Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 296 of 433
Found at i:92363247 original size:40 final size:39
Alignment explanation
Indices: 92363087--92363249 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
92363077 TGTGTATGAA
*
92363087 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
92363126 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
92363165 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
92363204 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
92363244 TGTGCG
1 TGTGCG
92363250 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:92363265 original size:40 final size:39
Alignment explanation
Indices: 92363087--92363280 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
92363077 TGTGTATGAA
* *
92363087 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
92363126 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
92363165 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
92363204 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
92363244 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
92363281 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:92370576 original size:40 final size:40
Alignment explanation
Indices: 92370493--92370649 Score: 188
Period size: 41 Copynumber: 3.9 Consensus size: 40
92370483 TCCATAATTC
* *
92370493 TTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCG
1 TTTTACCAAAAACGCCGCTATTGCTCT-GTTTTTAGCGGCG
*
92370534 TTTTACCAAAAATGCCGCTATTGCTCTGTTTTTAGCGGCG
1 TTTTACCAAAAACGCCGCTATTGCTCTGTTTTTAGCGGCG
* * *
92370574 TTTTAACAAAAAACGCCACTATTGCTCTGTTTTTAGCGGTG
1 TTTT-ACCAAAAACGCCGCTATTGCTCTGTTTTTAGCGGCG
**** *
92370615 TTTTTTGTAAAACGCCGCTATTGCTCCGTGTTTTA
1 TTTTACCAAAAACGCCGCTATTGCTCTGT-TTTTA
92370650 TAATTTTTGC
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
40 36 0.36
41 65 0.64
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (40 bp):
TTTTACCAAAAACGCCGCTATTGCTCTGTTTTTAGCGGCG
Found at i:92370688 original size:12 final size:12
Alignment explanation
Indices: 92370673--92370698 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
92370663 TTTTTTTGAT
92370673 AAAACGCCGCTA
1 AAAACGCCGCTA
92370685 AAAACGCCGCTA
1 AAAACGCCGCTA
92370697 AA
1 AA
92370699 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:92384531 original size:44 final size:45
Alignment explanation
Indices: 92384477--92384580 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 45
92384467 GGAGTAGTAA
*
92384477 TGGAGCAGATTGAAG-TCGTAGATCTTATC-TCCTTGAAGTTACAG
1 TGGAGCAGATTGAAGATCGTAGATCTTATCTTCC-TAAAGTTACAG
* * * *
92384521 TGGAGTAGATTGAAGATGGTGGATCTTATCTTCCTAAAGTTGCAG
1 TGGAGCAGATTGAAGATCGTAGATCTTATCTTCCTAAAGTTACAG
92384566 TGGAGCAGATTGAAG
1 TGGAGCAGATTGAAG
92384581 CCATCAGCCT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
44 14 0.27
45 35 0.67
46 3 0.06
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.31
Consensus pattern (45 bp):
TGGAGCAGATTGAAGATCGTAGATCTTATCTTCCTAAAGTTACAG
Found at i:92384751 original size:44 final size:45
Alignment explanation
Indices: 92384688--92385044 Score: 143
Period size: 45 Copynumber: 7.8 Consensus size: 45
92384678 TATGGAGAGT
* * * *
92384688 CTTATCTTCCTGAAGTTACAGTGAAGCAGATTGAAG-CCACCAGC
1 CTTATCTCCCTGAAGTTACAGTGAAGCAGATTGAAGACAACAAAC
* * * *
92384732 CTTATCTCCCT-AGAGTTACAGTGGAGTAGACTGAAGACAACAAAT
1 CTTATCTCCCTGA-AGTTACAGTGAAGCAGATTGAAGACAACAAAC
* * * **** * *
92384777 CTCATCTCCCTGAAGTAACAATGAAGCAGATTGAAG-TTGTAGAT
1 CTTATCTCCCTGAAGTTACAGTGAAGCAGATTGAAGACAACAAAC
* * ** * *
92384821 CTTATCTCCTTGAAGTTGCAGTGGAA-CAGATCAAAGATAACAAAT
1 CTTATCTCCCTGAAGTTACAGT-GAAGCAGATTGAAGACAACAAAC
* * * * * *
92384866 CTTATTTCCCTGACGTTGCAGTGGAA-CAGATTAAAGCTACAAATTATGGCGAAT
1 CTTATCTCCCTGAAGTTACAGT-GAAGCAGATTGAAG--AC--A--A---CAAAC
* * * * *
92384920 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CCACGAGC
1 CTTATCTCCCTGAAGTTACAGTGAAGCAGATTGAAGACAACAAAC
* * * * * *
92384964 CTTATCTCCCTGAAGTTGCAGAGGAGCAGACTGAAGA-AAGAAAAT
1 CTTATCTCCCTGAAGTTACAGTGAAGCAGATTGAAGACAA-CAAAC
* * * * *
92385009 CTCATCTCCCTAAAGTAACAGTGGAGTAGATTGAAG
1 CTTATCTCCCTGAAGTTACAGTGAAGCAGATTGAAG
92385045 TTGTAGATCT
Statistics
Matches: 239, Mismatches: 57, Indels: 33
0.73 0.17 0.10
Matches are distributed among these distances:
43 1 0.00
44 96 0.40
45 101 0.42
46 1 0.00
47 2 0.01
49 1 0.00
51 2 0.01
53 2 0.01
54 33 0.14
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTACAGTGAAGCAGATTGAAGACAACAAAC
Found at i:92384887 original size:232 final size:232
Alignment explanation
Indices: 92384621--92385139 Score: 711
Period size: 232 Copynumber: 2.2 Consensus size: 232
92384611 AGAGCAGACT
* * *
92384621 AAAGACAGA-AAATCTTACTTCCCTGACATTGCAGTGGAACAAATTAAAGCTATAAATTATGGAG
1 AAAGACA-ACAAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCTATAAATTATGGAG
* *
92384685 AGTCTTATCTTCCTGAAGTTACAGTGAAGCAGATTGAAGCCACCAGCCTTATCTCCCT-AGAGTT
65 AATCTTATCTCCCTGAAGTTACAGTGAAGCAGATTGAAGCCACCAGCCTTATCTCCCTGA-AGTT
* * * *
92384749 ACAGTGGAGTAGACTGAAGACAA-CAAATCTCATCTCCCTGAAGTAACAATGAAGCAGATTGAAG
129 ACAGAGGAGCAGACTGAAGA-AAGAAAATCTCATCTCCCTAAAGTAACAATGAAGCAGATTGAAG
* *
92384813 TTGTAGATCTTATCTCCTTGAAGTTGCAGTGGAACAGATC
193 TTGTAGATCTTATCTCCTTGAAGTTGAAGTGGAACAAATC
* * *
92384853 AAAGATAACAAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCGA
1 AAAGACAACAAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCTATAAATTATGGAGA
* * * *
92384918 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACGAGCCTTATCTCCCTGAAGTTGC
66 ATCTTATCTCCCTGAAGTTACAGTGAAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTAC
* * *
92384983 AGAGGAGCAGACTGAAGAAAGAAAATCTCATCTCCCTAAAGTAACAGTGGAGTAGATTGAAGTTG
131 AGAGGAGCAGACTGAAGAAAGAAAATCTCATCTCCCTAAAGTAACAATGAAGCAGATTGAAGTTG
* *
92385048 TAGATCTTATCTCCTTGAGGTTGAAGTGGAATAAATC
196 TAGATCTTATCTCCTTGAAGTTGAAGTGGAACAAATC
* * * * * * * *
92385085 GAAGACAGCGAATCTTATGTCCCTAAAGTTGCAGTGGAATAGATTGAAGCTATAA
1 AAAGACAACAAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCTATAA
92385140 GTCACAGATC
Statistics
Matches: 251, Mismatches: 33, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
231 3 0.01
232 247 0.98
233 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (232 bp):
AAAGACAACAAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCTATAAATTATGGAGA
ATCTTATCTCCCTGAAGTTACAGTGAAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTAC
AGAGGAGCAGACTGAAGAAAGAAAATCTCATCTCCCTAAAGTAACAATGAAGCAGATTGAAGTTG
TAGATCTTATCTCCTTGAAGTTGAAGTGGAACAAATC
Found at i:92386261 original size:50 final size:50
Alignment explanation
Indices: 92386198--92386297 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
92386188 AGAAACAAGA
*
92386198 TTGAATACAAAACAAAAAAGAGATCTAATATATAAAATATCCTAAAGGTG
1 TTGAATACAAAACAAAAAAAAGATCTAATATATAAAATATCCTAAAGGTG
*
92386248 TTGAATACGAAACAAAAAAAAGATCTAATATATAAAATATCCTAAAGGTG
1 TTGAATACAAAACAAAAAAAAGATCTAATATATAAAATATCCTAAAGGTG
92386298 ATTTTCGTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (50 bp):
TTGAATACAAAACAAAAAAAAGATCTAATATATAAAATATCCTAAAGGTG
Found at i:92386916 original size:19 final size:19
Alignment explanation
Indices: 92386892--92386929 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
92386882 CCATATAATT
92386892 TTGTTTTTAATTCATTTTA
1 TTGTTTTTAATTCATTTTA
92386911 TTGTTTTTAATTCATTTTA
1 TTGTTTTTAATTCATTTTA
92386930 GTCCTCTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.68
Consensus pattern (19 bp):
TTGTTTTTAATTCATTTTA
Found at i:92387374 original size:14 final size:13
Alignment explanation
Indices: 92387345--92387379 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
92387335 ATATTATATA
92387345 TATTTATTTTACT
1 TATTTATTTTACT
*
92387358 TATTTACTTTTATT
1 TATTTA-TTTTACT
92387372 TATTTATT
1 TATTTATT
92387380 CATTTATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (13 bp):
TATTTATTTTACT
Found at i:92389691 original size:46 final size:45
Alignment explanation
Indices: 92389602--92389822 Score: 196
Period size: 46 Copynumber: 4.7 Consensus size: 45
92389592 GGTAAGGTGT
* *
92389602 CGATGCCATGTCCCAGACATGGTCTTACAC-CGACTATTATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CT-TCATCTCG-AGGC
* *
92389650 CGATGCATGTCCTAGACATGTCTTACACTAGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT-CATCTCGAGGC
* * * *
92389696 TGATGCATGTCCCAGACATGTCTTATACTAGCATTCATCTTGATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-TTCATCTCGAGGC
* * * *
92389742 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCAT-CTCGAGGC
* *
92389790 TGATGCATGTCCCAGACACGTCTTACACTAGCT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT
92389823 CACAATCACC
Statistics
Matches: 144, Mismatches: 21, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 71 0.49
47 44 0.31
48 26 0.18
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTCATCTCGAGGC
Found at i:92396544 original size:15 final size:15
Alignment explanation
Indices: 92396524--92396556 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
92396514 TTACTTATAT
92396524 AACTTGCATAGCAGC
1 AACTTGCATAGCAGC
92396539 AACTTGCATAGCAGC
1 AACTTGCATAGCAGC
92396554 AAC
1 AAC
92396557 CAAAATCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.18
Consensus pattern (15 bp):
AACTTGCATAGCAGC
Found at i:92397288 original size:47 final size:48
Alignment explanation
Indices: 92397197--92397307 Score: 129
Period size: 47 Copynumber: 2.4 Consensus size: 48
92397187 GGGGTAAGGT
* * * *
92397197 GCCGATGCTAGGTCCCAGACATGGTCTCACATTAGCTCATATCTCA-A
1 GCCGATGCCATGTCCCAGACATGGTCTCACACTAGATCATATCTCATA
* * *
92397244 GCCGATGCCATGTCTCAGACATGGTCTTACACTA-ATTATCATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTCACACTAGATCAT-ATCTCATA
92397292 GCCGATG-CATGTCCCA
1 GCCGATGCCATGTCCCA
92397308 ATCATGTCTT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 3 0.06
47 43 0.80
48 8 0.15
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTCACACTAGATCATATCTCATA
Found at i:92397399 original size:47 final size:47
Alignment explanation
Indices: 92397337--92397465 Score: 142
Period size: 47 Copynumber: 2.7 Consensus size: 47
92397327 TACGTCTCGA
* *
92397337 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTTGTC-T-TGAT
1 GGCCAATGCATGTCCCAGACATGTCTTACACTAGCAC-TCTCATATG-T
*
92397384 -GCCAATGCCATGTCCCAAACATGGTCTTACACT-G-ACTCTCATAATGT
1 GGCCAATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCTCAT-ATGT
*
92397431 GGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GGCCAATGCATGTCCCAGACATGTCTTACACTAGC
92397466 TCACAATCAC
Statistics
Matches: 69, Mismatches: 5, Indels: 15
0.78 0.06 0.17
Matches are distributed among these distances:
45 3 0.04
46 19 0.28
47 29 0.42
48 18 0.26
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GGCCAATGCATGTCCCAGACATGTCTTACACTAGCACTCTCATATGT
Found at i:92400470 original size:28 final size:28
Alignment explanation
Indices: 92400401--92400501 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
92400391 GACAAGATTG
* * * *
92400401 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
92400431 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
92400459 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
92400488 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
92400502 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:92408424 original size:28 final size:28
Alignment explanation
Indices: 92408355--92408455 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
92408345 GACAAGATTG
* * * *
92408355 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
92408385 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
92408413 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
92408442 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
92408456 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:92412114 original size:39 final size:40
Alignment explanation
Indices: 92411965--92412145 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
92411955 TATTCGAATG
92411965 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
92412005 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
92412045 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
92412085 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
92412124 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
92412146 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
38 6 0.05
39 33 0.25
40 94 0.71
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:92419073 original size:24 final size:23
Alignment explanation
Indices: 92419029--92419073 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
92419019 TAGACAACCC
**
92419029 ATGTTAGAAATTTCGGTATTGAG
1 ATGTTAGAAATTTCGCCATTGAG
*
92419052 ATGTCTAGAACTTTCGCCATTG
1 ATGT-TAGAAATTTCGCCATTG
92419074 TAGCTATGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 4 0.22
24 14 0.78
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (23 bp):
ATGTTAGAAATTTCGCCATTGAG
Found at i:92426555 original size:40 final size:40
Alignment explanation
Indices: 92426511--92426620 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
92426501 TTCACAATTT
* *
92426511 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
92426551 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
92426591 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
92426621 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:92430109 original size:23 final size:22
Alignment explanation
Indices: 92430058--92430172 Score: 61
Period size: 23 Copynumber: 4.8 Consensus size: 22
92430048 AGCTGAAGGA
*
92430058 CAGTAAGCTCTATTGAGCTGAAAT
1 CAGTAAGCTCTA-CGAGCTG-AAT
*
92430082 -GGTAAGCTCTGACGAGCTGAAT
1 CAGTAAGCTCT-ACGAGCTGAAT
* * * *
92430104 CAGTAAACTCAAACGAGTTGAGAA
1 CAGTAAGCTC-TACGAGCTGA-AT
*
92430128 CAGTAAGCTCTTACGACCTGATATAT
1 CAGTAAGCTC-TACGAGCTG--A-AT
*
92430154 CGGTAAGCTCATACGAGCT
1 CAGTAAGCTC-TACGAGCT
92430173 ACAGTGAGTC
Statistics
Matches: 68, Mismatches: 17, Indels: 10
0.72 0.18 0.11
Matches are distributed among these distances:
22 3 0.04
23 30 0.44
24 17 0.25
26 18 0.26
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (22 bp):
CAGTAAGCTCTACGAGCTGAAT
Found at i:92430143 original size:24 final size:23
Alignment explanation
Indices: 92430047--92430148 Score: 78
Period size: 23 Copynumber: 4.3 Consensus size: 23
92430037 AGCTTCTCCT
**
92430047 GAGCTGAAGGACAGTAAGCTCTATT
1 GAGCTGAA--ACAGTAAGCTCTAAC
** *
92430072 GAGCTGAAATGGTAAGCTCTGAC
1 GAGCTGAAACAGTAAGCTCTAAC
* * *
92430095 GAGCTGAATCAGTAAACTCAAAC
1 GAGCTGAAACAGTAAGCTCTAAC
* *
92430118 GAGTTGAGAACAGTAAGCTCTTAC
1 GAGCTGA-AACAGTAAGCTCTAAC
*
92430142 GACCTGA
1 GAGCTGA
92430149 TATATCGGTA
Statistics
Matches: 58, Mismatches: 18, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
23 33 0.57
24 17 0.29
25 8 0.14
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTAAC
Found at i:92431775 original size:27 final size:26
Alignment explanation
Indices: 92431727--92431786 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
92431717 GCGAGGCTGC
*
92431727 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
92431754 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
92431780 CAGATAT
1 CAGATAT
92431787 ATATATATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:92431891 original size:27 final size:26
Alignment explanation
Indices: 92431844--92431894 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
92431834 CGAGGCTGCT
*
92431844 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
92431870 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
92431895 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:92435476 original size:20 final size:20
Alignment explanation
Indices: 92435451--92435491 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
92435441 GCTTCATGCA
* *
92435451 AAATCTTCTGAATGAGTTCT
1 AAATCTTCTAAATAAGTTCT
92435471 AAATCTTCTAAATAAGTTCT
1 AAATCTTCTAAATAAGTTCT
92435491 A
1 A
92435492 TTTCAAAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.39
Consensus pattern (20 bp):
AAATCTTCTAAATAAGTTCT
Found at i:92446531 original size:23 final size:24
Alignment explanation
Indices: 92446505--92446555 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
92446495 ATCTCTGATA
* *
92446505 AGCT-AAATCAGTAGGCTCATACG
1 AGCTAAAAACAGTAAGCTCATACG
92446528 AGCTAAAAACAGTAAGCTCATACG
1 AGCTAAAAACAGTAAGCTCATACG
92446552 AGCT
1 AGCT
92446556 GCGGTGAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (24 bp):
AGCTAAAAACAGTAAGCTCATACG
Found at i:92450557 original size:20 final size:20
Alignment explanation
Indices: 92450532--92450634 Score: 89
Period size: 20 Copynumber: 5.2 Consensus size: 20
92450522 AAGGGATTTT
*
92450532 CACTTTGGTGCCCCTGTTTG
1 CACTTCGGTGCCCCTGTTTG
* *
92450552 CACTTTGGTGCCCCTATTTG
1 CACTTCGGTGCCCCTGTTTG
* * * *
92450572 CACTTCAGTTCCCCTGTATA
1 CACTTCGGTGCCCCTGTTTG
* ** * *
92450592 CACTTCGATGTTCCTATTCG
1 CACTTCGGTGCCCCTGTTTG
*
92450612 CACTACGGTGCCCCTGTTTG
1 CACTTCGGTGCCCCTGTTTG
92450632 CAC
1 CAC
92450635 ATTTGTGCCC
Statistics
Matches: 61, Mismatches: 22, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.13, C:0.33, G:0.18, T:0.36
Consensus pattern (20 bp):
CACTTCGGTGCCCCTGTTTG
Found at i:92450587 original size:40 final size:40
Alignment explanation
Indices: 92450539--92450644 Score: 106
Period size: 40 Copynumber: 2.6 Consensus size: 40
92450529 TTTCACTTTG
* *
92450539 GTGCCCCTGTTTGCACTTTGGTGCCCCTATTTGCACTTCA
1 GTGCCCCTGTTTGCACTTTGGTGCCCCTATTCGCACTACA
* * * * * ** *
92450579 GTTCCCCTGTATACACTTCGATGTTCCTATTCGCACTACG
1 GTGCCCCTGTTTGCACTTTGGTGCCCCTATTCGCACTACA
92450619 GTGCCCCTGTTTGCACATTT-GTGCCC
1 GTGCCCCTGTTTGCAC-TTTGGTGCCC
92450645 TTGTCCACAC
Statistics
Matches: 48, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
40 46 0.96
41 2 0.04
ACGTcount: A:0.12, C:0.33, G:0.19, T:0.36
Consensus pattern (40 bp):
GTGCCCCTGTTTGCACTTTGGTGCCCCTATTCGCACTACA
Found at i:92453048 original size:14 final size:14
Alignment explanation
Indices: 92453029--92453055 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92453019 TAGGAATGTC
92453029 ATAAGAAAATTTTG
1 ATAAGAAAATTTTG
92453043 ATAAGAAAATTTT
1 ATAAGAAAATTTT
92453056 ATCGATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (14 bp):
ATAAGAAAATTTTG
Found at i:92454581 original size:341 final size:341
Alignment explanation
Indices: 92453988--92454675 Score: 1130
Period size: 341 Copynumber: 2.0 Consensus size: 341
92453978 TGATTGTTGA
92453988 TCATGATATATGTTTATGTGATTTATGGAATGTTATAAATACATGAAATGATTTCATGATTAGAA
1 TCATGATATATGTTTATGTGATTTATGGAATGTTATAAATACATGAAATGATTTCATGATTAGAA
92454053 ATGTGTTTAAAATGTTAAGTTCCGTTAGAATAATGAAAATCGATGGATACATGTGATTTCCCAAA
66 ATGTGTTTAAAATGTTAAGTTCCGTTAGAATAATGAAAATCGATGGATACATGTGATTTCCCAAA
* * * *
92454118 TATGAAGGTGATTCTGCATATGTTACAGAAGGGATGTAGCTCAGACGAATAATTTCGATATAGCC
131 TATGAAGGTGATTCTGCATATGTTACAGAAAGGATCTAGCTCAGACGAATAATCTCGATAGAGCC
* *
92454183 TCTCAAGTATCCTGTTATATTGTTCCTGCAAGCATCTTGATCGGTAGTGATTTAGCATGTGTTGC
196 TCTCAAGTATCCTGTTATATAGTTCCTGCAAGCATCCTGATCGGTAGTGATTTAGCATGTGTTGC
*
92454248 ACACTACCATAGCTTTTTGTGAGCGTCCTGACATACGATCGGTTGTGATCCTGCATATAATGCAG
261 ACACTACCATAGCTCTTTGTGAGCGTCCTGACATACGATCGGTTGTGATCCTGCATATAATGCAG
* *
92454313 ACATAAACGCAGCTCT
326 ACACAAACGCAACTCT
92454329 TCATGATATATGTTTATGTGATTTATGGAATGTTATAAATACATGAAATGATTTCATGATTAGAA
1 TCATGATATATGTTTATGTGATTTATGGAATGTTATAAATACATGAAATGATTTCATGATTAGAA
*
92454394 ATGTGTTTAAAATGTTAAGTTCCGTTGGAATAATGAAAATCGATGGATACATGTGATTTCCCAAA
66 ATGTGTTTAAAATGTTAAGTTCCGTTAGAATAATGAAAATCGATGGATACATGTGATTTCCCAAA
*
92454459 TATGAAGGTGATTCTGTATATGTTACAGAAAGGATCTAGCTC-GAAC-AAGTAATC-CTGATAGA
131 TATGAAGGTGATTCTGCATATGTTACAGAAAGGATCTAGCTCAG-ACGAA-TAATCTC-GATAGA
* * * *
92454521 GCCTCTCGAGTATCCTGTTATATAGTTCCTGCGAGCATCCTGGTCGGTAGTGGTTTAGCATGTGT
193 GCCTCTCAAGTATCCTGTTATATAGTTCCTGCAAGCATCCTGATCGGTAGTGATTTAGCATGTGT
* * ** * *
92454586 TGCACACTACCGTAGCTCTTTGTGAGCTTCCTGATGTATGATTGGTTGTGATCCTGCATATAATG
258 TGCACACTACCATAGCTCTTTGTGAGCGTCCTGACATACGATCGGTTGTGATCCTGCATATAATG
*
92454651 CGGACACAAACGCAACTCT
323 CAGACACAAACGCAACTCT
92454670 TCATGA
1 TCATGA
92454676 GCGTCTTATT
Statistics
Matches: 322, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
340 4 0.01
341 318 0.99
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (341 bp):
TCATGATATATGTTTATGTGATTTATGGAATGTTATAAATACATGAAATGATTTCATGATTAGAA
ATGTGTTTAAAATGTTAAGTTCCGTTAGAATAATGAAAATCGATGGATACATGTGATTTCCCAAA
TATGAAGGTGATTCTGCATATGTTACAGAAAGGATCTAGCTCAGACGAATAATCTCGATAGAGCC
TCTCAAGTATCCTGTTATATAGTTCCTGCAAGCATCCTGATCGGTAGTGATTTAGCATGTGTTGC
ACACTACCATAGCTCTTTGTGAGCGTCCTGACATACGATCGGTTGTGATCCTGCATATAATGCAG
ACACAAACGCAACTCT
Found at i:92456039 original size:8 final size:8
Alignment explanation
Indices: 92456028--92456057 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
92456018 TCCCAAAATA
92456028 CCGAAAAG
1 CCGAAAAG
92456036 CCGAAAAG
1 CCGAAAAG
*
92456044 CTGAAAAG
1 CCGAAAAG
92456052 CCGAAA
1 CCGAAA
92456058 GTTTGGCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
CCGAAAAG
Found at i:92456355 original size:28 final size:28
Alignment explanation
Indices: 92456269--92456371 Score: 152
Period size: 28 Copynumber: 3.7 Consensus size: 28
92456259 ATTGCATGAC
* *
92456269 TATGAATGTGATTAGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
92456297 TACGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
92456325 TATGAATGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
92456353 TATGAATGAGATCGGGCCT
1 TATGAATGTGATTGGGCCT
92456372 AAAGGGGCCA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:92456388 original size:29 final size:28
Alignment explanation
Indices: 92456291--92456388 Score: 88
Period size: 28 Copynumber: 3.5 Consensus size: 28
92456281 TAGGCCTGAC
* * * * * *
92456291 GGGCCATACGAAAGTGATTGGGCCTGAT
1 GGGCCATATGAATGAGATCGGGCCTAAG
* * * *
92456319 GGGCCATATGAATGTGATTGGGCCTGAT
1 GGGCCATATGAATGAGATCGGGCCTAAG
92456347 GGGCCATATGAATGAGATCGGGCCTAAAG
1 GGGCCATATGAATGAGATCGGGCCT-AAG
*
92456376 GGGCCAAATGAAT
1 GGGCCATATGAAT
92456389 AAGTACGGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 49 0.79
29 13 0.21
ACGTcount: A:0.28, C:0.16, G:0.35, T:0.21
Consensus pattern (28 bp):
GGGCCATATGAATGAGATCGGGCCTAAG
Found at i:92462697 original size:37 final size:37
Alignment explanation
Indices: 92462639--92462746 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
92462629 TAGCTCGAAT
* * *
92462639 AATCCCCACACGTAGTTATCGGGTCTTACCTGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
92462676 AATCTCCACACATAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
92462713 AATCTCCACACGTAGTCATCGGCTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
92462747 ATATATTTCC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:92462945 original size:48 final size:48
Alignment explanation
Indices: 92462887--92463176 Score: 454
Period size: 48 Copynumber: 6.0 Consensus size: 48
92462877 ATATACACAC
* *
92462887 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
92462935 ATCTCATACATATTTCACATTAGCCATTCGAATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
92462983 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
92463031 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACAACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
92463079 ATCTCGTACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
92463127 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
92463175 AT
1 AT
92463177 ATTTATCTTG
Statistics
Matches: 219, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 219 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:92465990 original size:46 final size:48
Alignment explanation
Indices: 92465902--92466073 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 48
92465892 CGCCCCTAAG
* ** *
92465902 TGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCATACATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCACTAGCATACATAAA
* * **
92465948 TGAACTCGGACTCAACTCAACAAGTTCGGATGC-CTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCACTAGCATACAT-AAA
* * * * * * *
92465995 CGAACTCAGACTCAACTCAACGAGTTCAGA--CATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCACTAGCATACATAAA
*
92466041 TGAATTCGGACTCAACTCAACGAGTTCGGATGC
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGC
92466074 TCAACCATCC
Statistics
Matches: 97, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
45 1 0.01
46 60 0.62
47 33 0.34
48 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (48 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCACTAGCATACATAAA
Found at i:92466013 original size:93 final size:93
Alignment explanation
Indices: 92465903--92466073 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
92465893 GCCCCTAAGT
* * * *
92465903 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATACATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATACATAAATGAACTCGGACTCAACTCAA
92465968 CAAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
92465996 GAACTCAGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAATTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATACATAAATGAACTCGGACTCAACTCAA
*
92466061 CGAGTTCGGATGC
66 CAAGTTCGGATGC
92466074 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATACATAAATGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92466524 original size:30 final size:30
Alignment explanation
Indices: 92466490--92466549 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
92466480 ATTTAATACG
92466490 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
92466520 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
92466550 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:92473217 original size:19 final size:20
Alignment explanation
Indices: 92473193--92473230 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
92473183 GGTACCACCA
92473193 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
92473212 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
92473231 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:92473526 original size:46 final size:46
Alignment explanation
Indices: 92473459--92473626 Score: 207
Period size: 46 Copynumber: 3.6 Consensus size: 46
92473449 CGCCCCTAAG
*
92473459 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATAAA
* * *
92473505 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCATAAA
* * * *
92473552 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATAAA
92473598 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
92473627 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 55 0.54
47 28 0.27
48 2 0.02
49 2 0.02
50 6 0.06
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATAAA
Found at i:92473568 original size:93 final size:93
Alignment explanation
Indices: 92473460--92473630 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
92473450 GCCCCTAAGT
* *
92473460 GAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
92473525 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
92473553 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
92473618 CGAGTTCGGATGC
66 CGAGTTCGGATGC
92473631 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92475233 original size:28 final size:28
Alignment explanation
Indices: 92475193--92475314 Score: 136
Period size: 28 Copynumber: 4.3 Consensus size: 28
92475183 GACTGGATGA
*
92475193 ATATGAATGTGATTGGGCCTGACGGGCC
1 ATATGAATGTGATTGGGCCTGATGGGCC
* * *
92475221 ATATGAAAGTGATTGGGCCTAATGGGCT
1 ATATGAATGTGATTGGGCCTGATGGGCC
* *
92475249 ATATGAATGTAATTGGGCCCGATGGGCC
1 ATATGAATGTGATTGGGCCTGATGGGCC
* * *
92475277 ATATGAATGCGATTTAGGCCTAATGGGGCC
1 ATATGAATGTGA-TTGGGCCTGAT-GGGCC
*
92475307 AAATGAAT
1 ATATGAAT
92475315 AAGTATGGAT
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 57 0.74
29 8 0.10
30 12 0.16
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTGATGGGCC
Found at i:92475254 original size:56 final size:57
Alignment explanation
Indices: 92475193--92475303 Score: 161
Period size: 56 Copynumber: 2.0 Consensus size: 57
92475183 GACTGGATGA
* * * *
92475193 ATATGAATGTGATTGGGCCTGACGGGCCATATGAAAGTGA-TTGGGCCTAATGGGCT
1 ATATGAATGTAATTGGGCCCGACGGGCCATATGAAAGCGATTTAGGCCTAATGGGCT
* *
92475249 ATATGAATGTAATTGGGCCCGATGGGCCATATGAATGCGATTTAGGCCTAATGGG
1 ATATGAATGTAATTGGGCCCGACGGGCCATATGAAAGCGATTTAGGCCTAATGGG
92475304 GCCAAATGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
56 35 0.73
57 13 0.27
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.27
Consensus pattern (57 bp):
ATATGAATGTAATTGGGCCCGACGGGCCATATGAAAGCGATTTAGGCCTAATGGGCT
Found at i:92479154 original size:15 final size:16
Alignment explanation
Indices: 92479134--92479163 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92479124 TGGTGCCATG
92479134 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
92479149 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
92479164 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:92484442 original size:42 final size:41
Alignment explanation
Indices: 92484393--92484546 Score: 191
Period size: 42 Copynumber: 3.7 Consensus size: 41
92484383 TGAGATAACA
*
92484393 TGTAAGACCATATCTGGGATATGGCATCGGTATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCG
* * *
92484435 TATAAGACCATATCTGGCATATGGCATCGATGTGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCG
* * *
92484477 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATT-CG
* *
92484520 TGTAAGGCCATATCTAGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
92484547 TGGTACGGTA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTCG
Found at i:92484746 original size:11 final size:11
Alignment explanation
Indices: 92484730--92484754 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
92484720 TCACTATGGG
92484730 GATGACCTTGT
1 GATGACCTTGT
92484741 GATGACCTTGT
1 GATGACCTTGT
92484752 GAT
1 GAT
92484755 TATTGGTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.16, G:0.28, T:0.36
Consensus pattern (11 bp):
GATGACCTTGT
Found at i:92492390 original size:9 final size:9
Alignment explanation
Indices: 92492378--92492434 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
92492368 TTTGATAAAC
92492378 ATGATATGT
1 ATGATATGT
*
92492387 ATGATATGCAC
1 ATGATATG--T
*
92492398 ATGACATGT
1 ATGATATGT
*
92492407 ATGATATGCAC
1 ATGATATG--T
92492418 ATGATATGT
1 ATGATATGT
92492427 ATGATATG
1 ATGATATG
92492435 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:92492401 original size:20 final size:20
Alignment explanation
Indices: 92492376--92492446 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
92492366 ATTTTGATAA
92492376 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
92492396 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
92492416 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
92492436 ACATGAGATGT
1 ACATGATATGT
92492447 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:92492423 original size:11 final size:11
Alignment explanation
Indices: 92492387--92492441 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
92492377 CATGATATGT
92492387 ATGATATGCAC
1 ATGATATGCAC
* *
92492398 ATGACATG--T
1 ATGATATGCAC
92492407 ATGATATGCAC
1 ATGATATGCAC
*
92492418 ATGATATG--T
1 ATGATATGCAC
92492427 ATGATATGCAC
1 ATGATATGCAC
92492438 ATGA
1 ATGA
92492442 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:92492523 original size:23 final size:23
Alignment explanation
Indices: 92492493--92492659 Score: 271
Period size: 23 Copynumber: 7.1 Consensus size: 23
92492483 AGGAAGTGCA
92492493 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
92492516 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
92492540 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
92492563 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
92492587 AAAGGGCTTATGCCCCGGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
92492610 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
92492633 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
92492657 AAA
1 AAA
92492660 AGAGGCTAGG
Statistics
Matches: 134, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
23 69 0.51
24 65 0.49
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:92492548 original size:24 final size:23
Alignment explanation
Indices: 92492492--92492681 Score: 265
Period size: 24 Copynumber: 8.0 Consensus size: 23
92492482 GAGGAAGTGC
92492492 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
92492515 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
92492538 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
92492562 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
92492585 CAAAAGGGCTTATGCCCCGGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
92492609 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
92492633 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
92492657 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
92492681 A
1 A
92492682 TGATAAAGCA
Statistics
Matches: 151, Mismatches: 11, Indels: 9
0.88 0.06 0.05
Matches are distributed among these distances:
23 64 0.42
24 77 0.51
25 10 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:92492560 original size:47 final size:47
Alignment explanation
Indices: 92492491--92492659 Score: 311
Period size: 47 Copynumber: 3.6 Consensus size: 47
92492481 GGAGGAAGTG
92492491 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
92492538 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
92492585 CAAAAGGGCTTATGCCCCGGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
92492632 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
92492660 AGAGGCTAGG
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:92497396 original size:30 final size:30
Alignment explanation
Indices: 92497351--92497410 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
92497341 ATTTAATATG
* *
92497351 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
* *
92497381 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
92497411 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:92502235 original size:27 final size:28
Alignment explanation
Indices: 92502205--92502274 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
92502195 ATAGTGAGTC
* *
92502205 CGCACACCTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
92502232 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
92502260 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92502275 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:92510175 original size:27 final size:27
Alignment explanation
Indices: 92510126--92510192 Score: 93
Period size: 26 Copynumber: 2.5 Consensus size: 27
92510116 ATAGTGAGTC
*
92510126 CGCACACTAGTGCTATATAATC-AACT
1 CGCACACTAGTGCTACATAATCAAACT
*
92510152 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACAC-TAGTGCTACATAATCAAACT
92510180 CGCACAC-AGTGCT
1 CGCACACTAGTGCT
92510193 GTAGGCACAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 13 0.35
27 13 0.35
28 11 0.30
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (27 bp):
CGCACACTAGTGCTACATAATCAAACT
Found at i:92521774 original size:3 final size:3
Alignment explanation
Indices: 92521762--92521835 Score: 51
Period size: 3 Copynumber: 24.3 Consensus size: 3
92521752 TTATTTTTGC
* * * *
92521762 TAT T-T TAT TAT TAA AAT TAAT TAAT TAC TAT TAT TAT TAG TAT TAT
1 TAT TAT TAT TAT TAT TAT T-AT T-AT TAT TAT TAT TAT TAT TAT TAT
* ** *
92521808 TAT TAT CAT TAT CGT TAT AAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
92521836 CTTAAAACTA
Statistics
Matches: 53, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
2 2 0.04
3 44 0.83
4 7 0.13
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:92521925 original size:21 final size:19
Alignment explanation
Indices: 92521889--92521937 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 19
92521879 TATTAGATTC
92521889 TATTATTTTATTTCTTTCTTTA
1 TATTA-TTT-TTTCTTT-TTTA
92521911 TATATATTTTTTCTTTTTTA
1 TAT-TATTTTTTCTTTTTTA
92521931 TATTATT
1 TATTATT
92521938 ATATTGTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 4 0.15
20 7 0.27
21 7 0.27
22 6 0.23
23 2 0.08
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.73
Consensus pattern (19 bp):
TATTATTTTTTCTTTTTTA
Found at i:92521942 original size:24 final size:23
Alignment explanation
Indices: 92521889--92521936 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 23
92521879 TATTAGATTC
92521889 TATTAT-TTTATTTCTTTCTTTA
1 TATTATATTTATTTCTTTCTTTA
92521911 TA-TATATTT-TTTCTTT-TTTA
1 TATTATATTTATTTCTTTCTTTA
92521931 TATTAT
1 TATTAT
92521937 TATATTGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 6 0.25
21 13 0.54
22 5 0.21
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (23 bp):
TATTATATTTATTTCTTTCTTTA
Found at i:92522329 original size:13 final size:13
Alignment explanation
Indices: 92522307--92522343 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
92522297 TTATTATTCC
92522307 TTTA-TTATTTTA
1 TTTATTTATTTTA
*
92522319 TTTATTTATTTCA
1 TTTATTTATTTTA
92522332 TTTATTTATTTT
1 TTTATTTATTTT
92522344 GTTTTTGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 4 0.18
13 18 0.82
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTATTTTA
Found at i:92525000 original size:93 final size:93
Alignment explanation
Indices: 92524888--92525058 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
92524878 GCCCATAAGT
* *
92524888 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92524953 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
92524981 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92525046 CGAGTTCGGATGC
66 CGAGTTCGGATGC
92525059 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92525074 original size:46 final size:46
Alignment explanation
Indices: 92524880--92525060 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
92524870 TGTAACCCGC
* * *
92524880 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
92524926 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
92524976 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
92525019 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
92525061 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:92527469 original size:29 final size:29
Alignment explanation
Indices: 92527430--92527517 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
92527420 CAAAGATAAC
*
92527430 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
92527459 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
92527488 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
92527518 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:92527488 original size:15 final size:15
Alignment explanation
Indices: 92527430--92527508 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
92527420 CAAAGATAAC
*
92527430 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
92527444 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
92527459 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
92527473 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
92527488 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
92527503 AAGAAA
1 AAGAAA
92527509 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:92527517 original size:15 final size:15
Alignment explanation
Indices: 92527441--92527517 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
92527431 AGAAAACCGA
92527441 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
92527456 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
92527470 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
92527484 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
92527500 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
92527515 ATA
1 ATA
92527518 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:92529960 original size:40 final size:40
Alignment explanation
Indices: 92529852--92529961 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
92529842 ATTGAATGAT
* * * * *
92529852 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
92529892 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
92529932 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
92529962 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:92529976 original size:40 final size:39
Alignment explanation
Indices: 92529852--92530001 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
92529842 ATTGAATGAT
* * * * * * *
92529852 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
92529892 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
92529932 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
92529972 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
92530002 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:92537672 original size:40 final size:40
Alignment explanation
Indices: 92537564--92537673 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
92537554 ATTGAATGAT
* * * * *
92537564 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
92537604 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
92537644 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
92537674 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:92537688 original size:40 final size:39
Alignment explanation
Indices: 92537564--92537713 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
92537554 ATTGAATGAT
* * * * * * *
92537564 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
92537604 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
92537644 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
92537684 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
92537714 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:92545093 original size:17 final size:17
Alignment explanation
Indices: 92545071--92545103 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
92545061 ACTTCCCTTC
92545071 TCATCTTTTCTTTTCTT
1 TCATCTTTTCTTTTCTT
92545088 TCATCTTTTCTTTTCT
1 TCATCTTTTCTTTTCT
92545104 CCATAGCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (17 bp):
TCATCTTTTCTTTTCTT
Found at i:92545762 original size:16 final size:16
Alignment explanation
Indices: 92545741--92545771 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92545731 ATCGGCAAAA
92545741 GTCGAAAAGCCGAAAT
1 GTCGAAAAGCCGAAAT
*
92545757 GTCGAAATGCCGAAA
1 GTCGAAAAGCCGAAA
92545772 GGTTGTTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.19, G:0.26, T:0.13
Consensus pattern (16 bp):
GTCGAAAAGCCGAAAT
Found at i:92546058 original size:27 final size:27
Alignment explanation
Indices: 92546028--92546085 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
92546018 TACTAAAATA
*
92546028 CCCTAAGTGTG-AAAATTACCATTATAC
1 CCCTAAG-GTGCAAAATGACCATTATAC
92546055 CCCT-AGGTGCAAAATGACCATTATAC
1 CCCTAAGGTGCAAAATGACCATTATAC
92546081 CCCTA
1 CCCTA
92546086 GGGTTGATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 3 0.11
26 21 0.75
27 4 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (27 bp):
CCCTAAGGTGCAAAATGACCATTATAC
Found at i:92546236 original size:28 final size:28
Alignment explanation
Indices: 92546190--92546243 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
92546180 GGAGGAAGCG
* * *
92546190 TTCTGGTGGCTCTGTCACAAATATCTAT
1 TTCTAGTGGCCCTGCCACAAATATCTAT
*
92546218 TTCTAGTGGCCCTGCCACAATTATCT
1 TTCTAGTGGCCCTGCCACAAATATCT
92546244 GTATCTGGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (28 bp):
TTCTAGTGGCCCTGCCACAAATATCTAT
Found at i:92552869 original size:39 final size:39
Alignment explanation
Indices: 92552815--92552977 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
92552805 TGTGTATGAA
92552815 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
92552854 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
92552893 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
92552932 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
92552972 TGTGCG
1 TGTGCG
92552978 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:92552993 original size:40 final size:39
Alignment explanation
Indices: 92552815--92553007 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
92552805 TGTGTATGAA
* *
92552815 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
92552854 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
92552893 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
92552932 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
92552972 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
92553008 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:92558998 original size:39 final size:39
Alignment explanation
Indices: 92558944--92559106 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
92558934 TGTGTATGAA
92558944 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
92558983 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
92559022 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
92559061 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
92559101 TGTGCG
1 TGTGCG
92559107 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:92559122 original size:40 final size:39
Alignment explanation
Indices: 92558944--92559136 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
92558934 TGTGTATGAA
* *
92558944 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
92558983 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
92559022 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
92559061 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
92559101 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
92559137 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:92562134 original size:15 final size:15
Alignment explanation
Indices: 92562114--92562147 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
92562104 GACATCTTAT
92562114 TTGTGGCTAAATTGG
1 TTGTGGCTAAATTGG
*
92562129 TTGTGGCTGAATTGG
1 TTGTGGCTAAATTGG
92562144 TTGT
1 TTGT
92562148 ATGTATATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.06, G:0.35, T:0.44
Consensus pattern (15 bp):
TTGTGGCTAAATTGG
Found at i:92569560 original size:48 final size:48
Alignment explanation
Indices: 92569489--92569715 Score: 332
Period size: 48 Copynumber: 5.0 Consensus size: 48
92569479 CAAGATAAAT
* * *
92569489 ATATGTATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
92569537 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----A---A----
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
*
92569574 ATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
*
92569622 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
92569670 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
92569716 TGTGACAGCC
Statistics
Matches: 162, Mismatches: 6, Indels: 22
0.85 0.03 0.12
Matches are distributed among these distances:
37 34 0.21
41 2 0.01
44 1 0.01
48 125 0.77
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
Found at i:92569579 original size:37 final size:37
Alignment explanation
Indices: 92569537--92569618 Score: 155
Period size: 37 Copynumber: 2.2 Consensus size: 37
92569527 TGTGTATGGG
92569537 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
92569574 ATATGTATATGTGGTAAATCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
92569611 ATATGTAT
1 ATATGTAT
92569619 GGGATATGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.33
Consensus pattern (37 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:92569586 original size:85 final size:85
Alignment explanation
Indices: 92569489--92569666 Score: 320
Period size: 85 Copynumber: 2.1 Consensus size: 85
92569479 CAAGATAAAT
* *
92569489 ATATGTATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGGGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGGGATATGTATATGTGGTAA
92569554 AGCCGAATGGCTAATGTGAA
66 AGCCGAATGGCTAATGTGAA
* *
92569574 ATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGGGATATGTATATGTGGTAA
92569639 AGCCGAATGGCTAATGTGAA
66 AGCCGAATGGCTAATGTGAA
92569659 ATATGTAT
1 ATATGTAT
92569667 GAGATATGTA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 89 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.31
Consensus pattern (85 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGGGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAA
Found at i:92571384 original size:164 final size:163
Alignment explanation
Indices: 92571102--92571461 Score: 639
Period size: 164 Copynumber: 2.2 Consensus size: 163
92571092 CGAATGATAC
* * * * *
92571102 CCGGGCTAAGTCCCGAAGGCGATTATGCTAATGATTATAATTGTGTTTGAGCCTTAGTAACGAAA
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGAAA
*
92571167 ATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGGGC
66 ATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGGC
92571232 TAAGCCCCGAAGACAATTATGCTGGAAATTATAA
131 TAAG-CCCGAAGACAATTATGCTGGAAATTATAA
*
92571266 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGAAA
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGAAA
92571331 ATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGGC
66 ATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGGC
*
92571396 TAAGCCCGAAGACAATTATGCTGGAAATTATAT
131 TAAGCCCGAAGACAATTATGCTGGAAATTATAA
92571429 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
92571462 GCTACATCCG
Statistics
Matches: 187, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
163 60 0.32
164 127 0.68
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (163 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGAAA
ATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGGC
TAAGCCCGAAGACAATTATGCTGGAAATTATAA
Found at i:92571550 original size:40 final size:40
Alignment explanation
Indices: 92571423--92571552 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
92571413 ATGCTGGAAA
* *
92571423 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
92571463 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
92571503 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
92571543 TTATATCCGG
1 TTATATCCGG
92571553 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:92573001 original size:48 final size:48
Alignment explanation
Indices: 92572930--92573180 Score: 412
Period size: 48 Copynumber: 5.2 Consensus size: 48
92572920 GGGTGTTACA
*
92572930 GTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
1 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
92572978 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
1 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
92573026 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT
1 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATAT
* *
92573076 ATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
* * * *
92573124 GTATGAGATACGTATACGTGGTAAAGCCGAAGGGCTAGTGTGAAATAT
1 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
*
92573172 GTAGGAGAT
1 GTATGAGAT
92573181 GTGTGTATAT
Statistics
Matches: 193, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
48 145 0.75
49 4 0.02
50 44 0.23
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
Found at i:92573124 original size:98 final size:98
Alignment explanation
Indices: 92572930--92573171 Score: 407
Period size: 98 Copynumber: 2.5 Consensus size: 98
92572920 GGGTGTTACA
* *
92572930 GTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTAT
1 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTAT
92572993 ATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
92573026 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTAT
1 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTAT
*
92573091 ATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
* * * *
92573124 GTATGAGATACGTATACGTGGTAAAGCCGAAGGGCTAGTGTGAAATAT
1 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
92573172 GTAGGAGATG
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
96 41 0.30
97 2 0.01
98 94 0.69
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (98 bp):
GTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTAT
ATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
Found at i:92573429 original size:37 final size:37
Alignment explanation
Indices: 92573321--92573429 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
92573311 GGAAATATAT
*
92573321 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
92573358 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
92573395 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
92573430 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:92574765 original size:40 final size:40
Alignment explanation
Indices: 92574707--92574955 Score: 381
Period size: 40 Copynumber: 6.2 Consensus size: 40
92574697 AGTTAGATAC
* *
92574707 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * * * *
92574747 CCGGGCTAGGTCCTGAAGAGCATTCGAGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* *
92574787 CCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* *
92574827 CCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
92574867 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
92574907 CCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
92574947 CCGGGCTAA
1 CCGGGCTAA
92574956 ACTTCGAAGG
Statistics
Matches: 192, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 192 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:92575075 original size:57 final size:57
Alignment explanation
Indices: 92574983--92575093 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 57
92574973 GCTGGAATCA
* *
92574983 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAAATCAGTAGT
* * * * *
92575040 TGAGGCACTATGTGTGCGAGTTCTTTAATCTAGCACTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAAATCAGT
92575094 CAGTGGGCAC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAAATCAGTAGT
Found at i:92575834 original size:2 final size:2
Alignment explanation
Indices: 92575816--92575854 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
92575806 AAGTTACATG
* *
92575816 TA TA AA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92575855 TCACAAGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:92578091 original size:20 final size:20
Alignment explanation
Indices: 92578068--92578109 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
92578058 CATAATGAGT
92578068 TGATTTAATAAGATATGATG
1 TGATTTAATAAGATATGATG
92578088 TGATTTAATAAGATATGATG
1 TGATTTAATAAGATATGATG
92578108 TG
1 TG
92578110 GCCATGATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40
Consensus pattern (20 bp):
TGATTTAATAAGATATGATG
Found at i:92578943 original size:48 final size:48
Alignment explanation
Indices: 92578826--92579397 Score: 979
Period size: 48 Copynumber: 11.9 Consensus size: 48
92578816 CAAGATAAAT
*
92578826 ATATGTATATGTGGT-AAGCCGAATGGCTAATTTGAAATATGTAT-GG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
*
92578872 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGCG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
*
92578920 ATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
92578968 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
*
92579016 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
92579064 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
92579112 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
*
92579160 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
92579208 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG-GG
* *
92579257 -TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGGG
* *
92579306 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
* * * *
92579354 ATACGTATACGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
92579398 GGAGATGTGT
Statistics
Matches: 504, Mismatches: 16, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 15 0.03
47 28 0.06
48 414 0.82
49 6 0.01
50 41 0.08
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
Found at i:92579652 original size:37 final size:37
Alignment explanation
Indices: 92579544--92579652 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
92579534 GGAAATATAT
*
92579544 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
92579581 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
92579618 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
92579653 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:92581825 original size:27 final size:27
Alignment explanation
Indices: 92581795--92582115 Score: 159
Period size: 27 Copynumber: 12.0 Consensus size: 27
92581785 GGTAAATCTA
* *
92581795 CAAACCAATGGTATTTCGGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *
92581822 CAAACCAATGGTATTTTC-ATAATTTTTG
1 CAAATCAAGGGTA-TTTCGGTAA-TTTTG
* * *
92581850 -AAAGTC-TGGGTATTTCTGTAATTTTA
1 CAAA-TCAAGGGTATTTCGGTAATTTTG
* * * * *
92581876 TAATTTAGGGGTATTTCTGTAATTTT-
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * * * * *
92581902 CTAAGTCAACGGTATTTTGATAACTTTC
1 C-AAATCAAGGGTATTTCGGTAATTTTG
* * *
92581930 CAAATTAAGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* ** **
92581957 CAAATCAAAGGTATTTTAGTAATTTCA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *
92581984 CAAATAAAGGGTATTTTGGTAA-TTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *
92582010 CAAACCAGGGGTATTTTGGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * **
92582037 CTAATCGAGGGTATTTTTGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * * *
92582064 TAAACCATGGGTA-TTCAGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * * *
92582090 TAAACCAATGGTATTTCAGTAATTTT
1 CAAATCAAGGGTATTTCGGTAATTTT
92582116 ACCCTACAGG
Statistics
Matches: 234, Mismatches: 50, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
26 53 0.23
27 170 0.73
28 11 0.05
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGGTAATTTTG
Found at i:92581970 original size:81 final size:79
Alignment explanation
Indices: 92581774--92582062 Score: 213
Period size: 81 Copynumber: 3.6 Consensus size: 79
92581764 TTCACCCTAC
* * * * * * * *
92581774 AAGGGTGTTTTGGTAAATCTACAAACCAATGGTATTTCGGTAATTTTGCAAACCAATGGTATTTT
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTT-CAAATCAACGGTATTTT
* ** *
92581839 CATAATTTTTGAAAGT
65 GATAA-TTTACAAACT
** * * * * *
92581855 CTGGGTATTTCT-GTAATTTTATAATTTAGGGGTATTTCTGTAATTTTCTAAGTCAACGGTATTT
1 AAGGGTATTT-TGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTC-AAATCAACGGTATTT
* *
92581919 TGATAACTTTCCAAATT
64 TGATAA-TTTACAAACT
* * * *
92581936 AAGGGTATTTTGGTAATTTTACAAATCAAAGGTATTT-TAGTAATTTCACAAATAAAGGGTATTT
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCT-GTAATTT-TCAAATCAACGGTATTT
* *
92582000 TGGTAATTTACAAACC
64 TGATAATTTACAAACT
* * * * *
92582016 AGGGGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTTGTAATTTT
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTT
92582063 GTAAACCATG
Statistics
Matches: 161, Mismatches: 41, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
80 49 0.30
81 110 0.68
82 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.42
Consensus pattern (79 bp):
AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTCAAATCAACGGTATTTTG
ATAATTTACAAACT
Found at i:92582033 original size:53 final size:52
Alignment explanation
Indices: 92581912--92582061 Score: 165
Period size: 53 Copynumber: 2.8 Consensus size: 52
92581902 CTAAGTCAAC
* * *
92581912 GGTATTTTGATAACTTTCCAAATTAAGGGTATTTTGGTAATTTTACAAATCAAA
1 GGTATTTTGGTAA-TTTCCAAATAAAGGGTATTTTGGTAA-TTTACAAACCAAA
* **
92581966 GGTATTTTAGTAATTTCACAAATAAAGGGTATTTTGGTAATTTACAAACCAGG
1 GGTATTTTGGTAATTTC-CAAATAAAGGGTATTTTGGTAATTTACAAACCAAA
* * ** *
92582019 GGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTTGTAATTT
1 GGTATTTTGGTAA-TTTCCAAATAAAGGGTATTTTGGTAATTT
92582062 TGTAAACCAT
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 47 0.57
54 35 0.43
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (52 bp):
GGTATTTTGGTAATTTCCAAATAAAGGGTATTTTGGTAATTTACAAACCAAA
Found at i:92582091 original size:26 final size:27
Alignment explanation
Indices: 92582046--92582115 Score: 99
Period size: 26 Copynumber: 2.6 Consensus size: 27
92582036 GCTAATCGAG
**
92582046 GGTATTTTTGTAATTTTGTAAACC-AT
1 GGTATTTCAGTAATTTTGTAAACCAAT
92582072 GGGTA-TTCAGTAATTTTGTAAACCAAT
1 -GGTATTTCAGTAATTTTGTAAACCAAT
92582099 GGTATTTCAGTAATTTT
1 GGTATTTCAGTAATTTT
92582116 ACCCTACAGG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 21 0.54
27 18 0.46
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.46
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAACCAAT
Found at i:92582132 original size:27 final size:27
Alignment explanation
Indices: 92582102--92582175 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
92582092 AACCAATGGT
* * *
92582102 ATTTCAGTAATTTTACCCTACAGGTGC
1 ATTTCAGTAATTCTACCCTAAAGGGGC
*
92582129 ATTTCAGTAATTCTACCCTAAAGGGGT
1 ATTTCAGTAATTCTACCCTAAAGGGGC
* * *
92582156 ATTTTAGTAATACTAGCCTA
1 ATTTCAGTAATTCTACCCTA
92582176 CAGATATGAG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTAAAGGGGC
Found at i:92582373 original size:17 final size:17
Alignment explanation
Indices: 92582351--92582383 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
92582341 GCTCGCATGC
*
92582351 TCGTGTGACTGCCATTG
1 TCGTGTGACTGACATTG
92582368 TCGTGTGACTGACATT
1 TCGTGTGACTGACATT
92582384 TCGACATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.21, G:0.27, T:0.36
Consensus pattern (17 bp):
TCGTGTGACTGACATTG
Found at i:92584838 original size:22 final size:22
Alignment explanation
Indices: 92584813--92584864 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
92584803 GGCTCAATTT
*
92584813 CGTAGACAGGACAACACATAGC
1 CGTAAACAGGACAACACATAGC
*
92584835 CGTAAACAGGACATCACATAGC
1 CGTAAACAGGACAACACATAGC
*
92584857 CATAAACA
1 CGTAAACA
92584865 TCGTAGCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.44, C:0.27, G:0.17, T:0.12
Consensus pattern (22 bp):
CGTAAACAGGACAACACATAGC
Found at i:92585325 original size:41 final size:40
Alignment explanation
Indices: 92585261--92585383 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 40
92585251 TAAAAGCCAC
*
92585261 CGGTGGATCCACGATCGTTAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACG-TCGTCAAGCAACCATGCGATCCTCAAT
92585302 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCAC-GTCGTCAAGCAACCATGCGATCCTCAAT
* * *
92585343 CAGTGGATCCACGGTCGTCAAGCAACCATTCGATCATCAAT
1 CGGTGGATCCAC-GTCGTCAAGCAACCATGCGATCCTCAAT
92585384 TTCTTCCTCC
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 75 0.99
42 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (40 bp):
CGGTGGATCCACGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:92585653 original size:27 final size:27
Alignment explanation
Indices: 92585601--92585907 Score: 221
Period size: 27 Copynumber: 11.4 Consensus size: 27
92585591 TTTCACCCTA
* * * *
92585601 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAC
*
92585628 CAAGGGTATTTTGATAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* * *
92585655 CAATGGTATTTTTGTAATTTTTG-AAAGT
1 CAAGGGTATTTTGGTAA-TTTTGCAAA-C
* ** *
92585683 CTAGGGTAATTTT-GTAATTTTATAAAT
1 CAAGGGT-ATTTTGGTAATTTTGCAAAC
* * * *
92585710 CAGGGGTATTTCT-ATAATTTTTCAAAT
1 CAAGGGTATTT-TGGTAATTTTGCAAAC
* * * * *
92585737 GAAAGGTATTTCGGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* *
92585764 CAGGGGTATTTTGGTAA-TTTACAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAC
*
92585790 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* * *
92585816 CTAGAGGTATTTTGGTAATTTTGCTAAT
1 CAAG-GGTATTTTGGTAATTTTGCAAAC
** *
92585844 TGAGGGTATTTTGGTAATTTTGAAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* ** *
92585871 TAAGGGTA-TTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAC
92585897 CAAGGGTATTT
1 CAAGGGTATTT
92585908 CAGTAATTCT
Statistics
Matches: 227, Mismatches: 43, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
26 52 0.23
27 151 0.67
28 19 0.08
29 5 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGCAAAC
Found at i:92585824 original size:80 final size:80
Alignment explanation
Indices: 92585604--92585880 Score: 253
Period size: 80 Copynumber: 3.4 Consensus size: 80
92585594 CACCCTACAA
* * * * * *
92585604 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTGATAATTTTGCAAACCAATGGTATTTTTG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACTAA-GGTATTTTGG
**
92585669 TAATTTTTGAAAGTCTA-
65 TAATTTTCCAAA-TC-AG
* * * *
92585686 GGGTAATTTT-GTAATTTTATAAATCAGGGGTATTTCT-ATAATTTTTCAAA-TGAAAGGTATTT
1 GGGT-ATTTTGGTAATTTTACAAACCAAGGGTATTT-TGATAATTTTACAAACT--AAGGTATTT
*
92585748 CGGTAATTTTCCAAATCAG
62 TGGTAATTTTCCAAATCAG
*
92585767 GGGTATTTTGGTAA-TTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACTA-AGGTATTTTGG
* * *
92585831 TAATTTTGCTAAT-TG
65 TAATTTTCCAAATCAG
*
92585846 AGGGTATTTTGGTAATTTTGA-AAACTAAGGGTATT
1 -GGGTATTTTGGTAATTTT-ACAAACCAAGGGTATT
92585881 CAGTAATTTT
Statistics
Matches: 161, Mismatches: 22, Indels: 25
0.77 0.11 0.12
Matches are distributed among these distances:
79 3 0.02
80 69 0.43
81 27 0.17
82 55 0.34
83 7 0.04
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACTAAGGTATTTTGGT
AATTTTCCAAATCAG
Found at i:92585914 original size:80 final size:80
Alignment explanation
Indices: 92585604--92585915 Score: 212
Period size: 80 Copynumber: 3.9 Consensus size: 80
92585594 CACCCTACAA
* * * * * *
92585604 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTT-TGATAATTTTGCAAACCAA-TGGTATTTT
1 GGGTATTTTGGT-AATTTACAAACCAAGGGTATTTCAG-TAATTTTACAAA-CAAGAGGTATTTC
* **
92585667 TGTAATTTTTGAAAGTCTA-
63 GGTAATTTTCCAAA-TC-AG
* * * * *
92585686 GGGTAATTTT-GTAATTTTATAAATCAGGGGTATTTCTA-TAATTTTTCAAATGAA-AGGTATTT
1 GGGT-ATTTTGGTAA-TTTACAAACCAAGGGTATTTC-AGTAATTTTACAAA-CAAGAGGTATTT
92585748 CGGTAATTTTCCAAATCAG
62 CGGTAATTTTCCAAATCAG
** * *
92585767 GGGTATTTTGGTAATTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGT
1 GGGTATTTTGGTAATTTACAAACCAAGGGTATTTCAGTAATTTTACAAACAAGAGGTATTTCGGT
* * *
92585832 AATTTTGCTAAT-TG
66 AATTTTCCAAATCAG
* **
92585846 AGGGTATTTTGGTAATTTTGA-AAACTAAGGGTA-TTCAGTAATTTTGTAAACCAAG-GGTATTT
1 -GGGTATTTTGGTAA-TTT-ACAAACCAAGGGTATTTCAGTAATTTTACAAA-CAAGAGGTATTT
*
92585908 CAGTAATT
62 CGGTAATT
92585916 CTACCCTATG
Statistics
Matches: 184, Mismatches: 34, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
79 2 0.01
80 95 0.52
81 29 0.16
82 54 0.29
83 4 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTACAAACCAAGGGTATTTCAGTAATTTTACAAACAAGAGGTATTTCGGT
AATTTTCCAAATCAG
Found at i:92585975 original size:27 final size:25
Alignment explanation
Indices: 92585900--92585975 Score: 98
Period size: 25 Copynumber: 3.0 Consensus size: 25
92585890 TGTAAACCAA
92585900 GGGTATTTCAGTAATTCTACCCTAT
1 GGGTATTTCAGTAATTCTACCCTAT
* *
92585925 GGGCATTTCAATAATTCTACCCTAT
1 GGGTATTTCAGTAATTCTACCCTAT
* *
92585950 AGGGGTATTTCAGTAATACTAGCCTA
1 --GGGTATTTCAGTAATTCTACCCTA
92585976 CAGATATGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
25 23 0.53
27 20 0.47
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (25 bp):
GGGTATTTCAGTAATTCTACCCTAT
Found at i:92586325 original size:70 final size:70
Alignment explanation
Indices: 92586212--92586351 Score: 244
Period size: 70 Copynumber: 2.0 Consensus size: 70
92586202 TCGGCATTTG
* * * *
92586212 CCGTTCTACAGATAGAGTAGTGCGAAAGACACACCTGTTTATGAGAAGGCGCCGAAGTCCACGAT
1 CCGTTCTACAGATAGAGTAGTACGAAACACACACCTGTTTATGAGAACGAGCCGAAGTCCACGAT
92586277 CACTA
66 CACTA
92586282 CCGTTCTACAGATAGAGTAGTACGAAACACACACCTGTTTATGAGAACGAGCCGAAGTCCACGAT
1 CCGTTCTACAGATAGAGTAGTACGAAACACACACCTGTTTATGAGAACGAGCCGAAGTCCACGAT
92586347 CACTA
66 CACTA
92586352 ACCTTGGTAC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (70 bp):
CCGTTCTACAGATAGAGTAGTACGAAACACACACCTGTTTATGAGAACGAGCCGAAGTCCACGAT
CACTA
Found at i:92587746 original size:23 final size:23
Alignment explanation
Indices: 92587716--92587764 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
92587706 ACTAAATGTG
92587716 TTAAAAGTTAATGTGATTTATGC
1 TTAAAAGTTAATGTGATTTATGC
*
92587739 TTAAAAGTTAATGTGCTTTATGC
1 TTAAAAGTTAATGTGATTTATGC
92587762 TTA
1 TTA
92587765 GTTACTAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.06, G:0.16, T:0.45
Consensus pattern (23 bp):
TTAAAAGTTAATGTGATTTATGC
Found at i:92589070 original size:43 final size:43
Alignment explanation
Indices: 92589023--92589141 Score: 143
Period size: 42 Copynumber: 2.8 Consensus size: 43
92589013 CCTCGATTGA
92589023 GATTTACGTATAAGACCATGTCTGGGACATCGGCATC-ATATCT
1 GATTTACGTATAAGACCATGTCTGGGACATCGGCATCGATAT-T
* * **
92589066 GATTT-CGTATAAGACCCTTTCTGGGACAGAGGCATCGATATT
1 GATTTACGTATAAGACCATGTCTGGGACATCGGCATCGATATT
* * * *
92589108 GAATTACATGTAAGACCATGTCTGGGACGTCGGC
1 GATTTACGTATAAGACCATGTCTGGGACATCGGC
92589142 GTTGTACTTG
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
42 32 0.52
43 30 0.48
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (43 bp):
GATTTACGTATAAGACCATGTCTGGGACATCGGCATCGATATT
Found at i:92593310 original size:17 final size:18
Alignment explanation
Indices: 92593268--92593316 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
92593258 AGTTGAAAAG
92593268 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
92593287 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
92593304 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
92593317 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:92594204 original size:40 final size:40
Alignment explanation
Indices: 92594138--92594304 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
92594128 AAATTGAATG
* * *
92594138 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
92594177 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
92594217 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
92594257 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
92594297 ATATCCGG
1 ATATCCGG
92594305 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:92601315 original size:17 final size:18
Alignment explanation
Indices: 92601273--92601321 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
92601263 AGTTGAAAAG
92601273 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
92601292 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
92601309 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
92601322 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:92602210 original size:40 final size:40
Alignment explanation
Indices: 92602144--92602310 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
92602134 AAATTGAATG
* * *
92602144 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
92602183 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
92602223 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
92602263 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
92602303 ATATCCGG
1 ATATCCGG
92602311 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:92609074 original size:12 final size:12
Alignment explanation
Indices: 92609052--92609086 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
92609042 GACCAAGCCA
92609052 CAGGCCCGTGTGC
1 CAGG-CCGTGTGC
92609065 CAGGCCGTGTGC
1 CAGGCCGTGTGC
*
92609077 TAGGCCGTGT
1 CAGGCCGTGT
92609087 ATGTAACACC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.09, C:0.31, G:0.40, T:0.20
Consensus pattern (12 bp):
CAGGCCGTGTGC
Found at i:92613034 original size:30 final size:29
Alignment explanation
Indices: 92612999--92613064 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
92612989 CCTTTCTGTA
*
92612999 ATTTGATAACTAAAGTTATCCCT-TTTCAT
1 ATTTGATAACAAAAGTTATCCCTATTT-AT
* *
92613028 AGTTTGACAGCAAAAGTTATCCCTATTTAT
1 A-TTTGATAACAAAAGTTATCCCTATTTAT
92613058 ATTTGAT
1 ATTTGAT
92613065 GGTCGTCACC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 6 0.19
30 22 0.71
31 3 0.10
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (29 bp):
ATTTGATAACAAAAGTTATCCCTATTTAT
Found at i:92613206 original size:30 final size:29
Alignment explanation
Indices: 92613046--92613206 Score: 141
Period size: 30 Copynumber: 5.4 Consensus size: 29
92613036 AGCAAAAGTT
92613046 ATCCCTATTT-ATATTTGATGGTCGTCACC
1 ATCCCT-TTTCATATTTGATGGTCGTCACC
92613075 AT-CCTTTTCATTATTTGATGGTCGTCACC
1 ATCCCTTTTCA-TATTTGATGGTCGTCACC
* * * *
92613104 ATCCCTTTTCAAAATTTGATAGTCG-AAGCT
1 ATCCCTTTTC-ATATTTGATGGTCGTCA-CC
* * * *
92613134 ATCCCTTTTCATGGTTCGATAGTCG-AAGCC
1 ATCCCTTTTCAT-ATTTGATGGTCGTCA-CC
* *
92613164 ATCCTTTTTCATAGTTTGATGGTTGTCACC
1 ATCCCTTTTCATA-TTTGATGGTCGTCACC
92613194 ATCCCTTTTCATA
1 ATCCCTTTTCATA
92613207 ATCGATAGCC
Statistics
Matches: 109, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
27 3 0.03
28 4 0.04
29 24 0.22
30 76 0.70
31 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (29 bp):
ATCCCTTTTCATATTTGATGGTCGTCACC
Found at i:92613230 original size:29 final size:29
Alignment explanation
Indices: 92613194--92613263 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
92613184 GGTTGTCACC
* *
92613194 ATCCCTTTTCATAATCGATAGCCAAAGTT
1 ATCCCTTTTCATAATCGATAACCAAAGCT
** * *
92613223 ATCCCTTTTTGTATTCGATAACCGAAGCT
1 ATCCCTTTTCATAATCGATAACCAAAGCT
92613252 ATCCCTTTTCAT
1 ATCCCTTTTCAT
92613264 TTGTCGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAACCAAAGCT
Found at i:92613273 original size:30 final size:29
Alignment explanation
Indices: 92613194--92613273 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
92613184 GGTTGTCACC
** * *
92613194 ATCCCTTTTCATAATCGATAGCCAAAGTT
1 ATCCCTTTTCATTTTCGATAACCAAAGCT
** * *
92613223 ATCCCTTTTTGTATTCGATAACCGAAGCT
1 ATCCCTTTTCATTTTCGATAACCAAAGCT
92613252 ATCCCTTTTCATTTGTCGATAA
1 ATCCCTTTTCATTT-TCGATAA
92613274 TCGACGTTAC
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
29 34 0.83
30 7 0.17
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTCATTTTCGATAACCAAAGCT
Found at i:92614630 original size:58 final size:57
Alignment explanation
Indices: 92614550--92614812 Score: 156
Period size: 58 Copynumber: 4.6 Consensus size: 57
92614540 AGAGGGAAGC
* * * * * *
92614550 CTTTCTGGTGAACCTCTAAAAAGAAAAGCCTTTGTGATAAACCTCTAAAAAGAAAATA
1 CTTTGTGGCGAACCTAT-AAAAGAAAAGCCTTTGTGAGAAACCTCTAAAAAAAAAAGA
* * * *
92614608 CTTTGTGGCGAACCTATGAAAAGAAAAGACTTTGTGGGGAACCTCTAAAAAAAAAAGC
1 CTTTGTGGCGAACCTAT-AAAAGAAAAGCCTTTGTGAGAAACCTCTAAAAAAAAAAGA
* * * * * * * *
92614666 CTTTGTGGCAAACCTCTATAAATGGAAAGCCTTTGTG-GAAAATCTTTACAAAAGAAAGC
1 CTTTGTGGCGAA-C-CTATAAAAGAAAAGCCTTTGTGAG-AAACCTCTAAAAAAAAAAGA
* * * * * * * * * **
92614725 CTATATGTCAAACCTCTTAAAGGAAAGCCTATGTG-GCGAACCTCT-AAAAGGAAAG-
1 CTTTGTGGCGAACCTATAAAAGAAAAGCCTTTGTGAG-AAACCTCTAAAAAAAAAAGA
* *
92614780 CTTTTTTGGCGAACCTATAAAAGGAAAGCCTTT
1 C-TTTGTGGCGAACCTATAAAAGAAAAGCCTTT
92614813 TTGGTGAACC
Statistics
Matches: 161, Mismatches: 40, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
55 1 0.01
56 32 0.20
57 24 0.15
58 60 0.37
59 40 0.25
60 4 0.02
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (57 bp):
CTTTGTGGCGAACCTATAAAAGAAAAGCCTTTGTGAGAAACCTCTAAAAAAAAAAGA
Found at i:92614803 original size:56 final size:56
Alignment explanation
Indices: 92614483--92614903 Score: 302
Period size: 56 Copynumber: 7.3 Consensus size: 56
92614473 AACATGCCAG
* * * * * * *
92614483 AAAAGAAAAGCCTTTATGGTGAACGTATGAAAGGAAAGCCCTTATGGCGAACCTATA
1 AAAAG-AAAGCCTTTGTGGCGAACCTATAAAAGGAAAGCCTTTGTGGCGAACCTCTA
* * * * * * * ***
92614540 AGAGGGAAGCCTTTCTGGTGAACCTCTAAAAAGAAAAGCCTTTGTGATAAACCTCTA
1 AAAAGAAAGCCTTTGTGGCGAACCTAT-AAAAGGAAAGCCTTTGTGGCGAACCTCTA
** * * *
92614597 AAAAGAAAATACTTTGTGGCGAACCTATGAAAAGAAAAGACTTTGTGGGGAACCTCTAA
1 AAAAG-AAAGCCTTTGTGGCGAACCTAT-AAAAGGAAAGCCTTTGTGGCGAACCTCT-A
* * * ** * *
92614656 AAAAAAAAGCCTTTGTGGCAAACCTCTATAAATGGAAAGCCTTTGTGGAAAATCTTTA
1 AAAAGAAAGCCTTTGTGGCGAA-C-CTATAAAAGGAAAGCCTTTGTGGCGAACCTCTA
* * * * * * *
92614714 CAAAAGAAAGCCTATATGTCAAACCTCTTAAAGGAAAGCCTATGTGGCGAACCTCTA
1 -AAAAGAAAGCCTTTGTGGCGAACCTATAAAAGGAAAGCCTTTGTGGCGAACCTCTA
* * * * * *
92614771 AAAGGAAAGCTTTTTTGGCGAACCTATAAAAGGAAAGCCTTTTTGGTGAACCTCTG
1 AAAAGAAAGCCTTTGTGGCGAACCTATAAAAGGAAAGCCTTTGTGGCGAACCTCTA
** * * * *
92614827 AAAAGAAAGCCTTTGTGGAAAATCTATACAAAGGAAAGCCTATATGGCTAACCTCTA
1 AAAAGAAAGCCTTTGTGGCGAACCTATA-AAAGGAAAGCCTTTGTGGCGAACCTCTA
* *
92614884 AAAATAAAAGCCTTGGTGGC
1 AAAA-GAAAGCCTTTGTGGC
92614904 AATTTTAAAA
Statistics
Matches: 280, Mismatches: 76, Indels: 15
0.75 0.20 0.04
Matches are distributed among these distances:
56 84 0.30
57 79 0.28
58 68 0.24
59 45 0.16
60 4 0.01
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (56 bp):
AAAAGAAAGCCTTTGTGGCGAACCTATAAAAGGAAAGCCTTTGTGGCGAACCTCTA
Found at i:92614864 original size:29 final size:28
Alignment explanation
Indices: 92614483--92614867 Score: 180
Period size: 28 Copynumber: 13.5 Consensus size: 28
92614473 AACATGCCAG
* * ** *
92614483 AAAAGAAAAGCCTTTATGGTGAACGTAT
1 AAAAGGAAAGCCTTTGTGGAAAACCTAT
* * * **
92614511 GAAAGGAAAGCCCTTATGGCGAACCTAT
1 AAAAGGAAAGCCTTTGTGGAAAACCTAT
* * * ** *
92614539 AAGAGGGAAGCCTTTCTGGTGAACCTCT
1 AAAAGGAAAGCCTTTGTGGAAAACCTAT
* *
92614567 AAAAAGAAAAGCCTTTGT-GATAAACCTCT
1 -AAAAGGAAAGCCTTTGTGGA-AAACCTAT
* ** **
92614596 AAAAAGAAAATACTTTGTGGCGAACCTAT
1 -AAAAGGAAAGCCTTTGTGGAAAACCTAT
* * ** *
92614625 GAAAAGAAAAGACTTTGTGGGGAACCTCT
1 -AAAAGGAAAGCCTTTGTGGAAAACCTAT
** *
92614654 AAAAAAAAAAGCCTTTGTGGCAAACCTCTAT
1 -AAAAGGAAAGCCTTTGTGG-AAAAC-CTAT
* * *
92614685 AAATGGAAAGCCTTTGTGGAAAATCTTT
1 AAAAGGAAAGCCTTTGTGGAAAACCTAT
* * * ** *
92614713 ACAAAAGAAAGCCTATATGTCAAACCTCT
1 A-AAAGGAAAGCCTTTGTGGAAAACCTAT
* * ** *
92614742 TAAAGGAAAGCCTATGTGGCGAACCTCT
1 AAAAGGAAAGCCTTTGTGGAAAACCTAT
* * **
92614770 AAAAGGAAAGCTTTTTTGGCGAACCTAT
1 AAAAGGAAAGCCTTTGTGGAAAACCTAT
* ** *
92614798 AAAAGGAAAGCCTTTTTGGTGAACCTCT
1 AAAAGGAAAGCCTTTGTGGAAAACCTAT
*
92614826 GAAAA-GAAAGCCTTTGTGGAAAATCTAT
1 -AAAAGGAAAGCCTTTGTGGAAAACCTAT
92614854 ACAAAGGAAAGCCT
1 A-AAAGGAAAGCCT
92614868 ATATGGCTAA
Statistics
Matches: 282, Mismatches: 66, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
27 1 0.00
28 141 0.50
29 118 0.42
30 19 0.07
31 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.24
Consensus pattern (28 bp):
AAAAGGAAAGCCTTTGTGGAAAACCTAT
Found at i:92615504 original size:13 final size:13
Alignment explanation
Indices: 92615486--92615511 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92615476 CATGAGAGTA
92615486 CTTTTAGGAAACC
1 CTTTTAGGAAACC
92615499 CTTTTAGGAAACC
1 CTTTTAGGAAACC
92615512 TTATCAAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
CTTTTAGGAAACC
Found at i:92621946 original size:28 final size:28
Alignment explanation
Indices: 92621904--92622005 Score: 107
Period size: 28 Copynumber: 3.6 Consensus size: 28
92621894 TAATTATATG
** *
92621904 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* * *
92621932 TGGCACTTAGTGTGCGATA-CATCCAGAA
1 TGGCACTTAGTGTGCGA-AGTATCGAGGA
* *
92621960 TGGCACTTACTGTGCGAAGTAACGAGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
*
92621988 TGACACTTAGTGTGCGAA
1 TGGCACTTAGTGTGCGAA
92622006 ACATCCAGAA
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
27 1 0.02
28 57 0.97
29 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAGTATCGAGGA
Found at i:92621995 original size:56 final size:56
Alignment explanation
Indices: 92621904--92622029 Score: 173
Period size: 56 Copynumber: 2.2 Consensus size: 56
92621894 TAATTATATG
* * * *
92621904 TGGCACTTAAC-GTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAA
1 TGGCACTT-ACTGTGCGAAGTAACGAGGATGACACTTAGTGTGCGAAACATCCAGAA
92621960 TGGCACTTACTGTGCGAAGTAACGAGGATGACACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTACTGTGCGAAGTAACGAGGATGACACTTAGTGTGCGAAACATCCAGAA
* * *
92622016 CGACACTTAGTGTG
1 TGGCACTTACTGTG
92622030 TAAGGTATCA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 2 0.03
56 60 0.97
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (56 bp):
TGGCACTTACTGTGCGAAGTAACGAGGATGACACTTAGTGTGCGAAACATCCAGAA
Done.