Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 295 of 433
Found at i:92061215 original size:42 final size:42
Alignment explanation
Indices: 92061136--92061329 Score: 140
Period size: 42 Copynumber: 4.3 Consensus size: 42
92061126 CATAGTTCAA
* **
92061136 CTATGGTCTTACACATCTTCACATAATGATTCCATAGCCCAG
1 CTATGGTCTTACACATATTCACATAATGATGACATAGCCCAG
* *
92061178 CTATGGTCTTACACATATTCATAT-ATCGATGAGATAGCCCAG
1 CTATGGTCTTACACATATTCACATAAT-GATGACATAGCCCAG
* * * *
92061220 CTATGGTCTTACACGTAATCACATATCACTTATCGATGCCATAGCCTAG
1 CTATGGTCTTACACATATTCAC--AT-A---AT-GATGACATAGCCCAG
* *
92061269 CTATGGTCTTACACGGATCACATATCACAT-ATCGATGCCATAGCCTAG
1 CTATGGTCTTACAC--AT---AT-TCACATAAT-GATGACATAGCCCAG
92061317 CTATGGTCTTACA
1 CTATGGTCTTACA
92061330 TAAATCACAT
Statistics
Matches: 125, Mismatches: 13, Indels: 22
0.78 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
42 53 0.42
44 2 0.02
48 31 0.25
49 29 0.23
51 1 0.01
53 2 0.02
54 1 0.01
55 4 0.03
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
CTATGGTCTTACACATATTCACATAATGATGACATAGCCCAG
Found at i:92061308 original size:48 final size:48
Alignment explanation
Indices: 92061189--92061494 Score: 269
Period size: 48 Copynumber: 6.2 Consensus size: 48
92061179 TATGGTCTTA
* **
92061189 CACATATTCATATATCGATGAGATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
* * *
92061239 CACATATCACTTATCGATGCCATAGCCTAGCTATGGTCTTACACGGAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* **
92061287 CACATATCACATATCGATGCCATAGCCTAGCTATGGTCTTACATAAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * * *
92061335 CACATATCTCAT-T-GATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAAT
* * * * * *
92061382 CATATATCAC--AGCGATGCCATATCCCAGATATGGTCTTATACGGAAA
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAAT
* * * *
92061429 CACATAATCACATCTCTCCAATGCCATAGCCCAGCCATGGTCTTATACAGAAAT
1 CACAT-ATCACA--TAT-CGATGCCATAGCCCAGCTATGGTCTTACAC-G-AAT
92061483 CACATATCACAT
1 CACATATCACAT
92061495 GTTGCCATGG
Statistics
Matches: 212, Mismatches: 34, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
46 24 0.11
47 45 0.21
48 62 0.29
49 34 0.16
50 6 0.03
51 1 0.00
53 33 0.16
54 7 0.03
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:92064593 original size:30 final size:30
Alignment explanation
Indices: 92064557--92064614 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
92064547 TCAACTTGAG
* *
92064557 AAAAAATTATTTAAATACTA-CTTATGATA
1 AAAAAAATATTTAAATACCACCTTATGATA
*
92064586 AAAAAAATATTTAAGTACCACCTTATGAT
1 AAAAAAATATTTAAATACCACCTTATGAT
92064615 TTAAGTAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.34
Consensus pattern (30 bp):
AAAAAAATATTTAAATACCACCTTATGATA
Found at i:92064618 original size:19 final size:19
Alignment explanation
Indices: 92064594--92064640 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
92064584 TAAAAAAAAT
* *
92064594 ATTTAAGTACCACCTTATG
1 ATTTAAGTAACAACTTATG
*
92064613 ATTTAAGTAACAATTTATG
1 ATTTAAGTAACAACTTATG
*
92064632 AATTAAGTA
1 ATTTAAGTA
92064641 TACATAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (19 bp):
ATTTAAGTAACAACTTATG
Found at i:92068471 original size:42 final size:42
Alignment explanation
Indices: 92068411--92068491 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
92068401 TCACATGGCT
*
92068411 GTGTAACTCTCTGACTTGCCATACACGACCGTGTCGCAGGTC
1 GTGTAACTCTCTGACTTGCCACACACGACCGTGTCGCAGGTC
* * * *
92068453 GTGTAACTCTCTGGCTTGCCACACATGGCTGTGTCGCAG
1 GTGTAACTCTCTGACTTGCCACACACGACCGTGTCGCAG
92068492 CCGTGTGCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.17, C:0.30, G:0.26, T:0.27
Consensus pattern (42 bp):
GTGTAACTCTCTGACTTGCCACACACGACCGTGTCGCAGGTC
Found at i:92072395 original size:29 final size:29
Alignment explanation
Indices: 92072362--92072434 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
92072352 GTGACGAGAT
*
92072362 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
92072391 TGGCACTAAGTGTGCGTGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
92072420 TGACACTATGTGTGC
1 TGGCACTAAGTGTGC
92072435 AAGCTGAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:92078364 original size:20 final size:20
Alignment explanation
Indices: 92078331--92078368 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
92078321 ACTAATTATG
*
92078331 CATGTTATGCTTAAATGTTT
1 CATGTGATGCTTAAATGTTT
*
92078351 CATGTGATGGTTAAATGT
1 CATGTGATGCTTAAATGT
92078369 GGTATATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
CATGTGATGCTTAAATGTTT
Found at i:92092343 original size:15 final size:15
Alignment explanation
Indices: 92092325--92092356 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
92092315 CAAACTCTTA
92092325 AAAATAGTATAGGTT
1 AAAATAGTATAGGTT
92092340 AAAATAGTATAGGTT
1 AAAATAGTATAGGTT
92092355 AA
1 AA
92092357 TGTATAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (15 bp):
AAAATAGTATAGGTT
Found at i:92096507 original size:99 final size:96
Alignment explanation
Indices: 92096338--92096601 Score: 289
Period size: 96 Copynumber: 2.8 Consensus size: 96
92096328 TAATGCTGAT
* *
92096338 GCCATGTCCCAGACATGGTCTTACACT-G-GCTCATC-TATCTAGTG--GATGCCATGTCCTAGA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATATC-AGTGCCGATGCCATGTCCAAGA
92096398 CATGGTCTTACACTGACTATCGAAATCG-AGGCCAAC
64 CATGGTCTTACACTGAC-A-C-AAATCGTA-GCCAAC
* *
92096434 GCCATGTCCCAGACGTGGTCTTACACTAGCTCTCACATATCCGTGCCGATGCCATGTCCAAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCAGTGCCGATGCCATGTCCAAGACA
** * *
92096499 TGGTCTTACACTGACACATCTCGTAGCCGAT
66 TGGTCTTACACTGACACAAATCGTAGCCAAC
* * * *
92096530 G-CATGCCCCAGACAT-GTCTTACACTAGCTCT--CATCTCAATGCCGATGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCAGTGCCGATGCCATGTCCAAGACA
92096591 T-GTCTTACACT
66 TGGTCTTACACT
92096602 AGTGCACAAG
Statistics
Matches: 148, Mismatches: 14, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
91 10 0.07
92 27 0.18
94 16 0.11
95 12 0.08
96 35 0.24
97 7 0.05
98 9 0.06
99 32 0.22
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (96 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCAGTGCCGATGCCATGTCCAAGACA
TGGTCTTACACTGACACAAATCGTAGCCAAC
Found at i:92096565 original size:46 final size:48
Alignment explanation
Indices: 92096335--92096603 Score: 238
Period size: 47 Copynumber: 5.7 Consensus size: 48
92096325 ATATAATGCT
* *
92096335 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTATCTAGT-G--
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TC-ATCTCGTAGCC
* * **
92096382 GATGCCATGTCCTAGACATGGTCTTACACT-GACTATCGAAATCG-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-ATCTCGTA-GCC
* * * *
92096431 AACGCCATGTCCCAGACGTGGTCTTACACTAGCTCTCACATATCCGT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATCT-CGTAGCC
* * *
92096481 GATGCCATGTCCAAGACATGGTCTTACACT-G-ACACATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGTAGCC
* *
92096527 GATG-CATGCCCCAGACAT-GTCTTACACTAGCTCTCATCTC-AATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGTA-GCC
92096573 GATGCCATGTCCCAGACAT-GTCTTACACTAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAG
92096604 TGCACAAGTA
Statistics
Matches: 182, Mismatches: 25, Indels: 30
0.77 0.11 0.13
Matches are distributed among these distances:
44 10 0.05
45 17 0.09
46 31 0.17
47 57 0.31
48 1 0.01
49 30 0.16
50 33 0.18
51 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGTAGCC
Found at i:92108969 original size:28 final size:28
Alignment explanation
Indices: 92108928--92108992 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
92108918 AACAGAAGGC
*
92108928 TGCGAGCTAGTGAAGTGCAAGCTATGCA
1 TGCGAGCTAGTGAAGAGCAAGCTATGCA
**
92108956 TGCGAGCT-GATGAAGAGTGAGCTATGCA
1 TGCGAGCTAG-TGAAGAGCAAGCTATGCA
*
92108984 TACGAGCTA
1 TGCGAGCTA
92108993 AATTCTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (28 bp):
TGCGAGCTAGTGAAGAGCAAGCTATGCA
Found at i:92110236 original size:5 final size:5
Alignment explanation
Indices: 92110226--92110253 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
92110216 AAATCTGTGA
92110226 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
92110254 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:92116074 original size:40 final size:39
Alignment explanation
Indices: 92116003--92116181 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 39
92115993 ACTCGTTCAA
*
92116003 ATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAG
1 ATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCACAG
* *
92116042 ATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAA
1 ATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCACAG
* * *
92116082 ATGCCTTTGCATCTTAGTCCGGATTTAGTAACTCGCAC-G
1 ATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCACAG
* * * *
92116121 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACA-
1 -ATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAG
*
92116162 AAGCCTTCGGGACTTAGCCC
1 ATGCCTTC-GGACTTAGCCC
92116182 AGACATCATT
Statistics
Matches: 118, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
39 10 0.08
40 98 0.83
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (39 bp):
ATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAG
Found at i:92116178 original size:80 final size:79
Alignment explanation
Indices: 92116000--92116181 Score: 201
Period size: 80 Copynumber: 2.3 Consensus size: 79
92115990 GCTACTCGTT
*
92116000 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGA
* *
92116065 TTTAGTAACTCGCA
66 TATAGTAACTAGCA
* * * **
92116079 CAAATGCCTTTGCATCTTAGTCCGGATT-TAGTAACTCGCAC-GAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGA-CTTAGCCCGG-TTATAGTAACTCGCACAG-ATGCCTTCGGGA-CTTAACC
*
92116141 CGGATATAGTCACTTAGCA
62 CGGATATAGTAAC-TAGCA
92116160 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTC-GGACTTAGCCC
92116182 AGACATCATT
Statistics
Matches: 85, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
79 16 0.19
80 57 0.67
81 12 0.14
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCA
Found at i:92119237 original size:48 final size:48
Alignment explanation
Indices: 92119169--92120002 Score: 953
Period size: 48 Copynumber: 16.9 Consensus size: 48
92119159 CAAGATAAAT
* * * * *
92119169 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
* * *
92119217 ATATGTGTATGTGGTAAAGCCGAATGGAGAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
* *
92119265 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
*
92119313 ATATGTGTATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
* *
92119361 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
*
92119409 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
* *
92119457 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
*
92119505 ATATGTGTATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
** * *
92119553 ATATGTATATGTGGTAATATATGTGTGATAT-G-TATATGTGGTAAAGCCGA-ATG-GCTA-
1 ATATGTATATGTGGT-A-A-A-G-CCGA-ATGGCGA-ATGT-G-AAA---TATATGTG--AG
* ** * * *
92119610 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 ATATG---TATATGTG-G-TA---A-A-GCCG-AATG--G-----CGAATGTGAAATATATGTGA
92119675 G
48 G
*
92119676 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA--TGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
* *
92119722 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
* *
92119770 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
* * * *
92119818 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
* *
92119866 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
* *
92119914 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
* *
92119962 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATAT
92120003 GTAGGCGATG
Statistics
Matches: 696, Mismatches: 54, Indels: 72
0.85 0.07 0.09
Matches are distributed among these distances:
46 45 0.06
48 564 0.81
49 1 0.00
50 1 0.00
51 1 0.00
52 2 0.00
53 8 0.01
54 3 0.00
55 6 0.01
56 3 0.00
57 8 0.01
58 3 0.00
60 8 0.01
61 4 0.01
62 4 0.01
63 15 0.02
65 2 0.00
66 7 0.01
67 1 0.00
68 3 0.00
69 1 0.00
70 4 0.01
71 2 0.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAG
Found at i:92119354 original size:144 final size:144
Alignment explanation
Indices: 92119169--92120002 Score: 1093
Period size: 144 Copynumber: 5.6 Consensus size: 144
92119159 CAAGATAAAT
* * * *
92119169 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTGTATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
** * *
92119234 AGCCGAATGGAGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
92119299 GAAATATATGTGTG
131 GAAATATATGTGTG
* * *
92119313 ATATGTGTATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
*
92119378 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
* *
92119443 GAAATATATATGAG
131 GAAATATATGTGTG
*
92119457 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTGTATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
* * **
92119522 AGCCGAATGGCGAATGTGAAATATATGTGAGATATGTATATGTGGTAATATATGTGTGATAT-G-
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGT-A-A-A-G-CCGA-ATGGC
*
92119585 TATATGTGGTAAAGCCGA-ATGGCTAATGTG
125 TA-ATGT-G-AAA---TATAT-G----TGTG
* *
92119615 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
1 --ATATGTAT-----------ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
*
92119680 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA--TGAGATATGTATATGTGGTAAAGCC
53 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
92119743 GAATGGCTAATGTGAAATATATGTGTG
118 GAATGGCTAATGTGAAATATATGTGTG
92119770 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
* * *
92119835 AGCCGAATGGCTAATGTGAAATATGTATGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
* * *
92119900 GAAATATGTATGAG
131 GAAATATATGTGTG
92119914 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
*
92119979 AGCCGAATGGCTAGTGTGAAATAT
66 AGCCGAATGGCTAATGTGAAATAT
92120003 GTAGGCGATG
Statistics
Matches: 613, Mismatches: 42, Indels: 70
0.85 0.06 0.10
Matches are distributed among these distances:
142 81 0.13
144 370 0.60
145 1 0.00
146 1 0.00
147 1 0.00
148 2 0.00
149 7 0.01
150 3 0.00
151 3 0.00
153 8 0.01
154 1 0.00
155 4 0.01
158 3 0.00
159 2 0.00
160 8 0.01
162 3 0.00
163 3 0.00
164 7 0.01
165 3 0.00
166 1 0.00
167 1 0.00
168 1 0.00
169 19 0.03
171 80 0.13
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
GAAATATATGTGTG
Found at i:92119563 original size:15 final size:14
Alignment explanation
Indices: 92119543--92119593 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 14
92119533 GAATGTGAAA
92119543 TATATGTGAGATATG
1 TATATGTG-GATATG
*
92119558 TATATGTGG-TA-A
1 TATATGTGGATATG
92119570 TATATGTGTGATATG
1 TATATGTG-GATATG
92119585 TATATGTGG
1 TATATGTGG
92119594 TAAAGCCGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 8 0.26
13 3 0.10
14 4 0.13
15 16 0.52
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.43
Consensus pattern (14 bp):
TATATGTGGATATG
Found at i:92119572 original size:27 final size:27
Alignment explanation
Indices: 92119541--92119596 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
92119531 GCGAATGTGA
92119541 AATATATGTGAGATATGTATATGTGGT
1 AATATATGTGAGATATGTATATGTGGT
*
92119568 AATATATGTGTGATATGTATATGTGGT
1 AATATATGTGAGATATGTATATGTGGT
92119595 AA
1 AA
92119597 AGCCGAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.41
Consensus pattern (27 bp):
AATATATGTGAGATATGTATATGTGGT
Found at i:92119583 original size:75 final size:75
Alignment explanation
Indices: 92119493--92119644 Score: 277
Period size: 75 Copynumber: 2.0 Consensus size: 75
92119483 GCTAATGTGA
*
92119493 AATATATGTGTGATATGTGTATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAGATATG
1 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAGATATG
92119558 TATATGTGGT
66 TATATGTGGT
* *
92119568 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAGATATG
92119633 TATATGTGGT
66 TATATGTGGT
92119643 AA
1 AA
92119645 AGCCGAATGG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.36
Consensus pattern (75 bp):
AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAGATATG
TATATGTGGT
Found at i:92119587 original size:123 final size:123
Alignment explanation
Indices: 92119445--92119692 Score: 451
Period size: 123 Copynumber: 2.0 Consensus size: 123
92119435 GCGAATGTGA
92119445 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
*
92119510 TGTATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAGATATGTATATGTGGT
66 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAGATATGTATATGTGGT
* *
92119568 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* *
92119633 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGT
66 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAGATATGTATATGTGGT
92119691 AA
1 AA
92119693 AGCCGAATGG
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 120 1.00
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.34
Consensus pattern (123 bp):
AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGAGATATGTATATGTGGT
Found at i:92123148 original size:25 final size:25
Alignment explanation
Indices: 92123118--92123165 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
92123108 TGCGAAATAT
*
92123118 ATTATTTATCAATTATTTTCTAAAC
1 ATTATTTATCAATCATTTTCTAAAC
92123143 ATTATTTATCAATCATTTTCTAA
1 ATTATTTATCAATCATTTTCTAA
92123166 GCAAACTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTATTTATCAATCATTTTCTAAAC
Found at i:92125910 original size:21 final size:21
Alignment explanation
Indices: 92125886--92125927 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
92125876 TCACCATCAA
92125886 CATCATCATTAAAATATCTGT
1 CATCATCATTAAAATATCTGT
92125907 CATCATCATTAAAATATCTGT
1 CATCATCATTAAAATATCTGT
92125928 TATTGCATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (21 bp):
CATCATCATTAAAATATCTGT
Found at i:92129016 original size:32 final size:32
Alignment explanation
Indices: 92128979--92129043 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
92128969 GACTTAGCAA
92128979 AAACTTCATATTTTATTCCGTTTTGCAAAACT
1 AAACTTCATATTTTATTCCGTTTTGCAAAACT
92129011 AAACTTCATATTTTATTCCGTTTTGCAAAACT
1 AAACTTCATATTTTATTCCGTTTTGCAAAACT
92129043 A
1 A
92129044 CTTCATTTGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.43
Consensus pattern (32 bp):
AAACTTCATATTTTATTCCGTTTTGCAAAACT
Found at i:92129578 original size:42 final size:42
Alignment explanation
Indices: 92129519--92129603 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
92129509 AACTCATTAC
92129519 AAGTTATTATTTCTCTCCCTCTAATGTTGGAAAAACTATCAA
1 AAGTTATTATTTCTCTCCCTCTAATGTTGGAAAAACTATCAA
*
92129561 AAGTTATTATTTCTCTCCCTCTAATGTTGGGAAAACTATCAA
1 AAGTTATTATTTCTCTCCCTCTAATGTTGGAAAAACTATCAA
92129603 A
1 A
92129604 TTAAAATAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.38
Consensus pattern (42 bp):
AAGTTATTATTTCTCTCCCTCTAATGTTGGAAAAACTATCAA
Found at i:92134405 original size:33 final size:33
Alignment explanation
Indices: 92134356--92134479 Score: 185
Period size: 33 Copynumber: 3.8 Consensus size: 33
92134346 TTTCTTCTTG
* *
92134356 ACATTCCAGCTACTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTATCCAGCAACCAAACACTC
* * *
92134389 ACATTCTAGCTCCTGTCCAACAACCAAACACTC
1 ACATTCCAGCTCCTATCCAGCAACCAAACACTC
*
92134422 ACATTCCAGCTCCCATCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTATCCAGCAACCAAACACTC
*
92134455 ACATTCCAGCTTCTATCCAGCAACC
1 ACATTCCAGCTCCTATCCAGCAACC
92134480 TGAAACAGAG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 82 1.00
ACGTcount: A:0.32, C:0.41, G:0.07, T:0.19
Consensus pattern (33 bp):
ACATTCCAGCTCCTATCCAGCAACCAAACACTC
Found at i:92139053 original size:26 final size:26
Alignment explanation
Indices: 92139017--92139126 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
92139007 CATGAAATTC
92139017 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
92139043 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
92139069 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* * *
92139095 TTACCATGGAACATTTACCTAACCTT
1 TTATCATGAAACATTTACCTAACCTA
92139121 TTATCA
1 TTATCA
92139127 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:92140252 original size:15 final size:15
Alignment explanation
Indices: 92140232--92140262 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
92140222 GGACTCTTGG
92140232 ACTATTTGGTTTTTA
1 ACTATTTGGTTTTTA
92140247 ACTATTTGGTTTTTA
1 ACTATTTGGTTTTTA
92140262 A
1 A
92140263 ATGTTGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.13, T:0.58
Consensus pattern (15 bp):
ACTATTTGGTTTTTA
Found at i:92152693 original size:41 final size:40
Alignment explanation
Indices: 92152593--92152898 Score: 152
Period size: 41 Copynumber: 7.7 Consensus size: 40
92152583 GCAAAAATTT
*
92152593 TAAAATACAGAGCAATAGCGGCGTTTCAAGAAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGTTTCAAGAAAAACACCGC
* * *
92152634 T-AAAACAGAGCAACAGCGGTGTTT-TAGTAAAAAACACCGC
1 TAAAAACAGAGCAATAGCGGCGTTTCAAG--AAAAACACCGC
* *
92152674 TAAAAACAGAGCATTAGCGGCG---C----AAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGTTTCAAGAAAAACACCGC
* * * ** * *
92152707 TAAAAACTAGATCATTAGCGACGCTTT-GGGTAAAACGCCGC
1 TAAAAAC-AGAGCAATAGCGGCG-TTTCAAGAAAAACACCGC
* * * * *
92152748 TAAAAACCAGATCATTAGCGGCGCTTTC-GGTAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCG-TTTCAAGAAAAACACCGC
* * * *
92152789 TAAAAACCAGAGCATTAGCGGCGCTTTC-GGTAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCG-TTTCAAGAAAAACACCGC
* * * * *
92152830 TAAAAACCAGAGCATTAGCGGCACTTTC-GGTAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGC-GTTTCAAGAAAAACACCGC
*
92152871 TAAAAACCAGAGCATTAGCGGCGCTTTC
1 TAAAAA-CAGAGCAATAGCGGCG-TTTC
92152899 GATAAAAGCC
Statistics
Matches: 234, Mismatches: 14, Indels: 34
0.83 0.05 0.12
Matches are distributed among these distances:
33 16 0.07
34 13 0.06
38 2 0.01
39 18 0.08
40 14 0.06
41 170 0.73
42 1 0.00
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGTTTCAAGAAAAACACCGC
Found at i:92152846 original size:123 final size:115
Alignment explanation
Indices: 92152624--92152915 Score: 356
Period size: 123 Copynumber: 2.5 Consensus size: 115
92152614 CGTTTCAAGA
** * * * * *
92152624 AAAACGCCGCT-AAAA-CAGAGCAACAGCGGTGTTTTAGTAAAAAACACCGCTAAAAACAGAGCA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCG-ATAAAACGCCGCTAAAAACAGAGCA
* * * *
92152687 TTAGCGGCGCAAAACGCCGCTAAAAACTAGATCATTAGCGACGCTTTGGGT
65 TTAGCGGCGCAAAACGCCGCTAAAAACCAGAGCATTAGCGACACTTTCGGT
* *
92152738 AAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAA-CAGAGCA
*
92152803 TTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTTTCGGT
65 TTAGCGGCG----C---AAAACGCCGCTAAAAACCAGAGCATTAGCGACACTTTCGGT
92152861 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAA-GCCGCTAAAA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAA
92152916 GTCATATAAC
Statistics
Matches: 152, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
114 11 0.07
115 19 0.12
116 32 0.21
120 1 0.01
122 10 0.07
123 79 0.52
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (115 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAACAGAGCAT
TAGCGGCGCAAAACGCCGCTAAAAACCAGAGCATTAGCGACACTTTCGGT
Found at i:92152899 original size:41 final size:41
Alignment explanation
Indices: 92152697--92152915 Score: 368
Period size: 41 Copynumber: 5.4 Consensus size: 41
92152687 TTAGCGGCGC
* * * *
92152697 AAAACGCCGCTAAAAACTAGATCATTAGCGACGCTTTGGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
*
92152738 AAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
92152779 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
*
92152820 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
*
92152861 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
92152902 AAAA-GCCGCTAAAA
1 AAAACGCCGCTAAAA
92152916 GTCATATAAC
Statistics
Matches: 171, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
40 10 0.06
41 161 0.94
ACGTcount: A:0.35, C:0.26, G:0.22, T:0.18
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
Found at i:92153164 original size:36 final size:39
Alignment explanation
Indices: 92153094--92153169 Score: 104
Period size: 36 Copynumber: 2.0 Consensus size: 39
92153084 ATAGTTTAAG
* * *
92153094 ATATATGGTTTAGGGTTTAAGCAGGTTTATGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
92153133 ATATATGGTTTAAGATTT-A-C-GGTTTAGGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
92153169 A
1 A
92153170 GTATTTGAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
38 1 0.03
39 16 0.47
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (39 bp):
ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
Found at i:92153354 original size:25 final size:25
Alignment explanation
Indices: 92153325--92153376 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
92153315 GTGATTTTGA
92153325 ATGTGGAATTAGCATTTGTTGAACT
1 ATGTGGAATTAGCATTTGTTGAACT
92153350 ATGTGGAATTAGCATTTGTTGAACT
1 ATGTGGAATTAGCATTTGTTGAACT
92153375 AT
1 AT
92153377 TAGCTAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (25 bp):
ATGTGGAATTAGCATTTGTTGAACT
Found at i:92153693 original size:22 final size:22
Alignment explanation
Indices: 92153668--92153709 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
92153658 TGTGTTTGTG
92153668 GTCTAAGGTTTAGGGGTTTAGA
1 GTCTAAGGTTTAGGGGTTTAGA
* *
92153690 GTCTCAGGTTTAGGGTTTTA
1 GTCTAAGGTTTAGGGGTTTA
92153710 AATTTAGAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.07, G:0.33, T:0.40
Consensus pattern (22 bp):
GTCTAAGGTTTAGGGGTTTAGA
Found at i:92153762 original size:15 final size:15
Alignment explanation
Indices: 92153742--92153772 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
92153732 TTTAATTTAG
*
92153742 AAGATAAATGTATAT
1 AAGATAAATATATAT
92153757 AAGATAAATATATAT
1 AAGATAAATATATAT
92153772 A
1 A
92153773 TTATTATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:92159280 original size:40 final size:40
Alignment explanation
Indices: 92159225--92159449 Score: 312
Period size: 40 Copynumber: 5.6 Consensus size: 40
92159215 TATTCGGATG
* *
92159225 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
92159265 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
92159305 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
*
92159348 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
92159388 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
92159428 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
92159450 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 11, Indels: 13
0.88 0.06 0.07
Matches are distributed among these distances:
39 16 0.10
40 113 0.67
41 2 0.01
43 35 0.21
44 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:92159377 original size:83 final size:81
Alignment explanation
Indices: 92159225--92159449 Score: 332
Period size: 83 Copynumber: 2.8 Consensus size: 81
92159215 TATTCGGATG
* *
92159225 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGC-TAG-TGACCATATCCGGGCTAAGTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTG-CTATATCCGGGCTAAGTCCCGAAGG
92159288 CATTTGTGCTAGTGACT
65 CATTTGTGCTAGTGACT
* *
92159305 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--GTAGTTGCTATATCCGGGCTAAGTCCCGAAG
92159370 GCATTTGTGCTAGTGACT
64 GCATTTGTGCTAGTGACT
* * *
92159388 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCG-AGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCTATATCCGGGCTAAGTCCCGAAGG
92159450 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
79 15 0.11
80 42 0.32
81 1 0.01
83 72 0.55
84 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCTATATCCGGGCTAAGTCCCGAAGGC
ATTTGTGCTAGTGACT
Found at i:92167267 original size:39 final size:39
Alignment explanation
Indices: 92167160--92167377 Score: 250
Period size: 41 Copynumber: 5.6 Consensus size: 39
92167150 TATTCGGATG
*
92167160 ATATCCGGCCTAAGT-CCGAAGGCATTTGTGCTAGTGACC
1 ATATCCGG-CTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
92167199 ATATCTGGGCTAANGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATC-CGGCTAA-GTCCCGAAGGCATTTGTGCTAGTGACT
* *
92167240 ATATCCGGCGAAGTCCCGAAGGCATTTGTGAGTAGTG--T
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTG-CTAGTGACT
*
92167278 A-ATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
92167316 ATTATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
1 A-TATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
92167357 ATATCCGGCTAAAT-CCGAAGG
1 ATATCCGGCTAAGTCCCGAAGG
92167378 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 14, Indels: 21
0.82 0.07 0.11
Matches are distributed among these distances:
36 5 0.03
37 26 0.17
38 11 0.07
39 33 0.21
40 22 0.14
41 56 0.36
42 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:92167312 original size:76 final size:79
Alignment explanation
Indices: 92167160--92167348 Score: 244
Period size: 76 Copynumber: 2.4 Consensus size: 79
92167150 TATTCGGATG
*
92167160 ATATCCGGCCTAAGT-CCGAAGGCATTTGTGCTAGTGACCATATCTGGGCTAANGTCCCGAAGGC
1 ATATCCGG-CTAAGTCCCGAAGGCATTTGTGCTAGTGA-CATATCTGGGCTAAAGTCCCGAAGGC
92167224 ATTTGTGCTAGTGACT
64 ATTTGTGCTAGTGACT
* * *
92167240 ATATCCGGCGAAGTCCCGAAGGCATTTGTGAGTAGTG-TA-ATC-GGGCT-AAGTCCCGAAGGCA
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTG-CTAGTGACATATCTGGGCTAAAGTCCCGAAGGCA
92167301 TTTGTGCTAGTGACT
65 TTTGTGCTAGTGACT
* *
92167316 ATTATCCGGGCTAAGACCCGAAGGCATGTGTGC
1 A-TATCC-GGCTAAGTCCCGAAGGCATTTGTGC
92167349 GAGTTGCTAT
Statistics
Matches: 97, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
76 29 0.30
77 10 0.10
78 24 0.25
79 6 0.06
80 23 0.24
81 5 0.05
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACATATCTGGGCTAAAGTCCCGAAGGCAT
TTGTGCTAGTGACT
Found at i:92168450 original size:40 final size:40
Alignment explanation
Indices: 92168393--92168609 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
92168383 GCTCGATTGT
* * * *
92168393 CTTCGGGACATAGCCCGG-TTACAGTAATTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGC
*
92168433 CTTCGGGACTTAACCCGGATTTGGTAACT-GCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
92168472 CTTCGGGAATTAA-CCGGATTT-GTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* *
92168510 CTTCGGGAATTAACCCGAATTT-GATAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATGC
* * *
92168550 CTTCGGGACTTAACCCGGATTTAGTCACTTAGCACAAAAG-
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
*
92168590 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGAT
92168610 ACCATTCGAA
Statistics
Matches: 158, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
37 6 0.04
38 31 0.20
39 30 0.19
40 79 0.50
41 12 0.08
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:92168475 original size:39 final size:40
Alignment explanation
Indices: 92168416--92168609 Score: 261
Period size: 40 Copynumber: 4.9 Consensus size: 40
92168406 CCCGGTTACA
*
92168416 GTAATTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
1 GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
*
92168456 GTAACT-GCACAAATGCCTTCGGGAATTAA-CCGGATTT-
1 GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
* *
92168493 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGAATTTG
1 GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
* *
92168533 ATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
* * * *
92168573 GTCACTTAGCACAAAAG-CTTCGGGACTTAGCCCGGAT
1 GTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGAT
92168610 ACCATTCGAA
Statistics
Matches: 138, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
37 6 0.04
38 31 0.22
39 29 0.21
40 63 0.46
41 9 0.07
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (40 bp):
GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
Found at i:92168516 original size:77 final size:80
Alignment explanation
Indices: 92168415--92168609 Score: 272
Period size: 77 Copynumber: 2.5 Consensus size: 80
92168405 GCCCGGTTAC
* *
92168415 AGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAACT-GCACAAATGCCTTCGGG
1 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGATAACTCGCACAAATGCCTTCGGG
92168479 AATTAA-CCGGATTT
66 AATTAACCCGGATTT
* *
92168493 -GTAACTCGCACAAATGCCTTCGGGAATTAACCCGAATTTGATAACTCGCACAAATGCCTTCGGG
1 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGATAACTCGCACAAATGCCTTCGGG
*
92168557 ACTTAACCCGGATTT
66 AATTAACCCGGATTT
* * * *
92168572 AGTCACTTAGCACAAAAG-CTTCGGGACTTAGCCCGGAT
1 AGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGAT
92168610 ACCATTCGAA
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
77 42 0.41
78 22 0.22
79 8 0.08
80 21 0.21
81 9 0.09
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (80 bp):
AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGATAACTCGCACAAATGCCTTCGGG
AATTAACCCGGATTT
Found at i:92171219 original size:46 final size:46
Alignment explanation
Indices: 92171166--92171302 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
92171156 TATATATACA
* * *
92171166 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
92171212 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * *
92171258 TATCTTATACACATTTCTCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
92171303 ATACATGTTC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:92171337 original size:47 final size:47
Alignment explanation
Indices: 92171276--92171563 Score: 407
Period size: 47 Copynumber: 6.1 Consensus size: 47
92171266 ACACATTTCT
* *
92171276 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
92171323 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
92171370 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
92171417 CATTGGCCATTCGGCCTTATCACACATA-CCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
92171463 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATACATGTTCACATTCATCA
* * **
92171514 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
92171561 CAT
1 CAT
92171564 AAAATCCTAA
Statistics
Matches: 221, Mismatches: 15, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
46 37 0.17
47 140 0.63
48 3 0.01
49 2 0.01
50 4 0.02
51 35 0.16
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:92171440 original size:22 final size:22
Alignment explanation
Indices: 92171413--92171486 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
92171403 GTTCACATTC
92171413 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
92171435 ATCACACAT-ACCATGTTC-ACATT
1 ATCACA-TTGGCCA--TTCGGCCTT
92171458 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
92171481 ATCACA
1 ATCACA
92171487 CATATATATA
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
22 18 0.47
23 8 0.21
24 12 0.32
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:92187885 original size:133 final size:133
Alignment explanation
Indices: 92187647--92187912 Score: 478
Period size: 133 Copynumber: 2.0 Consensus size: 133
92187637 GAGTAAGCAA
*
92187647 TTAAGCTTAGTAAGTTTGTATAACACAGAATTTAACTTACCATTTAAACACAATTCAGGTAAGTA
1 TTAAGCTTAGTAAGTTCGTATAACACAGAATTTAACTTACCATTTAAACACAATTCAGGTAAGTA
*
92187712 ACTCAAAGCATAACACAATTCAATTTGGCCAAAGCCTAACACATGATAATTAACCAAGTTAGTTA
66 ACTCAAAGCATAACACAATTCAATTTGGCCAAAGCCTAACACATGATAATTAACCAAGTTAGCTA
92187777 TGT
131 TGT
*
92187780 TTAAGCTTAGTAAGTTCGTATAACACAGAATTTAACTTACCATTTAACCACAATTCAGGTAAGTA
1 TTAAGCTTAGTAAGTTCGTATAACACAGAATTTAACTTACCATTTAAACACAATTCAGGTAAGTA
** *
92187845 ACTCAAAGCATAACACAATTCAATTTGGCTTAAGCCTAACACATGATCATTAACCAAGTTAGCTA
66 ACTCAAAGCATAACACAATTCAATTTGGCCAAAGCCTAACACATGATAATTAACCAAGTTAGCTA
92187910 TGT
131 TGT
92187913 ATTCATATAA
Statistics
Matches: 127, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 127 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (133 bp):
TTAAGCTTAGTAAGTTCGTATAACACAGAATTTAACTTACCATTTAAACACAATTCAGGTAAGTA
ACTCAAAGCATAACACAATTCAATTTGGCCAAAGCCTAACACATGATAATTAACCAAGTTAGCTA
TGT
Found at i:92188237 original size:25 final size:24
Alignment explanation
Indices: 92188209--92188261 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
92188199 CTAAAAAATA
* *
92188209 GTAAGCTCATATGAGCTGAGTATCG
1 GTAAGCTCATAAGAGCTG-GAATCG
*
92188234 GTAAGCTCATAAGAGTTGGAATCG
1 GTAAGCTCATAAGAGCTGGAATCG
92188258 GTAA
1 GTAA
92188262 CCCTAATGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.26
Consensus pattern (24 bp):
GTAAGCTCATAAGAGCTGGAATCG
Found at i:92197915 original size:17 final size:17
Alignment explanation
Indices: 92197893--92197934 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
92197883 TCACCATAAG
92197893 AGCTTACTAAGCTTTAT
1 AGCTTACTAAGCTTTAT
92197910 AGCTTACTAAGCTTTAT
1 AGCTTACTAAGCTTTAT
92197927 AGCTTACT
1 AGCTTACT
92197935 TTGTGTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (17 bp):
AGCTTACTAAGCTTTAT
Found at i:92203336 original size:12 final size:13
Alignment explanation
Indices: 92203308--92203341 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
92203298 TAAATTAAAA
92203308 TTTTCAAAAGTAT
1 TTTTCAAAAGTAT
92203321 TTTTCAAAA-TAT
1 TTTTCAAAAGTAT
*
92203333 TTTTTAAAA
1 TTTTCAAAA
92203342 ACTCTTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.50
Consensus pattern (13 bp):
TTTTCAAAAGTAT
Found at i:92203981 original size:26 final size:26
Alignment explanation
Indices: 92203945--92203997 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
92203935 GCCTTGCTTG
92203945 CTTAGAGGAACACCAAGAAGAAGAAT
1 CTTAGAGGAACACCAAGAAGAAGAAT
92203971 CTTAGAGGAACACCAAGAAGAAGAAT
1 CTTAGAGGAACACCAAGAAGAAGAAT
92203997 C
1 C
92203998 CTTGAGAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.17, G:0.23, T:0.11
Consensus pattern (26 bp):
CTTAGAGGAACACCAAGAAGAAGAAT
Found at i:92209624 original size:20 final size:20
Alignment explanation
Indices: 92209599--92209650 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
92209589 CAGCCTACCG
92209599 ACACGGGCGTGTTCCAAGCC
1 ACACGGGCGTGTTCCAAGCC
92209619 ACACGGGCGTGTTCCAAGCC
1 ACACGGGCGTGTTCCAAGCC
92209639 ACACGGGCGTGT
1 ACACGGGCGTGT
92209651 GACTTTGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Consensus pattern (20 bp):
ACACGGGCGTGTTCCAAGCC
Found at i:92219881 original size:9 final size:9
Alignment explanation
Indices: 92219867--92219903 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
92219857 TGATATACAC
92219867 ATGATATGT
1 ATGATATGT
92219876 ATGATATGCAT
1 ATGATATG--T
92219887 ATGATATGT
1 ATGATATGT
92219896 ATGATATG
1 ATGATATG
92219904 CACATGATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 17 0.65
11 9 0.35
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.41
Consensus pattern (9 bp):
ATGATATGT
Found at i:92219881 original size:20 final size:20
Alignment explanation
Indices: 92219856--92219912 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
92219846 ATAATTTGAC
*
92219856 ATGATATACACATGATATGT
1 ATGATATGCACATGATATGT
*
92219876 ATGATATGCATATGATATGT
1 ATGATATGCACATGATATGT
92219896 ATGATATGCACATGATA
1 ATGATATGCACATGATA
92219913 AATTCATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.35
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:92219889 original size:11 final size:11
Alignment explanation
Indices: 92219856--92219912 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
92219846 ATAATTTGAC
* *
92219856 ATGATATACAC
1 ATGATATGCAT
92219867 ATGATATG--T
1 ATGATATGCAT
92219876 ATGATATGCAT
1 ATGATATGCAT
92219887 ATGATATG--T
1 ATGATATGCAT
*
92219896 ATGATATGCAC
1 ATGATATGCAT
92219907 ATGATA
1 ATGATA
92219913 AATTCATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
9 17 0.44
11 22 0.56
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.35
Consensus pattern (11 bp):
ATGATATGCAT
Found at i:92219893 original size:5 final size:5
Alignment explanation
Indices: 92219867--92219903 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
92219857 TGATATACAC
92219867 ATGAT ATG-T ATGAT ATGCAT ATGAT ATG-T ATGAT ATG
1 ATGAT ATGAT ATGAT ATG-AT ATGAT ATGAT ATGAT ATG
92219904 CACATGATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 8 0.28
5 16 0.55
6 5 0.17
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.41
Consensus pattern (5 bp):
ATGAT
Found at i:92219994 original size:25 final size:25
Alignment explanation
Indices: 92219960--92220008 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
92219950 GAGGAAGTGC
92219960 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
92219985 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
92220009 TTTGCCCCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:92220275 original size:31 final size:31
Alignment explanation
Indices: 92220240--92220323 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
92220230 CGTTTACAGT
*
92220240 AAAGGCTTTGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
92220271 AAAGGCTTCGGCCTAGTGACATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
92220302 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
92220324 CTGAGATTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:92221863 original size:40 final size:40
Alignment explanation
Indices: 92221809--92221993 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
92221799 CTTGCGCAAG
* * * * *
92221809 GCCTTTGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
92221849 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * **
92221889 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTTGCATGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
92221929 GCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
92221970 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
92221994 CATTCGAATA
Statistics
Matches: 119, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 88 0.74
41 25 0.21
42 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:92221904 original size:80 final size:81
Alignment explanation
Indices: 92221809--92221993 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 81
92221799 CTTGCGCAAG
* *
92221809 GCCTTTGGGTCTTAGCCCGGATGTGGTC-ACTAGCATAAATGCCTTCGGGA-CTTAGCCCGGATA
1 GCCTTTGGGTCTTAGCCCGGATATAG-CAACTAGCATAAATGCCTTC-GGATCTTAGCCCGGATA
* *
92221872 TAGTC-GCTAGCACAAAT
64 TAGTCACCTAGCACAAAA
* * * * *
92221889 GCCTTCGGGTCTTAGCCCGGATATAGCAACTTGCATGAATGCCTTCGGATCTTAGTCCGGTTATA
1 GCCTTTGGGTCTTAGCCCGGATATAGCAACTAGCATAAATGCCTTCGGATCTTAGCCCGGATATA
92221954 GTCACCTAGCACAAAA
66 GTCACCTAGCACAAAA
*
92221970 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTTGGGTCTTAGCCCGGATAT
92221994 CATTCGAATA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 4 0.04
80 55 0.60
81 32 0.35
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (81 bp):
GCCTTTGGGTCTTAGCCCGGATATAGCAACTAGCATAAATGCCTTCGGATCTTAGCCCGGATATA
GTCACCTAGCACAAAA
Found at i:92224490 original size:24 final size:24
Alignment explanation
Indices: 92224458--92224506 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
92224448 TAAGATGTCG
92224458 ATGCCATGTCCTAGACATGGTCTT
1 ATGCCATGTCCTAGACATGGTCTT
*
92224482 ATGCTATGTCCTAGACATGGTCTT
1 ATGCCATGTCCTAGACATGGTCTT
92224506 A
1 A
92224507 CACTGGATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (24 bp):
ATGCCATGTCCTAGACATGGTCTT
Found at i:92227802 original size:48 final size:48
Alignment explanation
Indices: 92227709--92228014 Score: 297
Period size: 48 Copynumber: 6.4 Consensus size: 48
92227699 GAGTGCTGCA
* * ** * * *
92227709 CTTATACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGT
1 CTTACACTAGCTCACATATCGAGGCCGATGCCATGTCCCAAACATGGT
* *
92227757 CTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGACATGGT
1 CTTACACTAGCTCACATATCGAGGCCGATGCCATGTCCCAAACATGGT
* ** * **
92227805 CTTACACTAGCTCTCATATAAATGCCGATGCCATGTTTCAAACATGGT
1 CTTACACTAGCTCACATATCGAGGCCGATGCCATGTCCCAAACATGGT
* * **** * *
92227853 CCTACACTGGCTCACATATCGAGGCCGATATTGTGTCCCAAGCATAGT
1 CTTACACTAGCTCACATATCGAGGCCGATGCCATGTCCCAAACATGGT
* * * ** * * * *
92227901 CTTACATTATCTCTCATATAAATGCCAATGTCATGTTCCAAACATGGT
1 CTTACACTAGCTCACATATCGAGGCCGATGCCATGTCCCAAACATGGT
* *
92227949 CTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGACATGGT
1 CTTACACTAGCTCACATATCGAGGCCGATGCCATGTCCCAAACATGGT
*
92227997 TTTACACTAGCTCACATA
1 CTTACACTAGCTCACATA
92228015 ACCCTAATAT
Statistics
Matches: 199, Mismatches: 59, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
48 199 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (48 bp):
CTTACACTAGCTCACATATCGAGGCCGATGCCATGTCCCAAACATGGT
Found at i:92227836 original size:96 final size:96
Alignment explanation
Indices: 92227709--92228014 Score: 470
Period size: 96 Copynumber: 3.2 Consensus size: 96
92227699 GAGTGCTGCA
*
92227709 CTTATACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
1 CTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
92227774 ATCGAGGCCGATGCCATGTCCCAGACATGGT
66 ATCGAGGCCGATGCCATGTCCCAGACATGGT
* * *
92227805 CTTACACTAGCTCTCATATAAATGCCGATGCCATGTTTCAAACATGGTCCTACACTGGCTCACAT
1 CTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
**** *
92227870 ATCGAGGCCGATATTGTGTCCCA-AGCATAGT
66 ATCGAGGCCGATGCCATGTCCCAGA-CATGGT
* * *
92227901 CTTACATTATCTCTCATATAAATGCCAATGTCATGTTCCAAACATGGTCTTACACTGGCTCACAT
1 CTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
92227966 ATCGAGGCCGATGCCATGTCCCAGACATGGT
66 ATCGAGGCCGATGCCATGTCCCAGACATGGT
* *
92227997 TTTACACTAGCTCACATA
1 CTTACACTAGCTCTCATA
92228015 ACCCTAATAT
Statistics
Matches: 184, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
95 1 0.01
96 182 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (96 bp):
CTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
ATCGAGGCCGATGCCATGTCCCAGACATGGT
Found at i:92237036 original size:46 final size:46
Alignment explanation
Indices: 92236983--92237158 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
92236973 TATTTGGGCA
92236983 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
92237029 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
92237076 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
92237122 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92237159 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 66 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:92237138 original size:93 final size:93
Alignment explanation
Indices: 92236979--92237150 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
92236969 GGGATATTTG
* * *
92236979 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
92237044 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
92237072 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
92237137 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
92237151 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:92243225 original size:18 final size:18
Alignment explanation
Indices: 92243202--92243237 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
92243192 ACACGAGCGT
*
92243202 GTCCCAAGCCACACGGGC
1 GTCCCAACCCACACGGGC
*
92243220 GTCCCAACCCACATGGGC
1 GTCCCAACCCACACGGGC
92243238 ATATGACTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.44, G:0.25, T:0.08
Consensus pattern (18 bp):
GTCCCAACCCACACGGGC
Found at i:92247281 original size:2 final size:2
Alignment explanation
Indices: 92247274--92247301 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
92247264 AGAGAAGATG
92247274 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92247302 GGTCACACCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92249222 original size:27 final size:27
Alignment explanation
Indices: 92249192--92249270 Score: 131
Period size: 27 Copynumber: 2.9 Consensus size: 27
92249182 GTGTCATCAA
* *
92249192 TAAATATGATAGGCACATAGCCATAGG
1 TAAATACGATTGGCACATAGCCATAGG
92249219 TAAATACGATTGGCACATAGCCATAGG
1 TAAATACGATTGGCACATAGCCATAGG
*
92249246 TAAATACGATTGGCACAAAGCCATA
1 TAAATACGATTGGCACATAGCCATA
92249271 ATCAAGATAG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.22
Consensus pattern (27 bp):
TAAATACGATTGGCACATAGCCATAGG
Found at i:92249305 original size:22 final size:22
Alignment explanation
Indices: 92249256--92249315 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
92249246 TAAATACGAT
92249256 TGGCACAAAGCCATAATCAAGA
1 TGGCACAAAGCCATAATCAAGA
* * * * *
92249278 TAGCACAAAGCCATATTTAGGC
1 TGGCACAAAGCCATAATCAAGA
*
92249300 TGGCACAGAGCCATAA
1 TGGCACAAAGCCATAA
92249316 ACAGATTAAG
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.17
Consensus pattern (22 bp):
TGGCACAAAGCCATAATCAAGA
Found at i:92257583 original size:55 final size:53
Alignment explanation
Indices: 92257445--92257647 Score: 203
Period size: 55 Copynumber: 3.8 Consensus size: 53
92257435 TTTGAAACCT
* *
92257445 ACCATTGCCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGGCATGGTCTTACATGGGATCCTTGCCTTATGAACTC
* *
92257498 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGGCATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTC
* ** *** * *
92257553 ATCAATGCCATGTCTTAACATGGTCTTACATGATTTCTTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGGCATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTC
* * *
92257607 ACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGTCTTGGCATGGTCTTACATGGGATCCTT
92257648 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.02
53 44 0.36
54 8 0.07
55 68 0.55
56 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGGCATGGTCTTACATGGGATCCTTGCCTTATGAACTC
Found at i:92262988 original size:40 final size:40
Alignment explanation
Indices: 92262944--92263162 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
92262934 TGATATAACG
*
92262944 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCCGGTT-TAGTA
* * **
92262984 ACTCGCACGAATGCCTTCGGGACTTAACCTGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCCGGTTTAGTA
92263024 ACTCGCACAAATGCCTTCGGGAC-AAACCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCCGGTT-TAGTA
* * *
92263064 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCCGGTTTAGTA
* *
92263104 ACTCGCACAAATGCCTTCGGG-CTTAA-CCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCCGG-TTTAGTA
* *
92263143 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
92263163 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 4 0.03
39 37 0.23
40 100 0.63
41 17 0.11
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCCGGTTTAGTA
Found at i:92263050 original size:80 final size:80
Alignment explanation
Indices: 92262944--92263162 Score: 354
Period size: 80 Copynumber: 2.8 Consensus size: 80
92262934 TGATATAACG
*
92262944 ACTCGCTCAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTT
*
92263009 AACCTGGGTTTAGTA
66 AACCCGGGTTTAGTA
92263024 ACTCGCACAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTT
92263089 AACCCGGGTTTAGTA
66 AACCCGGGTTTAGTA
* * *
92263104 ACTCGCACAAATGCCTTCGGG-CTTAA-CCCGGATT-TATTAACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCACGAATGCCTTCGG
92263163 ATCTTAGTCC
Statistics
Matches: 132, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
79 29 0.22
80 103 0.78
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTT
AACCCGGGTTTAGTA
Found at i:92263206 original size:119 final size:120
Alignment explanation
Indices: 92262951--92263214 Score: 284
Period size: 119 Copynumber: 2.2 Consensus size: 120
92262941 ACGACTCGCT
* * * *
92262951 CAAATGCCTTCGGGAC-AAACCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTTAACCTG
1 CAAA-GCCTTCGGGACTTAACCCGGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * * **
92263015 GGTTTAGTAACTCGCACAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCGCA
65 GATTTAGTAACTCGCACAAACGCCTTCGGGACAAACCCCGGATATAGTAACTAACA
*
92263071 CGAATGCCTTCGGGACTTAACCCGGGTT-TAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCG
1 C-AAAGCCTTCGGGACTTAACCCGGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * ** ** * * *
92263134 GATTTATTAACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAATA
65 GATTTAGTAACTCGCACAAACGCCTTCGGGA-CAAACCCCGGATATAGTAAC-TAACA
*
92263191 CAAAGCCTTCGGGACTTAGCCCGG
1 CAAAGCCTTCGGGACTTAACCCGG
92263215 ACATCATTCA
Statistics
Matches: 119, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
118 3 0.03
119 65 0.55
120 40 0.34
121 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAAGCCTTCGGGACTTAACCCGGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCACAAACGCCTTCGGGACAAACCCCGGATATAGTAACTAACA
Found at i:92274179 original size:49 final size:50
Alignment explanation
Indices: 92274124--92274356 Score: 265
Period size: 49 Copynumber: 4.7 Consensus size: 50
92274114 ATCTATTGTG
* *
92274124 AGGTCACGTGTGTAGTACTAAGTCCAGGCTACTACATGTACCAGATTATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* *** *
92274174 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAA-TT
* * * * **
92274224 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* *
92274274 AGGTCACGCGTGTAGTACTAAGTGCAGGCTACTACATATACC-GAATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAG-ATAATT
* * *
92274324 -GGTCGCATGTGTAGTACTAAGTGCAGGATACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
92274357 TGCGTACCAG
Statistics
Matches: 153, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
49 70 0.46
50 44 0.29
51 39 0.25
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
Found at i:92279912 original size:2 final size:2
Alignment explanation
Indices: 92279907--92279937 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
92279897 CATATATAGG
92279907 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92279938 GCCTTATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:92281176 original size:48 final size:48
Alignment explanation
Indices: 92281102--92281668 Score: 792
Period size: 48 Copynumber: 12.0 Consensus size: 48
92281092 AGATAAATAT
92281102 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
92281150 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
92281198 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* * *
92281248 ATATGTATATTTGGTAAAGTCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
92281298 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
92281346 ATATGTATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
92281394 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGGAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
92281442 ATATGTATATGTGGTAAAGGCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
92281490 ATATGTATATGTGGT---G-TGAA---ATATATATGAGATATG--T---
1 ATATGTATATGTGGTAAAGCCGAATGGCTA-ATGTGAAATATGTATGAG
* *
92281527 AT------ATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
92281571 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
92281619 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
92281667 AT
1 AT
92281669 GTGTGTATAT
Statistics
Matches: 471, Mismatches: 25, Indels: 46
0.87 0.05 0.08
Matches are distributed among these distances:
31 7 0.01
34 1 0.00
35 3 0.01
37 5 0.01
38 3 0.01
39 4 0.01
40 1 0.00
41 3 0.01
42 10 0.02
44 5 0.01
45 1 0.00
48 304 0.65
49 6 0.01
50 118 0.25
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:92281508 original size:31 final size:31
Alignment explanation
Indices: 92281473--92281535 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
92281463 GAATGGCTAA
*
92281473 TGTGAAATATGTATGAGATATGTATATGTGG
1 TGTGAAATATATATGAGATATGTATATGTGG
92281504 TGTGAAATATATATGAGATATGTATATGTGG
1 TGTGAAATATATATGAGATATGTATATGTGG
92281535 T
1 T
92281536 AAAGCCGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (31 bp):
TGTGAAATATATATGAGATATGTATATGTGG
Found at i:92281513 original size:79 final size:81
Alignment explanation
Indices: 92281425--92281585 Score: 263
Period size: 79 Copynumber: 2.0 Consensus size: 81
92281415 GAATGGCTAA
* * * *
92281425 TGTGGAATATGTATGAGATATGTATATGTGGTAAAGGCGAATGGCTAATGTG-AA-ATATGTATG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
92281488 AGATATGTATATGTGG
66 AGATATGTATATGTGG
*
92281504 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
92281569 AGATATGTATATGTGG
66 AGATATGTATATGTGG
92281585 T
1 T
92281586 AAAGCCGAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
79 48 0.64
80 2 0.03
81 25 0.33
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (81 bp):
TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
AGATATGTATATGTGG
Found at i:92281617 original size:129 final size:127
Alignment explanation
Indices: 92281377--92281633 Score: 442
Period size: 129 Copynumber: 2.0 Consensus size: 127
92281367 GAATGGCCAA
* * *
92281377 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGGAATATGTATGAG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
92281442 ATATGTATATGTGGTAAAGGCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
66 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
*
92281504 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATG
*
92281569 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGG
64 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
92281633 T
1 T
92281634 AAAGCCGAAT
Statistics
Matches: 122, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
127 50 0.41
128 1 0.01
129 71 0.58
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.33
Consensus pattern (127 bp):
TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
Found at i:92281624 original size:177 final size:175
Alignment explanation
Indices: 92281329--92281668 Score: 581
Period size: 177 Copynumber: 1.9 Consensus size: 175
92281319 GAATGGCTAA
* *
92281329 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATGAG
*
92281394 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGGAATATGTATGAGATATGTATATGTGGTAA
66 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
92281459 AGGCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
131 AGCCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGG
* *
92281504 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTG-AA-ATATATATG
*
92281569 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
64 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
92281634 AAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
129 AAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
92281669 GTGTGTATAT
Statistics
Matches: 154, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
175 49 0.32
176 2 0.01
177 103 0.67
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (175 bp):
TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATGAG
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGG
Found at i:92281864 original size:37 final size:37
Alignment explanation
Indices: 92281809--92281911 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
92281799 GGAAATATAT
92281809 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
92281846 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
92281883 CCCGGGTAAGACTCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
92281912 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:92284762 original size:79 final size:80
Alignment explanation
Indices: 92284618--92284799 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 80
92284608 GCTACTCGTT
* **
92284618 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
92284682 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* **
92284698 CCAATA-CCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTC-TGATCTTAGTCC
1 -CAA-AGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
92284760 GGATATAGTCACTTAGCA
63 GGATATAGTAACTTAGCA
92284778 CAAAGCCTTCGGGACTTAGCCC
1 CAAAGCCTTCGGGACTTAGCCC
92284800 GGACATCATT
Statistics
Matches: 86, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 22 0.26
81 3 0.03
82 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:92284802 original size:40 final size:40
Alignment explanation
Indices: 92284599--92284802 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
92284589 TCGGATTTAA
** *
92284599 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92284639 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
92284679 CCGGATTTAGTAACTCGCACCAATACCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
92284718 CCAGA-ATTAGTAACTCGCACAAATGCCTTC-TGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
92284758 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
92284798 CCGGA
1 CCGGA
92284803 CATCATTCGA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 31 0.23
40 93 0.68
41 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:92285336 original size:26 final size:26
Alignment explanation
Indices: 92285276--92285336 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
92285266 GTACTTAGCC
*
92285276 CATATATACATTAGGCATTAGAGTCA
1 CATATATATATTAGGCATTAGAGTCA
92285302 CATATATATATTAGGCATTAGAGTCA
1 CATATATATATTAGGCATTAGAGTCA
92285328 CATATATAT
1 CATATATAT
92285337 GGAATCATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (26 bp):
CATATATATATTAGGCATTAGAGTCA
Found at i:92286083 original size:14 final size:14
Alignment explanation
Indices: 92286059--92286094 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
92286049 AACATGAGAG
92286059 CTTTT-TTCTTTTT
1 CTTTTCTTCTTTTT
92286072 CTTTTCTTCTTTTT
1 CTTTTCTTCTTTTT
92286086 C-TTTCTTCT
1 CTTTTCTTCT
92286095 ATTCGGCTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (14 bp):
CTTTTCTTCTTTTT
Found at i:92286129 original size:60 final size:59
Alignment explanation
Indices: 92286011--92286141 Score: 142
Period size: 60 Copynumber: 2.2 Consensus size: 59
92286001 CTCAAAGCTC
* * ** *
92286011 TTTTTCCTTCTTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAGCTTTTTTCTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAGATGATCTCTTT
* * *
92286070 TTCTTTTCTTCTTTTTCTTTCTTCTATTCGG-CTAGAAGAAGCATGA-ATGATGATCTCTTT
1 TT-TTTTCTTCTTTTTCTTTCTTCTACTCGGCCAAGAACAA-CATGAGA-GATGATCTCTTT
92286130 TTTTTTC-TCTTT
1 TTTTTTCTTCTTT
92286142 CACCATCCTA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
58 5 0.08
59 15 0.25
60 41 0.67
ACGTcount: A:0.16, C:0.21, G:0.11, T:0.53
Consensus pattern (59 bp):
TTTTTTCTTCTTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAGATGATCTCTTT
Found at i:92288644 original size:40 final size:40
Alignment explanation
Indices: 92288561--92288662 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
92288551 TGCTAGTGGC
* * **
92288561 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* *
92288601 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* * *
92288641 ATCCGGGTTAAGTCCCGTAGGC
1 ATCCGGGCTAAGACCCGAAGGC
92288663 CTTGGTGCGG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
Found at i:92296752 original size:40 final size:39
Alignment explanation
Indices: 92296587--92296770 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
92296577 AAATTGAATG
* * *
92296587 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
92296627 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
92296667 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
92296707 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
92296746 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
92296771 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:92296795 original size:80 final size:81
Alignment explanation
Indices: 92296627--92296815 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
92296617 GCTGGAAATT
* * * *
92296627 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
92296692 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
92296708 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
92296771 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
92296787 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
92296816 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:92299607 original size:43 final size:42
Alignment explanation
Indices: 92299556--92299657 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 42
92299546 CTTACATGGG
* *
92299556 ATCACATATCGATGCTGATAG-CCCAG-CTATAGTCTTACACGAT
1 ATCACATATCGATGC-CAT-GTCCCAGAC-ATAGTCTTACACGAA
* * *
92299599 GTCTCATATCGATGCCATGTCCCAGACATGGTCTTACACGAA
1 ATCACATATCGATGCCATGTCCCAGACATAGTCTTACACGAA
92299641 ATCACATATCGATGCCA
1 ATCACATATCGATGCCA
92299658 ATGCCATATC
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.02
42 35 0.70
43 14 0.28
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (42 bp):
ATCACATATCGATGCCATGTCCCAGACATAGTCTTACACGAA
Found at i:92299681 original size:48 final size:47
Alignment explanation
Indices: 92299518--92299742 Score: 173
Period size: 48 Copynumber: 4.9 Consensus size: 47
92299508 TACATAGTAA
* *
92299518 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATG-CATATCCTAGATATGGTCTTACACGAGATCACATATC
* * * * *
92299566 GATG-C--TG-ATAGCCCAGCTATAGTCTTACACGATG-TCTCATATC
1 GATGCCAATGCATATCCTAGATATGGTCTTACACGA-GATCACATATC
* * *
92299609 GATGCC-ATG----TCCCAGACATGGTCTTACACGAAATCACATATC
1 GATGCCAATGCATATCCTAGATATGGTCTTACACGAGATCACATATC
* * * *
92299651 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCGCATATT
1 GATGCCAATG-CATATCCTAGATATGGTCTTACACGAGATCACATATC
* * * * *
92299699 GATGCCAATGCTATGTCCTAGACATGTTCTTACATGGGATCACA
1 GATGCCAATGC-ATATCCTAGATATGGTCTTACACGAGATCACA
92299743 CATAACCCTA
Statistics
Matches: 142, Mismatches: 24, Indels: 22
0.76 0.13 0.12
Matches are distributed among these distances:
42 32 0.23
43 34 0.24
44 2 0.01
45 4 0.03
47 2 0.01
48 68 0.48
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCCAATGCATATCCTAGATATGGTCTTACACGAGATCACATATC
Found at i:92302346 original size:15 final size:15
Alignment explanation
Indices: 92302326--92302355 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
92302316 CCATGAAAGG
92302326 AAATCCAAGATAAGA
1 AAATCCAAGATAAGA
92302341 AAATCCAAGATAAGA
1 AAATCCAAGATAAGA
92302356 TACCATACCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.13, G:0.13, T:0.13
Consensus pattern (15 bp):
AAATCCAAGATAAGA
Found at i:92306097 original size:41 final size:41
Alignment explanation
Indices: 92306041--92306127 Score: 167
Period size: 41 Copynumber: 2.1 Consensus size: 41
92306031 AATTCTCATA
92306041 TACAT-AGTAAGATGCCAATGCCATATCCTAGATATGGTCT
1 TACATGAGTAAGATGCCAATGCCATATCCTAGATATGGTCT
92306081 TACATGAGTAAGATGCCAATGCCATATCCTAGATATGGTCT
1 TACATGAGTAAGATGCCAATGCCATATCCTAGATATGGTCT
92306122 TACATG
1 TACATG
92306128 GGATCACATA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 5 0.11
41 41 0.89
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (41 bp):
TACATGAGTAAGATGCCAATGCCATATCCTAGATATGGTCT
Found at i:92306271 original size:48 final size:48
Alignment explanation
Indices: 92306092--92306272 Score: 141
Period size: 48 Copynumber: 4.0 Consensus size: 48
92306082 ACATGAGTAA
* *
92306092 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * * ** *
92306140 GATGCC---G--ATAGCCCAGCTATTGTCTTACA--CGATGTCTTAT-
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * **
92306180 -AT--CAATTCCATGTCCCAGACATGGTCTTACATGAAATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* *
92306225 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCGCATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
92306273 CATCCATAAG
Statistics
Matches: 96, Mismatches: 26, Indels: 22
0.67 0.18 0.15
Matches are distributed among these distances:
37 1 0.01
39 2 0.02
41 7 0.07
42 17 0.18
43 18 0.19
44 6 0.06
45 1 0.01
46 2 0.02
48 42 0.44
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
Found at i:92307023 original size:42 final size:42
Alignment explanation
Indices: 92306899--92307079 Score: 125
Period size: 42 Copynumber: 4.1 Consensus size: 42
92306889 TAAGATGCCA
* * ** *
92306899 ATGCCATATCCTAGATATGGTCTTACATGGGATCACATATTG
1 ATGCCATGTCCTAGACATGGTCTTACATGAAATCACATATCG
* * **
92306941 ATGCCGATAG-CCTAG-CTATTGTCTTACACGATGT-ATCATATCG
1 ATGCC-AT-GTCCTAGAC-ATGGTCTTACATGAAATCA-CATATCG
*
92306984 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCG
1 ATGCCATGTCCTAGACATGGTCTTACATGAAATCACATATCG
* ** *
92307026 ATGCCAATGCCATATCCTAGATATGGTCTTACATGGTATCGCATATCG
1 ATGCC-ATG-----TCCTAGACATGGTCTTACATGAAATCACATATCG
92307074 ATGCCA
1 ATGCCA
92307080 ATGCCATGTC
Statistics
Matches: 108, Mismatches: 18, Indels: 21
0.73 0.12 0.14
Matches are distributed among these distances:
41 1 0.01
42 37 0.34
43 35 0.32
47 1 0.01
48 34 0.31
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (42 bp):
ATGCCATGTCCTAGACATGGTCTTACATGAAATCACATATCG
Found at i:92307055 original size:48 final size:48
Alignment explanation
Indices: 92306892--92307086 Score: 180
Period size: 48 Copynumber: 4.3 Consensus size: 48
92306882 TACATAGTAA
** *
92306892 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATATCCTAGATATGGTCTTACATGATATCACATATC
* * * * *
92306940 GATGCC---G--ATAGCCTAGCTATTGTCTTACACGATGT-ATCATATC
1 GATGCCAATGCCATATCCTAGATATGGTCTTACATGATATCA-CATATC
* * *
92306983 GATGCC-ATG-----TCCCAGACATGGTCTTACATGAAATCACATATC
1 GATGCCAATGCCATATCCTAGATATGGTCTTACATGATATCACATATC
* *
92307025 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGTATCGCATATC
1 GATGCCAATGCCATATCCTAGATATGGTCTTACATGATATCACATATC
92307073 GATGCCAATGCCAT
1 GATGCCAATGCCAT
92307087 GTCTCAGGCA
Statistics
Matches: 116, Mismatches: 21, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
42 30 0.26
43 36 0.31
45 2 0.02
48 48 0.41
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (48 bp):
GATGCCAATGCCATATCCTAGATATGGTCTTACATGATATCACATATC
Found at i:92307104 original size:48 final size:47
Alignment explanation
Indices: 92306984--92307116 Score: 167
Period size: 48 Copynumber: 2.8 Consensus size: 47
92306974 TATCATATCG
*
92306984 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCA
1 ATGCCATGT-CCAGACATGGTCTTACATGGAATCACATATCGATGCCA
* * * *
92307032 ATGCCATATCCTAGATATGGTCTTACATGGTATCGCATATCGATGCCA
1 ATGCCATGTCC-AGACATGGTCTTACATGGAATCACATATCGATGCCA
* * *
92307080 ATGCCATGTCTCAGGCATGTTCTTACATGGGATCACA
1 ATGCCATGTC-CAGACATGGTCTTACATGGAATCACA
92307117 CATAACCCTA
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
47 2 0.03
48 69 0.96
49 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (47 bp):
ATGCCATGTCCAGACATGGTCTTACATGGAATCACATATCGATGCCA
Found at i:92308276 original size:33 final size:32
Alignment explanation
Indices: 92308239--92308302 Score: 110
Period size: 33 Copynumber: 2.0 Consensus size: 32
92308229 ACCTTTATGC
*
92308239 CTTAAATTGAAAATGATTTTTATATAAGGGGAG
1 CTTAAATTGAAAATGAATTTTAT-TAAGGGGAG
92308272 CTTAAATTGAAAATGAATTTTATTAAGGGGA
1 CTTAAATTGAAAATGAATTTTATTAAGGGGA
92308303 AGCAATCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 8 0.27
33 22 0.73
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.36
Consensus pattern (32 bp):
CTTAAATTGAAAATGAATTTTATTAAGGGGAG
Found at i:92308703 original size:20 final size:20
Alignment explanation
Indices: 92308655--92308703 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
92308645 ATTGATCCAA
* *
92308655 TATCGATATTTTTCTTAAGG
1 TATCGATATATTTCCTAAGG
*
92308675 TATCAATATATTTCCTAAGG
1 TATCGATATATTTCCTAAGG
*
92308695 TATTGATAT
1 TATCGATAT
92308704 TCCTGCTCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (20 bp):
TATCGATATATTTCCTAAGG
Found at i:92310719 original size:40 final size:39
Alignment explanation
Indices: 92310682--92310864 Score: 221
Period size: 40 Copynumber: 4.7 Consensus size: 39
92310672 GCTACTCGTT
* *
92310682 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
* *
92310722 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
92310762 CAAATGCCTTCGGG-CTTAGCCCGAATTAGTAA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * *
92310799 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
92310840 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92310865 CATCATTCGA
Statistics
Matches: 124, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
36 2 0.02
37 16 0.13
38 17 0.14
39 14 0.11
40 63 0.51
41 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:92310848 original size:77 final size:80
Alignment explanation
Indices: 92310682--92310862 Score: 228
Period size: 77 Copynumber: 2.3 Consensus size: 80
92310672 GCTACTCGTT
* ** *
92310682 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
92310747 ATTTAGTAACTCGCA
66 ATATAGTAACTAGCA
**
92310762 CAAATGCCTTCGGG-CTTAGCCCGAAT-TAGTAA-TCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
*
92310823 GATATAGTCACTTAGCA
65 GATATAGTAAC-TAGCA
92310840 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
92310863 GACATCATTC
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
76 3 0.03
77 40 0.45
78 23 0.26
79 9 0.10
80 14 0.16
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:92314916 original size:30 final size:30
Alignment explanation
Indices: 92314880--92314980 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
92314870 GACAAGATTG
* * *
92314880 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
92314910 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
92314938 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
92314967 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
92314981 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:92314992 original size:29 final size:28
Alignment explanation
Indices: 92314909--92314984 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
92314899 AAAATTGTAC
* *
92314909 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
92314937 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
92314966 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
92314985 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:92322081 original size:79 final size:82
Alignment explanation
Indices: 92321970--92322154 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
92321960 GCTACTCGTT
* * * * *
92321970 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCATAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTC-AGATCTTAACCC
* *
92322033 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACGTAGCA
**
92322050 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTAAATCGCACAAATGCCTTCAGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTCAGATCTTAACCCG
*
92322113 GATATAGTCACGTAGCA
66 GATATAGTAACGTAGCA
92322130 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92322155 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 55 0.60
80 34 0.37
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTCAGATCTTAACCCG
GATATAGTAACGTAGCA
Found at i:92322154 original size:40 final size:40
Alignment explanation
Indices: 92321951--92322154 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
92321941 CGAAATTTAA
** *
92321951 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
92321991 CCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
92322031 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
92322070 CCGGA-ATTAGTAAATCGCACAAATGCCTTC-AGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
92322110 CCGGATATAGTCACGTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
92322150 CCGGA
1 CCGGA
92322155 CATCATTCGA
Statistics
Matches: 139, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
39 38 0.27
40 90 0.65
41 11 0.08
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:92322875 original size:2 final size:2
Alignment explanation
Indices: 92322868--92322897 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
92322858 TCACGTGCAA
92322868 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92322898 GCAAGAGCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92324516 original size:23 final size:23
Alignment explanation
Indices: 92324486--92324568 Score: 139
Period size: 23 Copynumber: 3.6 Consensus size: 23
92324476 GGTTATGCCT
*
92324486 CACACGCCCGTGTGGAGACAAAG
1 CACACGCCCGTGTGGAGGCAAAG
92324509 CACACGCCCGTGTGGAGGCAAAG
1 CACACGCCCGTGTGGAGGCAAAG
92324532 CACACGCCCGTGTGGAGGCAAAG
1 CACACGCCCGTGTGGAGGCAAAG
* *
92324555 CACATGTCCGTGTG
1 CACACGCCCGTGTG
92324569 CTTAGGGACA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.25, C:0.30, G:0.33, T:0.12
Consensus pattern (23 bp):
CACACGCCCGTGTGGAGGCAAAG
Found at i:92331530 original size:21 final size:20
Alignment explanation
Indices: 92331488--92331531 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
92331478 TTTTTGACAA
* *
92331488 GAATTTAATCGAATTTGCAT
1 GAATTTAATAGAATTAGCAT
*
92331508 GAATTTAAGTAGAATTAGTAT
1 GAATTTAA-TAGAATTAGCAT
92331529 GAA
1 GAA
92331532 AAAGTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (20 bp):
GAATTTAATAGAATTAGCAT
Found at i:92344601 original size:43 final size:43
Alignment explanation
Indices: 92344540--92344627 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
92344530 ACACTTTTAC
92344540 AATTTAGTCCTAAGACTCGTATAATGAAATGCATGAAATTTCT
1 AATTTAGTCCTAAGACTCGTATAATGAAATGCATGAAATTTCT
92344583 AATTTAGTCCTAAGACTCGTATAATGAAATGCATGAAATTTCT
1 AATTTAGTCCTAAGACTCGTATAATGAAATGCATGAAATTTCT
92344626 AA
1 AA
92344628 GTTACCCAAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (43 bp):
AATTTAGTCCTAAGACTCGTATAATGAAATGCATGAAATTTCT
Found at i:92346959 original size:44 final size:44
Alignment explanation
Indices: 92346908--92346994 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
92346898 TTCGGTTATG
* *
92346908 TATTGGCACTTGGTGTGTGAAATTGAAATAGCT-TCGGCTATATT
1 TATTGGCACTTAGTGTGCGAAATTGAAATAGCTCT-GGCTATATT
** *
92346952 TATTGGCACTTAGTGTGCGTGATTGAGATAGCTCTGGCTATAT
1 TATTGGCACTTAGTGTGCGAAATTGAAATAGCTCTGGCTATAT
92346995 ATATAGATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
44 36 0.97
45 1 0.03
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.38
Consensus pattern (44 bp):
TATTGGCACTTAGTGTGCGAAATTGAAATAGCTCTGGCTATATT
Found at i:92349481 original size:5 final size:5
Alignment explanation
Indices: 92349452--92349501 Score: 57
Period size: 5 Copynumber: 10.0 Consensus size: 5
92349442 TATAAATTTA
* * *
92349452 ATTAT GTTAA ATTAT AATA- ATTAT ATTAT AATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT -ATTAT ATTAT ATTAT ATTAT
92349502 GATATAAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
4 3 0.08
5 29 0.78
6 5 0.14
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (5 bp):
ATTAT
Found at i:92349941 original size:3 final size:3
Alignment explanation
Indices: 92349935--92349960 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
92349925 ATTATTATTA
92349935 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
92349961 AACTAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:92350074 original size:12 final size:12
Alignment explanation
Indices: 92350043--92350076 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
92350033 AAACAGGGGG
92350043 AAAGGAAAGAAGA
1 AAAGGAAA-AAGA
92350056 AAA-GAAAAAGA
1 AAAGGAAAAAGA
92350067 AAAGGAAAAA
1 AAAGGAAAAA
92350077 CTAGGGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 7 0.35
12 10 0.50
13 3 0.15
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAGGAAAAAGA
Found at i:92350773 original size:11 final size:11
Alignment explanation
Indices: 92350742--92350811 Score: 54
Period size: 11 Copynumber: 6.2 Consensus size: 11
92350732 TATTGGTTGA
*
92350742 AATTGAAAGTG
1 AATTGAAATTG
*
92350753 -ATTCAAATTG
1 AATTGAAATTG
92350763 AATTGAAATTG
1 AATTGAAATTG
92350774 AATTGAGCAATTG
1 AATTGA--AATTG
*
92350787 AGA-TGCATATTG
1 A-ATTG-AAATTG
*
92350799 ATTTGAAATTG
1 AATTGAAATTG
92350810 AA
1 AA
92350812 AAGTCATTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
10 8 0.17
11 21 0.46
12 7 0.15
13 8 0.17
14 2 0.04
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.34
Consensus pattern (11 bp):
AATTGAAATTG
Found at i:92352301 original size:40 final size:40
Alignment explanation
Indices: 92352233--92352395 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
92352223 CGGGATTTAA
** *
92352233 CCGGATATAAC-ACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
92352272 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
92352312 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
92352352 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
92352392 CCGG
1 CCGG
92352396 GTATCATTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
39 9 0.09
40 93 0.89
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:92352355 original size:80 final size:79
Alignment explanation
Indices: 92352219--92352395 Score: 205
Period size: 80 Copynumber: 2.2 Consensus size: 79
92352209 GAATCACGTA
* * * **
92352219 CCTTCGGGATTTA-ACCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
* *
92352283 AACTTGCACAATTG
66 AACTAGCACAAATG
* ** *
92352297 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAAC-ACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
92352361 ATCACTAGCATAAATG
64 ATAACTAGCACAAATG
92352377 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
92352396 GTATCATTCA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 11 0.13
79 11 0.13
80 58 0.71
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATG
Found at i:92354230 original size:29 final size:29
Alignment explanation
Indices: 92354174--92354231 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
92354164 GAAATGTATA
* *
92354174 TTGATTGAAAAGTGAATAGTGAATTGAAT
1 TTGATTGAAAAGTGAATAGAGAAGTGAAT
*
92354203 TTGATTG-AAAGTGAATTGAGAAAGTGAAT
1 TTGATTGAAAAGTGAATAGAG-AAGTGAAT
92354232 CGAATACCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.41, C:0.00, G:0.26, T:0.33
Consensus pattern (29 bp):
TTGATTGAAAAGTGAATAGAGAAGTGAAT
Found at i:92354597 original size:18 final size:19
Alignment explanation
Indices: 92354576--92354616 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
92354566 GATGAAATGA
92354576 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
92354594 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
92354613 GAAA
1 GAAA
92354617 GCATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:92356360 original size:29 final size:27
Alignment explanation
Indices: 92356315--92356387 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 27
92356305 TCTAAACAAG
*
92356315 AACCCAAAATCCTAAACTTGT-AACCCA
1 AACCCAAACTCCTAAACTT-TAAACCCA
*
92356342 TAACTCCAAACTCTTAAACTTTAAACCCA
1 -AAC-CCAAACTCCTAAACTTTAAACCCA
92356371 AACCTCAAACTCC-AAAC
1 AACC-CAAACTCCTAAAC
92356388 CCTTAATCTC
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 5 0.13
28 14 0.36
29 20 0.51
ACGTcount: A:0.44, C:0.34, G:0.01, T:0.21
Consensus pattern (27 bp):
AACCCAAACTCCTAAACTTTAAACCCA
Found at i:92357541 original size:20 final size:21
Alignment explanation
Indices: 92357516--92357554 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
92357506 TTTTTTTTCT
*
92357516 TTTAC-TTTTCCTCCAAAACA
1 TTTACTTTTTCCTACAAAACA
92357536 TTTACTTTTTCCTACAAAA
1 TTTACTTTTTCCTACAAAA
92357555 TGTTACTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTACTTTTTCCTACAAAACA
Found at i:92358052 original size:11 final size:11
Alignment explanation
Indices: 92358036--92358062 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
92358026 AAATATATTC
92358036 AATTCGATTTG
1 AATTCGATTTG
92358047 AATTCGATTTG
1 AATTCGATTTG
92358058 AATTC
1 AATTC
92358063 CATCTCACTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (11 bp):
AATTCGATTTG
Found at i:92358450 original size:14 final size:14
Alignment explanation
Indices: 92358431--92358461 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
92358421 TAAAAAATCT
*
92358431 AATAAATATATAAA
1 AATAAATAAATAAA
92358445 AATAAATAAATAAA
1 AATAAATAAATAAA
92358459 AAT
1 AAT
92358462 TAAGAATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAAATAAATAAA
Done.