Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 294 of 433
Found at i:91650907 original size:80 final size:80
Alignment explanation
Indices: 91650763--91650946 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
91650753 GTTATGAAAT
* * *
91650763 TAGCAGG-CTTCGTGCCAATGAATCTATCAACCTTAGTGCTTAGCAAACTTTGTGTCGATGTAGT
1 TAGCAGGCCTT-GTGCCAGTGAATCTATCAACCTTAGTGCTTAGCAAACTTTATGCCGATGTAGT
* * *
91650827 TATCGGGCTTTGTGGC
65 TATCAGGCTTGGTGCC
* * * **
91650843 TAGTAGGCCTTGTGCCAGTGAATTTATCAAGCTTAGTGCTTAGCAGGCTTTATGCC-AGTGTAGT
1 TAGCAGGCCTTGTGCCAGTGAATCTATCAACCTTAGTGCTTAGCAAACTTTATGCCGA-TGTAGT
91650907 TATCAGGCTTGGTGCC
65 TATCAGGCTTGGTGCC
* *
91650923 TAGCAGGCTTTGTGCCGGTGAATC
1 TAGCAGGCCTTGTGCCAGTGAATC
91650947 AAGTTTTTTA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 83 0.95
81 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (80 bp):
TAGCAGGCCTTGTGCCAGTGAATCTATCAACCTTAGTGCTTAGCAAACTTTATGCCGATGTAGTT
ATCAGGCTTGGTGCC
Found at i:91652323 original size:21 final size:21
Alignment explanation
Indices: 91652289--91652328 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
91652279 TGAGAATATG
*
91652289 GGCGTGTGGATTAGCCACATA
1 GGCGTGTGGATTAGACACATA
91652310 GGCGTGT-GAGTTAGACACA
1 GGCGTGTGGA-TTAGACACA
91652329 CGTCCATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.25, C:0.17, G:0.35, T:0.23
Consensus pattern (21 bp):
GGCGTGTGGATTAGACACATA
Found at i:91658906 original size:39 final size:39
Alignment explanation
Indices: 91658863--91658942 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
91658853 AATATATATA
*
91658863 TATATATGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATACGAGAATTATATCCGGACTTCATGTCCGCAGGC
* *
91658902 TATATGCGAGAATTATATCCGGACTTCATGTCCGTAGGC
1 TATATACGAGAATTATATCCGGACTTCATGTCCGCAGGC
91658941 TA
1 TA
91658943 CGTGCTGGAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (39 bp):
TATATACGAGAATTATATCCGGACTTCATGTCCGCAGGC
Found at i:91667004 original size:39 final size:39
Alignment explanation
Indices: 91666961--91667040 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
91666951 TGTGAATATA
*
91666961 TATATGCGAGAATTATATCCGGACTTCATGTCCACAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCACAGGC
* *
91667000 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCACAGGC
91667039 TA
1 TA
91667041 CGTGTTGGAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCACAGGC
Found at i:91669835 original size:31 final size:31
Alignment explanation
Indices: 91669800--91669858 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
91669790 TTGACTATTA
91669800 AACTATTCA-AAAGTTTTTATTTAAGTCATTG
1 AACTATT-AGAAAGTTTTTATTTAAGTCATTG
91669831 AACTATTAGAAAGTTTTTATTTAAGTCA
1 AACTATTAGAAAGTTTTTATTTAAGTCA
91669859 CTCAGTTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.44
Consensus pattern (31 bp):
AACTATTAGAAAGTTTTTATTTAAGTCATTG
Found at i:91672046 original size:2 final size:2
Alignment explanation
Indices: 91672039--91672072 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
91672029 CCACAATTAA
91672039 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91672073 CATCATTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91673968 original size:25 final size:27
Alignment explanation
Indices: 91673936--91673990 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
91673926 TTTTTTTTTA
*
91673936 TTTAAAA-AAACTACCATATTT-TTCTT
1 TTTAAAATACACTACCAT-TTTCTTCTT
*
91673962 TTTAAAATACCCTACCATTTTCTTCTT
1 TTTAAAATACACTACCATTTTCTTCTT
91673989 TT
1 TT
91673991 CTTTCAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (27 bp):
TTTAAAATACACTACCATTTTCTTCTT
Found at i:91674260 original size:20 final size:20
Alignment explanation
Indices: 91674237--91674274 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
91674227 TAATGCATAA
91674237 ATAATAATAATA-AAAATCAT
1 ATAAT-ATAATATAAAATCAT
*
91674257 ATAATCTAATATAAAATC
1 ATAATATAATATAAAATC
91674275 GAACTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.32
Consensus pattern (20 bp):
ATAATATAATATAAAATCAT
Found at i:91674489 original size:2 final size:2
Alignment explanation
Indices: 91674482--91674507 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
91674472 CCTAATCGAT
91674482 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
91674508 AAATGAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91677244 original size:3 final size:3
Alignment explanation
Indices: 91677236--91677271 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
91677226 CATTACTGAG
91677236 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-A GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
91677272 TTTTGGTTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:91699525 original size:34 final size:34
Alignment explanation
Indices: 91699482--91699584 Score: 190
Period size: 34 Copynumber: 3.1 Consensus size: 34
91699472 CGGTCAAGCC
91699482 ACACGCCCGTGTGCTAGGCCGTATGAACATACTA
1 ACACGCCCGTGTGCTAGGCCGTATGAACATACTA
*
91699516 ACACGCCCGTGCGCTAGGCCGTATGAACATACTA
1 ACACGCCCGTGTGCTAGGCCGTATGAACATACTA
91699550 ACACGCCCGTGT-CTAGGCCGTATGAACATACTA
1 ACACGCCCGTGTGCTAGGCCGTATGAACATACTA
91699583 AC
1 AC
91699585 TTCTAAAATT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
33 23 0.34
34 44 0.66
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.19
Consensus pattern (34 bp):
ACACGCCCGTGTGCTAGGCCGTATGAACATACTA
Found at i:91700572 original size:21 final size:21
Alignment explanation
Indices: 91700517--91700692 Score: 86
Period size: 21 Copynumber: 8.4 Consensus size: 21
91700507 CCGAAGGCTG
* * * *
91700517 AACAGAAGCACATAAGTGCTA
1 AACAGAAACTCATAAGAGTTA
* * * *
91700538 AATAGAAACCCATAAGGGTTG
1 AACAGAAACTCATAAGAGTTA
* * * *
91700559 AACGGAAGCTCATAA-AATCTG
1 AACAGAAACTCATAAGAGT-TA
91700580 AACAGAAACTCATAAGAGTTA
1 AACAGAAACTCATAAGAGTTA
* * *
91700601 AACAGAAGCTCA-ATACAGTTG
1 AACAGAAACTCATA-AGAGTTA
* * * *
91700622 AACGGAAACCCATTAGGGTTA
1 AACAGAAACTCATAAGAGTTA
* *
91700643 AACTGAAACTCATATGAGTTA
1 AACAGAAACTCATAAGAGTTA
* * * * *
91700664 AACTGAAGCTCGTGAGAGCTA
1 AACAGAAACTCATAAGAGTTA
91700685 AACAGAAA
1 AACAGAAA
91700693 GTAAATACGA
Statistics
Matches: 113, Mismatches: 38, Indels: 8
0.71 0.24 0.05
Matches are distributed among these distances:
20 2 0.02
21 109 0.96
22 2 0.02
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (21 bp):
AACAGAAACTCATAAGAGTTA
Found at i:91700587 original size:42 final size:41
Alignment explanation
Indices: 91700541--91700656 Score: 124
Period size: 42 Copynumber: 2.8 Consensus size: 41
91700531 AGTGCTAAAT
* *
91700541 AGAAACCCATAAGGGTTGAACGGAAGCTCATAAAATCTGAAC
1 AGAAACCCATAAGGGTTAAACAGAAGCTCATAAAAT-TGAAC
* * * *
91700583 AGAAACTCATAAGAGTTAAACAGAAGCTCAATACAGTTGAAC
1 AGAAACCCATAAGGGTTAAACAGAAGCTC-ATAAAATTGAAC
* * * *
91700625 GGAAACCCATTAGGGTTAAACTGAAACTCATA
1 AGAAACCCATAAGGGTTAAACAGAAGCTCATA
91700657 TGAGTTAAAC
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 3 0.05
42 53 0.87
43 5 0.08
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (41 bp):
AGAAACCCATAAGGGTTAAACAGAAGCTCATAAAATTGAAC
Found at i:91701816 original size:21 final size:21
Alignment explanation
Indices: 91701782--91701821 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91701772 AATTTAGTTC
*
91701782 TTTTCTATCAAAACATTAAAA
1 TTTTCTAACAAAACATTAAAA
* *
91701803 TTTTCTAACGAAACTTTAA
1 TTTTCTAACAAAACATTAA
91701822 TACTACCTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (21 bp):
TTTTCTAACAAAACATTAAAA
Found at i:91705225 original size:40 final size:40
Alignment explanation
Indices: 91705181--91705374 Score: 309
Period size: 40 Copynumber: 4.9 Consensus size: 40
91705171 GATATAGCTT
* *
91705181 CTCGCTCAAATGCCTTCGGGACTTAGTCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
91705221 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
91705261 CTCGCACAATTGCTTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
91705301 CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
91705341 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
91705375 CAATCCAAAT
Statistics
Matches: 142, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 13 0.09
40 129 0.91
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:91705292 original size:80 final size:80
Alignment explanation
Indices: 91705154--91705374 Score: 313
Period size: 80 Copynumber: 2.8 Consensus size: 80
91705144 AAACCAAGTA
** * * *
91705154 CCTTCGGGGTTTAG-CCGGATATAGCT-TCTCGCTCAAATGCCTTCGGGACTTAGTCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
* *
91705217 GTAACTCGCACAATTG
65 GTAACTAGCACAAATG
* * * *
91705233 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCTTTCGGGACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
91705298 TAACTAGCACAAATG
66 TAACTAGCACAAATG
91705313 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
91705375 CAATCCAAAT
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 26 0.21
80 99 0.79
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTAGCACAAATG
Found at i:91713255 original size:15 final size:15
Alignment explanation
Indices: 91713224--91713268 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
91713214 TAAATTATAC
*
91713224 TATATTTTATTAAAT
1 TATATTTTATTTAAT
*
91713239 TATATTTTATTTTAT
1 TATATTTTATTTAAT
* *
91713254 TAAATTATATTTAAT
1 TATATTTTATTTAAT
91713269 AATAATTATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TATATTTTATTTAAT
Found at i:91713263 original size:20 final size:20
Alignment explanation
Indices: 91713210--91713265 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
91713200 ATTAAGAATG
* *
91713210 TTATTAAATTATACTATATT
1 TTATTAAATTATATTTTATT
91713230 TTATTAAATTATATTTTATT
1 TTATTAAATTATATTTTATT
91713250 TTATTAAATTATATTT
1 TTATTAAATTATATTT
91713266 AATAATAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTATTAAATTATATTTTATT
Found at i:91715359 original size:19 final size:21
Alignment explanation
Indices: 91715337--91715381 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
91715327 AAATTTCACA
*
91715337 TTTAAT-TATT-TTTATAATT
1 TTTAATATATTATTAATAATT
*
91715356 TTT-ATATATTATTAATGATT
1 TTTAATATATTATTAATAATT
91715376 TTTAAT
1 TTTAAT
91715382 GTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
18 2 0.10
19 7 0.33
20 10 0.48
21 2 0.10
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTAATATATTATTAATAATT
Found at i:91725868 original size:13 final size:14
Alignment explanation
Indices: 91725850--91725878 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
91725840 ATAAAGAATA
91725850 AAGTAAATAA-AAT
1 AAGTAAATAATAAT
91725863 AAGTAAATAATAAT
1 AAGTAAATAATAAT
91725877 AA
1 AA
91725879 AAATAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (14 bp):
AAGTAAATAATAAT
Found at i:91727392 original size:43 final size:43
Alignment explanation
Indices: 91727331--91727528 Score: 353
Period size: 43 Copynumber: 4.6 Consensus size: 43
91727321 CCGGCATTAT
*
91727331 GCCTGCTAGGCACGAAGGCCTGAATACACATCA-CTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCATC-GGCACGAA
91727374 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
91727417 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
*
91727460 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
*
91727503 GCCTTCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
91727529 TAATACCAGC
Statistics
Matches: 151, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
43 150 0.99
44 1 0.01
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
Found at i:91727578 original size:38 final size:38
Alignment explanation
Indices: 91727521--91727854 Score: 469
Period size: 38 Copynumber: 8.8 Consensus size: 38
91727511 GGCACGAAGG
* * * *
91727521 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
91727559 CCCGGATATATTACTAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
91727597 CTCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
91727635 CCCGGATATATTA-CAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
91727672 CCCGGATATATTACCAGCACGAAGCTTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
91727710 CCCAGATATATTA-CAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* * * *
91727747 CCCGGATATATTATCAGCACGAAGCTTGTGAGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* * *
91727785 CCCGAATATATTACCAGAATGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
91727823 CCCGAATATAATT-CCAGCA-TATAGCCTGCGGG
1 CCCGGATAT-ATTACCAGCACGA-AGCCTGCGGG
91727855 TCTTTAGGCC
Statistics
Matches: 268, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
37 73 0.27
38 192 0.72
39 3 0.01
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:91727687 original size:75 final size:75
Alignment explanation
Indices: 91727521--91727854 Score: 474
Period size: 75 Copynumber: 4.4 Consensus size: 75
91727511 GGCACGAAGG
* * * *
91727521 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATATTACTAGCACGAAGCCT
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTAC-AGCACGAAGCCT
91727586 GCGGGATTTAA
65 GCGGGATTTAA
*
91727597 CTCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAAGCCTG
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAAGCCTG
91727662 CGGGATTTAA
66 CGGGATTTAA
* *
91727672 CCCGGATATATTACCAGCACGAAGCTTGCGGGATTTAACCCAGATATATTACAGCACGAAGCCTG
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAAGCCTG
91727737 CGGGATTTAA
66 CGGGATTTAA
* * * * * * *
91727747 CCCGGATATATTATCAGCACGAAGCTTGTGAGATTTAACCCGAATATATTACCAGAATGAAGCCT
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTA-CAGCACGAAGCCT
91727812 GCGGGATTTAA
65 GCGGGATTTAA
* *
91727823 CCCGAATATAATT-CCAGCA-TATAGCCTGCGGG
1 CCCGGATAT-ATTACCAGCACGA-AGCCTGCGGG
91727855 TCTTTAGGCC
Statistics
Matches: 234, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
75 142 0.61
76 89 0.38
77 3 0.01
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (75 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAAGCCTG
CGGGATTTAA
Found at i:91727765 original size:113 final size:113
Alignment explanation
Indices: 91727521--91727854 Score: 460
Period size: 113 Copynumber: 2.9 Consensus size: 113
91727511 GGCACGAAGG
* * * * *
91727521 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATATTACTAGCACGAAGCCT
1 CCCGGATATATTA-CAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
* *
91727586 GCGGGATTTAACTCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
65 GCGGGATTTAACCCAGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
91727635 CCCGGATATATTACAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCTTG
1 CCCGGATATATTACAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTG
91727700 CGGGATTTAACCCAGATATATTA-CAGCACGAAGCCTGCGGGATTTAA
66 CGGGATTTAACCCAGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* * * * * *
91727747 CCCGGATATATTATCAGCACGAAGCTTGTGAGATTTAACCCGAATATATTACCAGAATGAAGCCT
1 CCCGGATATATTA-CAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
*
91727812 GCGGGATTTAACCC-GAATATAATT-CCAGCA-TATAGCCTGCGGG
65 GCGGGATTTAACCCAG-ATAT-ATTACCAGCACGA-AGCCTGCGGG
91727855 TCTTTAGGCC
Statistics
Matches: 199, Mismatches: 16, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
112 38 0.19
113 132 0.66
114 29 0.15
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (113 bp):
CCCGGATATATTACAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTG
CGGGATTTAACCCAGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:91728927 original size:2 final size:2
Alignment explanation
Indices: 91728920--91728945 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
91728910 TCAAAATGTA
91728920 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
91728946 TCGACTTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91735728 original size:46 final size:46
Alignment explanation
Indices: 91735670--91735850 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
91735660 TAGGATGGTT
*
91735670 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
91735716 GAGCGTCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
* *
91735762 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
91735809 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91735851 GCGGGTTACG
Statistics
Matches: 114, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 70 0.61
47 32 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:91735831 original size:93 final size:93
Alignment explanation
Indices: 91735672--91735842 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
91735662 GGATGGTTGA
* * *
91735672 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91735737 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
91735765 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91735830 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
91735843 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91751491 original size:31 final size:32
Alignment explanation
Indices: 91751441--91751500 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
91751431 TTAAATTTGA
*
91751441 AATTTAATTATTACATTTCA-ATTTTTAACAT
1 AATTTAATTATTACATTTCATATTATTAACAT
*
91751472 AATTTAATT-TTATATTTTCATATTATTAA
1 AATTTAATTATTACA-TTTCATATTATTAA
91751501 TTAATCCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 4 0.16
31 14 0.56
32 7 0.28
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (32 bp):
AATTTAATTATTACATTTCATATTATTAACAT
Found at i:91753560 original size:63 final size:62
Alignment explanation
Indices: 91753456--91753583 Score: 211
Period size: 63 Copynumber: 2.0 Consensus size: 62
91753446 AAAGTTGTTT
* * *
91753456 TAGGGCAGCTCTTACTTGGGTAACCAGACAAATTAGGTAATTAAGTTTGTTTCATTGTTCTTG
1 TAGGCCAGCTCTTAATTGGGTAACCACACAAATTAGGTAATTAAGTTTG-TTCATTGTTCTTG
*
91753519 TAGGCCAGCTCTTAATTGGGTAACCACACAAATTAGGTAATTAAGTTTGTTCATTGTTTTTG
1 TAGGCCAGCTCTTAATTGGGTAACCACACAAATTAGGTAATTAAGTTTGTTCATTGTTCTTG
91753581 TAG
1 TAG
91753584 TCTCCCACAT
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
62 15 0.25
63 46 0.75
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (62 bp):
TAGGCCAGCTCTTAATTGGGTAACCACACAAATTAGGTAATTAAGTTTGTTCATTGTTCTTG
Found at i:91763949 original size:30 final size:33
Alignment explanation
Indices: 91763892--91763952 Score: 92
Period size: 30 Copynumber: 1.9 Consensus size: 33
91763882 GCCGTATGAT
*
91763892 CCACACGGGCCAAGGCCGATCTGGGCATGTGGG
1 CCACACGGGCCAAGGCCGATATGGGCATGTGGG
91763925 CCACACGGG-CAA-GCC-ATATGGGCATGTG
1 CCACACGGGCCAAGGCCGATATGGGCATGTG
91763953 AGCCCATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 12 0.44
31 3 0.11
32 3 0.11
33 9 0.33
ACGTcount: A:0.21, C:0.30, G:0.36, T:0.13
Consensus pattern (33 bp):
CCACACGGGCCAAGGCCGATATGGGCATGTGGG
Found at i:91765270 original size:2 final size:2
Alignment explanation
Indices: 91765263--91765300 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
91765253 TGTTGTCCGG
91765263 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91765301 GAATTTAACC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91773594 original size:10 final size:9
Alignment explanation
Indices: 91773570--91773595 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
91773560 TTCGAGGATC
91773570 TCAAAAACA
1 TCAAAAACA
91773579 TCAAAAACA
1 TCAAAAACA
91773588 TCAAAAAC
1 TCAAAAAC
91773596 CAACACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAACA
Found at i:91774647 original size:47 final size:46
Alignment explanation
Indices: 91774593--91774722 Score: 179
Period size: 47 Copynumber: 2.8 Consensus size: 46
91774583 ACAATCGATA
*
91774593 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCCCGG
1 AGTACCTATACCATGGCCC-TAGCCAAATCAAGGTAACTCATCCCGG
* * *
91774640 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AGTACCTATACCATGGCCC-TAGCCAAATCAAGGTAACTCATCCCGG
* *
91774687 AATACCTATACCATGGCTCCTAGCTAAATCAAGGTA
1 AGTACCTATACCATGGC-CCTAGCCAAATCAAGGTA
91774723 TTATTCGCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
47 73 0.97
48 2 0.03
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (46 bp):
AGTACCTATACCATGGCCCTAGCCAAATCAAGGTAACTCATCCCGG
Found at i:91778351 original size:46 final size:46
Alignment explanation
Indices: 91778279--91778479 Score: 189
Period size: 46 Copynumber: 4.4 Consensus size: 46
91778269 GCCATGACCT
91778279 AGACATGGTCTTACACTGG-TTCATCTCGTA-GCCGATGCATGTCCC
1 AGACATGGTCTTACACTGGCTTCATCTCG-AGGCCGATGCATGTCCC
* * *
91778324 AGACAT-GTCTTGCACTGGCTTACATCTCGAGGCCGATACATGTCCT
1 AGACATGGTCTTACACTGGCTT-CATCTCGAGGCCGATGCATGTCCC
* ** * *
91778370 AGACAT-GTCTTACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCC
1 AGACATGGTCTTACACTGGCT-TCATCTCGAGGCCGATG-CATGTCCC
* * * *
91778417 AGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCATGTCCT
1 AGACATGGTCTTACACTGGCT-TCAT-CTCGAGGCCGATGCATGTCCC
*
91778464 AGAGAT-GTCTTACACT
1 AGACATGGTCTTACACT
91778480 AGCTCACAGT
Statistics
Matches: 128, Mismatches: 21, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
44 11 0.09
45 9 0.07
46 59 0.46
47 26 0.20
48 22 0.17
49 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (46 bp):
AGACATGGTCTTACACTGGCTTCATCTCGAGGCCGATGCATGTCCC
Found at i:91778460 original size:94 final size:92
Alignment explanation
Indices: 91778309--91778484 Score: 248
Period size: 94 Copynumber: 1.9 Consensus size: 92
91778299 TCATCTCGTA
* *
91778309 GCCGATGCATGTCCCAGACATGTCTTGCACTGGCTTACATCTCGAGGCCGATACATGTCCTAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATACATGTCCTAGAC
91778374 ATGTCTTACACTAGCTCTTGTCTCAAT
66 ATGTCTTACACTAGCTCTTGTCTCAAT
* * *
91778401 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTGATGCATGTCCT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCGATACATGTCCT
*
91778464 AGAGATGTCTTACACTAGCTC
62 AGACATGTCTTACACTAGCTC
91778485 ACAGTAACCC
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
92 7 0.09
93 14 0.19
94 51 0.69
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATACATGTCCTAGAC
ATGTCTTACACTAGCTCTTGTCTCAAT
Found at i:91791587 original size:6 final size:6
Alignment explanation
Indices: 91791573--91791628 Score: 103
Period size: 6 Copynumber: 9.3 Consensus size: 6
91791563 TATCAACTAC
*
91791573 ATCTTT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT
91791621 ATCTAT AT
1 ATCTAT AT
91791629 ACATACACTC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (6 bp):
ATCTAT
Found at i:91792466 original size:24 final size:25
Alignment explanation
Indices: 91792437--91792494 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 25
91792427 ATTCCATATC
91792437 ACATTC-ACCTCAATTAACTACTAA
1 ACATTCTACCTCAATTAACTACTAA
91792461 ACATTCCTTGACCTCAATTAACTACTAA
1 ACATT-C-T-ACCTCAATTAACTACTAA
91792489 ACATTC
1 ACATTC
91792495 CTTGATTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 5 0.17
25 1 0.03
27 1 0.03
28 23 0.77
ACGTcount: A:0.38, C:0.29, G:0.02, T:0.31
Consensus pattern (25 bp):
ACATTCTACCTCAATTAACTACTAA
Found at i:91792483 original size:28 final size:28
Alignment explanation
Indices: 91792443--91792499 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
91792433 TATCACATTC
91792443 ACCTCAATTAACTACTAAACATTCCTTG
1 ACCTCAATTAACTACTAAACATTCCTTG
91792471 ACCTCAATTAACTACTAAACATTCCTTG
1 ACCTCAATTAACTACTAAACATTCCTTG
91792499 A
1 A
91792500 TTAATTCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.28, G:0.04, T:0.32
Consensus pattern (28 bp):
ACCTCAATTAACTACTAAACATTCCTTG
Found at i:91805167 original size:34 final size:34
Alignment explanation
Indices: 91805124--91805193 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
91805114 AAGTTGTCAT
* *
91805124 CAAGCTAACTAAACAAGTCATTCAGTTATCTAAA
1 CAAGCTAACTAAACAAGTCATTCAATTACCTAAA
91805158 CAAGCTAACTAAACAAGTCATTCAATTACCTAAA
1 CAAGCTAACTAAACAAGTCATTCAATTACCTAAA
91805192 CA
1 CA
91805194 CATCAAGCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.46, C:0.23, G:0.07, T:0.24
Consensus pattern (34 bp):
CAAGCTAACTAAACAAGTCATTCAATTACCTAAA
Found at i:91814916 original size:48 final size:48
Alignment explanation
Indices: 91814860--91814958 Score: 180
Period size: 48 Copynumber: 2.1 Consensus size: 48
91814850 TACTTTTACA
91814860 AGTACGTCCTCTATAATACCCCTAGGATATTTAACAGATCAATTAGCT
1 AGTACGTCCTCTATAATACCCCTAGGATATTTAACAGATCAATTAGCT
* *
91814908 AGTACGTCCTTTATAATACCCTTAGGATATTTAACAGATCAATTAGCT
1 AGTACGTCCTCTATAATACCCCTAGGATATTTAACAGATCAATTAGCT
91814956 AGT
1 AGT
91814959 TGAATACTCA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (48 bp):
AGTACGTCCTCTATAATACCCCTAGGATATTTAACAGATCAATTAGCT
Found at i:91820407 original size:21 final size:20
Alignment explanation
Indices: 91820378--91820417 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
91820368 CTTTGACATA
91820378 GGGCACACGCCCGTGTGGAT
1 GGGCACACGCCCGTGTGGAT
*
91820398 GGGCAACACGCTCGTGTGGA
1 GGGC-ACACGCCCGTGTGGA
91820418 ACTTGAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.17, C:0.28, G:0.40, T:0.15
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAT
Found at i:91821855 original size:93 final size:93
Alignment explanation
Indices: 91821743--91821914 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91821733 CGCCCATAAG
* *
91821743 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91821808 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
91821836 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91821901 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
91821915 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91821911 original size:46 final size:46
Alignment explanation
Indices: 91821736--91821911 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
91821726 TGTAACCCGC
* * *
91821736 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
91821782 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
91821832 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91821875 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
91821912 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91827827 original size:27 final size:27
Alignment explanation
Indices: 91827792--91827859 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
91827782 AAACTTGTAC
*
91827792 AGCACTAAGTGTGC-AGTTTGATCATGT
1 AGCACTAAGTGTGCGAG-TTGATCATAT
*
91827819 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATCATAT
91827846 AGCACT-AGTGTGCG
1 AGCACTAAGTGTGCG
91827860 GACTCACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 8 0.21
27 28 0.74
28 2 0.05
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATCATAT
Found at i:91832517 original size:93 final size:93
Alignment explanation
Indices: 91832405--91832576 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91832395 CGCCCATAAG
* *
91832405 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91832470 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
91832498 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91832563 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
91832577 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91832573 original size:46 final size:46
Alignment explanation
Indices: 91832398--91832573 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
91832388 TGTAACCCGC
* * *
91832398 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
91832444 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
91832494 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91832537 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
91832574 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91839821 original size:96 final size:96
Alignment explanation
Indices: 91839656--91840051 Score: 415
Period size: 96 Copynumber: 4.1 Consensus size: 96
91839646 ATTGAATGGT
* * *
91839656 AACATGGCATC-AGCCTCGATATGTGTCAGTGTAAGACCAAGTCTGGGACATGCCATCGGCACCG
1 AACATGGCATCGA-CATCGATATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCG
* *
91839720 ATTTATGAGAGTTAGTGTGAGACCATGTTTGG
65 ATTTATGAGAGCTAGTGTAAGACCATGTTTGG
* * ** * * *
91839752 GACATGGCATCGACCTCGATATGTGTCAGTGTAAGACCATGTCTAAGACATGACATCGGCACTGG
1 AACATGGCATCGACATCGATATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGA
* *
91839817 TTTATGAGAGCCAGTGTAAGAACATGTTTGG
66 TTTATGAGAGCTAGTGTAAGACCATGTTTGG
* * * * * * * *
91839848 AACATGGCATTGGCATTGTTATGTGAGCTAGTGTAAGAGCATGTCTGGGATATGGCATCAGC-CT
1 AACATGGCATCGACATCGATATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-
*
91839912 C-A-ATAT-ACGAGCTAGTGTAAGACCATGTTTGG
63 CGATTTATGA-GAGCTAGTGTAAGACCATGTTTGG
* ** * * *
91839944 AACTTGGCATCGGTATTGTTATATGTGTCATTGTAAGACCATGTCTGGGCCATGGCATCGGCACC
1 AACATGGCATCGACATCG--ATATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACC
*
91840009 GATGTATGAGAGCTAGTGTAAGACCATGTTTGG
64 GATTTATGAGAGCTAGTGTAAGACCATGTTTGG
*
91840042 GACATGGCAT
1 AACATGGCAT
91840052 TGGCATTTTA
Statistics
Matches: 247, Mismatches: 42, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
95 1 0.00
96 171 0.69
97 6 0.02
98 68 0.28
99 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (96 bp):
AACATGGCATCGACATCGATATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGA
TTTATGAGAGCTAGTGTAAGACCATGTTTGG
Found at i:91839891 original size:48 final size:48
Alignment explanation
Indices: 91839683--91840058 Score: 267
Period size: 48 Copynumber: 7.8 Consensus size: 48
91839673 GATATGTGTC
* * * ** *
91839683 AGTGTAAGACCAAGTCTGGGACATGCCATCGGCACCGATTTATGAGAGTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG--TTATGAGAGCT
* * * * * * *
91839733 AGTGTGAGACCATGTTTGGGACATGGCATCGACCTCGATATGTG-TC-
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGAGAGCT
* ** * * *
91839779 AGTGTAAGACCATGTCTAAGACATGACATCGGCACTGGTTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TTG-TTATGAGAGCT
* * * *
91839829 AGTGTAAGAACATGTTTGGAACATGGCATTGGCATTGTTATGTGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGAGAGCT
* * * * * ***
91839877 AGTGTAAGAGCATGTCTGGGATATGGCATCAGCCTCAATAT-ACGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGA-GAGCT
* * * *
91839925 AGTGTAAGACCATGTTTGGAACTTGGCATCGGTATTGTTAT-ATGTG-T
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGA-GAGCT
* * * **
91839972 CATTGTAAGACCATGTCTGGGCCATGGCATCGGCACCGATGTATGAGAGCT
1 -AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG-T-TATGAGAGCT
*
91840023 AGTGTAAGACCATGTTTGGGACATGGCATTGGCATT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATT
91840059 TTACCTTTTT
Statistics
Matches: 245, Mismatches: 71, Indels: 20
0.73 0.21 0.06
Matches are distributed among these distances:
46 27 0.11
47 3 0.01
48 117 0.48
49 4 0.02
50 92 0.38
51 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGAGAGCT
Found at i:91844996 original size:28 final size:27
Alignment explanation
Indices: 91844965--91845141 Score: 144
Period size: 28 Copynumber: 6.3 Consensus size: 27
91844955 TTCCTTTATG
91844965 GAGGTTTTCCACAAAGGCATTACTTTCA
1 GAGGTTTTCCACAAAGGC-TTACTTTCA
* * *
91844993 GAGGTTTTCCACAAATGCTTTTCGTTAT-G
1 GAGGTTTTCCACAAAGGC-TTAC-TT-TCA
*
91845022 GAGGTTTTCCATAAAGGCTTACCTTTCA
1 GAGGTTTTCCACAAAGGCTTA-CTTTCA
*
91845050 GAGGTTTGCCACAAAGGC-TATCTTTTGCA
1 GAGGTTTTCCACAAAGGCTTA-C-TTT-CA
*
91845079 GAGG-TTTCCACAAAGGCTTTCCTTTCA
1 GAGGTTTTCCACAAAGGC-TTACTTTCA
* * * *
91845106 GAGGATCTCCACAAAGGTTTTCTTTTGCA
1 GAGGTTTTCCACAAAGGCTTAC-TTT-CA
91845135 GAGGTTT
1 GAGGTTT
91845142 GTCATAAAGA
Statistics
Matches: 120, Mismatches: 18, Indels: 21
0.75 0.11 0.13
Matches are distributed among these distances:
27 13 0.11
28 72 0.60
29 33 0.28
30 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GAGGTTTTCCACAAAGGCTTACTTTCA
Found at i:91845091 original size:113 final size:113
Alignment explanation
Indices: 91844965--91845192 Score: 282
Period size: 113 Copynumber: 2.0 Consensus size: 113
91844955 TTCCTTTATG
* *
91844965 GAGGTTTTCCACAAAGGCATTACTTTCAGAGGTTTTCCACAAATGCTTTTCGTTATG-GAGGTTT
1 GAGGTTTTCCACAAAGGCATTACTTTCAGAGGATCTCCACAAA-GCTTTTC-TTATGAGAGGTTT
* ** * *
91845029 -TCCATAAAGGCTTACCTTTCAGAGGTTTGCCACAAAGGCTATCTTTTGCA
64 GT-CATAAAGACTTACCTTAAAAAGGTTTGCCACAAAGGCTATCCTTTGCA
* * * *
91845079 GAGG-TTTCCACAAAGGCTTTCCTTTCAGAGGATCTCCACAAAGGTTTTCTTTTGCAGAGGTTTG
1 GAGGTTTTCCACAAAGGCATTACTTTCAGAGGATCTCCACAAAGCTTTTCTTATG-AGAGGTTTG
* *
91845143 TCATAAAGACTTTCCTTAAAAAGGTTTGCCACAAAGGCTTTCCTTTGCA
65 TCATAAAGACTTACCTTAAAAAGGTTTGCCACAAAGGCTATCCTTTGCA
91845192 G
1 G
91845193 TTATGATCTT
Statistics
Matches: 98, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
111 4 0.04
112 6 0.06
113 83 0.85
114 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (113 bp):
GAGGTTTTCCACAAAGGCATTACTTTCAGAGGATCTCCACAAAGCTTTTCTTATGAGAGGTTTGT
CATAAAGACTTACCTTAAAAAGGTTTGCCACAAAGGCTATCCTTTGCA
Found at i:91845118 original size:56 final size:56
Alignment explanation
Indices: 91844965--91845192 Score: 230
Period size: 57 Copynumber: 4.0 Consensus size: 56
91844955 TTCCTTTATG
* * * *
91844965 GAGGTTTTCCACAAAGGCATTACTTTCAGAGGTTTTCCACAAATGCTTTTCGTTATG--
1 GAGGTTTTCCACAAAGGCTTTCCTTTCAGAGG-TTTCCACAAAGGC-TTTC-TTTTGCA
* * *
91845022 GAGGTTTTCCATAAAGGCTTACCTTTCAGAGGTTTGCCACAAAGGCTATCTTTTGCA
1 GAGGTTTTCCACAAAGGCTTTCCTTTCAGAGGTTT-CCACAAAGGCTTTCTTTTGCA
* *
91845079 GAGG-TTTCCACAAAGGCTTTCCTTTCAGAGGATCTCCACAAAGGTTTTCTTTTGCA
1 GAGGTTTTCCACAAAGGCTTTCCTTTCAGAGG-TTTCCACAAAGGCTTTCTTTTGCA
* * ** * *
91845135 GAGGTTTGT-CATAAAGACTTTCCTTAAAAAGGTTTGCCACAAAGGCTTTCCTTTGCA
1 GAGGTTT-TCCACAAAGGCTTTCCTTTCAGAGGTTT-CCACAAAGGCTTTCTTTTGCA
91845192 G
1 G
91845193 TTATGATCTT
Statistics
Matches: 144, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
55 4 0.03
56 56 0.39
57 83 0.58
58 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (56 bp):
GAGGTTTTCCACAAAGGCTTTCCTTTCAGAGGTTTCCACAAAGGCTTTCTTTTGCA
Found at i:91848037 original size:85 final size:84
Alignment explanation
Indices: 91847908--91848210 Score: 317
Period size: 85 Copynumber: 3.6 Consensus size: 84
91847898 ATTCCAGAGA
* *
91847908 TTGCCAC-AAGGCTTTCTTTTTCAGAGGTT-GCCACAAATGCTTTCCTTTTAGAGGTTTTCCACA
1 TTGCCACAAAGGCTTTC-CTTTCAGAGGTTCGCCACAAAGGCTTTCCTTTTAGAGGTTTTCCACA
*
91847971 AAGGCTTTCATTTAAGAGGT
65 AAGGCTTTCTTTTAAGAGGT
* * * * * * ** *
91847991 TTGCCACAAAGGCCTACCTTTACAAAGGTTTGCCACAAAGGTTTTCCTTTCAGAGGTTCGCCATA
1 TTGCCACAAAGGCTTTCCTTT-CAGAGGTTCGCCACAAAGGCTTTCCTTTTAGAGGTTTTCCACA
*
91848056 AAGGATTTCTTTTACAGAGGT
65 AAGGCTTTCTTTTA-AGAGGT
* * * * * *
91848077 TTGCCACAAAAGCTTTCCTTTTAGAGGTTCACCATAAAGGTTTTCC-TTTACGGAGTTTTTCCAC
1 TTGCCACAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTTTCCTTTTA--GAGGTTTTCCAC
*
91848141 AGAGGCTTTCCTTTTAA-AGGT
64 AAAGGCTTT-CTTTTAAGAGGT
* * *
91848162 TTGCCATAAAGGTTTTCCTTTCAGAGGCTCGCCACAAAGGCTTTCCTTT
1 TTGCCACAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTTTCCTTT
91848211 CTCTAGGGCG
Statistics
Matches: 177, Mismatches: 35, Indels: 13
0.79 0.16 0.06
Matches are distributed among these distances:
83 10 0.06
84 17 0.10
85 102 0.58
86 42 0.24
87 6 0.03
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (84 bp):
TTGCCACAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTTTCCTTTTAGAGGTTTTCCACAA
AGGCTTTCTTTTAAGAGGT
Found at i:91848046 original size:57 final size:57
Alignment explanation
Indices: 91847908--91848211 Score: 310
Period size: 57 Copynumber: 5.4 Consensus size: 57
91847898 ATTCCAGAGA
* * * *
91847908 TTGCCAC-AAGGCTTTCTTTTTCAGAGG-TTGCCACAAATGCTTTCCTTT-TAGAGGT
1 TTGCCACAAAGGCTTTC-CTTTCAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
* * * * * * *
91847963 TTTCCACAAAGGCTTTCATTTAAGAGGTTTGCCACAAAGGCCTACCTTTACAAAGGT
1 TTGCCACAAAGGCTTTCCTTTCAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
* * * *
91848020 TTGCCACAAAGGTTTTCCTTTCAGAGGTTCGCCATAAAGGATTTCTTTTACAGAGGT
1 TTGCCACAAAGGCTTTCCTTTCAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
* * ** * * *
91848077 TTGCCACAAAAGCTTTCCTTTTAGAGGTTCACCATAAAGGTTTTCCTTTACGGAGTT
1 TTGCCACAAAGGCTTTCCTTTCAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
* * * * * *
91848134 TTTCCACAGAGGCTTTCCTTTTAAAGGTTTGCCATAAAGGTTTTCCTTT-CAGAGGC
1 TTGCCACAAAGGCTTTCCTTTCAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
*
91848190 TCGCCACAAAGGCTTTCCTTTC
1 TTGCCACAAAGGCTTTCCTTTC
91848212 TCTAGGGCGT
Statistics
Matches: 206, Mismatches: 40, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
55 14 0.07
56 49 0.24
57 143 0.69
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (57 bp):
TTGCCACAAAGGCTTTCCTTTCAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
Found at i:91848211 original size:28 final size:28
Alignment explanation
Indices: 91847908--91848211 Score: 288
Period size: 28 Copynumber: 10.8 Consensus size: 28
91847898 ATTCCAGAGA
*
91847908 TTGCCAC-AAGGCTTTCTTTTTCAGAGG-
1 TTGCCACAAAGGCTTTC-CTTTCAGAGGT
* *
91847935 TTGCCACAAATGCTTTCCTTTTAGAGGT
1 TTGCCACAAAGGCTTTCCTTTCAGAGGT
* * *
91847963 TTTCCACAAAGGCTTTCATTTAAGAGGT
1 TTGCCACAAAGGCTTTCCTTTCAGAGGT
* * *
91847991 TTGCCACAAAGGCCTACCTTTACAAAGGT
1 TTGCCACAAAGGCTTTCCTTT-CAGAGGT
*
91848020 TTGCCACAAAGGTTTTCCTTTCAGAGGT
1 TTGCCACAAAGGCTTTCCTTTCAGAGGT
* * * *
91848048 TCGCCATAAAGGATTTCTTTTACAGAGGT
1 TTGCCACAAAGGCTTTCCTTT-CAGAGGT
* *
91848077 TTGCCACAAAAGCTTTCCTTTTAGAGGT
1 TTGCCACAAAGGCTTTCCTTTCAGAGGT
** * * * *
91848105 TCACCATAAAGGTTTTCCTTTACGGAGTT
1 TTGCCACAAAGGCTTTCCTTT-CAGAGGT
* * * *
91848134 TTTCCACAGAGGCTTTCCTTTTAAAGGT
1 TTGCCACAAAGGCTTTCCTTTCAGAGGT
* * *
91848162 TTGCCATAAAGGTTTTCCTTTCAGAGGC
1 TTGCCACAAAGGCTTTCCTTTCAGAGGT
*
91848190 TCGCCACAAAGGCTTTCCTTTC
1 TTGCCACAAAGGCTTTCCTTTC
91848212 TCTAGGGCGT
Statistics
Matches: 218, Mismatches: 54, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
27 15 0.07
28 137 0.63
29 66 0.30
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (28 bp):
TTGCCACAAAGGCTTTCCTTTCAGAGGT
Found at i:91848996 original size:22 final size:22
Alignment explanation
Indices: 91848980--91849029 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
91848970 ACACCACTGA
91848980 ACCACCATACCACCACCCTAAC
1 ACCACCATACCACCACCCTAAC
* * **
91849002 ACCACTATATCACCACCCTTGC
1 ACCACCATACCACCACCCTAAC
91849024 ACCACC
1 ACCACC
91849030 TTGAAATACC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.32, C:0.52, G:0.02, T:0.14
Consensus pattern (22 bp):
ACCACCATACCACCACCCTAAC
Found at i:91849132 original size:35 final size:35
Alignment explanation
Indices: 91849060--91849133 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
91849050 ATAACTCATT
* *
91849060 TTCTCTTTTCTTTTCTTCATTTTGAGAATAAACTA
1 TTCTCTTTTCTTTTCTTCATTTTCAGAAAAAACTA
* * *
91849095 TTCTCTTTTCTTTTTTTCTTTTTCA-AAAAATATTA
1 TTCTCTTTTCTTTTCTTCATTTTCAGAAAAA-ACTA
91849130 TTCT
1 TTCT
91849134 TACTACTCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
34 4 0.12
35 29 0.88
ACGTcount: A:0.22, C:0.16, G:0.03, T:0.59
Consensus pattern (35 bp):
TTCTCTTTTCTTTTCTTCATTTTCAGAAAAAACTA
Found at i:91860431 original size:13 final size:13
Alignment explanation
Indices: 91860413--91860437 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91860403 TTCAACAAAA
91860413 ACTATATTAATTG
1 ACTATATTAATTG
91860426 ACTATATTAATT
1 ACTATATTAATT
91860438 ATAAATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (13 bp):
ACTATATTAATTG
Found at i:91867836 original size:16 final size:17
Alignment explanation
Indices: 91867810--91867846 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
91867800 GTTTAATCGG
*
91867810 TTTAGTTGTTTGTTTAT
1 TTTAGTTGTTTATTTAT
91867827 TTTA-TTGTTTATTTAT
1 TTTAGTTGTTTATTTAT
91867843 TTTA
1 TTTA
91867847 ATTATTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.73
Consensus pattern (17 bp):
TTTAGTTGTTTATTTAT
Found at i:91873443 original size:17 final size:17
Alignment explanation
Indices: 91873417--91873450 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
91873407 ATACTTTATA
*
91873417 TTTCAAGTTTTCCATAT
1 TTTCAAGTTTTACATAT
*
91873434 TTTCATGTTTTACATAT
1 TTTCAAGTTTTACATAT
91873451 ACGTGAAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTCAAGTTTTACATAT
Found at i:91873691 original size:105 final size:105
Alignment explanation
Indices: 91873509--91873715 Score: 414
Period size: 105 Copynumber: 2.0 Consensus size: 105
91873499 AACAACTGGC
91873509 ATTAGACGAAAAGAGGGATCTTATAACAATAAAAGCTTGCTAACACTAGGAACTGTGAGTCAAAA
1 ATTAGACGAAAAGAGGGATCTTATAACAATAAAAGCTTGCTAACACTAGGAACTGTGAGTCAAAA
91873574 TTTTCCATTTCTATTCTAGTCTGCAATTAAGTTCTTTGTT
66 TTTTCCATTTCTATTCTAGTCTGCAATTAAGTTCTTTGTT
91873614 ATTAGACGAAAAGAGGGATCTTATAACAATAAAAGCTTGCTAACACTAGGAACTGTGAGTCAAAA
1 ATTAGACGAAAAGAGGGATCTTATAACAATAAAAGCTTGCTAACACTAGGAACTGTGAGTCAAAA
91873679 TTTTCCATTTCTATTCTAGTCTGCAATTAAGTTCTTT
66 TTTTCCATTTCTATTCTAGTCTGCAATTAAGTTCTTT
91873716 CTCTTTAATC
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 102 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (105 bp):
ATTAGACGAAAAGAGGGATCTTATAACAATAAAAGCTTGCTAACACTAGGAACTGTGAGTCAAAA
TTTTCCATTTCTATTCTAGTCTGCAATTAAGTTCTTTGTT
Found at i:91875031 original size:13 final size:13
Alignment explanation
Indices: 91875015--91875041 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91875005 ATATTCTCAG
91875015 AGTATAATGACAA
1 AGTATAATGACAA
91875028 AGTATAATGACAA
1 AGTATAATGACAA
91875041 A
1 A
91875042 TGTAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (13 bp):
AGTATAATGACAA
Found at i:91878624 original size:17 final size:17
Alignment explanation
Indices: 91878604--91878636 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
91878594 ATTAAGAATG
91878604 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
91878621 TTATTAAATTATATTT
1 TTATTAAATTATATTT
91878637 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:91878642 original size:55 final size:58
Alignment explanation
Indices: 91878581--91878714 Score: 161
Period size: 58 Copynumber: 2.4 Consensus size: 58
91878571 TTAATTCATA
* *
91878581 TAATAATAATTATATTAAGAATGTTATTAAA-T-TATA-T-TTTTTATTAAATTATATT
1 TAATAATAATTATATTAA-AATATGATTAAACTATATATTATTTTTATTAAATTATATT
* * * *
91878636 TAATAATAATTATGTTAAAATATGGTTAAACTATTTATTATTTTTATTAAATTATTTT
1 TAATAATAATTATATTAAAATATGATTAAACTATATATTATTTTTATTAAATTATATT
91878694 TAATAATAATCT-TATTAAAAT
1 TAATAATAAT-TATATTAAAAT
91878715 TTAATAGCAA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
54 9 0.13
55 18 0.27
56 3 0.04
57 1 0.01
58 35 0.52
59 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (58 bp):
TAATAATAATTATATTAAAATATGATTAAACTATATATTATTTTTATTAAATTATATT
Found at i:91878904 original size:16 final size:16
Alignment explanation
Indices: 91878883--91878937 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
91878873 TGAATAACTT
91878883 ATTACAGCTCTATTTC
1 ATTACAGCTCTATTTC
91878899 ATTACAGCTCTA-TTC
1 ATTACAGCTCTATTTC
* * *
91878914 AATTACAACCCTATTCC
1 -ATTACAGCTCTATTTC
91878931 ATTACAG
1 ATTACAG
91878938 TGAACCAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 3 0.09
16 28 0.85
17 2 0.06
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTTC
Found at i:91882656 original size:98 final size:98
Alignment explanation
Indices: 91882538--91882747 Score: 257
Period size: 98 Copynumber: 2.1 Consensus size: 98
91882528 TGTTTCTTAC
* *
91882538 TGGTGGAGCCATTCTAAATGGCGCCACCACTTTATTACCAAG-ATTTTTTT-AATGTGGTTTTTT
1 TGGTGGAGCCATTATAAATGGCGCCACCACTGTATT-CCAAGTATTTTTTTAAATGT-GTTTTTT
*
91882601 TTTAATTTAAAAATTTTTAGAAATAATATTTTA-TT
64 TTTAATTTAAAAA-TTTTAAAAATAATATTTTATTT
* ** * *
91882636 TGGTGGAGCCA-TATAGAATGGCGCCACCAGTGTATTGTATGTTTTTTTTTTAAATGTGTTTTTT
1 TGGTGGAGCCATTATA-AATGGCGCCACCACTGTATTCCAAG-TATTTTTTTAAATGTGTTTTTT
*
91882700 TTTAATTTAAAAATTTTAAAAATGATATTTTATTT
64 TTTAATTTAAAAATTTTAAAAATAATATTTTATTT
*
91882735 TGGTGGAGTCATT
1 TGGTGGAGCCATT
91882748 CTTTATGGCT
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
97 5 0.05
98 46 0.48
99 39 0.41
100 6 0.06
ACGTcount: A:0.28, C:0.09, G:0.16, T:0.47
Consensus pattern (98 bp):
TGGTGGAGCCATTATAAATGGCGCCACCACTGTATTCCAAGTATTTTTTTAAATGTGTTTTTTTT
TAATTTAAAAATTTTAAAAATAATATTTTATTT
Found at i:91883675 original size:3 final size:3
Alignment explanation
Indices: 91883662--91883712 Score: 93
Period size: 3 Copynumber: 16.7 Consensus size: 3
91883652 TAAAAACACA
91883662 AAT ACAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91883708 AAT AA
1 AAT AA
91883713 CAACAACAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:91884939 original size:22 final size:22
Alignment explanation
Indices: 91884903--91884944 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
91884893 TGACCTAATT
** *
91884903 AATATAATTTTAATAGTTTAAA
1 AATATAATTAGAATAATTTAAA
91884925 AATATAATTAGAATAATTTA
1 AATATAATTAGAATAATTTA
91884945 TAACTTAGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (22 bp):
AATATAATTAGAATAATTTAAA
Found at i:91885395 original size:19 final size:18
Alignment explanation
Indices: 91885372--91885433 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 18
91885362 TAAAAGCAAT
91885372 AAAAATTATTAAATATTA
1 AAAAATTATTAAATATTA
*
91885390 ATAAAA-AATTCAAATATTA
1 A-AAAATTATT-AAATATTA
*
91885409 AAAAATTTATTAAAAATTA
1 AAAAA-TTATTAAATATTA
91885428 GAAAAA
1 -AAAAA
91885434 ATATAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 8 0.22
19 20 0.56
20 8 0.22
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
AAAAATTATTAAATATTA
Found at i:91885452 original size:19 final size:19
Alignment explanation
Indices: 91885420--91885508 Score: 54
Period size: 19 Copynumber: 4.6 Consensus size: 19
91885410 AAAATTTATT
*
91885420 AAAAATTAGAAAAAATATAA
1 AAAAATT-GTAAAAATATAA
* * *
91885440 AAAAATTGTAAAATTCTAT
1 AAAAATTGTAAAAATATAA
* * *
91885459 AAAGATTGTCAAAGAT-TAT
1 AAAAATTGT-AAAAATATAA
* * *
91885478 AAAATTTATAGAAATATAA
1 AAAAATTGTAAAAATATAA
*
91885497 AAAAATTATAAA
1 AAAAATTGTAAA
91885509 TTTTTAAAAA
Statistics
Matches: 52, Mismatches: 15, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
18 4 0.08
19 37 0.71
20 11 0.21
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (19 bp):
AAAAATTGTAAAAATATAA
Found at i:91885876 original size:85 final size:87
Alignment explanation
Indices: 91885775--91885942 Score: 232
Period size: 86 Copynumber: 2.0 Consensus size: 87
91885765 ATAAGAGCAG
* * * ** * * *
91885775 GGGCTTAATTG-CTTTTTTGAAAAATTTTGAGGGTCTTTTTGATGTATTTTGAAAGTTCAAGTAC
1 GGGCTTAATTGATTTTTTTGAAAAAATTCGAGGACCTTTTTGATGCATTTTAAAAGTTAAAGTAC
91885839 CCAATTGAGTG-AAAAAATCAA
66 CCAATTGAGTGCAAAAAATCAA
*
91885860 GGGCTTAATTGATTTTTTTGAAAAAATTCGAGGACCTTTTTGATGCATTTTAAAAGTTAAAGTGC
1 GGGCTTAATTGATTTTTTTGAAAAAATTCGAGGACCTTTTTGATGCATTTTAAAAGTTAAAGTAC
*
91885925 TCAATTGAGTGCAAAAAA
66 CCAATTGAGTGCAAAAAA
91885943 ATATGAGGTG
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
85 11 0.15
86 54 0.76
87 6 0.08
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.38
Consensus pattern (87 bp):
GGGCTTAATTGATTTTTTTGAAAAAATTCGAGGACCTTTTTGATGCATTTTAAAAGTTAAAGTAC
CCAATTGAGTGCAAAAAATCAA
Found at i:91886635 original size:19 final size:19
Alignment explanation
Indices: 91886613--91886655 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
91886603 TTTTTTTCTA
*
91886613 AATTTTTATGGTTTTT-AAT
1 AATTTTT-TGATTTTTAAAT
91886632 AATTTTTTGATTTTTAAAT
1 AATTTTTTGATTTTTAAAT
91886651 AATTT
1 AATTT
91886656 CTAATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (19 bp):
AATTTTTTGATTTTTAAAT
Found at i:91886637 original size:18 final size:19
Alignment explanation
Indices: 91886557--91886655 Score: 59
Period size: 20 Copynumber: 5.4 Consensus size: 19
91886547 TTAAATAATT
91886557 ATAATTTTTATGATTTTTAA
1 ATAA-TTTTATGATTTTTAA
* *
91886577 TTAATTTCTTAT-AATTTTAA
1 ATAA-TT-TTATGATTTTTAA
* *
91886597 AAAATCTTT-T--TTTCTAA
1 ATAAT-TTTATGATTTTTAA
*
91886614 AT--TTTTATGGTTTTT-A
1 ATAATTTTATGATTTTTAA
*
91886630 ATAATTTTTTGATTTTTAA
1 ATAATTTTATGATTTTTAA
91886649 ATAATTT
1 ATAATTT
91886656 CTAATAAATT
Statistics
Matches: 61, Mismatches: 10, Indels: 17
0.69 0.11 0.19
Matches are distributed among these distances:
14 3 0.05
15 2 0.03
16 3 0.05
17 10 0.16
18 12 0.20
19 11 0.18
20 16 0.26
21 4 0.07
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (19 bp):
ATAATTTTATGATTTTTAA
Found at i:91893707 original size:29 final size:29
Alignment explanation
Indices: 91893645--91893747 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
91893635 GTGACGAGAT
* * *
91893645 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
91893674 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
91893703 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
91893732 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91893748 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:91901726 original size:29 final size:29
Alignment explanation
Indices: 91901664--91901766 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
91901654 GTGACGAGAT
* * *
91901664 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
91901693 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
91901722 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
91901751 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91901767 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:91903411 original size:29 final size:30
Alignment explanation
Indices: 91903371--91903435 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
91903361 CAGTCCACAT
* *
91903371 ATATTT-CATAAAAGTTTCAAAAATAT-ATAA
1 ATATTTAC-TAAAA-TTTAAAAAAAATCATAA
91903401 A-ATTTACTAAAATTTAAAAAAAATCATAA
1 ATATTTACTAAAATTTAAAAAAAATCATAA
91903430 ATATTT
1 ATATTT
91903436 TGAAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
28 10 0.33
29 14 0.47
30 6 0.20
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (30 bp):
ATATTTACTAAAATTTAAAAAAAATCATAA
Found at i:91903435 original size:20 final size:21
Alignment explanation
Indices: 91903408--91903446 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
91903398 TAAAATTTAC
91903408 TAAAA-TTT-AAAAAAAATCA
1 TAAAATTTTGAAAAAAAATCA
91903427 TAAATATTTTGAAAAAAAAT
1 TAAA-ATTTTGAAAAAAAAT
91903447 TATTCACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 1 0.06
21 3 0.18
22 9 0.53
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (21 bp):
TAAAATTTTGAAAAAAAATCA
Found at i:91907844 original size:22 final size:22
Alignment explanation
Indices: 91907819--91907865 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
91907809 GAATTTTGTG
91907819 TTTACATTTTGAGGG-TTATTAT
1 TTTACATTTTG-GGGTTTATTAT
*
91907841 TTTAGATTTTGGGGTTTATTAT
1 TTTACATTTTGGGGTTTATTAT
91907863 TTT
1 TTT
91907866 GTGTTTAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.19, C:0.02, G:0.19, T:0.60
Consensus pattern (22 bp):
TTTACATTTTGGGGTTTATTAT
Found at i:91917842 original size:21 final size:21
Alignment explanation
Indices: 91917817--91917860 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
91917807 CGTTCTCTCA
91917817 CACCACCAGAGTCAAGACACT
1 CACCACCAGAGTCAAGACACT
* *
91917838 CACCACCAGATTCAGGACACT
1 CACCACCAGAGTCAAGACACT
91917859 CA
1 CA
91917861 TCACACTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.39, G:0.14, T:0.11
Consensus pattern (21 bp):
CACCACCAGAGTCAAGACACT
Found at i:91924603 original size:14 final size:15
Alignment explanation
Indices: 91924575--91924603 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91924565 ATACCTAATT
91924575 CATCCCAATTCCAAA
1 CATCCCAATTCCAAA
91924590 CATCCCAA-TCCAAA
1 CATCCCAATTCCAAA
91924604 TTACAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.17
Consensus pattern (15 bp):
CATCCCAATTCCAAA
Found at i:91927454 original size:47 final size:47
Alignment explanation
Indices: 91927401--91927984 Score: 763
Period size: 47 Copynumber: 12.1 Consensus size: 47
91927391 TTAGGATTTT
91927401 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
***
91927448 AATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCC
*
91927499 AATGTGATGAATGTGAACATGCGTATGTGTGAAAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
* ** * *
91927546 AATGTGATGAATGTGAACCTGTATATATACGCATTATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGT--G--TGATAAGGCCGAATGGCC
* *
91927597 AATGTGATGAATGTGAACATGCTTATGTGTGATAAAGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
* *** *
91927644 AGTGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCC
91927695 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
91927742 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
*** *
91927789 AATGTGATGAATGTGAACCCGTATATATATGCGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCC
*
91927840 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
*
91927887 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATTGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
** * * * * *
91927934 AATAAGATGAATATGAACATGCATATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
91927981 AATG
1 AATG
91927985 CGAAATGTGT
Statistics
Matches: 473, Mismatches: 48, Indels: 32
0.86 0.09 0.06
Matches are distributed among these distances:
47 300 0.63
48 2 0.00
49 4 0.01
50 2 0.00
51 165 0.35
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.27
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
Found at i:91927511 original size:98 final size:97
Alignment explanation
Indices: 91927401--91927984 Score: 817
Period size: 98 Copynumber: 6.0 Consensus size: 97
91927391 TTAGGATTTT
91927401 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
91927466 CTGTATATATATGTGTGATAAGGCCGAATGGCC
66 CTG-ATATATATGTGTGATAAGGCCGAATGGCC
*
91927499 AATGTGATGAATGTGAACATGCGTATGTGTGAAAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* ** *
91927564 CTGTATATATACGCATTATAAGGCCGAATGGCC
66 CTG-ATATATATGTGTGATAAGGCCGAATGGCC
* * *
91927597 AATGTGATGAATGTGAACATGCTTATGTGTGATAAAGCCGAATGGCCAGTGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
*
91927662 CTGTATATATATGCGTGATAAGGCCGAATGGCC
66 CTG-ATATATATGTGTGATAAGGCCGAATGGCC
91927695 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
***
91927759 C--ATGCGTATGTGTGATAAGGCCGAATGGCC
66 CTGATATATATGTGTGATAAGGCCGAATGGCC
*** *
91927789 AATGTGATGAATGTGAACCCGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGT
1 AATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
* *
91927854 GAA-C--ATGTGTATGTGTGATAAGGCCGAATGGCC
62 GAACCTGATATATATGTGTGATAAGGCCGAATGGCC
* ** *
91927887 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATTGCCAATAAGATGAATATGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* * *
91927952 ATG-CATATATGTG-G-TAAGGCCGAATGGCT
66 CTGATATATATGTGTGATAAGGCCGAATGGCC
91927981 AATG
1 AATG
91927985 CGAAATGTGT
Statistics
Matches: 442, Mismatches: 37, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
94 98 0.22
95 1 0.00
96 9 0.02
97 1 0.00
98 333 0.75
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.27
Consensus pattern (97 bp):
AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
CTGATATATATGTGTGATAAGGCCGAATGGCC
Found at i:91927560 original size:145 final size:143
Alignment explanation
Indices: 91927401--91927984 Score: 789
Period size: 145 Copynumber: 4.0 Consensus size: 143
91927391 TTAGGATTTT
91927401 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-
*** * * *
91927466 CTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C-ATGCGTATGTGT
65 C---ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTATACATATGCGT
*
91927529 GAAAAGGCCGAATGGCC
127 GATAAGGCCGAATGGCC
* ** * *
91927546 AATGTGATGAATGTGAACCTGTATATATACGCATTATAAGGCCGAATGGCCAATGTGATGAATGT
1 AATGTGATGAATGTGAACATGCGTATGT--G--TGATAAGGCCGAATGGCCAATGTGATGAATGT
* * * *
91927611 GAACATGCTTATGTGTGATAAAGCCGAATGGCCAGTGTGATGAATGTGAACCTGTATATATATGC
62 GAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC--TATACATATGC
91927676 GTGATAAGGCCGAATGGCC
125 GTGATAAGGCCGAATGGCC
91927695 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
*
91927760 ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGCGTGA
66 ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-CC-TATACATATGCGTGA
91927825 TAAGGCCGAATGGCC
129 TAAGGCCGAATGGCC
*
91927840 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* ** * * ** *
91927905 ATGCGTATGTGTGATAAGGCCGAATTGCCAATAAGATGAATATGAA-C-ATGCATATATGTGGTA
66 ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTATACATATGCGTGATA
*
91927968 AGGCCGAATGGCT
131 AGGCCGAATGGCC
91927981 AATG
1 AATG
91927985 CGAAATGTGT
Statistics
Matches: 396, Mismatches: 34, Indels: 22
0.88 0.08 0.05
Matches are distributed among these distances:
141 27 0.07
143 1 0.00
145 280 0.71
146 3 0.01
147 2 0.01
148 1 0.00
149 82 0.21
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.27
Consensus pattern (143 bp):
AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTATACATATGCGTGATA
AGGCCGAATGGCC
Found at i:91927723 original size:23 final size:23
Alignment explanation
Indices: 91927696--91927770 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
91927686 CGAATGGCCA
91927696 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
91927719 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
91927743 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
91927766 ATGTG
1 ATGTG
91927771 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:91928024 original size:46 final size:46
Alignment explanation
Indices: 91927958--91928048 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
91927948 GAACATGCAT
* *
91927958 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAGGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* *
91928004 ATATGTGGTGAA-GCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGT-AAGGCCAAATGGCTAATGCGAAATATGTATGAGATG
91928049 TGTATATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 38 0.95
47 2 0.05
ACGTcount: A:0.32, C:0.08, G:0.33, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAGGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:91928339 original size:37 final size:37
Alignment explanation
Indices: 91928194--91928338 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
91928184 GGAAATATAT
91928194 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
91928231 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
91928268 TCCTGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
91928305 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
91928339 TCATCTGAGC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:91930766 original size:40 final size:40
Alignment explanation
Indices: 91930722--91930947 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
91930712 GCTACTCGTT
* * *
91930722 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
91930762 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
**
91930802 CAAATGCCTTCGGATCTTAGTTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
91930842 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
91930882 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
91930923 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
91930948 CATCATTCGA
Statistics
Matches: 170, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 13 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:91934646 original size:20 final size:20
Alignment explanation
Indices: 91934613--91934662 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
91934603 TATCGATCTA
* * *
91934613 GTATCGATACATTTCTTAAG
1 GTATCAATATATTTCCTAAG
*
91934633 GTATTAATATATTTCCTAAG
1 GTATCAATATATTTCCTAAG
91934653 GTATCAATAT
1 GTATCAATAT
91934663 TCCTGCTCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (20 bp):
GTATCAATATATTTCCTAAG
Found at i:91939569 original size:40 final size:40
Alignment explanation
Indices: 91939514--91939723 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
91939504 AACATTGGAA
91939514 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
91939554 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
91939594 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
91939634 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
91939673 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
91939714 CTATATCCGG
1 ATATATCCGG
91939724 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:91945033 original size:40 final size:39
Alignment explanation
Indices: 91944868--91945051 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
91944858 AAATTGAATG
* * *
91944868 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
91944908 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
91944948 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
91944988 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
91945027 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
91945052 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:91945076 original size:80 final size:81
Alignment explanation
Indices: 91944908--91945096 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
91944898 GCTGGAAATT
* * * *
91944908 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
91944973 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
91944989 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
91945052 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
91945068 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
91945097 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:91961916 original size:67 final size:67
Alignment explanation
Indices: 91961786--91961941 Score: 181
Period size: 67 Copynumber: 2.3 Consensus size: 67
91961776 CTCGGAATCA
* * * *
91961786 GAAGTCCGCCATGACAATAAATAGGAGATTATACTGTGTAAGACCATATTGGGCTATAGCAACAT
1 GAAGTCCGCCAGGACAATAAACAGGAGATTATACTGTGTAAGACCATAGTGGGCTATAGCAACAA
*
91961851 AT
66 AC
* * *
91961853 GAAGTCCGCCAGGATAATAAACATGG-GATTATATTGTGTAAGAGCATAGTGGGCTAT-GACAAC
1 GAAGTCCGCCAGGACAATAAACA-GGAGATTATACTGTGTAAGACCATAGTGGGCTATAG-CAAC
91961916 AAAC
64 AAAC
** *
91961920 GAAGTCTACTAGGACAATAAAC
1 GAAGTCCGCCAGGACAATAAAC
91961942 CAAGAAGCCC
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
66 1 0.01
67 72 0.96
68 2 0.03
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.23
Consensus pattern (67 bp):
GAAGTCCGCCAGGACAATAAACAGGAGATTATACTGTGTAAGACCATAGTGGGCTATAGCAACAA
AC
Found at i:91966246 original size:29 final size:29
Alignment explanation
Indices: 91966214--91966286 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
91966204 CTTCGAGCTC
*
91966214 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
91966243 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
91966272 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
91966287 ATCTCATCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:91974033 original size:2 final size:2
Alignment explanation
Indices: 91974026--91974058 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
91974016 TCGATCGGAG
*
91974026 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91974059 GAGTACGCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:91974183 original size:29 final size:29
Alignment explanation
Indices: 91974151--91974223 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
91974141 CTTCGAGCTC
*
91974151 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
91974180 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
91974209 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
91974224 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:91976221 original size:33 final size:33
Alignment explanation
Indices: 91976175--91976238 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
91976165 TATCTGCATC
* * *
91976175 TGATACTGATTCTGTATTGGGCTTAGGCCCATT
1 TGATACTGATTCTGGAATGGGCTCAGGCCCATT
91976208 TGATACT-ATTTCTGGAATGGGCTCAGGCCCA
1 TGATACTGA-TTCTGGAATGGGCTCAGGCCCA
91976239 GTCTATTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 1 0.04
33 26 0.96
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.34
Consensus pattern (33 bp):
TGATACTGATTCTGGAATGGGCTCAGGCCCATT
Found at i:91982634 original size:24 final size:23
Alignment explanation
Indices: 91982567--91982641 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 23
91982557 TTTAAGCTTA
91982567 TGTGGCGTATTCTATTTGGCCTT
1 TGTGGCGTATTCTATTTGGCCTT
* *
91982590 TTTGGCGAATTCTA-TTGGCCTT
1 TGTGGCGTATTCTATTTGGCCTT
91982612 TGTGGCGTACTTCTATTTGGCCTT
1 TGTGGCGTA-TTCTATTTGGCCTT
91982636 TGTGGC
1 TGTGGC
91982642 ATAATTTGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
22 15 0.33
23 17 0.37
24 14 0.30
ACGTcount: A:0.09, C:0.19, G:0.27, T:0.45
Consensus pattern (23 bp):
TGTGGCGTATTCTATTTGGCCTT
Found at i:91986871 original size:26 final size:28
Alignment explanation
Indices: 91986817--91986885 Score: 124
Period size: 26 Copynumber: 2.5 Consensus size: 28
91986807 AAATTTGTAC
91986817 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
91986845 AGCACTAAGTGTGC-AG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
91986871 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
91986886 GACTCACTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.60
27 2 0.05
28 14 0.35
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:91990677 original size:15 final size:14
Alignment explanation
Indices: 91990628--91990688 Score: 56
Period size: 13 Copynumber: 4.4 Consensus size: 14
91990618 ATGCTAATAC
91990628 CATATAG-CAATTT
1 CATATAGTCAATTT
* *
91990641 CATAAATGTCATTTT
1 CATATA-GTCAATTT
91990656 CAT-TAGTCAATTT
1 CATATAGTCAATTT
*
91990669 ACATATAGTC-AGTT
1 -CATATAGTCAATTT
91990683 CATATA
1 CATATA
91990689 ACTCATTTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
13 18 0.46
14 8 0.21
15 13 0.33
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (14 bp):
CATATAGTCAATTT
Found at i:91990830 original size:25 final size:25
Alignment explanation
Indices: 91990751--91990836 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
91990741 ATACGCGAGA
* *
91990751 AAATGCTCACACGAGCTGTATCTGT
1 AAATGCTCACATGAGCTGTATCTAT
* * *
91990776 GAATACTCACATGAGCTATATCTAT
1 AAATGCTCACATGAGCTGTATCTAT
* * *
91990801 GAATGCTCACATGAGTTGTAACTAT
1 AAATGCTCACATGAGCTGTATCTAT
*
91990826 AAATGTTCACA
1 AAATGCTCACA
91990837 CAAGTTGTGA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (25 bp):
AAATGCTCACATGAGCTGTATCTAT
Found at i:91993341 original size:18 final size:18
Alignment explanation
Indices: 91993307--91993341 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91993297 ACAGAACATA
*
91993307 TTAGATACAATTACAGAT
1 TTAGATACAAATACAGAT
*
91993325 TTAGATACAAATGCAGA
1 TTAGATACAAATACAGA
91993342 GTCTTACCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
TTAGATACAAATACAGAT
Found at i:92000651 original size:17 final size:19
Alignment explanation
Indices: 92000614--92000654 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
92000604 TGCATTAGTT
92000614 GCTAAATGGAGAAAAATTG
1 GCTAAATGGAGAAAAATTG
*
92000633 GCTAAA-GGAG-AATATTG
1 GCTAAATGGAGAAAAATTG
92000650 GCTAA
1 GCTAA
92000655 TATGTTGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.52
18 4 0.19
19 6 0.29
ACGTcount: A:0.44, C:0.07, G:0.27, T:0.22
Consensus pattern (19 bp):
GCTAAATGGAGAAAAATTG
Found at i:92001302 original size:40 final size:40
Alignment explanation
Indices: 92001258--92001343 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
92001248 GATTATATCT
92001258 GGGCTAAGACCCAAAAGCATTTGTACGAGTTGCTATAGCC
1 GGGCTAAGACCCAAAAGCATTTGTACGAGTTGCTATAGCC
* * * * *
92001298 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCAAAAGCATTTGTACGAGTTGCTATAGCC
92001338 -GGCTAA
1 GGGCTAA
92001344 ATCTCGAAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 6 0.15
40 35 0.85
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
GGGCTAAGACCCAAAAGCATTTGTACGAGTTGCTATAGCC
Found at i:92001620 original size:22 final size:22
Alignment explanation
Indices: 92001580--92001621 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
92001570 GAATGTGCAT
*
92001580 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
92001602 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
92001622 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:92008083 original size:2 final size:2
Alignment explanation
Indices: 92008076--92008107 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
92008066 TGGTAAGAAC
92008076 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92008108 GAGAAATAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92009953 original size:39 final size:39
Alignment explanation
Indices: 92009871--92010033 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
92009861 TATGGTAACC
** * *
92009871 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCAGATATCACAACT
* *
92009911 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAACT
*
92009950 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAACT
* *
92009989 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAACT
92010028 CGCACA
1 CGCACA
92010034 TTCATTCACA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.86
40 16 0.14
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAACT
Found at i:92017433 original size:44 final size:41
Alignment explanation
Indices: 92017295--92017447 Score: 144
Period size: 43 Copynumber: 3.6 Consensus size: 41
92017285 CGTACAATGC
*
92017295 CAACGTCCCAGACATGGTCTTACATGTAATCAAATATCGATG
1 CAACGTCCCAGACATGGTCTTACACGTAATCAAAT-TCGATG
* * * * * * *
92017337 CCACTGTCCTAGAGAGGGTCTTACTCGAAATCAAATACGATG
1 CAAC-GTCCCAGACATGGTCTTACACGTAATCAAATTCGATG
* *
92017379 CCAATGTCCCAGAAATGGTCTTACACGTACATCATAATTCGATG
1 -CAACGTCCCAGACATGGTCTTACACGTA-ATCA-AATTCGATG
* *
92017423 ACAACATCCCAGACGTGGTCTTACA
1 -CAACGTCCCAGACATGGTCTTACA
92017448 AGAGAACACA
Statistics
Matches: 86, Mismatches: 21, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
42 27 0.31
43 31 0.36
44 28 0.33
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (41 bp):
CAACGTCCCAGACATGGTCTTACACGTAATCAAATTCGATG
Found at i:92023332 original size:35 final size:35
Alignment explanation
Indices: 92023291--92023360 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
92023281 GCTATATGAG
* *
92023291 AACACATTTTCATTGTTAGGATTCATCACACTATC
1 AACACATTTTCATTGTCAGGATTCATAACACTATC
92023326 AACACATTTTCATTGTCAGGATTCATAACACTATC
1 AACACATTTTCATTGTCAGGATTCATAACACTATC
92023361 GCAGTTCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.36
Consensus pattern (35 bp):
AACACATTTTCATTGTCAGGATTCATAACACTATC
Found at i:92024964 original size:42 final size:43
Alignment explanation
Indices: 92024883--92024998 Score: 148
Period size: 42 Copynumber: 2.7 Consensus size: 43
92024873 TCCTAGACGT
* *
92024883 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAC
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAC
*
92024926 GGTCTTACACGAAATCAAATA-CGATGCCGA-TGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGCC-ACTGTCCCAGACAC
*
92024968 GGTCTTACACGTAAATCATAA-GTCGATGCCA
1 GGTCTTACACG-AAATCA-AATATCGATGCCA
92024999 ACATCCCATA
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
42 29 0.45
43 27 0.42
44 9 0.14
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAC
Found at i:92025014 original size:44 final size:42
Alignment explanation
Indices: 92024882--92025019 Score: 127
Period size: 42 Copynumber: 3.2 Consensus size: 42
92024872 TTCCTAGACG
* * * *
92024882 TGGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAGACA
1 TGGTCTTACACGAAATCAAATA-CGATGCCAAC-ATCCCAGAAA
* * ** *
92024925 CGGTCTTACACGAAATCAAATACGATGCCGATGTCCCAGACA
1 TGGTCTTACACGAAATCAAATACGATGCCAACATCCCAGAAA
*
92024967 TGGTCTTACACGTAAATCATAAGT-CGATGCCAACATCCCATAAA
1 TGGTCTTACACG-AAATCA-AA-TACGATGCCAACATCCCAGAAA
92025011 TGGTCTTAC
1 TGGTCTTAC
92025020 GCGAGAACAC
Statistics
Matches: 81, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
42 28 0.35
43 26 0.32
44 26 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
TGGTCTTACACGAAATCAAATACGATGCCAACATCCCAGAAA
Found at i:92029799 original size:55 final size:54
Alignment explanation
Indices: 92029691--92029929 Score: 208
Period size: 55 Copynumber: 4.5 Consensus size: 54
92029681 ATTAGGGTTT
* * *
92029691 AAGGATACCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTCTATAAGGC
* * * * *
92029746 AAGGATACCAGGTAAGACCATGTCAAGACAAGGCATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGG-C
* * *
92029802 AAGG-T-CACATCTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATAC-CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * *
92029854 AATGATACCATGTAAGACCATGTCAAGACATGGCAATGGTTAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* *
92029903 AAGGATACCACGTAAGACCATGACAAG
1 AAGGATACCATGTAAGACCATGCCAAG
92029930 TCTTGGAAAT
Statistics
Matches: 151, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
49 24 0.16
52 5 0.03
53 42 0.28
54 10 0.07
55 66 0.44
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:92036105 original size:39 final size:39
Alignment explanation
Indices: 92036010--92036176 Score: 208
Period size: 39 Copynumber: 4.3 Consensus size: 39
92036000 GACTATTAGC
* * ** * *
92036010 CCGGATATAATTCCAGCACATAGCCGGCGAACCTGAAGT
1 CCGGATATAATTCCCGCATATAGCCTACGGACCTTAAGT
** * *
92036049 TTGAATATGATTCCCGCATATAGCCTACGGACCTTAAGT
1 CCGGATATAATTCCCGCATATAGCCTACGGACCTTAAGT
* *
92036088 CCGGATATAATTTCCGCATATAGCCTACAGACCTTAAGT
1 CCGGATATAATTCCCGCATATAGCCTACGGACCTTAAGT
92036127 CCGGATATAATTCCCGCATATAGCCTACGGACCTTAAGT
1 CCGGATATAATTCCCGCATATAGCCTACGGACCTTAAGT
* *
92036166 TCTGATATAAT
1 CCGGATATAAT
92036177 CACCATATAT
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 108 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (39 bp):
CCGGATATAATTCCCGCATATAGCCTACGGACCTTAAGT
Found at i:92039830 original size:19 final size:21
Alignment explanation
Indices: 92039806--92039846 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
92039796 TATGGAATAG
*
92039806 ACATGGG-G-CAGATGAGGCT
1 ACATGGGAGCCAGAAGAGGCT
92039825 ACATGGGAGCCAGAAGAGGCT
1 ACATGGGAGCCAGAAGAGGCT
92039846 A
1 A
92039847 TGCGAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 1 0.05
21 11 0.58
ACGTcount: A:0.32, C:0.17, G:0.39, T:0.12
Consensus pattern (21 bp):
ACATGGGAGCCAGAAGAGGCT
Found at i:92041203 original size:39 final size:39
Alignment explanation
Indices: 92041151--92041281 Score: 167
Period size: 39 Copynumber: 3.4 Consensus size: 39
92041141 GACTTTAGGC
* ***
92041151 TCGGATAT-ATTCCAGCACGTAGCCTGTAAACCTCAAGT
1 TCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
* *
92041189 TCGGATATGTTTCCAGCAGGTAGCCTGCGGACCTCACG-
1 TCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
92041227 TCTGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 TC-GGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
* *
92041267 CCAGATATGTTTCCA
1 TCGGATATGTTTCCA
92041282 AATATCATGC
Statistics
Matches: 80, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
38 10 0.12
39 69 0.86
40 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
TCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
Found at i:92043654 original size:46 final size:46
Alignment explanation
Indices: 92043603--92043732 Score: 190
Period size: 46 Copynumber: 2.8 Consensus size: 46
92043593 ATGGTTGAGC
92043603 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAA
* * *
92043648 TGTCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCGAAA
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAA
* * *
92043695 ACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92043733 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 71 0.96
47 3 0.04
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAA
Found at i:92051872 original size:39 final size:39
Alignment explanation
Indices: 92051820--92051950 Score: 194
Period size: 39 Copynumber: 3.4 Consensus size: 39
92051810 GACTTTAGGC
*
92051820 CCGGATATA-TTCCAGCGCGTAGCCTGCAGACCTCAAGT
1 CCGGATATATTTCCAGCGCGTAGCCTGCGGACCTCAAGT
*
92051858 CCGGATATATTTCCAGCAG-GTAGCCTGCGGACCTCACGT
1 CCGGATATATTTCCAGC-GCGTAGCCTGCGGACCTCAAGT
* *
92051897 CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCGCGTAGCCTGCGGACCTCAAGT
*
92051936 CCAGATATATTTCCA
1 CCGGATATATTTCCA
92051951 AATATCATGA
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
38 9 0.11
39 73 0.88
40 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCGGATATATTTCCAGCGCGTAGCCTGCGGACCTCAAGT
Found at i:92052622 original size:21 final size:21
Alignment explanation
Indices: 92052596--92052636 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
92052586 TGCATATTCT
92052596 AATTTCATAAACTAATTTACG
1 AATTTCATAAACTAATTTACG
92052617 AATTTCATAAACTAATTTAC
1 AATTTCATAAACTAATTTAC
92052637 TAAATCAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTCATAAACTAATTTACG
Found at i:92053034 original size:50 final size:50
Alignment explanation
Indices: 92052938--92053043 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 50
92052928 ATTGGAACAC
* * * * *
92052938 CACATAAATACTTACCTATATGACCGGATATACCAAATTCATTATATCAT
1 CACATAAATACATACCTATAAGACCGAATATACCAAACTCAATATATCAT
* * *
92052988 TACATAAGTACATACCTATAAGACCGAATATA-CAAGGCTCAATATATCAT
1 CACATAAATACATACCTATAAGACCGAATATACCAA-ACTCAATATATCAT
92053038 CACATA
1 CACATA
92053044 TGGCTAGTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
49 3 0.07
50 43 0.93
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (50 bp):
CACATAAATACATACCTATAAGACCGAATATACCAAACTCAATATATCAT
Found at i:92054997 original size:55 final size:53
Alignment explanation
Indices: 92054910--92055148 Score: 233
Period size: 55 Copynumber: 4.5 Consensus size: 53
92054900 ATTAAGGTTT
92054910 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGCTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGG-AATTGGTAA-G-TTCATAAGGC
* * * *
92054965 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGAATTGGTAAGTT-C-ATAAGGC
* * * *
92055020 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGT
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGAATTGGTAAGTTCATAAGGC
** *
92055073 AATCATACCGTGTAAGACCATGCCAAGGCATGGCAA-TGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGGCATGG-AATTGGTAAGTTCAT-AAGGC
* *
92055122 AAGGATACCACGTAAGACCATGACAAG
1 AAGGATACCATGTAAGACCATGCCAAG
92055149 TCATAGCAAT
Statistics
Matches: 156, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
49 22 0.14
51 1 0.01
52 6 0.04
53 42 0.27
54 9 0.06
55 72 0.46
56 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGAATTGGTAAGTTCATAAGGC
Found at i:92055093 original size:53 final size:53
Alignment explanation
Indices: 92054913--92055117 Score: 241
Period size: 55 Copynumber: 3.8 Consensus size: 53
92054903 AAGGTTTAAG
* *
92054913 GATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGCTTC-TAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGGCATGG-CATTGGTAA-G-TTCATAAGGCAAA
* * *
92054968 GATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT-C-ATAAGGCAAA
* * * * *
92055023 GGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGTAAT
1 GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGCAAA
* * *
92055076 CATACCGTGTAAGACCATGCCAAGGCATGGCAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT
92055118 TCAAAAGGAT
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 46 0.36
54 8 0.06
55 72 0.56
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGCAAA
Found at i:92055116 original size:108 final size:110
Alignment explanation
Indices: 92054917--92055117 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
92054907 TTTAAGGATA
*
92054917 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGCTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGCTTCTAAGGCAAGCATACCATGTAAGA
* *
92054982 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGCCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * * *
92055027 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGTAATCATACCGTGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGCTTC-TAAGGCAAGCATACCATGTAAG
* *
92055089 ACCATGCCAAGGCATGGCAATGGTAAGTT
65 ACCATGCCAAGACATGGCAATGATAAGTT
92055118 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 44 0.55
109 7 0.09
110 26 0.32
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGCTTCTAAGGCAAGCATACCATGTAAGA
CCATGCCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Done.