91127955 GTATAAGACCATGTCTGGGACATGGCATCGGCACCGATAAGAGACTTC
1 GTATAAGACCATGTCTGGGACATGGCATCGGCACCGACAAGAGACTTC
* *
91128003 GTATAAGACTATGTCTGGGACATGGCATCGGCACCGACATGAGACTTC
1 GTATAAGACCATGTCTGGGACATGGCATCGGCACCGACAAGAGACTTC
* * * * *
91128051 GTATAAGATCATATCTGAGATATGGAATCGG
1 GTATAAGACCATGTCTGGGACATGGCATCGG
91128082 TATGTAGACC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
GTATAAGACCATGTCTGGGACATGGCATCGGCACCGACAAGAGACTTC
Found at i:91133641 original size:17 final size:17
Alignment explanation
Indices: 91133619--91133673 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 17
91133609 TAACCCTTTT
91133619 ATTCAAAAAATCATTCA
1 ATTCAAAAAATCATTCA
* **
91133636 ATTC--AAAACCATTTT
1 ATTCAAAAAATCATTCA
91133651 ATTCAAAAAATCATTCA
1 ATTCAAAAAATCATTCA
91133668 ATTCAA
1 ATTCAA
91133674 TACATATACA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
15 12 0.40
17 18 0.60
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (17 bp):
ATTCAAAAAATCATTCA
Found at i:91133648 original size:15 final size:15
Alignment explanation
Indices: 91133625--91133673 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
91133615 TTTTATTCAA
91133625 AAAATCATTCAATTC
1 AAAATCATTCAATTC
* **
91133640 AAAACCATTTTATTC
1 AAAATCATTCAATTC
91133655 AAAAAATCATTCAATTC
1 --AAAATCATTCAATTC
91133672 AA
1 AA
91133674 TACATATACA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
15 14 0.54
17 12 0.46
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAATCATTCAATTC
Found at i:91133651 original size:32 final size:32
Alignment explanation
Indices: 91133610--91133673 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
91133600 ATTTAAAATT
*
91133610 AACCCTTTTATTCAAAAAATCATTCAATTCAA
1 AACCATTTTATTCAAAAAATCATTCAATTCAA
91133642 AACCATTTTATTCAAAAAATCATTCAATTCAA
1 AACCATTTTATTCAAAAAATCATTCAATTCAA
91133674 TACATATACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.34
Consensus pattern (32 bp):
AACCATTTTATTCAAAAAATCATTCAATTCAA
Found at i:91139330 original size:42 final size:42
Alignment explanation
Indices: 91139271--91139382 Score: 136
Period size: 42 Copynumber: 2.7 Consensus size: 42
91139261 TGTGATTTCA
* * * * *
91139271 TGTAAGACCATATCTGGGATATGGCGTTGATATGAGAT-TCCG
1 TGTAAGACCATGTCTGGGACATGGCATCGATATGAGGTCT-CG
* *
91139313 TGTAAGACCATGTCTGGGACATGGCATCGGTATGAGGTCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGATATGAGGTCTCG
*
91139355 TATAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
91139383 TTCACCGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 60 0.98
43 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATCGATATGAGGTCTCG
Found at i:91139419 original size:48 final size:48
Alignment explanation
Indices: 91139352--91139480 Score: 204
Period size: 48 Copynumber: 2.7 Consensus size: 48
91139342 GTATGAGGTC
* **
91139352 TTGTATAAGACCATGTCTGGGACATGGCATCTTCACCGACATGAGACT
1 TTGTATAAGACCATATCTGGGACATGGCATCGGCACCGACATGAGACT
*
91139400 TTGTATAAGACCATCTCTGGGACATGGCATCGGCACCGACATGAGACT
1 TTGTATAAGACCATATCTGGGACATGGCATCGGCACCGACATGAGACT
* *
91139448 TCGTATAAGACCATATCTGGGATATGGCATCGG
1 TTGTATAAGACCATATCTGGGACATGGCATCGG
91139481 TATGTAGACC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (48 bp):
TTGTATAAGACCATATCTGGGACATGGCATCGGCACCGACATGAGACT
Found at i:91141857 original size:22 final size:22
Alignment explanation
Indices: 91141827--91141871 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
91141817 ATTGTATGAT
*
91141827 TTATGAAT-GCATGATAATTGCA
1 TTATGAATGGCATGA-AAATGCA
*
91141849 TTATTAATGGCATGAAAATGCA
1 TTATGAATGGCATGAAAATGCA
91141871 T
1 T
91141872 GAAATGCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (22 bp):
TTATGAATGGCATGAAAATGCA
Found at i:91145962 original size:33 final size:33
Alignment explanation
Indices: 91145920--91145987 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
91145910 TTGGAAAATA
* *
91145920 GCCTAGAAATTGTCCACATAGTTAGACACATGG
1 GCCTAGAAATTGTCCACACAGTTAGACACACGG
91145953 GCCTAGAAATTGTCCACACAGTTAGACACACGG
1 GCCTAGAAATTGTCCACACAGTTAGACACACGG
91145986 GC
1 GC
91145988 ATGTGTCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (33 bp):
GCCTAGAAATTGTCCACACAGTTAGACACACGG
Found at i:91150466 original size:29 final size:28
Alignment explanation
Indices: 91150434--91150536 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
91150424 GTGACGAGAT
* *
91150434 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
91150463 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
91150492 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
91150521 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91150537 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:91153641 original size:21 final size:21
Alignment explanation
Indices: 91153615--91153665 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
91153605 ATATTGTTAT
*
91153615 ACATGATATAACATGATATGC
1 ACATGATATAACATGAGATGC
***
91153636 ACATGATATGTTATGAGATGC
1 ACATGATATAACATGAGATGC
91153657 ACATGATAT
1 ACATGATAT
91153666 GCTATGATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (21 bp):
ACATGATATAACATGAGATGC
Found at i:91153666 original size:21 final size:21
Alignment explanation
Indices: 91153627--91153672 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
91153617 ATGATATAAC
* *
91153627 ATGATATGCACATGATATGTT
1 ATGAGATGCACATGATATGCT
91153648 ATGAGATGCACATGATATGCT
1 ATGAGATGCACATGATATGCT
91153669 ATGA
1 ATGA
91153673 TATACTCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (21 bp):
ATGAGATGCACATGATATGCT
Found at i:91161741 original size:10 final size:10
Alignment explanation
Indices: 91161726--91161786 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
91161716 ATATTGTTAT
91161726 ACATGATATG
1 ACATGATATG
91161736 ACATGATATG
1 ACATGATATG
91161746 AACATGATATG
1 -ACATGATATG
** *
91161757 TTATGAGATG
1 ACATGATATG
91161767 CACATGATATG
1 -ACATGATATG
91161778 -CTATGATAT
1 AC-ATGATAT
91161787 ACTCATTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (10 bp):
ACATGATATG
Found at i:91161751 original size:21 final size:20
Alignment explanation
Indices: 91161726--91161786 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
91161716 ATATTGTTAT
91161726 ACATGATATGACATGATATGA
1 ACATGATATG-CATGATATGA
* * *
91161747 ACATGATATGTTATGAGATGC
1 ACATGATATG-CATGATATGA
91161768 ACATGATATGCTATGATAT
1 ACATGATATGC-ATGATAT
91161787 ACTCATTATA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGCATGATATGA
Found at i:91165972 original size:40 final size:40
Alignment explanation
Indices: 91165916--91166088 Score: 172
Period size: 40 Copynumber: 4.3 Consensus size: 40
91165906 CATGAGCATT
* * * *
91165916 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
*
91165957 TGAATATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG
* *
91165997 TTG-TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
* ** * * *
91166037 TTACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 TGAATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
*
91166077 TG-TTATATCCGG
1 TGAATATATCCGG
91166089 TTAAATCCCG
Statistics
Matches: 110, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 10 0.09
40 90 0.82
41 10 0.09
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
Found at i:91166059 original size:80 final size:79
Alignment explanation
Indices: 91165926--91166088 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 79
91165916 TGAATGATAC
* * * * *
91165926 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGAACAAATCCGGGCTAAGACCCGAAGGCAATT-
91165990 GTGCGAGTTGTTATAT
65 GTGCGAG-TGTTATAT
* * * *
91166006 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGAACAAATCCGGGCTAAGACCCGAAGGCAATTG
**
91166071 TGCTTGTGTTATAT
66 TGCGAGTGTTATAT
91166085 CCGG
1 CCGG
91166089 TTAAATCCCG
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
79 12 0.17
80 56 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGAACAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGTTATAT
Found at i:91170272 original size:20 final size:20
Alignment explanation
Indices: 91170247--91170391 Score: 125
Period size: 20 Copynumber: 7.3 Consensus size: 20
91170237 CACATATGTG
* *
91170247 CCCCTGGTTGTACTTCGGTA
1 CCCCTGTTTGCACTTCGGTA
* * *
91170267 CCCCTGATTGCACATAC-GTT
1 CCCCTGTTTGCAC-TTCGGTA
*
91170287 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGCACTTCGGTA
* **
91170307 CCCCTGTTTGCACATAAGT-
1 CCCCTGTTTGCACTTCGGTA
*
91170326 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGCACTTCGGTA
* * * *
91170346 CTCGTGTTTGCACAT-GTGTG
1 CCCCTGTTTGCACTTCG-GTA
91170366 CCCCTGTTTGCACTTCGGTA
1 CCCCTGTTTGCACTTCGGTA
91170386 CCCCTG
1 CCCCTG
91170392 AACGCATTTA
Statistics
Matches: 95, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
19 18 0.19
20 74 0.78
21 3 0.03
ACGTcount: A:0.12, C:0.32, G:0.21, T:0.35
Consensus pattern (20 bp):
CCCCTGTTTGCACTTCGGTA
Found at i:91170292 original size:40 final size:40
Alignment explanation
Indices: 91170237--91170392 Score: 215
Period size: 40 Copynumber: 3.9 Consensus size: 40
91170227 TGAATGTTTA
*
91170237 CACATATGTGCCCCTGGTTGTACTTCGGTACCCCTGATTG
1 CACATATGTGCCCCTGTTTGTACTTCGGTACCCCTGATTG
* * *
91170277 CACATACGTTCCCCTGTTTGTACTTCGGTACCCCTGTTTG
1 CACATATGTGCCCCTGTTTGTACTTCGGTACCCCTGATTG
* * * *
91170317 CACATAAGT-CCCCTGTTTGTACTTCGGTACTCGTGTTTG
1 CACATATGTGCCCCTGTTTGTACTTCGGTACCCCTGATTG
* *
91170356 CACATGTGTGCCCCTGTTTGCACTTCGGTACCCCTGA
1 CACATATGTGCCCCTGTTTGTACTTCGGTACCCCTGA
91170393 ACGCATTTAC
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 35 0.34
40 67 0.66
ACGTcount: A:0.14, C:0.31, G:0.21, T:0.35
Consensus pattern (40 bp):
CACATATGTGCCCCTGTTTGTACTTCGGTACCCCTGATTG
Found at i:91170338 original size:79 final size:80
Alignment explanation
Indices: 91170231--91170391 Score: 225
Period size: 79 Copynumber: 2.0 Consensus size: 80
91170221 AATTATTGAA
* *
91170231 TGTTTACACATATGTGCCCCTGGTTGTACTTCGGTACCCCTGATTGCACATACGTTCCCCTGTTT
1 TGTTTACACATAAGTGCCCCTGGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTT
*
91170296 GTACTTCGGTACCCC
66 GCACTTCGGTACCCC
* * * * * **
91170311 TGTTTGCACATAAGT-CCCCTGTTTGTACTTCGGTACTCGTGTTTGCACATGTGTGCCCCTGTTT
1 TGTTTACACATAAGTGCCCCTGGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTT
91170375 GCACTTCGGTACCCC
66 GCACTTCGGTACCCC
91170390 TG
1 TG
91170392 AACGCATTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 58 0.82
80 13 0.18
ACGTcount: A:0.14, C:0.30, G:0.20, T:0.36
Consensus pattern (80 bp):
TGTTTACACATAAGTGCCCCTGGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTT
GCACTTCGGTACCCC
Found at i:91172518 original size:2 final size:2
Alignment explanation
Indices: 91172511--91172548 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
91172501 AATAAAAATC
91172511 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91172549 GAATATGACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91177302 original size:2 final size:2
Alignment explanation
Indices: 91177295--91177387 Score: 177
Period size: 2 Copynumber: 46.5 Consensus size: 2
91177285 GGAAAGTAAA
91177295 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
*
91177337 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
91177379 TC TC TC TC T
1 TC TC TC TC T
91177388 TAGAGAAACT
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 89 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:91179379 original size:47 final size:46
Alignment explanation
Indices: 91179317--91179439 Score: 151
Period size: 47 Copynumber: 2.6 Consensus size: 46
91179307 GATGTGTGCT
** *
91179317 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CATCAAGACGAGAGCC
* *
91179363 AGTGTAAAACCATGTCTGGGACATGGCA-CTGGCATTAAGACGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GGCATCAAGACGAGAGCC
91179411 AGTGTAAGACATGTCTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
91179440 ACCTCGAGAT
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
46 12 0.18
47 32 0.48
48 22 0.33
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGAGCC
Found at i:91179463 original size:48 final size:47
Alignment explanation
Indices: 91179317--91179714 Score: 191
Period size: 44 Copynumber: 8.6 Consensus size: 47
91179307 GATGTGTGCT
* *
91179317 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCC
* * * * *
91179363 AGTGTAAAACCATGTCTGGGACATGGCA-CTGGCATTAAGACGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATC-GGCCTCAATATGAGAGCC
* *
91179411 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGAGATATGCA-AGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTC-A-ATATG-AGAGCC
* * * ** * * *
91179459 AGTGTAAGACCTGTTTGGGACATGGCATCTG-CTTGACAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCC
* * ** * * *
91179503 AGTGTAAGACTTGTCTGGGACATGGCATCTG-CTTGACAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCC
* * * * *
91179547 AGTGTAAGACATGTCTAGGACTTGGCATCGACAC-CGATAGATAAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGC-CTC-A-ATATGAGAGCC
* * * * * * *
91179596 AGTGTAAGACCTGTCTGGGACGTGGC-T-TG-AT--ATATAAAAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCC
* * * * * *
91179638 AGTGTAAGACCTGTCTGGGACATGACATC-GACTTAGATGTGTGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCA-ATATGAGAGCC
* *
91179685 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACATGGCATC
91179715 AGCATCGTAC
Statistics
Matches: 272, Mismatches: 57, Indels: 44
0.73 0.15 0.12
Matches are distributed among these distances:
42 32 0.12
43 2 0.01
44 70 0.26
46 18 0.07
47 49 0.18
48 69 0.25
49 32 0.12
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCC
Found at i:91180404 original size:20 final size:20
Alignment explanation
Indices: 91180379--91180420 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
91180369 AATAGTTATG
91180379 GATTATAATTTATATGTTTA
1 GATTATAATTTATATGTTTA
91180399 GATTATAATTTATATGTTTA
1 GATTATAATTTATATGTTTA
91180419 GA
1 GA
91180421 ATCTTTAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (20 bp):
GATTATAATTTATATGTTTA
Found at i:91184162 original size:35 final size:35
Alignment explanation
Indices: 91184123--91184190 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
91184113 TGTGAGTTGG
91184123 TGATGTTGTATAGGCTTACACTAAACTTATGGCAC
1 TGATGTTGTATAGGCTTACACTAAACTTATGGCAC
91184158 TGATGTTGTATAGGCTTACACTAAACTTATGGC
1 TGATGTTGTATAGGCTTACACTAAACTTATGGC
91184191 TTTTTTAGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (35 bp):
TGATGTTGTATAGGCTTACACTAAACTTATGGCAC
Found at i:91186511 original size:25 final size:24
Alignment explanation
Indices: 91186475--91186528 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
91186465 CACAAATGTA
91186475 GCTCTTTATGAGCGTCCTGATATAG
1 GCTCTTTATGAGCGTCCTGATAT-G
* * *
91186500 GCTCTTTGTGAGCTTCTTGATATG
1 GCTCTTTATGAGCGTCCTGATATG
91186524 GCTCT
1 GCTCT
91186529 CTTGAACATC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (24 bp):
GCTCTTTATGAGCGTCCTGATATG
Found at i:91189401 original size:66 final size:68
Alignment explanation
Indices: 91189325--91189511 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
91189315 TAGTACCACT
*
91189325 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
91189387 CACG
65 CACG
91189391 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
91189456 ATCACG
63 ATCACG
91189462 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
91189512 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:91189436 original size:71 final size:71
Alignment explanation
Indices: 91189348--91189511 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91189338 CGATTTGTCT
91189348 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91189413 CTTTCA
66 CTTTCA
91189419 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91189484 CTTTCA
66 CTTTCA
91189490 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
91189512 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:91189549 original size:71 final size:70
Alignment explanation
Indices: 91189348--91189545 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
91189338 CGATTTGTCT
* * *
91189348 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
91189413 CTTTCA
65 CTTTCA
* * *
91189419 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
91189484 CTTTCA
65 CTTTCA
* *
91189490 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
91189546 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:91191688 original size:16 final size:16
Alignment explanation
Indices: 91191667--91191707 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
91191657 CAAGATCTGT
91191667 CTTAGGTTTCATTCCC
1 CTTAGGTTTCATTCCC
91191683 CTTAGGTTTCATTCCC
1 CTTAGGTTTCATTCCC
91191699 CTTAGGTTT
1 CTTAGGTTT
91191708 TTATGAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.12, C:0.27, G:0.15, T:0.46
Consensus pattern (16 bp):
CTTAGGTTTCATTCCC
Found at i:91193147 original size:47 final size:47
Alignment explanation
Indices: 91193065--91193184 Score: 120
Period size: 47 Copynumber: 2.6 Consensus size: 47
91193055 AGTGCTACTA
* * *
91193065 TAAGACATGTCTGGGACAT-GCATCGGCTACAAGATGAT-AGTCAGTG
1 TAAGACATGTCTAGGACATGGCATCGACTACAAGATG-TGAGCCAGTG
**
91193111 TAAGATCATGTCTAGGACATGGCATCGACT-TGAGATGTGAGCCAGTG
1 TAAGA-CATGTCTAGGACATGGCATCGACTACAAGATGTGAGCCAGTG
* * *
91193158 TAAGACCGTGTTTAGGACATGACATCG
1 TAAGA-CATGTCTAGGACATGGCATCG
91193185 GCACCTTACC
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
46 6 0.10
47 48 0.77
48 8 0.13
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (47 bp):
TAAGACATGTCTAGGACATGGCATCGACTACAAGATGTGAGCCAGTG
Found at i:91193258 original size:31 final size:31
Alignment explanation
Indices: 91193223--91193284 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
91193213 AATATCCAGT
* *
91193223 AGTATTCTGAATGGTTGAATGGTGAAAGTTA
1 AGTATTCCGAATGGTTCAATGGTGAAAGTTA
91193254 AGTATTCCGAATGGTTCAATGGTGAAAGTTA
1 AGTATTCCGAATGGTTCAATGGTGAAAGTTA
91193285 TGTTCCTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.34
Consensus pattern (31 bp):
AGTATTCCGAATGGTTCAATGGTGAAAGTTA
Found at i:91200711 original size:47 final size:46
Alignment explanation
Indices: 91200583--91200748 Score: 121
Period size: 47 Copynumber: 3.6 Consensus size: 46
91200573 AGTGCTACTA
* * *
91200583 TAAGA-CATGTCTGGGACATGCATCAGCCT-CGAAACT-TAAGCCAGAT-
1 TAAGACCATGTCTGGGACATGCATC-GACTAC-AGA-TGTGAGCCAG-TG
* * **
91200629 TAAGA-CATGTTTGGGACATGCATCGGCTACGAGATGAT-AGTGAGTG
1 TAAGACCATGTCTGGGACATGCATCGACTAC-AGATG-TGAGCCAGTG
91200675 TAAGACCATGTCTGGGACATGTCATCGACTTA-AGATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATG-CATCGAC-TACAGATGTGAGCCAGTG
* *
91200722 TAAGACCGTGTCTAGGACATGGCATCG
1 TAAGACCATGTCTGGGACAT-GCATCG
91200749 GCACCTTACC
Statistics
Matches: 100, Mismatches: 11, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
45 5 0.05
46 37 0.37
47 49 0.49
48 7 0.07
49 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
TAAGACCATGTCTGGGACATGCATCGACTACAGATGTGAGCCAGTG
Found at i:91204678 original size:27 final size:28
Alignment explanation
Indices: 91204622--91204691 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
91204612 AAATTTGTAC
91204622 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
91204650 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
91204677 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
91204692 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:91204702 original size:27 final size:27
Alignment explanation
Indices: 91204622--91204703 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
91204612 AAATTTGTAC
* *
91204622 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
91204650 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
91204677 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
91204704 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:91212502 original size:27 final size:28
Alignment explanation
Indices: 91212446--91212515 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
91212436 AAATTTGTAC
91212446 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
91212474 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
91212501 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
91212516 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:91212526 original size:27 final size:27
Alignment explanation
Indices: 91212446--91212527 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
91212436 AAATTTGTAC
* *
91212446 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
91212474 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
91212501 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
91212528 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:91216604 original size:29 final size:29
Alignment explanation
Indices: 91216571--91216635 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
91216561 CATACTTAAC
91216571 TGGAAGCCTCCGAGAAATATTACTAAGGT
1 TGGAAGCCTCCGAGAAATATTACTAAGGT
*
91216600 TGGAAGCCTCCGAGAAATATTACTGAGGT
1 TGGAAGCCTCCGAGAAATATTACTAAGGT
*
91216629 TCGAAGC
1 TGGAAGC
91216636 TTTTTGGGAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.23
Consensus pattern (29 bp):
TGGAAGCCTCCGAGAAATATTACTAAGGT
Found at i:91220298 original size:27 final size:28
Alignment explanation
Indices: 91220242--91220311 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
91220232 AAATTTGTAC
91220242 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
91220270 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
91220297 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
91220312 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:91220322 original size:27 final size:27
Alignment explanation
Indices: 91220242--91220323 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
91220232 AAATTTGTAC
* *
91220242 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
91220270 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
91220297 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
91220324 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:91224892 original size:20 final size:20
Alignment explanation
Indices: 91224867--91224913 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
91224857 CTATTCAAAC
*
91224867 AATATTACTTGAATATTTAT
1 AATATTACATGAATATTTAT
*
91224887 AATATTAGATGAATATTTAT
1 AATATTACATGAATATTTAT
91224907 AATATTA
1 AATATTA
91224914 TGTCTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (20 bp):
AATATTACATGAATATTTAT
Found at i:91225699 original size:29 final size:29
Alignment explanation
Indices: 91225656--91225712 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
91225646 GGTTTATCCG
*
91225656 ATGGCTTGTTTGACACCTACCAAAACAAT
1 ATGGCTTGTTCGACACCTACCAAAACAAT
*
91225685 ATGGTTTGTTCGACACCTACCAAAACAA
1 ATGGCTTGTTCGACACCTACCAAAACAA
91225713 GGTCATCACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (29 bp):
ATGGCTTGTTCGACACCTACCAAAACAAT
Found at i:91230064 original size:19 final size:17
Alignment explanation
Indices: 91230040--91230074 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
91230030 CTTGTTAAAA
91230040 ATTAAAAAGAAGTAAAAGG
1 ATTAAAAA-AA-TAAAAGG
91230059 ATTAAAAAAATAAAAG
1 ATTAAAAAAATAAAAG
91230075 ATTTTGGACC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (17 bp):
ATTAAAAAAATAAAAGG
Found at i:91231806 original size:20 final size:20
Alignment explanation
Indices: 91231781--91231825 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
91231771 AGGGACTAAA
* *
91231781 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
91231801 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
91231821 ATGAA
1 ATGAA
91231826 TACATGTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:91234489 original size:39 final size:39
Alignment explanation
Indices: 91234445--91234522 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
91234435 AGAACCAATG
91234445 GAGAATAAGACATTTTTTTTGTCTTTAAAATTCTTGGTT
1 GAGAATAAGACATTTTTTTTGTCTTTAAAATTCTTGGTT
91234484 GAGAATAAGACATTTTTTTTGTCTTTAAAATTCTTGGTT
1 GAGAATAAGACATTTTTTTTGTCTTTAAAATTCTTGGTT
91234523 TTCTTTTGAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.08, G:0.15, T:0.49
Consensus pattern (39 bp):
GAGAATAAGACATTTTTTTTGTCTTTAAAATTCTTGGTT
Found at i:91239153 original size:17 final size:17
Alignment explanation
Indices: 91239133--91239175 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
91239123 GATGAAATGA
* *
91239133 TTTTAATATCTTTGTAT
1 TTTTAATATCCTTCTAT
91239150 TTTTAATATCCTTCTAT
1 TTTTAATATCCTTCTAT
*
91239167 TTTAAATAT
1 TTTTAATAT
91239176 ATACTGAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.60
Consensus pattern (17 bp):
TTTTAATATCCTTCTAT
Found at i:91239724 original size:37 final size:34
Alignment explanation
Indices: 91239638--91239792 Score: 134
Period size: 35 Copynumber: 4.4 Consensus size: 34
91239628 GCAACCTTTG
* * **
91239638 AAAAAGGTTGCGATACACCCGTTTAATACAACCAT
1 AAAAAGGTTGCGATAGA-CCGTTTAAGACAACGTT
91239673 AAAAAGGTTGCGATAGACCGATTTAAGACAACTGTT
1 AAAAAGGTTGCGATAGACCG-TTTAAGACAAC-GTT
91239709 AAAAATGGTTGCGATAGACTCGTTT-AGAGCAACGTT
1 AAAAA-GGTTGCGATAGAC-CGTTTAAGA-CAACGTT
* * ** * *
91239745 AAAAAGATTG-GTATAGATTCGTTTTCGGCAACCTT
1 AAAAAGGTTGCG-ATAGA-CCGTTTAAGACAACGTT
91239780 AAAAAGGTTGCGA
1 AAAAAGGTTGCGA
91239793 GAAGCCTTGT
Statistics
Matches: 101, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
34 4 0.04
35 56 0.55
36 19 0.19
37 20 0.20
38 2 0.02
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.26
Consensus pattern (34 bp):
AAAAAGGTTGCGATAGACCGTTTAAGACAACGTT
Found at i:91239897 original size:37 final size:36
Alignment explanation
Indices: 91239707--91240028 Score: 138
Period size: 38 Copynumber: 8.8 Consensus size: 36
91239697 AAGACAACTG
* * * *
91239707 TTAAAAATGGTTGCGATAGA-CTCGTTTA-GAGCAACG
1 TTAAAAA-AGTTGCTATAGATCTTGTTTACG-GCAACC
* * *
91239743 TT-AAAAAGATTGGTATAGAT-TCGTTTTCGGCAACC
1 TTAAAAAAG-TTGCTATAGATCTTGTTTACGGCAACC
* * * *
91239778 TTAAAAAGGTTGCGAGA-AGCCTTGTTTACGGCAACCC
1 TTAAAAAAGTTGCTATAGA-TCTTGTTTACGGCAA-CC
* * *
91239815 TTAATAAAAATTGCTATAGATCTTATCTACGGCAACC
1 TTAA-AAAAGTTGCTATAGATCTTGTTTACGGCAACC
* *
91239852 TTTTAAAAAAGTTG-TGGTATATCTTGTTTACGGCAACC
1 --TTAAAAAAGTTGCT-ATAGATCTTGTTTACGGCAACC
* * * * * *
91239890 TTGAAAAAAGGTTGCGATAG-GCCTGTCTACGGAAACATT
1 TT-AAAAAA-GTTGCTATAGATCTTGTTTACGGCAAC--C
* * * * * *
91239929 TTAAAAATGTTACAATAGACCTTGTCTATGGCAACC
1 TTAAAAAAGTTGCTATAGATCTTGTTTACGGCAACC
* * * * *
91239965 TTAAAAAGGTTGGTGATAGAT-TCGTTTAAGGTAACC
1 TTAAAAAAGTTGCT-ATAGATCTTGTTTACGGCAACC
* * *
91240001 CTAAAAAGGTTGCGATAGATCTTGTTTA
1 TTAAAAAAGTTGCTATAGATCTTGTTTA
91240029 AGGAAACTTT
Statistics
Matches: 213, Mismatches: 53, Indels: 40
0.70 0.17 0.13
Matches are distributed among these distances:
34 2 0.01
35 36 0.17
36 59 0.28
37 40 0.19
38 69 0.32
39 7 0.03
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (36 bp):
TTAAAAAAGTTGCTATAGATCTTGTTTACGGCAACC
Found at i:91240006 original size:36 final size:36
Alignment explanation
Indices: 91239961--91240127 Score: 126
Period size: 35 Copynumber: 4.6 Consensus size: 36
91239951 TGTCTATGGC
* *
91239961 AACCTTAAAAAGGTTGGTGATAGAT-TCGTTTAAGGT
1 AACCCTAAAAAGGTT-GCGATAGATCTCGTTTAAGGT
* *
91239997 AACCCTAAAAAGGTTGCGATAGATCTTGTTTAAGGA
1 AACCCTAAAAAGGTTGCGATAGATCTCGTTTAAGGT
** * * * **
91240033 AACTTTTAGAAAAGGTTGCGATTGACCT-GTCTAAGAC
1 AAC-CCTA-AAAAGGTTGCGATAGATCTCGTTTAAGGT
** ** *
91240070 AACGTTAAAAATTTTGCGATAGAT-TCGTTTACA-GC
1 AACCCTAAAAAGGTTGCGATAGATCTCGTTTA-AGGT
91240105 AACCCTAAAAAGGTTGCGATAGA
1 AACCCTAAAAAGGTTGCGATAGA
91240128 CCTTTTCCAA
Statistics
Matches: 104, Mismatches: 22, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
34 1 0.01
35 45 0.43
36 30 0.29
37 11 0.11
38 17 0.16
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (36 bp):
AACCCTAAAAAGGTTGCGATAGATCTCGTTTAAGGT
Found at i:91240124 original size:108 final size:110
Alignment explanation
Indices: 91239894--91240127 Score: 280
Period size: 108 Copynumber: 2.2 Consensus size: 110
91239884 GCAACCTTGA
* * *
91239894 AAAAAGGTTGCGATAG-GCCTGTCTACGGAAACATTTTAAAAATGTTACAATAGACCTTGTCTAT
1 AAAAAGGTTGCGATAGAGCCTGTCTAAGGAAACATTTTAAAAAGGTTACAATAGACCTTGTCTAA
* * *
91239958 GGCAACCTTAAAAAGGTTGGTGATAGATTCGTTTAAGGTAACCCT
66 GACAACCTTAAAAAGGTTGGCGATAGATTCGTTTAAGGCAACCCT
* * * * * *
91240003 AAAAAGGTTGCGATAGATCTTGTTTAAGGAAAC-TTTTAGAAAAGGTTGCGATTGACC-TGTCTA
1 AAAAAGGTTGCGATAGAGCCTGTCTAAGGAAACATTTTA-AAAAGGTTACAATAGACCTTGTCTA
* * *
91240066 AGACAACGTTAAAAA-TTTTGCGATAGATTCGTTTACA-GCAACCCT
65 AGACAACCTTAAAAAGGTTGGCGATAGATTCGTTTA-AGGCAACCCT
91240111 AAAAAGGTTGCGATAGA
1 AAAAAGGTTGCGATAGA
91240128 CCTTTTCCAA
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
108 41 0.38
109 40 0.37
110 26 0.24
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (110 bp):
AAAAAGGTTGCGATAGAGCCTGTCTAAGGAAACATTTTAAAAAGGTTACAATAGACCTTGTCTAA
GACAACCTTAAAAAGGTTGGCGATAGATTCGTTTAAGGCAACCCT
Found at i:91240149 original size:35 final size:36
Alignment explanation
Indices: 91240002--91240161 Score: 94
Period size: 35 Copynumber: 4.4 Consensus size: 36
91239992 AAGGTAACCC
* * *
91240002 TAAAAAGGTTGCGATAGATCTTGTT-TAAGGAAACTTT
1 TAAAAAGGTTGCGATAGACCTT-TTCCAAGGCAAC-TT
* * * * *
91240039 TAGAAAAGGTTGCGATTGACC-TGTCTAAGACAACGT
1 TA-AAAAGGTTGCGATAGACCTTTTCCAAGGCAACTT
** * * * **
91240075 TAAAAATTTTGCGATAGATTCGTTTAC-A-GCAACCC
1 TAAAAAGGTTGCGATAGA-CCTTTTCCAAGGCAACTT
91240110 TAAAAAGGTTGCGATAGACCTTTTCCAAGGCAACTT
1 TAAAAAGGTTGCGATAGACCTTTTCCAAGGCAACTT
* * *
91240146 AAAAAAAGTTGGGATA
1 TAAAAAGGTTGCGATA
91240162 AACCCGTCTA
Statistics
Matches: 91, Mismatches: 26, Indels: 13
0.70 0.20 0.10
Matches are distributed among these distances:
34 5 0.05
35 34 0.37
36 24 0.26
37 12 0.13
38 16 0.18
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (36 bp):
TAAAAAGGTTGCGATAGACCTTTTCCAAGGCAACTT
Found at i:91240178 original size:35 final size:34
Alignment explanation
Indices: 91240139--91240231 Score: 116
Period size: 35 Copynumber: 2.6 Consensus size: 34
91240129 CTTTTCCAAG
*
91240139 GCAACTTAAAAAAAGTTGGGATAAACCCGTCTAAA
1 GCAACTT-AAAAAGGTTGGGATAAACCCGTCTAAA
* *
91240174 GCAACCTTAAAATGGTTAGGG-TAAACCCGTCTAAG
1 GCAA-CTTAAAAAGGTT-GGGATAAACCCGTCTAAA
91240209 GCAAACTTAAAAAGGTTGGGATA
1 GC-AACTTAAAAAGGTTGGGATA
91240232 GATCTTTGTC
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
34 3 0.06
35 39 0.78
36 8 0.16
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (34 bp):
GCAACTTAAAAAGGTTGGGATAAACCCGTCTAAA
Found at i:91240563 original size:74 final size:75
Alignment explanation
Indices: 91240428--91240576 Score: 189
Period size: 74 Copynumber: 2.0 Consensus size: 75
91240418 TAATTTATAA
* * * *
91240428 ACAAAATCCTAATAGAAGTAGTCAACAAGTTGCGAACATGTTGTCAACCTATTTCACATGACATC
1 ACAAAATCCTAATAAAAGCAATCAACAAGTTGCGAACATGTTGTCAACCTATTTCACATGAC-GC
91240493 -AAAAAATTAT
65 AAAAAAATTAT
* *
91240503 ACAAAATCCTAATAAAAGCAATCAACACA-TTGC-AACATGTTGTCAACTTGA-TTCCCATGACG
1 ACAAAATCCTAATAAAAGCAATCAACA-AGTTGCGAACATGTTGTCAACCT-ATTTCACATGACG
91240565 CAAAAAAATTAT
64 CAAAAAAATTAT
91240577 GAAACAACTG
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
73 1 0.02
74 34 0.52
75 29 0.45
76 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.26
Consensus pattern (75 bp):
ACAAAATCCTAATAAAAGCAATCAACAAGTTGCGAACATGTTGTCAACCTATTTCACATGACGCA
AAAAAATTAT
Found at i:91242937 original size:39 final size:39
Alignment explanation
Indices: 91242887--91243092 Score: 290
Period size: 39 Copynumber: 5.3 Consensus size: 39
91242877 TATATGAGAT
*
91242887 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
*
91242926 TGGAAAAATATCCGGACATGAGATCCGCAGGCTATATGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
* * *
91242965 TAGAAATATATCCGGACTTGAGGTCCGCAGGCTATATGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
* *
91243004 TGGGAAAATATCCGGACATGAGATCCGCAGGCT-T-TGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
* * * **
91243041 TAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
91243080 TGGAAAAATATCC
1 TGGAAAAATATCC
91243093 AGGTTAAAGA
Statistics
Matches: 146, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
37 31 0.21
38 1 0.01
39 114 0.78
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (39 bp):
TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:91243108 original size:76 final size:77
Alignment explanation
Indices: 91242889--91243120 Score: 360
Period size: 78 Copynumber: 3.0 Consensus size: 77
91242879 TATGAGATTG
*
91242889 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGC
1 GAAATATATCCGGACTTGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGC
91242954 AGGCTATATGCTA
66 AGGCT-TATGCTA
*
91242967 GAAATATATCCGGACTTGAGGTCCGCAGGCTATATGCTGGGAAAATATCCGGACATGAGATCCGC
1 GAAATATATCCGGACTTGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGC
91243032 AGGCTT-TGCTA
66 AGGCTTATGCTA
** ** * *
91243043 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCAGGTTA-AAGACCCG
1 GAAATATATCCGGACTTGAGGTCCGCAGGCTATATGCTGGAAAAATATCC-GGACATGAGATCCG
91243107 CAGGCTTATGCTA
65 CAGGCTTATGCTA
91243120 G
1 G
91243121 TAATGTATTC
Statistics
Matches: 143, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
76 65 0.45
77 10 0.07
78 68 0.48
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (77 bp):
GAAATATATCCGGACTTGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGC
AGGCTTATGCTA
Found at i:91243317 original size:2 final size:2
Alignment explanation
Indices: 91243312--91243375 Score: 101
Period size: 2 Copynumber: 32.0 Consensus size: 2
91243302 TATATATATA
* * *
91243312 TG TG TG TG TG TG TG TG TA TG TG TG TG TA TG TG TG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
91243354 TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG
91243376 AATGAATTCG
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.03, C:0.02, G:0.47, T:0.48
Consensus pattern (2 bp):
TG
Found at i:91248758 original size:40 final size:39
Alignment explanation
Indices: 91248668--91248852 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
91248658 TCAAATGATG
* * *
91248668 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
91248708 TCCGGACTAAGATCTGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
91248748 TTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
91248787 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
91248828 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
91248853 AATGAGTAGT
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91248806 original size:79 final size:81
Alignment explanation
Indices: 91248669--91248850 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
91248659 CAAATGATGT
* * *
91248669 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCTGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
91248733 GTGCGAGTTACTA-ATT
66 GTGCGAGTTACTATA-A
* * * **
91248749 TCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
91248811 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
91248828 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
91248851 TGAATGAGTA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.67
80 28 0.32
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:91248874 original size:79 final size:78
Alignment explanation
Indices: 91248723--91248885 Score: 181
Period size: 79 Copynumber: 2.1 Consensus size: 78
91248713 ACTAAGATCT
** * *
91248723 GAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGATGAGAGTTACT-AAT
*
91248788 CCGGGTTAAGTCCC
65 CCGGGTTAAATCCC
*
91248802 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAGTAGTTA-
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCA-TTG-ATGAG-AGTTAC
*
91248865 T-ATCC-GGTTAAATTCC
61 TAATCCGGGTTAAATCCC
91248881 GAAGG
1 GAAGG
91248886 TGCGTGATTC
Statistics
Matches: 72, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
78 2 0.03
79 44 0.61
80 14 0.19
81 3 0.04
82 4 0.06
83 5 0.07
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (78 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGATGAGAGTTACTAATC
CGGGTTAAATCCC
Found at i:91254261 original size:39 final size:39
Alignment explanation
Indices: 91254211--91254416 Score: 295
Period size: 39 Copynumber: 5.3 Consensus size: 39
91254201 TATATGAGAT
*
91254211 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
*
91254250 TGGAAAAATATCCGGACATGAGATCCGCAGGCTATATGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
* * *
91254289 TAGAAATATATCCGGACTTGAGGTCCGCAGGCTATATGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
* *
91254328 TGGAAAAATATCCTGACATGAGATCCGCAGGCTATATGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
* * * * **
91254367 TAGAAATATATCCGGACTTGAGGTCCGTAGGCTACGTGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
91254406 TGGAAAAATAT
1 TGGAAAAATAT
91254417 TCGGGTTAAA
Statistics
Matches: 146, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 146 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (39 bp):
TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:91254434 original size:117 final size:116
Alignment explanation
Indices: 91254211--91254444 Score: 290
Period size: 117 Copynumber: 2.0 Consensus size: 116
91254201 TATATGAGAT
* * *
91254211 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCC
1 TGGAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCC
* * * **
91254276 GCAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAGGCTATATGC
66 GCAGGCTACATGCTAGAAAAATATCCGGACTTAAGACCCGCAGGCT-TATGC
* * * *
91254328 TGGAAAAATATCCTGACATGAGATCCGCAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCC
1 TGGAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCC
* * * * *
91254393 GTAGGCTACGTGCTGGAAAAATATTCGG-GTTAAAGACCCGCAGGCTTATGC
66 GCAGGCTACATGCTAGAAAAATATCCGGACTT-AAGACCCGCAGGCTTATGC
91254444 T
1 T
91254445 AGTAATGTAT
Statistics
Matches: 99, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
116 8 0.08
117 91 0.92
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (116 bp):
TGGAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCC
GCAGGCTACATGCTAGAAAAATATCCGGACTTAAGACCCGCAGGCTTATGC
Found at i:91254438 original size:78 final size:78
Alignment explanation
Indices: 91254213--91254416 Score: 363
Period size: 78 Copynumber: 2.6 Consensus size: 78
91254203 TATGAGATTG
*
91254213 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGC
1 GAAATATATCCGGACTTGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGC
91254278 AGGCTATATGCTA
66 AGGCTATATGCTA
*
91254291 GAAATATATCCGGACTTGAGGTCCGCAGGCTATATGCTGGAAAAATATCCTGACATGAGATCCGC
1 GAAATATATCCGGACTTGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGC
91254356 AGGCTATATGCTA
66 AGGCTATATGCTA
* **
91254369 GAAATATATCCGGACTTGAGGTCCGTAGGCTACGTGCTGGAAAAATAT
1 GAAATATATCCGGACTTGAGGTCCGCAGGCTATATGCTGGAAAAATAT
91254417 TCGGGTTAAA
Statistics
Matches: 121, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 121 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (78 bp):
GAAATATATCCGGACTTGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGC
AGGCTATATGCTA
Found at i:91254649 original size:2 final size:2
Alignment explanation
Indices: 91254644--91254711 Score: 136
Period size: 2 Copynumber: 34.0 Consensus size: 2
91254634 TATATATATA
91254644 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
91254686 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
91254712 AATGAATTCG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 66 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:91261250 original size:28 final size:28
Alignment explanation
Indices: 91261181--91261281 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
91261171 GACAAGATTG
* * * *
91261181 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
91261211 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
91261239 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
91261268 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91261282 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:91269205 original size:28 final size:28
Alignment explanation
Indices: 91269136--91269236 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
91269126 GACAAGATTG
* * * *
91269136 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
91269166 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
91269194 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
91269223 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91269237 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:91278444 original size:35 final size:34
Alignment explanation
Indices: 91278405--91278510 Score: 149
Period size: 35 Copynumber: 3.0 Consensus size: 34
91278395 GCAGGCTTTT
* **
91278405 ACCAGTAGCTGGAGCAGGTGGTGGACGGCAGATGC
1 ACCAGTGGCTGG-GCAGGCAGTGGACGGCAGATGC
91278440 ACCAGTGGCTAGGGCAGGCAGTGGACGGCAGATGC
1 ACCAGTGGCT-GGGCAGGCAGTGGACGGCAGATGC
*
91278475 ACCCGTGGCTGGGGCAGGCAGTGGACGGCAGATGC
1 ACCAGTGGCT-GGGCAGGCAGTGGACGGCAGATGC
91278510 A
1 A
91278511 TTAGGTTTGC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
35 63 0.97
36 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.43, T:0.12
Consensus pattern (34 bp):
ACCAGTGGCTGGGCAGGCAGTGGACGGCAGATGC
Found at i:91279146 original size:22 final size:23
Alignment explanation
Indices: 91279090--91279146 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 23
91279080 TACTGAAAAG
* *
91279090 TTTTTGTTTTA-ATTTTTTTTCA
1 TTTTTATTTTATATTTTTTCTCA
***
91279112 TTTTTAACATATATTTTTTCT-A
1 TTTTTATTTTATATTTTTTCTCA
91279134 TTTTTATTTTATA
1 TTTTTATTTTATA
91279147 AATTTTTTGA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (23 bp):
TTTTTATTTTATATTTTTTCTCA
Found at i:91279204 original size:8 final size:8
Alignment explanation
Indices: 91279193--91279243 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 8
91279183 GACTAAAATA
91279193 TTAAATTT
1 TTAAATTT
91279201 TT-AATTT
1 TTAAATTT
91279208 TTAAATATTT
1 TT-AA-ATTT
91279218 TTGAAGATTT
1 TT-AA-ATTT
91279228 TTATAATTT
1 TTA-AATTT
91279237 TTAAATT
1 TTAAATT
91279244 AACATATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 7 0.19
8 6 0.16
9 9 0.24
10 15 0.41
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (8 bp):
TTAAATTT
Found at i:91279850 original size:7 final size:7
Alignment explanation
Indices: 91279818--91279957 Score: 50
Period size: 7 Copynumber: 19.9 Consensus size: 7
91279808 TTAAAAAAAC
91279818 CCCTAAA
1 CCCTAAA
*
91279825 CCTTAAA
1 CCCTAAA
*
91279832 CCAT-AA
1 CCCTAAA
*
91279838 CTCTAAA
1 CCCTAAA
91279845 CCCTAAAA
1 CCCT-AAA
* *
91279853 TCTTAAA
1 CCCTAAA
*
91279860 CCCCAAA
1 CCCTAAA
91279867 CCCATAAA
1 CCC-TAAA
* *
91279875 CACAAAA
1 CCCTAAA
91279882 CCCTAAAA
1 CCCT-AAA
* *
91279890 CCTTACA
1 CCCTAAA
*
91279897 CCGTAAA
1 CCCTAAA
*
91279904 CCAT-AA
1 CCCTAAA
** *
91279910 CTATAAT
1 CCCTAAA
*
91279917 CTCTAAA
1 CCCTAAA
*
91279924 CCTTAAA
1 CCCTAAA
*
91279931 CTCTAAA
1 CCCTAAA
**
91279938 CAGTAAA
1 CCCTAAA
*
91279945 CCTTAAA
1 CCCTAAA
91279952 CCCTAA
1 CCCTAA
91279958 CCTAAATTGA
Statistics
Matches: 95, Mismatches: 33, Indels: 10
0.69 0.24 0.07
Matches are distributed among these distances:
6 9 0.09
7 70 0.74
8 16 0.17
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.21
Consensus pattern (7 bp):
CCCTAAA
Found at i:91280466 original size:131 final size:132
Alignment explanation
Indices: 91280192--91280988 Score: 966
Period size: 131 Copynumber: 6.0 Consensus size: 132
91280182 TATGTTGACA
* * * * * * *
91280192 AGTCTATCTG-AACACTTAGGAAAGTGGCCCCCCAAAACTGTAGTCTAAGGACTAGACAAAAGCC
1 AGTCTATC-GCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCC
** *
91280256 AACTCTTGCTCAAGCGTTGCCTTAGGCATACATATCGCAACCCTTA-ACAAAGAGTTGCCGAAAG
65 AACTCTTATTCAAGCGTTGCGTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAG
*
91280320 CGC
130 CGT
* *
91280323 AGTTTATCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCA
1 AGTCTATCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCA
* * * **
91280388 ACTCTTATTCAAGCATTGCGTTAGGCATACATATCCCAACCCTTATATAAAGAGTTAACGAAAGC
66 ACTCTTATTCAAGCGTTGCGTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAGC
91280453 GT
131 GT
* **
91280455 AGTCTAT-GCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCCTAGGACTACACAAACTCCA
1 AGTCTATCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCA
*
91280519 ACTCTTATGCAAGCGTTGTCG-TAGGCATACATATCGCAACCCTTATACAAAGAGTTGCC-AAAG
66 ACTCTTATTCAAGCGTTG-CGTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAG
91280582 CGT
130 CGT
* * * *
91280585 AGTTTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTATGACTAGACAAAAGCCA
1 AGTCTATCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCA
* * * *
91280650 ACTCTTGTTCAAGCGTTGCCG-TAGGCATAAATATCGCAACCCTTATACAAATAGTTGGCGAAAG
66 ACTCTTATTCAAGCGTTG-CGTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAG
91280714 CGT
130 CGT
* * * *
91280717 AGTATATTC-CAACACTTAGGAAAGTGTTGCCCCAAAAGTGTCGTCTTAGGACTACACAACA-CC
1 AGTCTA-TCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCC
* * * * *
91280780 AACTCTTATTTAAGCGTTGCTTTAGGCATGCTTATCTCAACCCTTATACAAAGAGTTGCCGAAAG
65 AACTCTTATTCAAGCGTTGCGTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAG
91280845 CGTATGTT
130 C----G-T
* * * *
91280853 GGCCAGTCTATCGCAACACTTAGAAAAGTGTTGCCTCATAAA-TGTCGTCTTAGGACTAGAC-AA
1 ----AGTCTATCGCAACACTTAGGAAAGTGTCGCCACA-AAAGTGTCGTCTTAGGACTACACAAA
* * * *
91280916 AGCCAACTCTTATTTAAGCGTTGCTTTAGGCATGCATATCGCAACCCTTATACAAAAAGTTGCCG
61 AGCCAACTCTTATTCAAGCGTTGCGTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCG
*
91280981 AAAACGT
126 AAAGCGT
91280988 A
1 A
91280989 TATTGGCCAG
Statistics
Matches: 582, Mismatches: 65, Indels: 38
0.85 0.09 0.06
Matches are distributed among these distances:
130 15 0.03
131 360 0.62
132 84 0.14
133 2 0.00
135 2 0.00
136 2 0.00
139 4 0.01
140 110 0.19
141 3 0.01
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (132 bp):
AGTCTATCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCA
ACTCTTATTCAAGCGTTGCGTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAGC
GT
Found at i:91280978 original size:140 final size:140
Alignment explanation
Indices: 91280726--91281045 Score: 527
Period size: 140 Copynumber: 2.3 Consensus size: 140
91280716 TAGTATATTC
*
91280726 CAACACTTAGGAAAGTGTTGCCCCA-AAAGTGTCGTCTTAGGACTACACAACACCAACTCTTATT
1 CAACACTTAGAAAAGTGTTGCCCCATAAA-TGTCGTCTTAGGACTACACAACACCAACTCTTATT
* * * * *
91280790 TAAGCGTTGCTTTAGGCATGCTTATCTCAACCCTTATACAAAGAGTTGCCGAAAGCGTATGTTGG
65 TAAGCGTTGCTTTAGGCATGCATATCGCAACCCTTATACAAAAAGTTGCCGAAAACGTATATTGG
91280855 CCAGTCTATCG
130 CCAGTCTATCG
* *
91280866 CAACACTTAGAAAAGTGTTGCCTCATAAATGTCGTCTTAGGACTAGACAA-AGCCAACTCTTATT
1 CAACACTTAGAAAAGTGTTGCCCCATAAATGTCGTCTTAGGACTACACAACA-CCAACTCTTATT
91280930 TAAGCGTTGCTTTAGGCATGCATATCGCAACCCTTATACAAAAAGTTGCCGAAAACGTATATTGG
65 TAAGCGTTGCTTTAGGCATGCATATCGCAACCCTTATACAAAAAGTTGCCGAAAACGTATATTGG
91280995 CCAGTCTATCG
130 CCAGTCTATCG
*
91281006 CAACACTTAGAAAAGTGTTGCCCCATAACTGTCGTCTTAG
1 CAACACTTAGAAAAGTGTTGCCCCATAAATGTCGTCTTAG
91281046 CACTCTTTTG
Statistics
Matches: 168, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
139 1 0.01
140 164 0.98
141 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (140 bp):
CAACACTTAGAAAAGTGTTGCCCCATAAATGTCGTCTTAGGACTACACAACACCAACTCTTATTT
AAGCGTTGCTTTAGGCATGCATATCGCAACCCTTATACAAAAAGTTGCCGAAAACGTATATTGGC
CAGTCTATCG
Found at i:91285913 original size:22 final size:20
Alignment explanation
Indices: 91285875--91285924 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 20
91285865 CCCTACGATT
*
91285875 TTTACTCTTTTACCCTTGCATA
1 TTTACTATTTTACCCTT-C-TA
91285897 TTTACTATTTTACCCTTCTA
1 TTTACTATTTTACCCTTCTA
91285917 -TTACTATT
1 TTTACTATT
91285925 ATAAATAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 8 0.30
20 2 0.07
21 1 0.04
22 16 0.59
ACGTcount: A:0.20, C:0.24, G:0.02, T:0.54
Consensus pattern (20 bp):
TTTACTATTTTACCCTTCTA
Found at i:91288379 original size:41 final size:41
Alignment explanation
Indices: 91288322--91288403 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
91288312 CATTTGAATT
91288322 GCCAAATGAAGGCATGTAAAGATGCATTCATCTTTTGTACA
1 GCCAAATGAAGGCATGTAAAGATGCATTCATCTTTTGTACA
91288363 GCCAAATGAAGGCATGTAAAGATGCATTCATCTTTTGTACA
1 GCCAAATGAAGGCATGTAAAGATGCATTCATCTTTTGTACA
91288404 AGGCCATGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (41 bp):
GCCAAATGAAGGCATGTAAAGATGCATTCATCTTTTGTACA
Found at i:91295254 original size:72 final size:72
Alignment explanation
Indices: 91295137--91295275 Score: 235
Period size: 72 Copynumber: 1.9 Consensus size: 72
91295127 TTGTCTGTTT
*
91295137 AACTGAAAATATGAAACACACCCTACATTATTAAATATGTCAACTCAAATTTATTT-AGTATTTC
1 AACTGAAAATATGAAACACACCATACATTATTAAATATGTCAACTCAAATTTATTTGA-TATTTC
91295201 TATGCTTC
65 TATGCTTC
* *
91295209 AACTGAAAATATGAAGCACACCATACATTATTAAATATGTGAACTCAAATTTATTTGATATTTCT
1 AACTGAAAATATGAAACACACCATACATTATTAAATATGTCAACTCAAATTTATTTGATATTTCT
91295274 AT
66 AT
91295276 ATACTTAACC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
72 62 0.98
73 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (72 bp):
AACTGAAAATATGAAACACACCATACATTATTAAATATGTCAACTCAAATTTATTTGATATTTCT
ATGCTTC
Found at i:91296384 original size:2 final size:2
Alignment explanation
Indices: 91296377--91296420 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
91296367 CTGATTTAGA
91296377 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91296419 AT
1 AT
91296421 TGGGATTAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91298560 original size:24 final size:25
Alignment explanation
Indices: 91298522--91298568 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
91298512 TAAATTTAAA
91298522 TTATTCTATATTTAAATAATAATCC
1 TTATTCTATATTTAAATAATAATCC
*
91298547 TTATT-TATATTTAAATTATAAT
1 TTATTCTATATTTAAATAATAAT
91298569 TGTAACAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.53
Consensus pattern (25 bp):
TTATTCTATATTTAAATAATAATCC
Done.