Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 293 of 433
Found at i:91299448 original size:29 final size:29
Alignment explanation
Indices: 91299393--91299448 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
91299383 TTCGAACCTA
*
91299393 AGGGTAAAATGGTCATTTTGTCAAAGTCT
1 AGGGTAAAATGGTCATTTTGCCAAAGTCT
*
91299422 AGGG-AAAATTGGTCATTTTGCCCAAGT
1 AGGGTAAAA-TGGTCATTTTGCCAAAGT
91299449 ATAAATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.32
Consensus pattern (29 bp):
AGGGTAAAATGGTCATTTTGCCAAAGTCT
Found at i:91322370 original size:296 final size:296
Alignment explanation
Indices: 91321836--91322423 Score: 1072
Period size: 296 Copynumber: 2.0 Consensus size: 296
91321826 TGATTTTGCT
91321836 TGATTACTATGAATGGGAAGTGTATAGCATATGTGCATAATGAATGCCTTAGGACCATTCGAAGT
1 TGATTACTATGAATGGGAAGTGTATAGCATATGTGCATAATGAATGCCTTAGGACCATTCGAAGT
91321901 GGTCATGGCTATGGAATAAATGCGTGACATGGTAATAAATTGATAATGATTGAACATGAACATTT
66 GGTCATGGCTATGGAATAAATGCGTGACATGGTAATAAATTGATAATGATTGAACATGAACATTT
*
91321966 GTCGAATTAGTAGAGATTGAGTGTTAGGTAAAATGTTGTGGTTAATTGGTAAAAGTGGTCATCAA
131 GTCGAATCAGTAGAGATTGAGTGTTAGGTAAAATGTTGTGGTTAATTGGTAAAAGTGGTCATCAA
* *
91322031 TTTAACAAGGCTATTGAACGTGAATTGGAATGTCTAACTTGGTGTAACATGAGAAATTGAAAAAC
196 TATAACAAGACTATTGAACGTGAATTGGAATGTCTAACTTGGTGTAACATGAGAAATTGAAAAAC
91322096 ACATGTATGATAACATGCAAATGCTTTAATTGATAA
261 ACATGTATGATAACATGCAAATGCTTTAATTGATAA
91322132 TGATTACTATGAATGGGAAGTGTAT-GACATATGTGCATAATGAATGCCTTAGGACCATTCGAAG
1 TGATTACTATGAATGGGAAGTGTATAG-CATATGTGCATAATGAATGCCTTAGGACCATTCGAAG
* *
91322196 TGGTTATGGCTATGGAATAAATGTGTGACATGGTAATAAATTGATAATGATTGAACATGAACATT
65 TGGTCATGGCTATGGAATAAATGCGTGACATGGTAATAAATTGATAATGATTGAACATGAACATT
91322261 T-TCCGAATCAGTAGAGATTGAGTGTTAGGTAAAATGTTGTGGTTAATTGGTAAAAGTGGTCATC
130 TGT-CGAATCAGTAGAGATTGAGTGTTAGGTAAAATGTTGTGGTTAATTGGTAAAAGTGGTCATC
*
91322325 AATATGACAAGACTATTGAACGTGAATTGGAATGTCTAACTTGGTGTAACATGAGAAATTGAAAA
194 AATATAACAAGACTATTGAACGTGAATTGGAATGTCTAACTTGGTGTAACATGAGAAATTGAAAA
* *
91322390 ACACATTTGTGATAACATGCAAATGCTTTAATTG
259 ACACATGTATGATAACATGCAAATGCTTTAATTG
91322424 GGTTTTATTA
Statistics
Matches: 282, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
295 2 0.01
296 280 0.99
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.32
Consensus pattern (296 bp):
TGATTACTATGAATGGGAAGTGTATAGCATATGTGCATAATGAATGCCTTAGGACCATTCGAAGT
GGTCATGGCTATGGAATAAATGCGTGACATGGTAATAAATTGATAATGATTGAACATGAACATTT
GTCGAATCAGTAGAGATTGAGTGTTAGGTAAAATGTTGTGGTTAATTGGTAAAAGTGGTCATCAA
TATAACAAGACTATTGAACGTGAATTGGAATGTCTAACTTGGTGTAACATGAGAAATTGAAAAAC
ACATGTATGATAACATGCAAATGCTTTAATTGATAA
Found at i:91331234 original size:37 final size:37
Alignment explanation
Indices: 91331175--91331320 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
91331165 AGCTCAGACG
* *
91331175 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
91331212 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
91331249 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
91331286 TAATCTCCACACGTAGTCATCGGGTCTTATCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
91331321 ATATATTTCC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:91331574 original size:48 final size:49
Alignment explanation
Indices: 91331466--91331602 Score: 197
Period size: 50 Copynumber: 2.8 Consensus size: 49
91331456 GCACATCGCC
*
91331466 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * * *
91331516 TATATATTTCACATT-GACCATTCAGCTTTACCATATATACATTTCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
91331564 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
91331603 TGCATGTTCA
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
48 35 0.45
49 2 0.03
50 40 0.52
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:91331634 original size:47 final size:47
Alignment explanation
Indices: 91331573--91331673 Score: 130
Period size: 47 Copynumber: 2.1 Consensus size: 47
91331563 ATACATATTT
* * * *
91331573 CACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCAC
1 CACATTAGCCATTCGGCCTTACCACACATATGCATGCTCACATTCAC
* * * *
91331620 CACATTGGCCATTCGGCCTTATCACACATCTGCATGCTCACATTCAT
1 CACATTAGCCATTCGGCCTTACCACACATATGCATGCTCACATTCAC
91331667 CACATTA
1 CACATTA
91331674 AATCCTAAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
CACATTAGCCATTCGGCCTTACCACACATATGCATGCTCACATTCAC
Found at i:91336012 original size:93 final size:93
Alignment explanation
Indices: 91335905--91336075 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
91335895 GCCCATAAGT
* *
91335905 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91335970 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
91335998 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAATTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91336063 CGAGTTCGGATGC
66 CGAGTTCGGATGC
91336076 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91336091 original size:46 final size:46
Alignment explanation
Indices: 91335897--91336077 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
91335887 TGTAACCCGC
* *
91335897 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
91335943 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
91335993 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
91336036 CCATAAGTGAATTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
91336078 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:91338780 original size:94 final size:92
Alignment explanation
Indices: 91338653--91338970 Score: 334
Period size: 94 Copynumber: 3.4 Consensus size: 92
91338643 GTTATGTGAG
* ** * * *
91338653 AGCCAGTATAAGACCATGTCTGGGACATGGCATCAACATTAAGACGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC--TAAGATGAGTGCTAGTGTAAGACATG
91338718 TCTGGGACATGCATCAGCCGCATCATGAT
64 TCTGGGACATGCATCAGCCGCATCATGAT
* * * *
91338747 AGCCCGTGTAAGACCACGTCTGGGACATGGCATCGGCGTAGAGGTGAGTGCCAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TA-AGATGAGTGCTAGTGTAAGACATG
** * * * *
91338812 TCTTTGACATGCATCAACCTCGATGATGTT
64 TCTGGGACATGCATCAGCCGC-ATCATGAT
* * * **
91338842 AGCCAGTGTAAGA-CGTGTCTAGGACAT-GCATCGGCTAAGTTTCGTGCTAGTGTAAGACATGTC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAAGATGAGTGCTAGTGTAAGACATGTC
* * *
91338905 TGGGACATACATCAGCACGTATACATGAG
66 TGGGACATGCATCAGC-CGCAT-CATGAT
*
91338934 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
91338971 CTCGATTGAG
Statistics
Matches: 181, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
91 36 0.20
92 18 0.10
93 22 0.12
94 87 0.48
95 18 0.10
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (92 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAAGATGAGTGCTAGTGTAAGACATGTC
TGGGACATGCATCAGCCGCATCATGAT
Found at i:91352020 original size:2 final size:2
Alignment explanation
Indices: 91352013--91352051 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
91352003 GAGACTAGTC
91352013 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91352052 CATGTCATGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:91356017 original size:44 final size:45
Alignment explanation
Indices: 91355911--91356043 Score: 124
Period size: 46 Copynumber: 2.9 Consensus size: 45
91355901 ACAGGACAGA
* * * *
91355911 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTA-AAATATGGCATTGAAG
* * *
91355957 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGAAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGAAG
* ** * * *
91356001 ATAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAA-ATATGGCATTG
91356044 GCAGGATATT
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
44 34 0.48
45 1 0.01
46 36 0.51
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (45 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGAAG
Found at i:91363351 original size:44 final size:45
Alignment explanation
Indices: 91363256--91363370 Score: 142
Period size: 44 Copynumber: 2.6 Consensus size: 45
91363246 ACAGGACAGA
* *
91363256 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTAGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTAGAG
* * *
91363302 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTAGAG
* **
91363346 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
91363371 GTCAAAGACA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
44 34 0.57
46 26 0.43
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTAGAG
Found at i:91366186 original size:47 final size:48
Alignment explanation
Indices: 91366132--91366353 Score: 203
Period size: 47 Copynumber: 4.7 Consensus size: 48
91366122 TAAAGTGCCA
* * *
91366132 ATGCCATGTCCCAGACACGGTCTTACACTAGCTCAT-ATCTCATGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCGTGTCG
* *
91366179 ATGCCATGTCCCAGACATGGTCTTAAACT-GACT-ATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCATCTCGT-GTCG
* * * *
91366227 ATG-CATGTCCCAAACAT-GTCTTACTCTAGCAC-TCGTCTCGGTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-GTGTCG
* * * *
91366273 ATGCCATGTCCCTGACATGGTCTTACACTGGCTC-TCATAAT-GTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCAT-CTCGTGTC-G
*
91366321 ATG-CATGTCCTAGACAT-GTCTTACACTAGCTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
91366354 CAATAACCCA
Statistics
Matches: 142, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
46 38 0.27
47 79 0.56
48 24 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCGTGTCG
Found at i:91366297 original size:94 final size:94
Alignment explanation
Indices: 91366178--91366350 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 94
91366168 ATCTCATGTT
*
91366178 GATGCCATGTCCCAGACATGGTCTTAAACTGACTATCAT-CTCGTAGCCGATGCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTAAACTGACTATCATAAT-GTAGCCGATGCATGTCCCAAAC
*
91366242 ATGTCTTACTCTAGCACTCGTCTCGGTGTC
65 ATGTCTTACACTAGCACTCGTCTCGGTGTC
* * * * * * * *
91366272 GATGCCATGTCCCTGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCTAGACA
1 GATGCCATGTCCCAGACATGGTCTTAAACTGACTATCATAATGTAGCCGATGCATGTCCCAAACA
91366337 TGTCTTACACTAGC
66 TGTCTTACACTAGC
91366351 TCACAATAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
94 67 0.99
95 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTAAACTGACTATCATAATGTAGCCGATGCATGTCCCAAACA
TGTCTTACACTAGCACTCGTCTCGGTGTC
Found at i:91370106 original size:29 final size:29
Alignment explanation
Indices: 91370072--91370203 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
91370062 TACTCGATTT
** * *
91370072 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
91370101 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
91370130 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
91370159 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
91370188 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
91370204 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:91377449 original size:29 final size:29
Alignment explanation
Indices: 91377416--91377547 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
91377406 TACTCGATTT
** * *
91377416 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
91377445 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
91377474 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
91377503 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
91377532 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
91377548 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:91379657 original size:93 final size:93
Alignment explanation
Indices: 91379545--91379716 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91379535 GCCCATAAGT
* *
91379545 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91379610 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
91379638 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91379703 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
91379717 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91379712 original size:46 final size:46
Alignment explanation
Indices: 91379537--91379712 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
91379527 TGTAACCCGC
* * *
91379537 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91379583 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
91379633 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
91379676 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91379713 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91382110 original size:29 final size:29
Alignment explanation
Indices: 91382071--91382158 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
91382061 CAAAGATAAC
*
91382071 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
91382100 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
91382129 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
91382159 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:91382129 original size:15 final size:15
Alignment explanation
Indices: 91382071--91382149 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
91382061 CAAAGATAAC
*
91382071 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
91382085 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
91382100 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
91382114 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
91382129 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
91382144 AAGAAA
1 AAGAAA
91382150 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:91382158 original size:15 final size:15
Alignment explanation
Indices: 91382082--91382158 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
91382072 AGAAAACCGA
91382082 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
91382097 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
91382111 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
91382125 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
91382141 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
91382156 ATA
1 ATA
91382159 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:91385219 original size:93 final size:93
Alignment explanation
Indices: 91385107--91385277 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
91385097 GCCCATAAGT
* *
91385107 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91385172 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
91385200 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91385265 CGAGTTCGGATGC
66 CGAGTTCGGATGC
91385278 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:91385274 original size:46 final size:46
Alignment explanation
Indices: 91385099--91385274 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
91385089 TGTAACCCGC
* * *
91385099 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91385145 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
91385191 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
91385238 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91385275 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.62
47 33 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91388056 original size:11 final size:11
Alignment explanation
Indices: 91388025--91388058 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
91388015 GGTGAGATTA
*
91388025 GATACTGTAAC
1 GATACTGTAGC
91388036 GATACTGTAGC
1 GATACTGTAGC
91388047 GATACTGTAGC
1 GATACTGTAGC
91388058 G
1 G
91388059 TGAGACAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (11 bp):
GATACTGTAGC
Found at i:91394502 original size:21 final size:22
Alignment explanation
Indices: 91394477--91394527 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 22
91394467 ACGGCCTCCA
*
91394477 ACACGGGCATGTCCC-AGGGTC
1 ACACGGGCATGTCCCTAGGATC
*
91394498 ACACGGGCATGTCCCTTGGATC
1 ACACGGGCATGTCCCTAGGATC
91394520 ACACGGGC
1 ACACGGGC
91394528 GTGTGAGCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (22 bp):
ACACGGGCATGTCCCTAGGATC
Found at i:91397714 original size:41 final size:42
Alignment explanation
Indices: 91397638--91397750 Score: 160
Period size: 40 Copynumber: 2.7 Consensus size: 42
91397628 ATACTCAAAT
* *
91397638 TCTCGCACACTAAGTGCCAATACATAGCCAAAGCTAT-TTTAA
1 TCTCGCACACTAAGTGCC-ATACATAGCCGAAGCTATCTTGAA
91397680 TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAA
1 TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAA
* *
91397722 --TCGCACATTAAGTGTCATACATAGCCGAA
1 TCTCGCACACTAAGTGCCATACATAGCCGAA
91397751 TTATCGTCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
40 27 0.41
41 17 0.26
42 22 0.33
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAA
Found at i:91398222 original size:19 final size:20
Alignment explanation
Indices: 91398188--91398236 Score: 82
Period size: 19 Copynumber: 2.5 Consensus size: 20
91398178 TAAAAATCAC
91398188 TTAACAAAACTTGTATAGCTA
1 TTAAC-AAACTTGTATAGCTA
91398209 TTAACAAA-TTGTATAGCTA
1 TTAACAAACTTGTATAGCTA
91398228 TTAACAAAC
1 TTAACAAAC
91398237 ATTCATAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 19 0.70
20 3 0.11
21 5 0.19
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (20 bp):
TTAACAAACTTGTATAGCTA
Found at i:91398411 original size:20 final size:19
Alignment explanation
Indices: 91398368--91398407 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
91398358 AAAATGTAGG
**
91398368 AATCATTAAAAACGGGACA
1 AATCATTAAAAACAAGACA
91398387 AATCATTAAAAACAAGACA
1 AATCATTAAAAACAAGACA
91398406 AA
1 AA
91398408 ATCACACTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.60, C:0.15, G:0.10, T:0.15
Consensus pattern (19 bp):
AATCATTAAAAACAAGACA
Found at i:91405861 original size:46 final size:45
Alignment explanation
Indices: 91405757--91405923 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 45
91405747 AAGTTGACGC
* * * * * *
91405757 CATGTCCCAAATAGGTCTTACACTAGCTAGTATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-CT-CATC-CAATGCCGATG
*
91405805 CATGTCCCAGACATGTCTTACACTAGCTCTCATCCCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCAT-CCAATGCCGATG
* * *
91405851 CATGTCCCAGACATGTATTACACTGGCCCTCAT--AATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCCAA--T-GCCGATG
91405897 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
91405924 ACACATATCA
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.02
45 1 0.01
46 72 0.71
47 2 0.02
48 25 0.25
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCCAATGCCGATG
Found at i:91406610 original size:20 final size:18
Alignment explanation
Indices: 91406573--91406615 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
91406563 CTATAGTAAC
91406573 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
91406590 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
91406610 TTACAA
1 TCACAA
91406616 ACTTTACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:91408546 original size:79 final size:79
Alignment explanation
Indices: 91408402--91408620 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
91408392 AAATCACATA
* * * * *
91408402 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
91408466 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
91408481 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
91408544 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* * *
91408560 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
91408621 TATCATTCGA
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.51
80 45 0.38
81 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:91408549 original size:39 final size:41
Alignment explanation
Indices: 91408416--91408620 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 41
91408406 CGGAATTTAA
* *
91408416 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91408456 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91408496 CCGG-ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
91408535 CCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
91408575 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
91408616 CCGGA
1 CCGGA
91408621 TATCATTCGA
Statistics
Matches: 143, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.24
40 81 0.57
41 23 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:91414251 original size:28 final size:28
Alignment explanation
Indices: 91414218--91414283 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
91414208 TAGATCACGG
91414218 AATTACCCCTAAAGAGCAAAATTACCGA
1 AATTACCCCTAAAGAGCAAAATTACCGA
*
91414246 AATTACCCCTAAAGAGCATAATTACCGA
1 AATTACCCCTAAAGAGCAAAATTACCGA
*
91414274 TA-TACCCCTA
1 AATTACCCCTA
91414284 GGGTTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 8 0.22
28 28 0.78
ACGTcount: A:0.42, C:0.27, G:0.09, T:0.21
Consensus pattern (28 bp):
AATTACCCCTAAAGAGCAAAATTACCGA
Found at i:91421966 original size:79 final size:79
Alignment explanation
Indices: 91421823--91422040 Score: 255
Period size: 79 Copynumber: 2.7 Consensus size: 79
91421813 AAATCACATA
* * * * *
91421823 CTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGT
1 CTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
91421887 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* *
91421902 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TAG
1 CTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
91421965 TAACTCGCACAAATGC
64 TAACTCGCACAAATGC
* * *
91421981 CTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
91422041 TATCATTCGA
Statistics
Matches: 119, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 60 0.50
80 45 0.38
81 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGTA
ACTCGCACAAATGC
Found at i:91421969 original size:39 final size:41
Alignment explanation
Indices: 91421836--91422040 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 41
91421826 CGGAATTTAA
* *
91421836 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91421876 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91421916 CCGG-ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
91421955 CCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
91421995 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
91422036 CCGGA
1 CCGGA
91422041 TATCATTCGA
Statistics
Matches: 143, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.24
40 81 0.57
41 23 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:91424175 original size:30 final size:30
Alignment explanation
Indices: 91424139--91424239 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
91424129 GACAAGATTG
* * *
91424139 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
91424169 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
91424197 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
91424226 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91424240 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:91424251 original size:29 final size:28
Alignment explanation
Indices: 91424168--91424243 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
91424158 AAAATTGTAC
* *
91424168 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
91424196 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
91424225 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
91424244 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:91432706 original size:30 final size:30
Alignment explanation
Indices: 91432670--91432770 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
91432660 GACAAGATTG
* * *
91432670 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
91432700 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
91432728 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
91432757 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91432771 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:91432782 original size:29 final size:28
Alignment explanation
Indices: 91432699--91432774 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
91432689 AAAATTGTAC
* *
91432699 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
91432727 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
91432756 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
91432775 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:91436700 original size:648 final size:648
Alignment explanation
Indices: 91435465--91436760 Score: 2592
Period size: 648 Copynumber: 2.0 Consensus size: 648
91435455 CGAGAATCTC
91435465 TGGAGGTAGGGGTGGTAATCAGAGAGGAGCCTCTAATACGGCTGTCCGATCCGAGACCCGTGCTC
1 TGGAGGTAGGGGTGGTAATCAGAGAGGAGCCTCTAATACGGCTGTCCGATCCGAGACCCGTGCTC
91435530 CTGCTAGAGCATATGCCATCCGCGCACGAGAGGAGGCATCCTCCCCTGACGTTATCACTGGTACT
66 CTGCTAGAGCATATGCCATCCGCGCACGAGAGGAGGCATCCTCCCCTGACGTTATCACTGGTACT
91435595 TTTACTCTCTTTGATACTATTGTGATTGCATTGATTGACCCCGGCTCTACTCACTCATATGTATG
131 TTTACTCTCTTTGATACTATTGTGATTGCATTGATTGACCCCGGCTCTACTCACTCATATGTATG
91435660 TGAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTTCGTAATTCGAGTGTCAA
196 TGAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTTCGTAATTCGAGTGTCAA
91435725 ACCCTTTGGGTCAATACGTGCTCGTTGATAAAGTGTGCAAGAGATGCCCCCTAATAATTCGAGAA
261 ACCCTTTGGGTCAATACGTGCTCGTTGATAAAGTGTGCAAGAGATGCCCCCTAATAATTCGAGAA
91435790 TCCTGTTTTCCGGCCGATCTGATGCTTCTACCATTTCATGAATTCGATGTTATTCTTGGTATGGA
326 TCCTGTTTTCCGGCCGATCTGATGCTTCTACCATTTCATGAATTCGATGTTATTCTTGGTATGGA
91435855 TTGGCTGACCGTACATGATGCAGTGGTGGACTGCAAAAGGAAAACCATTGATTTGAGGAGTGCAA
391 TTGGCTGACCGTACATGATGCAGTGGTGGACTGCAAAAGGAAAACCATTGATTTGAGGAGTGCAA
91435920 ATAATGAGGTAGTCCGAGTCGAGTCTACTGATTTAAAAGGAGCGCCAGCGATAATATCTTCTATG
456 ATAATGAGGTAGTCCGAGTCGAGTCTACTGATTTAAAAGGAGCGCCAGCGATAATATCTTCTATG
91435985 ACCGCTCGGAGGTATGTGAAAAAGGGGTGTGAAACATACCTTGCGTATGTGTTTGGAAGTAAAGA
521 ACCGCTCGGAGGTATGTGAAAAAGGGGTGTGAAACATACCTTGCGTATGTGTTTGGAAGTAAAGA
91436050 GACGGAAAGGAAACTCGAATCGGTACCAGTGGTTTGTGAGTATTCAGATGTTTTTCCTGAGGA
586 GACGGAAAGGAAACTCGAATCGGTACCAGTGGTTTGTGAGTATTCAGATGTTTTTCCTGAGGA
91436113 TGGAGGTAGGGGTGGTAATCAGAGAGGAGCCTCTAATACGGCTGTCCGATCCGAGACCCGTGCTC
1 TGGAGGTAGGGGTGGTAATCAGAGAGGAGCCTCTAATACGGCTGTCCGATCCGAGACCCGTGCTC
91436178 CTGCTAGAGCATATGCCATCCGCGCACGAGAGGAGGCATCCTCCCCTGACGTTATCACTGGTACT
66 CTGCTAGAGCATATGCCATCCGCGCACGAGAGGAGGCATCCTCCCCTGACGTTATCACTGGTACT
91436243 TTTACTCTCTTTGATACTATTGTGATTGCATTGATTGACCCCGGCTCTACTCACTCATATGTATG
131 TTTACTCTCTTTGATACTATTGTGATTGCATTGATTGACCCCGGCTCTACTCACTCATATGTATG
91436308 TGAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTTCGTAATTCGAGTGTCAA
196 TGAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTTCGTAATTCGAGTGTCAA
91436373 ACCCTTTGGGTCAATACGTGCTCGTTGATAAAGTGTGCAAGAGATGCCCCCTAATAATTCGAGAA
261 ACCCTTTGGGTCAATACGTGCTCGTTGATAAAGTGTGCAAGAGATGCCCCCTAATAATTCGAGAA
91436438 TCCTGTTTTCCGGCCGATCTGATGCTTCTACCATTTCATGAATTCGATGTTATTCTTGGTATGGA
326 TCCTGTTTTCCGGCCGATCTGATGCTTCTACCATTTCATGAATTCGATGTTATTCTTGGTATGGA
91436503 TTGGCTGACCGTACATGATGCAGTGGTGGACTGCAAAAGGAAAACCATTGATTTGAGGAGTGCAA
391 TTGGCTGACCGTACATGATGCAGTGGTGGACTGCAAAAGGAAAACCATTGATTTGAGGAGTGCAA
91436568 ATAATGAGGTAGTCCGAGTCGAGTCTACTGATTTAAAAGGAGCGCCAGCGATAATATCTTCTATG
456 ATAATGAGGTAGTCCGAGTCGAGTCTACTGATTTAAAAGGAGCGCCAGCGATAATATCTTCTATG
91436633 ACCGCTCGGAGGTATGTGAAAAAGGGGTGTGAAACATACCTTGCGTATGTGTTTGGAAGTAAAGA
521 ACCGCTCGGAGGTATGTGAAAAAGGGGTGTGAAACATACCTTGCGTATGTGTTTGGAAGTAAAGA
91436698 GACGGAAAGGAAACTCGAATCGGTACCAGTGGTTTGTGAGTATTCAGATGTTTTTCCTGAGGA
586 GACGGAAAGGAAACTCGAATCGGTACCAGTGGTTTGTGAGTATTCAGATGTTTTTCCTGAGGA
91436761 GTTACCGGGA
Statistics
Matches: 648, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
648 648 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (648 bp):
TGGAGGTAGGGGTGGTAATCAGAGAGGAGCCTCTAATACGGCTGTCCGATCCGAGACCCGTGCTC
CTGCTAGAGCATATGCCATCCGCGCACGAGAGGAGGCATCCTCCCCTGACGTTATCACTGGTACT
TTTACTCTCTTTGATACTATTGTGATTGCATTGATTGACCCCGGCTCTACTCACTCATATGTATG
TGAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTTCGTAATTCGAGTGTCAA
ACCCTTTGGGTCAATACGTGCTCGTTGATAAAGTGTGCAAGAGATGCCCCCTAATAATTCGAGAA
TCCTGTTTTCCGGCCGATCTGATGCTTCTACCATTTCATGAATTCGATGTTATTCTTGGTATGGA
TTGGCTGACCGTACATGATGCAGTGGTGGACTGCAAAAGGAAAACCATTGATTTGAGGAGTGCAA
ATAATGAGGTAGTCCGAGTCGAGTCTACTGATTTAAAAGGAGCGCCAGCGATAATATCTTCTATG
ACCGCTCGGAGGTATGTGAAAAAGGGGTGTGAAACATACCTTGCGTATGTGTTTGGAAGTAAAGA
GACGGAAAGGAAACTCGAATCGGTACCAGTGGTTTGTGAGTATTCAGATGTTTTTCCTGAGGA
Found at i:91441245 original size:30 final size:30
Alignment explanation
Indices: 91441209--91441309 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
91441199 GACAAGATTG
* * *
91441209 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
91441239 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
91441267 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
91441296 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91441310 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:91441321 original size:29 final size:28
Alignment explanation
Indices: 91441238--91441313 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
91441228 AAAATTGTAC
* *
91441238 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
91441266 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
91441295 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
91441314 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:91449131 original size:30 final size:30
Alignment explanation
Indices: 91449095--91449195 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
91449085 GACAAGATTG
* * *
91449095 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
91449125 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
91449153 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
91449182 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91449196 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:91449207 original size:29 final size:28
Alignment explanation
Indices: 91449124--91449199 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
91449114 AAAATTGTAC
* *
91449124 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
91449152 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
91449181 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
91449200 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:91459500 original size:23 final size:24
Alignment explanation
Indices: 91459426--91459511 Score: 156
Period size: 24 Copynumber: 3.6 Consensus size: 24
91459416 AATCTCAAAT
91459426 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
91459450 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
91459474 GCACTATGTGTGCGA-TTACTATG
1 GCACTATGTGTGCGATTTACTATG
91459497 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
91459512 ACATAATAAG
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
23 22 0.37
24 38 0.63
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:91459505 original size:47 final size:48
Alignment explanation
Indices: 91459426--91459533 Score: 166
Period size: 47 Copynumber: 2.3 Consensus size: 48
91459416 AATCTCAAAT
** *
91459426 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
91459474 GCACTATGTGTGCGA-TTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
91459521 GCACTATGTGTGC
1 GCACTATGTGTGC
91459534 AACGTTTGGT
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
47 36 0.64
48 20 0.36
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:91459529 original size:24 final size:23
Alignment explanation
Indices: 91459426--91459533 Score: 85
Period size: 24 Copynumber: 4.6 Consensus size: 23
91459416 AATCTCAAAT
** * *
91459426 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGAACTAATA-A
** *
91459450 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGAACTAATA-A
*
91459474 GCACTATGTGTGCGATTACT-AT-G
1 GCACTATGTGTGCGA--ACTAATAA
91459497 GCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGAAC-TAATAA
91459521 GCACTATGTGTGC
1 GCACTATGTGTGC
91459534 AACGTTTGGT
Statistics
Matches: 73, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.03
22 1 0.01
23 17 0.23
24 51 0.70
25 1 0.01
26 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (23 bp):
GCACTATGTGTGCGAACTAATAA
Found at i:91471371 original size:21 final size:21
Alignment explanation
Indices: 91471345--91471393 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
91471335 GATATTCCAT
91471345 CGAGATTTCCTAGAAACTCAA
1 CGAGATTTCCTAGAAACTCAA
91471366 CGAGATTTCCTAGAAACTCAA
1 CGAGATTTCCTAGAAACTCAA
91471387 CGAGATT
1 CGAGATT
91471394 AATGTGACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.24
Consensus pattern (21 bp):
CGAGATTTCCTAGAAACTCAA
Found at i:91473256 original size:37 final size:37
Alignment explanation
Indices: 91473193--91473297 Score: 165
Period size: 37 Copynumber: 2.8 Consensus size: 37
91473183 AGCTCAGATG
* * * *
91473193 AAATCTCCACACGAAGTTATCAGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
91473230 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
91473267 TAATCTCCACACGTAGTCATCGGGTCTTACC
1 AAATCTCCACACGTAGTCATCGGGTCTTACC
91473298 TGGAATATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:91473574 original size:50 final size:49
Alignment explanation
Indices: 91473448--91474083 Score: 1016
Period size: 48 Copynumber: 12.9 Consensus size: 49
91473438 ACACATCGCC
*
91473448 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTA
*
91473496 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TA
* *
91473546 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCT-TA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCTA
91473594 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC---TA
* *
91473646 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC---TA
*
91473698 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTA
91473746 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTA
91473794 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TA
* *
91473844 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TA
* *
91473894 TATATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TA
*
91473944 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTA
91473992 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTA
91474040 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
91474084 ATTTATCTTA
Statistics
Matches: 563, Mismatches: 15, Indels: 20
0.94 0.03 0.03
Matches are distributed among these distances:
48 278 0.49
49 2 0.00
50 185 0.33
52 98 0.17
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTA
Found at i:91473601 original size:98 final size:98
Alignment explanation
Indices: 91473451--91474083 Score: 1051
Period size: 100 Copynumber: 6.4 Consensus size: 98
91473441 CATCGCCTAC
* *
91473451 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
91473516 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
91473549 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTTATACATATTTCACATTAGCC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
91473613 ATTCGGCTTTACCACATATACATATCTCATATATAT
65 ATTCGGCTTTACCACATATACATATCTC--ATATAT
* *
91473649 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACATTA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACATTA
*
91473714 GCCATTCGGCTTTACCACATATACATATCTC--ATAC
62 GCCATTCGGCTTTACCACATATACATATCTCATATAT
91473749 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
91473814 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
91473847 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
*
91473912 CATTCAGCTTTACCACATATACATATCTCATATAT
64 CATTCGGCTTTACCACATATACATATCTCATATAT
91473947 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
91474012 TTCGGCTTTACCACATATACATATCTC--ATAC
66 TTCGGCTTTACCACATATACATATCTCATATAT
91474043 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
91474084 ATTTATCTTA
Statistics
Matches: 504, Mismatches: 19, Indels: 26
0.92 0.03 0.05
Matches are distributed among these distances:
96 91 0.18
97 1 0.00
98 178 0.35
100 187 0.37
104 47 0.09
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:91477030 original size:25 final size:25
Alignment explanation
Indices: 91476996--91477049 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
91476986 CGGTTAAAGA
91476996 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
91477021 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
91477046 ATTC
1 ATTC
91477050 ATTATTACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:91477302 original size:40 final size:40
Alignment explanation
Indices: 91477223--91477491 Score: 405
Period size: 40 Copynumber: 6.8 Consensus size: 40
91477213 TCACCGGCAT
* * * *
91477223 GAATGCCCTTCAGGACTTAGCCCGGATGTAACACCAGCAC
1 GAATGCTCTTCGGGACTTAGCCCGGATATAACACTAGCAC
* * *
91477263 GAACGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC
1 GAATGCTCTTCGGGACTTAGCCCGGATATAACACTAGCAC
*
91477303 GAATGCTCTTCGGGACTTAGCCCGGATATAACATTAGCAC
1 GAATGCTCTTCGGGACTTAGCCCGGATATAACACTAGCAC
* * *
91477343 GAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGTAC
1 GAATGCTCTTCGGGACTTAGCCCGGATATAACACTAGCAC
* *
91477383 GAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCAC
1 GAATGCTCTTCGGGACTTAGCCCGGATATAACACTAGCAC
*
91477423 GAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCAC
1 GAATGCTCTTCGGGACTTAGCCCGGATATAACACTAGCAC
91477463 GAATGCTCTT-GGGACTTAGCCCGGATATA
1 GAATGCTCTTCGGGACTTAGCCCGGATATA
91477492 TATAACTCTC
Statistics
Matches: 206, Mismatches: 23, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
39 19 0.09
40 187 0.91
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
GAATGCTCTTCGGGACTTAGCCCGGATATAACACTAGCAC
Found at i:91477343 original size:80 final size:80
Alignment explanation
Indices: 91477223--91477491 Score: 450
Period size: 80 Copynumber: 3.4 Consensus size: 80
91477213 TCACCGGCAT
* * * *
91477223 GAATGCCCTTCAGGACTTAGCCCGGATGTAACACCAGCACGAACGCTCTTCGGGACTTAGCCCGG
1 GAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGG
91477288 ATACATCACTAGCAC
66 ATACATCACTAGCAC
**
91477303 GAATGCTCTTCGGGACTTAGCCCGGATATAACATTAGCACGAATGCTCTTCGGGACTTAGCCCGG
1 GAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGG
*
91477368 ATACATCACTAGTAC
66 ATACATCACTAGCAC
*
91477383 GAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGG
1 GAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGG
*
91477448 ATATATCACTAGCAC
66 ATACATCACTAGCAC
91477463 GAATGCTCTT-GGGACTTAGCCCGGATATA
1 GAATGCTCTTCGGGACTTAGCCCGGATATA
91477492 TATAACTCTC
Statistics
Matches: 176, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
79 18 0.10
80 158 0.90
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
GAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGG
ATACATCACTAGCAC
Found at i:91478812 original size:37 final size:37
Alignment explanation
Indices: 91478753--91478892 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
91478743 AGCTTAGATG
* * *
91478753 AAATCTTCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
91478790 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
91478827 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
91478864 TAATCTCCACACGTAGTCATCGGGTCTTA
1 AAATCTCCACACGTAGTCATCGGGTCTTA
91478893 TCTGGAATAT
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:91479099 original size:48 final size:49
Alignment explanation
Indices: 91479048--91479780 Score: 1147
Period size: 50 Copynumber: 14.8 Consensus size: 49
91479038 CATCGCCTAC
* * *
91479048 ATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTC-ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATAT
*
91479096 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATAT
* *
91479146 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC-ATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAATAT
* * *
91479194 ATATTTCATATTAGCCATTTGGCTTTACCACATATACCTATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-ATAT
*
91479246 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-ATAT
*
91479298 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATAT
91479346 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATAT
91479396 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATAT
* *
91479446 ATATTTCACATTAACCGTTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATAT
91479496 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATAT
*
91479546 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATAT
91479594 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATAT
*
91479644 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATAT
*
91479692 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATAT
*
91479740 ATATTTCACATTAGCCATTCGGCTTTAGCACATATACATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
91479781 ATTTATCTTA
Statistics
Matches: 648, Mismatches: 25, Indels: 24
0.93 0.04 0.03
Matches are distributed among these distances:
48 269 0.42
49 2 0.00
50 283 0.44
52 94 0.15
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (49 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATAT
Found at i:91479150 original size:98 final size:98
Alignment explanation
Indices: 91479048--91479780 Score: 1188
Period size: 98 Copynumber: 7.4 Consensus size: 98
91479038 CATCGCCTAC
* * *
91479048 ATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
91479113 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
91479146 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCATATTAGCC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
* *
91479210 ATTTGGCTTTACCACATATACCTATCTCATATATAT
65 ATTCGGCTTTACCACATATACATATCTC--ATATAT
* *
91479246 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACATTA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACATTA
*
91479311 GCCATTCGGCTTTACCACATATACATATCTC--ATAC
62 GCCATTCGGCTTTACCACATATACATATCTCATATAT
*
91479346 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
91479411 CATTCGGCTTTACCACATATACATATCTCATATAT
64 CATTCGGCTTTACCACATATACATATCTCATATAT
* * *
91479446 ATATTTCACATTAACCGTTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
91479511 CATTCGGCTTTACCACATATACATATCTCATATAT
64 CATTCGGCTTTACCACATATACATATCTCATATAT
91479546 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
91479611 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
91479644 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
91479709 TTCGGCTTTACCACATATACATATCTC--ATAC
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
91479740 ATATTTCACATTAGCCATTCGGCTTTAGCACATATACATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
91479781 ATTTATCTTA
Statistics
Matches: 602, Mismatches: 23, Indels: 22
0.93 0.04 0.03
Matches are distributed among these distances:
96 43 0.07
97 1 0.00
98 278 0.46
100 236 0.39
104 44 0.07
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:91481232 original size:2 final size:2
Alignment explanation
Indices: 91481225--91481255 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
91481215 AGCATACATT
91481225 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91481256 TAATGACTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91485541 original size:9 final size:9
Alignment explanation
Indices: 91485527--91485554 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
91485517 ATAGCTAGGG
91485527 TTTTCAAGC
1 TTTTCAAGC
91485536 TTTTCAAGC
1 TTTTCAAGC
91485545 TTTTCAAGC
1 TTTTCAAGC
91485554 T
1 T
91485555 CATTAGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.46
Consensus pattern (9 bp):
TTTTCAAGC
Found at i:91487802 original size:42 final size:42
Alignment explanation
Indices: 91487736--91487855 Score: 156
Period size: 40 Copynumber: 2.9 Consensus size: 42
91487726 ATGTCGAATA
*
91487736 CTCGAATTCTCGCACACTAAGTGCCACTACATAGCTGGAGCTAT
1 CTCGAA-TCTCGCACACTAAGTGCCA-TACATAGCTGAAGCTAT
** * *
91487780 -TTTAATCTCGCAAACTAAGTGCCATACATAGCCGAAGCTAT
1 CTCGAATCTCGCACACTAAGTGCCATACATAGCTGAAGCTAT
91487821 CTCGAA--TCGCACACTAAGTGCCATACATAGCTGAA
1 CTCGAATCTCGCACACTAAGTGCCATACATAGCTGAA
91487856 TTGTAGTCAT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
40 27 0.41
41 15 0.23
42 21 0.32
43 3 0.05
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
CTCGAATCTCGCACACTAAGTGCCATACATAGCTGAAGCTAT
Found at i:91494309 original size:46 final size:46
Alignment explanation
Indices: 91494146--91494318 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
91494136 TGGTTGGCAT
*
91494146 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
91494190 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
91494235 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
91494283 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91494319 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:91497292 original size:15 final size:15
Alignment explanation
Indices: 91497272--91497340 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
91497262 GTATCTTGGG
91497272 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
91497287 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
91497302 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
91497317 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
91497332 TTTCTTTAT
1 TTTCTTTAT
91497341 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:91497341 original size:30 final size:30
Alignment explanation
Indices: 91497263--91497350 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
91497253 CATAGTATCG
* * * *
91497263 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
91497293 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
91497323 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
91497351 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:91499788 original size:38 final size:38
Alignment explanation
Indices: 91499737--91499947 Score: 188
Period size: 38 Copynumber: 4.9 Consensus size: 38
91499727 GTTGAGCATC
91499737 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
91499775 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGATG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCAC-T-T--ATG-GATG
* *
91499818 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATC
1 --CGAACTCGTTGAGTTGAGTCCGAGTTC---A-CT-T-A-T-GG-ATG
91499867 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
91499905 CGAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CG-A------A-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91499948 GCGGGTTACA
Statistics
Matches: 145, Mismatches: 6, Indels: 36
0.78 0.03 0.19
Matches are distributed among these distances:
38 33 0.23
39 4 0.03
40 2 0.01
41 1 0.01
42 4 0.03
43 5 0.03
44 1 0.01
45 28 0.19
46 31 0.21
47 28 0.19
48 5 0.03
49 3 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (38 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
Found at i:91499938 original size:46 final size:46
Alignment explanation
Indices: 91499775--91499947 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
91499765 CTTATGGATG
* *
91499775 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
* * *
91499820 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--C
91499867 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
*
91499913 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91499948 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
42 5 0.05
44 2 0.02
45 28 0.26
46 35 0.32
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
Found at i:91502502 original size:20 final size:20
Alignment explanation
Indices: 91502473--91502517 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
91502463 AGCACATGTA
* *
91502473 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
91502493 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
91502513 TTCAT
1 TTCAT
91502518 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:91506920 original size:15 final size:16
Alignment explanation
Indices: 91506900--91506932 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
91506890 CTGGGATATC
91506900 AAAACA-AGAATTAAG
1 AAAACACAGAATTAAG
*
91506915 AAAACACATAATTAAG
1 AAAACACAGAATTAAG
91506931 AA
1 AA
91506933 CAAGTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.09, G:0.09, T:0.15
Consensus pattern (16 bp):
AAAACACAGAATTAAG
Found at i:91507126 original size:39 final size:39
Alignment explanation
Indices: 91507072--91507150 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
91507062 AAAACATAAA
91507072 TAAAACCCAAAACTCCTGAAGGGAAGTTGAGGGGAGATC
1 TAAAACCCAAAACTCCTGAAGGGAAGTTGAGGGGAGATC
91507111 TAAAACCCAAAACTCCTGAAGGGAAGTTGAGGGGAGATC
1 TAAAACCCAAAACTCCTGAAGGGAAGTTGAGGGGAGATC
91507150 T
1 T
91507151 TCAGTCTTGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.38, C:0.18, G:0.28, T:0.16
Consensus pattern (39 bp):
TAAAACCCAAAACTCCTGAAGGGAAGTTGAGGGGAGATC
Found at i:91511562 original size:40 final size:40
Alignment explanation
Indices: 91511472--91511624 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
91511462 GGATATAGCG
* * * * ***
91511472 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * * *
91511512 GCTCGTACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
91511552 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
91511592 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
91511625 CATCATTCGA
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 3 0.03
40 76 0.84
41 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:91519190 original size:17 final size:18
Alignment explanation
Indices: 91519168--91519202 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
91519158 AGCCAAGTTA
91519168 GGTGTGTGGG-CCACACG
1 GGTGTGTGGGCCCACACG
91519185 GGTGTGTGGGCCCACACG
1 GGTGTGTGGGCCCACACG
91519203 AGCATGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.11, C:0.26, G:0.46, T:0.17
Consensus pattern (18 bp):
GGTGTGTGGGCCCACACG
Found at i:91527602 original size:24 final size:24
Alignment explanation
Indices: 91527558--91527603 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
91527548 TATTGGCCAA
* *
91527558 GTTTCAAAAATAGAGAGATTACCG
1 GTTTCAAAAATACAGAAATTACCG
91527582 GTTTCAAAAATATCA-AAATTAC
1 GTTTCAAAAATA-CAGAAATTAC
91527604 TAAAAATGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (24 bp):
GTTTCAAAAATACAGAAATTACCG
Found at i:91539420 original size:20 final size:20
Alignment explanation
Indices: 91539395--91539432 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
91539385 GTAACATATA
91539395 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
91539415 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
91539433 TACTTCCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:91543590 original size:48 final size:47
Alignment explanation
Indices: 91543487--91543848 Score: 222
Period size: 48 Copynumber: 7.7 Consensus size: 47
91543477 TTGCCACTGC
* * * *
91543487 CATGTCCCAGACATGGTCTTACGCTGGCTATC-TTTATCGAGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATGTATC-AGGCTGATG
* *
91543535 CCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATACATGCTGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTCATGTAT-CAGGCTGATG
* * ** * *
91543584 CATGTCCCAGACATGTCTTACACTAGCAC-GA-AAAT-AAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATGTATCAGGCTGATG
* * ** * *
91543628 CATGTCCCAGACACGTCTTACACTGGCTAACAT-CATCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATGTATC-AGGCTGATG
* * * ** * * *
91543675 CATGTCTCAGACATGTCTTACACTGGCACTCACCT-TTACGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATGTATCAGGCTGATG
* ** *
91543721 CCATGTCCCAGACGTGATCTTACACGGGCTATCATG-ATGC-GGCTGATG
1 -CATGTCCCAGACATG-TCTTACACTAGCTCTCATGTAT-CAGGCTGATG
* * * * * *
91543769 CATGTCCCAAACACGTCTTACACTAGC-C-CTTGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATGTATC-AGGCTGATG
*
91543815 CCATGTCCCAGACATGGTCTTATACTAGCTCTCA
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCA
91543849 CATAACCCCA
Statistics
Matches: 241, Mismatches: 54, Indels: 35
0.73 0.16 0.11
Matches are distributed among these distances:
44 36 0.15
45 4 0.02
46 24 0.10
47 73 0.30
48 75 0.31
49 27 0.11
50 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATGTATCAGGCTGATG
Found at i:91543742 original size:139 final size:140
Alignment explanation
Indices: 91543487--91543745 Score: 335
Period size: 139 Copynumber: 1.9 Consensus size: 140
91543477 TTGCCACTGC
* * * * * *
91543487 CATGTCCCAGACATGGTCTTACGCTGGCTATCTTTATCGAGGCTGATGCCATGTCCCAGACATGT
1 CATGTCCCAGACATCGTCTTACACTGGCTAACATCATCGAGGCCGATGCCATGTCCCAGACATGT
* *** *
91543552 CTTACACTAGCTCTCGTGTATACATGCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAAA
66 CTTACACTAGCACTCACCTATACA-GCTAATGCATGTCCCAGACATGTCTTACACTAGCACGAAA
91543617 ATAAGCCGATG
130 ATAAGCCGATG
*
91543628 CATGTCCCAGACA-CGTCTTACACTGGCTAACATCATCGAGGCCGATG-CATGTCTCAGACATGT
1 CATGTCCCAGACATCGTCTTACACTGGCTAACATCATCGAGGCCGATGCCATGTCCCAGACATGT
* * *
91543691 CTTACACTGGCACTCACCTTTAC-GCTAATGCCATGTCCCAGACGTGATCTTACAC
66 CTTACACTAGCACTCACCTATACAGCTAATG-CATGTCCCAGACATG-TCTTACAC
91543746 GGGCTATCAT
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
137 6 0.06
138 14 0.14
139 40 0.40
140 28 0.28
141 13 0.13
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (140 bp):
CATGTCCCAGACATCGTCTTACACTGGCTAACATCATCGAGGCCGATGCCATGTCCCAGACATGT
CTTACACTAGCACTCACCTATACAGCTAATGCATGTCCCAGACATGTCTTACACTAGCACGAAAA
TAAGCCGATG
Found at i:91546763 original size:49 final size:49
Alignment explanation
Indices: 91546703--91547100 Score: 670
Period size: 49 Copynumber: 8.1 Consensus size: 49
91546693 TTTACCACAT
* * *
91546703 ATATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
91546752 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
91546801 ATATATATACATTTTCACATTCATCATATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
91546850 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
91546899 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
91546948 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
91546997 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
91547046 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
91547095 ATATAT
1 ATATAT
91547101 TATTATGTAC
Statistics
Matches: 332, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 332 1.00
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:91550439 original size:36 final size:36
Alignment explanation
Indices: 91550392--91550464 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
91550382 AGTAGTCGAC
91550392 ACGCACTAGTATGAAGTGTGCTGACTTAGTGTGTCT
1 ACGCACTAGTATGAAGTGTGCTGACTTAGTGTGTCT
91550428 ACGCACTAGTATGAAGTGTGCTGACTTAGTGTGTCT
1 ACGCACTAGTATGAAGTGTGCTGACTTAGTGTGTCT
91550464 A
1 A
91550465 TCGACAATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.33
Consensus pattern (36 bp):
ACGCACTAGTATGAAGTGTGCTGACTTAGTGTGTCT
Found at i:91552736 original size:26 final size:26
Alignment explanation
Indices: 91552707--91552759 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
91552697 ACGGGGCATC
*
91552707 AAATCCATACATATATAGGAGTGGGT
1 AAATCCATACATATATAGAAGTGGGT
91552733 AAATCCATACATATATAGAAGTGGGT
1 AAATCCATACATATATAGAAGTGGGT
91552759 A
1 A
91552760 GACCCCGGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (26 bp):
AAATCCATACATATATAGAAGTGGGT
Found at i:91555621 original size:47 final size:46
Alignment explanation
Indices: 91555412--91555762 Score: 227
Period size: 47 Copynumber: 7.4 Consensus size: 46
91555402 TTGCCACTGC
* * *
91555412 CATGTCCCAGACATGGTCTTACGCTGGCTATC-TCCATCGAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTAACAT-CATCGA-GCCGATG
* * ** * * *
91555460 CCATGTCCCAGACATGGTCTTACACCAGTTCTCATGTATACGTGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTAACAT-CAT-CGAGCCGATG
* * *
91555510 CATGTCCCAGACATGTCTTACACTAGC--ACA-AAACTGAGCCGGTG
1 CATGTCCCAGACATGTCTTACACTAGCTAACATCATC-GAGCCGATG
*
91555554 CATGTCCCAGACATGTCTTACACTAGCTAACATCATCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTAACATCATCGA-GCCGATG
* *
91555601 CATGTCCCAGACATGTCTTACACTGGC--AC-TCACCTCTACGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTAACATCA--TCGA-GCCGATG
* * * *
91555647 CCATGTCCCAGACGTGATCTTACACGT-GCTATCATGAT-GCAGCTGATG
1 -CATGTCCCAGACATG-TCTTACAC-TAGCTAACATCATCG-AGCCGATG
* *** * *
91555695 CATGTCCCAGACACGTCTTACACTAGCCCTCGTC-TCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTAACATCATCGA-GCCGATG
91555741 CCATGTCCCAGACATGGTCTTA
1 -CATGTCCCAGACAT-GTCTTA
91555763 TACTGGGTCT
Statistics
Matches: 242, Mismatches: 39, Indels: 43
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.00
44 37 0.15
45 5 0.02
46 35 0.14
47 73 0.30
48 33 0.14
49 44 0.18
50 10 0.04
51 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.25
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTAACATCATCGAGCCGATG
Found at i:91555697 original size:141 final size:140
Alignment explanation
Indices: 91555412--91555762 Score: 351
Period size: 141 Copynumber: 2.5 Consensus size: 140
91555402 TTGCCACTGC
* * *
91555412 CATGTCCCAGACATGGTCTTACGCTGGCTATCTCCATCGAGGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACAT-GTCTTACACTAGCTAACTCCATCGAGGCCGATGCCATGTCCCAGACATGG
** ** *
91555477 TCTTACACCAGTTCTCATGTATACGTGCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAA
65 TCTTACACCAGCACTCACCTATACG-GCCGATGCATGTCCCAGACATGTCTTACACTAGCACAAA
*
91555542 ACTGAGCCGGTG
129 ACTGAGCCGATG
*
91555554 CATGTCCCAGACATGTCTTACACTAGCTAACAT-CATCGAGGCTGATG-CATGTCCCAGACAT-G
1 CATGTCCCAGACATGTCTTACACTAGCTAAC-TCCATCGAGGCCGATGCCATGTCCCAGACATGG
** * *
91555616 TCTTACACTGGCACTCACCTCTAC-GCCGATGCCATGTCCCAGACGTGATCTTACACGT-GCTAT
65 TCTTACACCAGCACTCACCTATACGGCCGATG-CATGTCCCAGACATG-TCTTACAC-TAGC-A-
** *
91555679 CATGA-TGCAGCTGATG
125 CAAAACTG-AGCCGATG
* * * *
91555695 CATGTCCCAGACACGTCTTACACTAGC--CCTCGTC-TCAATGCCGATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGTCTTACACTAGCTAACTC--CATCGAGGCCGATGCCATGTCCCAGACATG
91555757 GTCTTA
64 GTCTTA
91555763 TACTGGGTCT
Statistics
Matches: 175, Mismatches: 22, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
137 6 0.03
138 15 0.09
139 29 0.17
140 27 0.15
141 77 0.44
142 21 0.12
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.25
Consensus pattern (140 bp):
CATGTCCCAGACATGTCTTACACTAGCTAACTCCATCGAGGCCGATGCCATGTCCCAGACATGGT
CTTACACCAGCACTCACCTATACGGCCGATGCATGTCCCAGACATGTCTTACACTAGCACAAAAC
TGAGCCGATG
Found at i:91555706 original size:94 final size:92
Alignment explanation
Indices: 91555412--91555767 Score: 353
Period size: 94 Copynumber: 3.8 Consensus size: 92
91555402 TTGCCACTGC
* * *
91555412 CATGTCCCAGACATGGTCTTACGCTGGCTATCTC-CATCGAGGCCGATGCCATGTCCCAGACATG
1 CATGTCCCAGACAT-GTCTTACACTAGC-A-CTCACCTCGA-GCCGATGCCATGTCCCAGACATG
* * * *
91555476 GTCTTACACCAGTTCTCATGTATACGTGCTGATG
62 GTCTTACA-CTGCTATCATG-AT-CGAGCTGATG
** * *
91555510 CATGTCCCAGACATGTCTTACACTAGCACAAAACT-GAGCCGGTG-CATGTCCCAGACAT-GTCT
1 CATGTCCCAGACATGTCTTACACTAGCACTCACCTCGAGCCGATGCCATGTCCCAGACATGGTCT
* *
91555572 TACACTAGCTAACATCATCGAGGCTGATG
66 TACACT-GCTATCATGATCGA-GCTGATG
* * * *
91555601 CATGTCCCAGACATGTCTTACACTGGCACTCACCTCTACGCCGATGCCATGTCCCAGACGTGATC
1 CATGTCCCAGACATGTCTTACACTAGCACTCACCTCGA-GCCGATGCCATGTCCCAGACATGGTC
91555666 TTACACGTGCTATCATGAT-GCAGCTGATG
65 TTACAC-TGCTATCATGATCG-AGCTGATG
* * ** *
91555695 CATGTCCCAGACACGTCTTACACTAGCCCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCACTCACCTCGA-GCCGATGCCATGTCCCAGACATGGTC
*
91555760 TTATACTG
65 TTACACTG
91555768 GGTCTCACAT
Statistics
Matches: 216, Mismatches: 33, Indels: 23
0.79 0.12 0.08
Matches are distributed among these distances:
90 2 0.01
91 41 0.19
92 14 0.06
93 22 0.10
94 88 0.41
95 21 0.10
96 3 0.01
97 11 0.05
98 14 0.06
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCACCTCGAGCCGATGCCATGTCCCAGACATGGTCT
TACACTGCTATCATGATCGAGCTGATG
Found at i:91564783 original size:40 final size:41
Alignment explanation
Indices: 91564721--91564813 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 41
91564711 TATGTTCGGT
*
91564721 ACTAAGTGTGC-AGTTCGAAATAGCTCCAGCTACAAATGGC
1 ACTAAGTGTGCGAGTTCGAAATAGCTCCAGCTACAAAAGGC
* * * * *
91564761 ACTAAATGTGCGAGTT-GGAATAGCTTCAGTTATAAAAGGC
1 ACTAAGTGTGCGAGTTCGAAATAGCTCCAGCTACAAAAGGC
91564801 ACTAAGTGTGCGA
1 ACTAAGTGTGCGA
91564814 TACTGAGATA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 41 0.91
41 4 0.09
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (41 bp):
ACTAAGTGTGCGAGTTCGAAATAGCTCCAGCTACAAAAGGC
Found at i:91571039 original size:33 final size:33
Alignment explanation
Indices: 91570997--91571064 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
91570987 GATATTTATA
91570997 TATTAGCTCTTCTGGAGGTTTAAACTAATTTTG
1 TATTAGCTCTTCTGGAGGTTTAAACTAATTTTG
91571030 TATTAGCTCTTCTGGAGGTTTAAACTAATTTTG
1 TATTAGCTCTTCTGGAGGTTTAAACTAATTTTG
91571063 TA
1 TA
91571065 CTATCAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.46
Consensus pattern (33 bp):
TATTAGCTCTTCTGGAGGTTTAAACTAATTTTG
Found at i:91574738 original size:22 final size:22
Alignment explanation
Indices: 91574697--91574737 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
91574687 GATGGTTAAT
*
91574697 TAAAGAAAAAAGACTAAAAATG
1 TAAAGAAAAAAAACTAAAAATG
91574719 TAAA-AAAAAAAACTAAAAA
1 TAAAGAAAAAAAACTAAAAA
91574738 AGTTAATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.76, C:0.05, G:0.07, T:0.12
Consensus pattern (22 bp):
TAAAGAAAAAAAACTAAAAATG
Found at i:91579567 original size:46 final size:46
Alignment explanation
Indices: 91579480--91579672 Score: 255
Period size: 46 Copynumber: 4.2 Consensus size: 46
91579470 CGTCTCCCAT
* * * * *
91579480 CCATGGTCTTATTTATCTT-TGACATGATGCCATAGTGTCTTTCAA
1 CCATGGTCTTATTCATTTTCTGTCATGATGCCATGGTATCTTTCAA
* * *
91579525 CTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAA
1 CCATGGTCTTATTCATTTTCTGTCATGATGCCATGGTATCTTTCAA
91579571 CCATGGTCTTATTCA-TTTCATGTCATGATGCCATGGTATCTTTCAA
1 CCATGGTCTTATTCATTTTC-TGTCATGATGCCATGGTATCTTTCAA
* * * *
91579617 CCATGGTCTTATTTATTTCCCGTCATGTTGCCATGGTATCTTTCAA
1 CCATGGTCTTATTCATTTTCTGTCATGATGCCATGGTATCTTTCAA
91579663 CCATGGTCTT
1 CCATGGTCTT
91579673 TGTGACAGCC
Statistics
Matches: 130, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
45 19 0.15
46 108 0.83
47 3 0.02
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (46 bp):
CCATGGTCTTATTCATTTTCTGTCATGATGCCATGGTATCTTTCAA
Found at i:91581436 original size:40 final size:40
Alignment explanation
Indices: 91581351--91581501 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
91581341 AATTGAATGA
* * *
91581351 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
91581391 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
91581432 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
91581471 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
91581502 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:91581515 original size:40 final size:40
Alignment explanation
Indices: 91581387--91581517 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
91581377 TATGCTGGAA
* * *
91581387 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
91581427 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
91581467 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
91581507 ATTATATCCGG
1 ATTATATCCGG
91581518 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:91589447 original size:40 final size:40
Alignment explanation
Indices: 91589362--91589512 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
91589352 AATTGAATGA
* * *
91589362 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
91589402 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
91589443 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
91589482 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
91589513 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:91589526 original size:40 final size:40
Alignment explanation
Indices: 91589398--91589528 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
91589388 TATGCTGGAA
* * *
91589398 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
91589438 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
91589478 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
91589518 ATTATATCCGG
1 ATTATATCCGG
91589529 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:91590978 original size:46 final size:45
Alignment explanation
Indices: 91590887--91591044 Score: 262
Period size: 46 Copynumber: 3.5 Consensus size: 45
91590877 GGGTGTTACA
* *
91590887 GTCTTCCACGTTTCATATCAGGTGCCATGGTATCTTTCAACCATG
1 GTCTTACACATTTCATATCAGGTGCCATGGTATCTTTCAACCATG
* *
91590932 GTCTTACACGTTTCATATCAGGCTGCCATGGTATCTTTCAATCATG
1 GTCTTACACATTTCATATCAGG-TGCCATGGTATCTTTCAACCATG
91590978 GTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATG
1 GTCTTACACATTTCATATCAGG-TGCCATGGTATCTTTCAACCATG
91591024 GTCTTACACATTTCATATCAG
1 GTCTTACACATTTCATATCAG
91591045 AGAGCACACT
Statistics
Matches: 107, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
45 21 0.20
46 86 0.80
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (45 bp):
GTCTTACACATTTCATATCAGGTGCCATGGTATCTTTCAACCATG
Found at i:91598015 original size:2 final size:2
Alignment explanation
Indices: 91598008--91598033 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
91597998 ATGTGTTATG
91598008 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
91598034 GTGCATGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91598144 original size:39 final size:39
Alignment explanation
Indices: 91598090--91598274 Score: 280
Period size: 39 Copynumber: 4.7 Consensus size: 39
91598080 TGTGTGAGAT
91598090 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
91598129 TTATATCCGAGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
91598168 TTATATCCGAGCTAAGTCCCGAAGGTATTTGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
91598207 TTATATCCGGGCTAAGTCTCAAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
91598246 TTATATCCGGGCTAAGTCCCAAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
91598275 TGTGTTGGAA
Statistics
Matches: 133, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 133 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:91603438 original size:23 final size:24
Alignment explanation
Indices: 91603412--91603464 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
91603402 CCACCAAATA
*
91603412 AAATATTACTCTTTTAAAAT-TTT
1 AAATATAACTCTTTTAAAATATTT
* *
91603435 AAATATAATTTTTTTAAAATATTT
1 AAATATAACTCTTTTAAAATATTT
*
91603459 GAATAT
1 AAATAT
91603465 CTTTAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 17 0.68
24 8 0.32
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (24 bp):
AAATATAACTCTTTTAAAATATTT
Found at i:91603503 original size:22 final size:21
Alignment explanation
Indices: 91603478--91603554 Score: 84
Period size: 22 Copynumber: 3.5 Consensus size: 21
91603468 TAAAAATAAT
91603478 TTTAAAAATATATATTTATAAA
1 TTTAAAAATATATATTTA-AAA
91603500 TTTAAAAAT-TAATATTTAAAA
1 TTTAAAAATAT-ATATTTAAAA
* *
91603521 TTTTTAAAATATACATTTAAAA
1 -TTTAAAAATATATATTTAAAA
91603543 TATTATAAAATA
1 T-TTA-AAAATA
91603555 AATAATAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
21 5 0.11
22 35 0.74
23 7 0.15
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAAAAATATATATTTAAAA
Found at i:91603507 original size:23 final size:22
Alignment explanation
Indices: 91603475--91603554 Score: 81
Period size: 23 Copynumber: 3.6 Consensus size: 22
91603465 CTTTAAAAAT
*
91603475 AATTTTAAAAATATATATTTATA
1 AATTTAAAAAATATATATTTA-A
*
91603498 AATTTAAAAATTA-ATATTTAA
1 AATTTAAAAAATATATATTTAA
** *
91603519 AATTTTTAAAATATACATTTAA
1 AATTTAAAAAATATATATTTAA
*
91603541 AATATTATAAAATA
1 AAT-TTAAAAAATA
91603555 AATAATAAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
21 11 0.23
22 17 0.35
23 20 0.42
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (22 bp):
AATTTAAAAAATATATATTTAA
Found at i:91603702 original size:11 final size:11
Alignment explanation
Indices: 91603686--91603721 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
91603676 AAATATTGTA
91603686 AAACAAATAAT
1 AAACAAATAAT
91603697 AAACAAATAAT
1 AAACAAATAAT
91603708 AAA-AAACTAAT
1 AAACAAA-TAAT
91603719 AAA
1 AAA
91603722 AAACAGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 3 0.12
11 21 0.88
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17
Consensus pattern (11 bp):
AAACAAATAAT
Found at i:91603713 original size:25 final size:26
Alignment explanation
Indices: 91603685--91603751 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
91603675 AAAATATTGT
* *
91603685 AAAACAAATAATAAACA-AATAATAA
1 AAAACAAATAAAAAACAGAAAAATAA
* *
91603710 AAAACTAATAAAAAACAGAAAAATGA
1 AAAACAAATAAAAAACAGAAAAATAA
*
91603736 AAAATAAATTAAAAAA
1 AAAACAAA-TAAAAAA
91603752 ATTCAGAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 15 0.44
26 12 0.35
27 7 0.21
ACGTcount: A:0.76, C:0.06, G:0.03, T:0.15
Consensus pattern (26 bp):
AAAACAAATAAAAAACAGAAAAATAA
Found at i:91603722 original size:11 final size:11
Alignment explanation
Indices: 91603693--91603725 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
91603683 GTAAAACAAA
91603693 TAATAAACAAA-
1 TAATAAA-AAAC
91603704 TAATAAAAAAC
1 TAATAAAAAAC
91603715 TAATAAAAAAC
1 TAATAAAAAAC
91603726 AGAAAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 3 0.14
11 18 0.86
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (11 bp):
TAATAAAAAAC
Found at i:91603963 original size:12 final size:12
Alignment explanation
Indices: 91603946--91603978 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
91603936 CGGCCCACCC
91603946 ATATTAATTTTT
1 ATATTAATTTTT
91603958 ATATT-ATTTTT
1 ATATTAATTTTT
91603969 ATA-TAATTTT
1 ATATTAATTTT
91603979 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:91604218 original size:22 final size:22
Alignment explanation
Indices: 91604193--91604235 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
91604183 TATCCAAATA
91604193 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
91604215 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
91604236 AATAGGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:91604239 original size:11 final size:11
Alignment explanation
Indices: 91604200--91604240 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
91604190 ATAATAACAA
91604200 CAAAATAGTAG
1 CAAAATAGTAG
* *
91604211 CAACATAATAG
1 CAAAATAGTAG
*
91604222 TAAAATAGTAG
1 CAAAATAGTAG
91604233 CAAAATAG
1 CAAAATAG
91604241 GAAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:91608941 original size:48 final size:48
Alignment explanation
Indices: 91608858--91609155 Score: 303
Period size: 48 Copynumber: 6.2 Consensus size: 48
91608848 TACATTGGCT
* * * *
91608858 CTCATATATCG-GTGCCGATGCCATGTTCCAAACATGGTCTTACACTAT
1 CTCACATATCGAG-GCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* * *
91608906 CCCACATGTCGAGGCC-ATTGCCATATCCCAGACATGGTCTTACACTAG
1 CTCACATATCGAGGCCGA-TGCCATGTCCCAGACATGGTCTTACACTAG
* * * * * * *
91608954 CTCTCATATAGATGCCGATGCCACGTTCCAAACATGGTCTTACACTGG
1 CTCACATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* ** *
91609002 CTCACATATCGAAGCCGGCGCCATGTCCCAGACATGGTCTTACACTGG
1 CTCACATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* *
91609050 CTCACATATCAAGGCCGATGCCATGTCCCAGACATGGTCTTATACTAG
1 CTCACATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* * * * * * * * *
91609098 CTCTCATATAGATGCTGATTCCATATTCCAAACATGGTCTTACACTGG
1 CTCACATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
91609146 CTCACATATC
1 CTCACATATC
91609156 CCTAGAATCA
Statistics
Matches: 203, Mismatches: 44, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
47 1 0.00
48 200 0.99
49 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CTCACATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
Found at i:91608999 original size:96 final size:96
Alignment explanation
Indices: 91608830--91609154 Score: 357
Period size: 96 Copynumber: 3.4 Consensus size: 96
91608820 CTAATTCAAG
* * * * *
91608830 ATATCACAGATATGGTCTTACATTGGCTCTCATATATCGGTGCCGATGCCATGTTCCAAACATGG
1 ATATCCCAGACATGGTCTTACACTGGCTCACATATA--GATGCCGATGCCATGTTCCAAACATGG
* * * *
91608895 TCTTACACTATCCCACATGTCGAGGCCATTGCC
64 TCTTACACTAGCTCACATATCGAAGCCATTGCC
* * *
91608928 ATATCCCAGACATGGTCTTACACTAGCTCTCATATAGATGCCGATGCCACGTTCCAAACATGGTC
1 ATATCCCAGACATGGTCTTACACTGGCTCACATATAGATGCCGATGCCATGTTCCAAACATGGTC
* ***
91608993 TTACACTGGCTCACATATCGAAGCCGGCGCC
66 TTACACTAGCTCACATATCGAAGCCATTGCC
* * * *
91609024 ATGTCCCAGACATGGTCTTACACTGGCTCACATATCA-AGGCCGATGCCATGTCCCAGACATGGT
1 ATATCCCAGACATGGTCTTACACTGGCTCACATAT-AGATGCCGATGCCATGTTCCAAACATGGT
* * * * *
91609088 CTTATACTAGCTCTCATATAGATGCTGATT-CC
65 CTTACACTAGCTCACATATCGAAGC-CATTGCC
* *
91609120 ATATTCCAAACATGGTCTTACACTGGCTCACATAT
1 ATATCCCAGACATGGTCTTACACTGGCTCACATAT
91609155 CCCTAGAATC
Statistics
Matches: 192, Mismatches: 33, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
96 159 0.83
97 1 0.01
98 32 0.17
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (96 bp):
ATATCCCAGACATGGTCTTACACTGGCTCACATATAGATGCCGATGCCATGTTCCAAACATGGTC
TTACACTAGCTCACATATCGAAGCCATTGCC
Found at i:91609065 original size:144 final size:144
Alignment explanation
Indices: 91608841--91609155 Score: 425
Period size: 144 Copynumber: 2.2 Consensus size: 144
91608831 TATCACAGAT
* * ** * * *
91608841 ATGGTCTTACATTGGCTCTCATATATCGGTGCCGATGCCATGTTCCAAACATGGTCTTACACTAT
1 ATGGTCTTACACTGG--CTCACATATCGAAGCCGACGCCATGTCCCAAACATGGTCTTACACTAG
* *
91608906 CCCACATGTCGAGGCC-ATTGCCATATCCCAGACATGGTCTTACACTAGCTCTCATATAGATGCC
64 CCCACATATCAAGGCCGA-TGCCATATCCCAGACATGGTCTTACACTAGCTCTCATATAGATGCC
*
91608970 GATGCCACGTTCCAAAC
128 GATGCCACATTCCAAAC
* * * *
91608987 ATGGTCTTACACTGGCTCACATATCGAAGCCGGCGCCATGTCCCAGACATGGTCTTACACTGGCT
1 ATGGTCTTACACTGGCTCACATATCGAAGCCGACGCCATGTCCCAAACATGGTCTTACACTAGCC
* * *
91609052 CACATATCAAGGCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATATAGATGCTGAT
66 CACATATCAAGGCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATATAGATGCCGAT
* *
91609117 TCCATATTCCAAAC
131 GCCACATTCCAAAC
91609131 ATGGTCTTACACTGGCTCACATATC
1 ATGGTCTTACACTGGCTCACATATC
91609156 CCTAGAATCA
Statistics
Matches: 149, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
144 134 0.90
145 1 0.01
146 14 0.09
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (144 bp):
ATGGTCTTACACTGGCTCACATATCGAAGCCGACGCCATGTCCCAAACATGGTCTTACACTAGCC
CACATATCAAGGCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATATAGATGCCGAT
GCCACATTCCAAAC
Found at i:91611514 original size:25 final size:27
Alignment explanation
Indices: 91611460--91611514 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
91611450 TAAAAATATT
*
91611460 TTTTAACAAAAATACAAAAAATCAAGA
1 TTTTAACAAAAATACAAAAAATCAAAA
* *
91611487 TTTTAA-AAAAAT-CAAAAATTGAAAA
1 TTTTAACAAAAATACAAAAAATCAAAA
91611512 TTT
1 TTT
91611515 ACAATAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 13 0.52
26 6 0.24
27 6 0.24
ACGTcount: A:0.60, C:0.07, G:0.04, T:0.29
Consensus pattern (27 bp):
TTTTAACAAAAATACAAAAAATCAAAA
Found at i:91616905 original size:24 final size:24
Alignment explanation
Indices: 91616877--91616952 Score: 63
Period size: 24 Copynumber: 3.3 Consensus size: 24
91616867 TAAATACTAT
91616877 ATAATTTAATTAAAATTAGTATGA
1 ATAATTTAATTAAAATTAGTATGA
*
91616901 ATAATTATAA--AAAA-TACTATG-
1 ATAATT-TAATTAAAATTAGTATGA
* * * *
91616922 -TAATTTAGTTAAAATTCGTTTTA
1 ATAATTTAATTAAAATTAGTATGA
91616945 ATAATTTA
1 ATAATTTA
91616953 TAATAGATAC
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
19 2 0.05
20 5 0.12
21 4 0.10
22 9 0.22
23 4 0.10
24 13 0.32
25 3 0.08
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (24 bp):
ATAATTTAATTAAAATTAGTATGA
Found at i:91616926 original size:44 final size:45
Alignment explanation
Indices: 91616863--91616988 Score: 164
Period size: 44 Copynumber: 2.8 Consensus size: 45
91616853 GTATTAATAA
*
91616863 ATAATAAATACTATATAATTTAATTAAAATTAGTATGAATAA-TT
1 ATAATAAATACTATGTAATTTAATTAAAATTAGTATGAATAATTT
* * * * *
91616907 ATAAAAAATACTATGTAATTTAGTTAAAATTCGTTTTAATAATTT
1 ATAATAAATACTATGTAATTTAATTAAAATTAGTATGAATAATTT
*
91616952 ATAATAGATACTATGTAATTTAATTAAATATTTAGTA
1 ATAATAAATACTATGTAATTTAATTAAA-A-TTAGTA
91616989 GACAAAAATA
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 36 0.53
45 27 0.40
46 1 0.01
47 4 0.06
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (45 bp):
ATAATAAATACTATGTAATTTAATTAAAATTAGTATGAATAATTT
Found at i:91616935 original size:22 final size:21
Alignment explanation
Indices: 91616868--91616935 Score: 57
Period size: 22 Copynumber: 3.1 Consensus size: 21
91616858 AATAAATAAT
*
91616868 AAATACTATATAATTTAATTAA
1 AAATACTATGTAATTT-ATTAA
* * *
91616890 AATTAGTATG-AATAATTATAAA
1 AAATACTATGTAAT--TTATTAA
91616912 AAATACTATGTAATTTAGTTAA
1 AAATACTATGTAATTTA-TTAA
91616934 AA
1 AA
91616936 TTCGTTTTAA
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
21 6 0.17
22 24 0.69
23 5 0.14
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (21 bp):
AAATACTATGTAATTTATTAA
Found at i:91617652 original size:13 final size:13
Alignment explanation
Indices: 91617631--91617665 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
91617621 TTGCCAATAG
*
91617631 GTATTGATCCATC
1 GTATCGATCCATC
91617644 GTATCGATCCATC
1 GTATCGATCCATC
91617657 GTATCGATC
1 GTATCGATC
91617666 ATTGAATCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (13 bp):
GTATCGATCCATC
Found at i:91618997 original size:53 final size:53
Alignment explanation
Indices: 91618916--91619066 Score: 189
Period size: 53 Copynumber: 2.8 Consensus size: 53
91618906 CTTACACGGT
* *
91618916 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACA-TTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCA-ATTTA
* *
91618971 TCACATTATACCGATGCCATAGCCCAGCTACGGTCTTATACGGAGTCAATTTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAATTTA
** *
91619024 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
91619067 GCACACTTAT
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
52 2 0.02
53 77 0.90
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAATTTA
Found at i:91625885 original size:46 final size:45
Alignment explanation
Indices: 91625825--91626090 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
91625815 TTTGACATGA
* * * * * *
91625825 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
91625871 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
91625917 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
91625963 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
91626009 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
91626047 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
91626091 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:91626054 original size:38 final size:38
Alignment explanation
Indices: 91626003--91626078 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
91625993 ACATTTTATA
91626003 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
91626041 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
91626079 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:91628829 original size:18 final size:19
Alignment explanation
Indices: 91628803--91628858 Score: 73
Period size: 18 Copynumber: 3.1 Consensus size: 19
91628793 CTTTAAACCC
* *
91628803 AAACACTAAACCCTTA-AA
1 AAACCCTAAACCCTAACAA
91628821 AAACCCT-AACCCTAACAA
1 AAACCCTAAACCCTAACAA
91628839 AAACCCTAAA-CCTAACAA
1 AAACCCTAAACCCTAACAA
91628857 AA
1 AA
91628859 TTAAAAAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.21
18 25 0.74
19 2 0.06
ACGTcount: A:0.55, C:0.32, G:0.00, T:0.12
Consensus pattern (19 bp):
AAACCCTAAACCCTAACAA
Found at i:91629123 original size:30 final size:30
Alignment explanation
Indices: 91629070--91629129 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
91629060 AATTAAAGAA
** *
91629070 ATTAAAAGATAAAATTAGTATTTCCTTTCT
1 ATTAAAAGATAAAATTAACATTTCATTTCT
*
91629100 ATTAAAAGATAAATTTAACATTTCATTTCT
1 ATTAAAAGATAAAATTAACATTTCATTTCT
91629130 TCTTCATGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.43
Consensus pattern (30 bp):
ATTAAAAGATAAAATTAACATTTCATTTCT
Found at i:91644076 original size:291 final size:291
Alignment explanation
Indices: 91643545--91644109 Score: 1067
Period size: 291 Copynumber: 1.9 Consensus size: 291
91643535 TTCATCATCC
* * *
91643545 CAAACAATTTTTGTTGCTAAGGTACTCTCCCTTCACAAAATTTTGTGTCTTTACCATCTATTATT
1 CAAACAATTTTTGTTGCTAAGGTACTCTCCCTCCACAAAATTTCGTGTCTTTACCATCTATTATC
91643610 ATTTTGATTTTAAATGTCAATCGACATAAAACTATAAGTATATAATTAGATATAATAATATAGTT
66 ATTTTGATTTTAAATGTCAATCGACATAAAACTATAAGTATATAATTAGATATAATAATATAGTT
*
91643675 TTATAAAAAATAAGAATAATACATCACGAATGGATGAAAGCCATAAGATGAACACTAATGAAAAA
131 TCATAAAAAATAAGAATAATACATCACGAATGGATGAAAGCCATAAGATGAACACTAATGAAAAA
*
91643740 ATTCTCAAAGATCCATAGTTAACAATAACGAGGATATAAAAATGATAGTTAATCAATTAAGAGAA
196 ATTCTCAAAGATCCATAGTAAACAATAACGAGGATATAAAAATGATAGTTAATCAATTAAGAGAA
91643805 TATATACCAAAATTCTCAAGTACCTTAGCAA
261 TATATACCAAAATTCTCAAGTACCTTAGCAA
*
91643836 CAAACAGTTTTTGTTGCTAAGGTACTCTCCCTCCACAAAATTTCGTGTCTTTACCATCTATTATC
1 CAAACAATTTTTGTTGCTAAGGTACTCTCCCTCCACAAAATTTCGTGTCTTTACCATCTATTATC
91643901 ATTTTGATTTTAAATGTCAATCGACATAAAACTATAAGTATATAATTAGATATAATAATATAGTT
66 ATTTTGATTTTAAATGTCAATCGACATAAAACTATAAGTATATAATTAGATATAATAATATAGTT
91643966 TCATAAAAAATAAGAATAATACATCACGAATGGATGAAAGCCATAAGATGAACACTAATGAAAAA
131 TCATAAAAAATAAGAATAATACATCACGAATGGATGAAAGCCATAAGATGAACACTAATGAAAAA
*
91644031 ATTCTCAAAGATCCATAGTAAACAATAATGAGGATATAAAAATGATAGTTAATCAATTAAGAGAA
196 ATTCTCAAAGATCCATAGTAAACAATAACGAGGATATAAAAATGATAGTTAATCAATTAAGAGAA
91644096 TATATACCAAAATT
261 TATATACCAAAATT
91644110 TTCAGATTAT
Statistics
Matches: 267, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
291 267 1.00
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (291 bp):
CAAACAATTTTTGTTGCTAAGGTACTCTCCCTCCACAAAATTTCGTGTCTTTACCATCTATTATC
ATTTTGATTTTAAATGTCAATCGACATAAAACTATAAGTATATAATTAGATATAATAATATAGTT
TCATAAAAAATAAGAATAATACATCACGAATGGATGAAAGCCATAAGATGAACACTAATGAAAAA
ATTCTCAAAGATCCATAGTAAACAATAACGAGGATATAAAAATGATAGTTAATCAATTAAGAGAA
TATATACCAAAATTCTCAAGTACCTTAGCAA
Found at i:91646872 original size:75 final size:74
Alignment explanation
Indices: 91646733--91647132 Score: 224
Period size: 65 Copynumber: 5.8 Consensus size: 74
91646723 GTAGTTTGTA
* *
91646733 AAATATTGAAAATAGAAGAGTAAAGTAAAATATAAATAAAATTAAGGGAGAAATTTGTAGATAAA
1 AAATATTGAAAATAAAAGAGCAAAGTAAAATATAAATAAAATTAAGGGAGAAATTTGTAGATAAA
91646798 TAATAATAAT
66 -AATAATAAT
* * * *
91646808 AAATATTGAAAATAAAATAGCAAATTAAAATGTAAATAAAATTAAGGGAGCAA-TT-T---T---
1 AAATATTGAAAATAAAAGAGCAAAGTAAAATATAAATAAAATTAAGGGAGAAATTTGTAGATAAA
91646865 AAT-ATAA-
66 AATAATAAT
** * * *
91646872 AAATATTGAAAATAAAAGAGCGAATTTAAAATATAAATAAAATTAACGGAGCAATTTGT-GA-AT
1 AAATATTGAAAATAAAAGAGC-AAAGTAAAATATAAATAAAATTAAGGGAGAAATTTGTAGATAA
*
91646935 AAAT-AT-AC
65 AAATAATAAT
* * * * **
91646943 AAATA---AAAATAATAATA--ATACTAATAATA-ATAATAATAA-TAA--TA-ATAA-TAATA-
1 AAATATTGAAAATAA-AAGAGCAAAGTAA-AATATA-AATAA-AATTAAGGGAGA-AATTTGTAG
*
91646996 ATAATAATAATAAT
61 ATAAAAATAATAAT
* * * * *
91647010 AAATATTGAAAATAAAATAGCAAATTAAAATGTAAATAAAATTAAGGGGGTAA-TT-T---T---
1 AAATATTGAAAATAAAAGAGCAAAGTAAAATATAAATAAAATTAAGGGAGAAATTTGTAGATAAA
91647067 AAT-ATAA-
66 AATAATAAT
* ** *
91647074 AAATATTAAAAATAAAAGAGCGAATTTAAAATATAAATAAAATTAAGGGAGCAATTTGT
1 AAATATTGAAAATAAAAGAGC-AAAGTAAAATATAAATAAAATTAAGGGAGAAATTTGT
91647133 GAATAAATAT
Statistics
Matches: 260, Mismatches: 34, Indels: 70
0.71 0.09 0.19
Matches are distributed among these distances:
64 42 0.16
65 72 0.28
66 17 0.07
67 20 0.08
68 9 0.03
69 10 0.04
70 20 0.08
71 17 0.07
72 3 0.01
73 1 0.00
74 2 0.01
75 47 0.18
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.28
Consensus pattern (74 bp):
AAATATTGAAAATAAAAGAGCAAAGTAAAATATAAATAAAATTAAGGGAGAAATTTGTAGATAAA
AATAATAAT
Found at i:91646928 original size:30 final size:30
Alignment explanation
Indices: 91646826--91646928 Score: 89
Period size: 34 Copynumber: 3.3 Consensus size: 30
91646816 AAAATAAAAT
* * *
91646826 AGCAAATTAAAATGTAAATAAAATTAAGGG
1 AGCAATTTAAAATATAAATAAAATTAAAGG
* * * *
91646856 AGCAATTTTAATATAAAAATATTGAAAATAAAAG
1 AGCAA-TTTAAAATATAAATA---AAATTAAAGG
*
91646890 AGCGAATTTAAAATATAAATAAAATTAACGG
1 AGC-AATTTAAAATATAAATAAAATTAAAGG
91646921 AGCAATTT
1 AGCAATTT
91646929 GTGAATAAAT
Statistics
Matches: 56, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
30 10 0.18
31 21 0.38
34 23 0.41
35 2 0.04
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.27
Consensus pattern (30 bp):
AGCAATTTAAAATATAAATAAAATTAAAGG
Found at i:91646958 original size:3 final size:3
Alignment explanation
Indices: 91646944--91647011 Score: 118
Period size: 3 Copynumber: 22.7 Consensus size: 3
91646934 TAAATATACA
* *
91646944 AAT AAA AAT AAT AAT AAT ACT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91646992 AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
91647012 ATATTGAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:91647142 original size:202 final size:202
Alignment explanation
Indices: 91646796--91647195 Score: 730
Period size: 202 Copynumber: 2.0 Consensus size: 202
91646786 TTTGTAGATA
91646796 AATAATAATAATAAATATTGAAAATAAAATAGCAAATTAAAATGTAAATAAAATTAAGGGAGCAA
1 AATAATAATAATAAATATTGAAAATAAAATAGCAAATTAAAATGTAAATAAAATTAAGGGAGCAA
*
91646861 TTTTAATATAAAAATATTGAAAATAAAAGAGCGAATTTAAAATATAAATAAAATTAACGGAGCAA
66 TTTTAATATAAAAATATTAAAAATAAAAGAGCGAATTTAAAATATAAATAAAATTAACGGAGCAA
*
91646926 TTTGTGAATAAATATACAAATA-AAAATAATAATAATACTAATAATAATAATAATAATAATAATA
131 TTTGTGAATAAATATAC-AATAGAAAATAATAATAATAATAATAATAATAATAATAATAATAATA
91646990 ATAATAAT
195 ATAATAAT
* *
91646998 AATAATAATAATAAATATTGAAAATAAAATAGCAAATTAAAATGTAAATAAAATTAAGGGGGTAA
1 AATAATAATAATAAATATTGAAAATAAAATAGCAAATTAAAATGTAAATAAAATTAAGGGAGCAA
*
91647063 TTTTAATATAAAAATATTAAAAATAAAAGAGCGAATTTAAAATATAAATAAAATTAAGGGAGCAA
66 TTTTAATATAAAAATATTAAAAATAAAAGAGCGAATTTAAAATATAAATAAAATTAACGGAGCAA
*
91647128 TTTGTGAATAAATATACAATAGATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
131 TTTGTGAATAAATATACAATAGAAAATAATAATAATAATAATAATAATAATAATAATAATAATAA
91647193 TAA
196 TAA
91647196 ATATTGAAAA
Statistics
Matches: 191, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
201 4 0.02
202 187 0.98
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.29
Consensus pattern (202 bp):
AATAATAATAATAAATATTGAAAATAAAATAGCAAATTAAAATGTAAATAAAATTAAGGGAGCAA
TTTTAATATAAAAATATTAAAAATAAAAGAGCGAATTTAAAATATAAATAAAATTAACGGAGCAA
TTTGTGAATAAATATACAATAGAAAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAAT
Found at i:91647158 original size:3 final size:3
Alignment explanation
Indices: 91647145--91647195 Score: 93
Period size: 3 Copynumber: 16.7 Consensus size: 3
91647135 ATAAATATAC
91647145 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91647191 AAT AA
1 AAT AA
91647196 ATATTGAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:91647280 original size:17 final size:17
Alignment explanation
Indices: 91647260--91647292 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
91647250 ACAAATACAA
91647260 ATATAAATAAAATAAAT
1 ATATAAATAAAATAAAT
*
91647277 ATATAAGTAAAATAAA
1 ATATAAATAAAATAAA
91647293 GTAGAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (17 bp):
ATATAAATAAAATAAAT
Found at i:91650870 original size:40 final size:40
Alignment explanation
Indices: 91650763--91650945 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 40
91650753 GTTATGAAAT
* * * **
91650763 TAGCAGGCTTCGTGCCAATGAATCTATCAACCTTAGT-GC
1 TAGCAGGCTTTGTGCCAGTGAATTTATCAGGCTTAGTGGC
** * * * * *
91650802 TTAGCAAACTTTGTGTC-GATGTAGTTATCGGGCTTTGTGGC
1 -TAGCAGGCTTTGTGCCAG-TGAATTTATCAGGCTTAGTGGC
* * *
91650843 TAGTAGGCCTTGTGCCAGTGAATTTATCAAGCTTAGT-GC
1 TAGCAGGCTTTGTGCCAGTGAATTTATCAGGCTTAGTGGC
* * * * *
91650882 TTAGCAGGCTTTATGCCAGTGTAGTTATCAGGCTTGGTGCC
1 -TAGCAGGCTTTGTGCCAGTGAATTTATCAGGCTTAGTGGC
*
91650923 TAGCAGGCTTTGTGCCGGTGAAT
1 TAGCAGGCTTTGTGCCAGTGAAT
91650946 CAAGTTTTTT
Statistics
Matches: 104, Mismatches: 34, Indels: 10
0.70 0.23 0.07
Matches are distributed among these distances:
39 2 0.02
40 98 0.94
41 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.33
Consensus pattern (40 bp):
TAGCAGGCTTTGTGCCAGTGAATTTATCAGGCTTAGTGGC
Done.