Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 297 of 433
Found at i:92622020 original size:28 final size:28
Alignment explanation
Indices: 92621935--92622029 Score: 109
Period size: 28 Copynumber: 3.4 Consensus size: 28
92621925 TCGGGGATGG
* *
92621935 CACTTAGTGTGCGATACATCCAGAATGG
1 CACTTAGTGTGCGAAACATCCAGAATGA
* ** * * *
92621963 CACTTACTGTGCGAAGTAACGAGGATGA
1 CACTTAGTGTGCGAAACATCCAGAATGA
*
92621991 CACTTAGTGTGCGAAACATCCAGAACGA
1 CACTTAGTGTGCGAAACATCCAGAATGA
92622019 CACTTAGTGTG
1 CACTTAGTGTG
92622030 TAAGGTATCA
Statistics
Matches: 52, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (28 bp):
CACTTAGTGTGCGAAACATCCAGAATGA
Found at i:92630738 original size:21 final size:22
Alignment explanation
Indices: 92630686--92630738 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
92630676 AAATAAAGTC
*
92630686 CATGTA-CAAATATCATCATCT
1 CATGTATCATATATCATCATCT
* *
92630707 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATCATCT
92630729 CATGTATCAT
1 CATGTATCAT
92630739 CATTTACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATCATCT
Found at i:92631103 original size:57 final size:55
Alignment explanation
Indices: 92630955--92631103 Score: 138
Period size: 57 Copynumber: 2.6 Consensus size: 55
92630945 ATGTATACAA
* * * *
92630955 TAGGATTACCAATCCAAGCTAAATCCTCTTCATGACATATGCTTTAAAGAGCTTGAT
1 TAGGATTACC-ATCCAGGCTAAATCCT-TTCATAACATATGCTTGAAAGAGATTGAT
* * * * * *
92631012 TTGGATTACCCGTCCGGGCTAAATCCAATTCATAACATATGCTTGAGAG-GATTTAT
1 TAGGATTA-CCATCCAGGCTAAATCC-TTTCATAACATATGCTTGAAAGAGATTGAT
92631068 ATCAGGATTACACATCCAGGCTAAATCCTTTCATAA
1 -T-AGGATTAC-CATCCAGGCTAAATCCTTTCATAA
92631104 ATGAGGTCAA
Statistics
Matches: 73, Mismatches: 14, Indels: 10
0.75 0.14 0.10
Matches are distributed among these distances:
56 5 0.07
57 46 0.63
58 22 0.30
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.31
Consensus pattern (55 bp):
TAGGATTACCATCCAGGCTAAATCCTTTCATAACATATGCTTGAAAGAGATTGAT
Found at i:92632735 original size:55 final size:56
Alignment explanation
Indices: 92632643--92632776 Score: 155
Period size: 55 Copynumber: 2.4 Consensus size: 56
92632633 AAGAAAACCC
* * ** * * *
92632643 TTTGTGGCTAACATCTGAAAAGAAAAGCCTTTGTAGCAAACTTTTGAAAGGAA-AGCC-
1 TTTGTGGCAAACCTCT-AAAA-AAAATTCTTTGTAGCAAACCTCTGAAA-AAATAGCCT
*
92632700 TTTGTGGCAAGCCTCTAAAAAAAATTCTTTGTAGCAAACCTCTGAAAAAATAGCCT
1 TTTGTGGCAAACCTCTAAAAAAAATTCTTTGTAGCAAACCTCTGAAAAAATAGCCT
92632756 TTTGTGGCAAACCTCTAAAAA
1 TTTGTGGCAAACCTCTAAAAA
92632777 GAAAAGCCTT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
54 2 0.03
55 27 0.41
56 24 0.36
57 13 0.20
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (56 bp):
TTTGTGGCAAACCTCTAAAAAAAATTCTTTGTAGCAAACCTCTGAAAAAATAGCCT
Found at i:92632736 original size:27 final size:27
Alignment explanation
Indices: 92632625--92633123 Score: 212
Period size: 29 Copynumber: 17.6 Consensus size: 27
92632615 ATTTGTGATG
* * *
92632625 AACCTCTAAAGAAAACCCTTTGTGGCT
1 AACCTCTAAAAAAAAGCCTTTGTGGCA
* *
92632652 AACATCTGAAAAGAAAAGCCTTTGTAGCA
1 AACCTCT-AAAA-AAAAGCCTTTGTGGCA
* * **
92632681 AACTTTTGAAAGGAAAGCCTTTGTGGCA
1 AACCTCT-AAAAAAAAGCCTTTGTGGCA
* ** *
92632709 AGCCTCTAAAAAAAATTCTTTGTAGCA
1 AACCTCTAAAAAAAAGCCTTTGTGGCA
*
92632736 AACCTCTGAAAAAATAGCCTTTTGTGGCA
1 AACCTCT-AAAAAAAAGCC-TTTGTGGCA
*
92632765 AACCTCTAAAAAGAAAAGCCTTTATGGCA
1 AACCTCT-AAAA-AAAAGCCTTTGTGGCA
* * *
92632794 AACCTCTACAAAACAAACCCTTTGTGCCT
1 AACCTCTA-AAAA-AAAGCCTTTGTGGCA
* * * **
92632823 AATCTCTACAAAGGAAAGCCTATGTGGTG
1 AACCTCTA-AAA-AAAAGCCTTTGTGGCA
* * *
92632852 AACCTCTAAAAGGAAAG-CTTATATGGCG
1 AACCTCTAAAA-AAAAGCCTT-TGTGGCA
* * * **
92632880 AACCTCTGAAAAGAAAGCCTATGTTGTG
1 AACCTCT-AAAAAAAAGCCTTTGTGGCA
** * **
92632908 AACCTCTGAAAGGAAAGCCTTTATGGTG
1 AACCTCT-AAAAAAAAGCCTTTGTGGCA
* * **
92632936 AACCTATGAAAAGAAAAGCCTTTATGGTG
1 AACCTCT-AAAA-AAAAGCCTTTGTGGCA
* *
92632965 AACCTCTAAACAGAAAAGCATTTGTTGCA
1 AACCTCTAAA-A-AAAAGCCTTTGTGGCA
* * *
92632994 AACCTCTAGAAAGGAAACCCTTTGTGGAA
1 AACCTCTA-AAA-AAAAGCCTTTGTGGCA
* * * *
92633023 AATCAT-TATAAAGGAAAGCCTATATGGCA
1 AA-CCTCTA-AAA-AAAAGCCTTTGTGGCA
** * * *
92633052 AACC-CTTGAAAGGAACGCCTATGTGGAA
1 AACCTC-T-AAAAAAAAGCCTTTGTGGCA
**
92633080 AACCTCTGAAAGGAAAGCCTTTGTGGCA
1 AACCTCT-AAAAAAAAGCCTTTGTGGCA
*
92633108 AACCTTTGAAAAAAAA
1 AACCTCT-AAAAAAAA
92633124 AGGCCTTGGA
Statistics
Matches: 373, Mismatches: 80, Indels: 37
0.76 0.16 0.08
Matches are distributed among these distances:
27 29 0.08
28 148 0.40
29 185 0.50
30 11 0.03
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (27 bp):
AACCTCTAAAAAAAAGCCTTTGTGGCA
Found at i:92632760 original size:84 final size:85
Alignment explanation
Indices: 92632625--92633130 Score: 237
Period size: 85 Copynumber: 5.9 Consensus size: 85
92632615 ATTTGTGATG
* * * * **
92632625 AACCTCTAAAGAAAACCCTTTGTGGCTAACATCTGAAAAGAAAAGCCTTTGTAGCAAA-CTTTTG
1 AACCTCTAAAAAAAACCCTTTGTAGCAAACATCTGAAAAGAAAAGCCTTTGTAGCAAACCTCTAA
* *
92632689 AAAGGAAAGCCTTTGTGGCA
66 AAAGAAAAGCCTTTATGGCA
* ** * * *
92632709 AGCCTCTAAAAAAAATTCTTTGTAGCAAACCTCTGAAAA-AATAGCCTTTTGTGGCAAACCTCTA
1 AACCTCTAAAAAAAACCCTTTGTAGCAAACATCTGAAAAGAAAAGCC-TTTGTAGCAAACCTCTA
92632773 AAAAGAAAAGCCTTTATGGCA
65 AAAAGAAAAGCCTTTATGGCA
* * * * **
92632794 AACCTCTACAAAACAAACCCTTTGT-GCCTAATC-TCT-ACAAAGGAAAGCCTATGTGGTGAACC
1 AACCTCTA-AAAA-AAACCCTTTGTAG-C-AAACATCTGA-AAAGAAAAGCCTTTGTAGCAAACC
* *
92632856 TCT-AAAAGGAAAG-CTTATATGGCG
61 TCTAAAAAGAAAAGCCTT-TATGGCA
* * * * ** * * * * ** * *
92632880 AACCTCTGAAAAGAAAGCCTATGTTGTGAACCTCTG-AAAGGAAAGCCTTTATGGTGAACCTATG
1 AACCTCT-AAAAAAAACCCTTTGTAGCAAACATCTGAAAAGAAAAGCCTTTGTAGCAAACCTCTA
**
92632944 AAAAGAAAAGCCTTTATGGTG
65 AAAAGAAAAGCCTTTATGGCA
* * * * * * * * *
92632965 AACCTCTAAACAGAAAAGCATTTGTTGCAAACCTCT-AGAAAGGAAACCCTTTGTGGAAAATCAT
1 AACCTCTAAA-A-AAAACCCTTTGTAGCAAACATCTGA-AAAGAAAAGCCTTTGTAGCAAA-CCT
* * *
92633029 -TATAAAGGAAAGCCTATATGGCA
62 CTAAAAAGAAAAGCCTTTATGGCA
* ** * * * * * * *
92633052 AACC-CTTGAAAGGAACGCCTATGTGGAAAACCTCTG-AAAGGAAAGCCTTTGTGGCAAACCTTT
1 AACCTC-TAAAAAAAAC-CCTTTGTAGCAAACATCTGAAAAGAAAAGCCTTTGTAGCAAACCTCT
92633115 GAAAAA-AAAAGGCCTT
64 -AAAAAGAAAA-GCCTT
92633131 GGAGGAAATT
Statistics
Matches: 330, Mismatches: 66, Indels: 50
0.74 0.15 0.11
Matches are distributed among these distances:
83 6 0.02
84 73 0.22
85 92 0.28
86 77 0.23
87 72 0.22
88 10 0.03
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.24
Consensus pattern (85 bp):
AACCTCTAAAAAAAACCCTTTGTAGCAAACATCTGAAAAGAAAAGCCTTTGTAGCAAACCTCTAA
AAAGAAAAGCCTTTATGGCA
Found at i:92632882 original size:28 final size:27
Alignment explanation
Indices: 92632826--92633010 Score: 142
Period size: 28 Copynumber: 6.5 Consensus size: 27
92632816 TGTGCCTAAT
* *
92632826 CTCTACAAAGGAAAGCCTATGTGGTGAAC
1 CTCTA-AAAGGAAAG-CTTTATGGTGAAC
*
92632855 CTCTAAAAGGAAAGCTTATATGGCGAAC
1 CTCTAAAAGGAAAGCTT-TATGGTGAAC
*
92632883 CTCTGAAAA-GAAAGC-CTATGTTGTGAAC
1 CTCT-AAAAGGAAAGCTTTATG--GTGAAC
*
92632911 CTCTGAAAGGAAAGCCTTTATGGTGAAC
1 CTCTAAAAGGAAAG-CTTTATGGTGAAC
* *
92632939 CTATGAAAAGAAAAGCCTTTATGGTGAAC
1 CTCT-AAAAGGAAAG-CTTTATGGTGAAC
* * *
92632968 CTCTAAACAGAAAAGCATT-TGTTGCAAAC
1 CTCTAAA-AGGAAAGCTTTATGGTG--AAC
92632997 CTCTAGAAAGGAAA
1 CTCTA-AAAGGAAA
92633011 CCCTTTGTGG
Statistics
Matches: 130, Mismatches: 14, Indels: 24
0.77 0.08 0.14
Matches are distributed among these distances:
26 4 0.03
27 9 0.07
28 56 0.43
29 55 0.42
30 6 0.05
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (27 bp):
CTCTAAAAGGAAAGCTTTATGGTGAAC
Found at i:92632901 original size:56 final size:55
Alignment explanation
Indices: 92632836--92633119 Score: 230
Period size: 56 Copynumber: 5.0 Consensus size: 55
92632826 CTCTACAAAG
*
92632836 GAAAGCCTATGTGGTGAACCTCTAAAAGGAAAGCTTATATGGCGAACCTCTGAAAA
1 GAAAGCCTATGTGGTGAACCTCTAAAAGGAAAGCTT-TATGGCAAACCTCTGAAAA
* * ** *
92632892 GAAAGCCTATGTTGTGAACCTCTGAAAGGAAAGCCTTTATGGTGAACCTATGAAAA
1 GAAAGCCTATGTGGTGAACCTCTAAAAGGAAAG-CTTTATGGCAAACCTCTGAAAA
* * * * * *
92632948 GAAAAGCCTTTATGGTGAACCTCTAAACAGAAAAGCATTTGTTGCAAACCTCTAGAAAG
1 G-AAAGCCTATGTGGTGAACCTCTAAA-AGGAAAGC-TTTATGGCAAACCTCT-GAAAA
* * ** * * *
92633007 GAAACCCTTTGTGGAAAATCAT-TATAAAGGAAAGCCTATATGGCAAACC-CTTGAAAG
1 GAAAGCCTATGTGGTGAA-CCTCTA-AAAGGAAAG-CTTTATGGCAAACCTC-TGAAAA
* ** * * *
92633064 GAACGCCTATGTGGAAAACCTCTGAAAGGAAAGCCTTTGTGGCAAACCTTTGAAAA
1 GAAAGCCTATGTGGTGAACCTCTAAAAGGAAAG-CTTTATGGCAAACCTCTGAAAA
92633120 AAAAAGGCCT
Statistics
Matches: 184, Mismatches: 33, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
56 78 0.42
57 47 0.26
58 49 0.27
59 10 0.05
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (55 bp):
GAAAGCCTATGTGGTGAACCTCTAAAAGGAAAGCTTTATGGCAAACCTCTGAAAA
Found at i:92633072 original size:28 final size:28
Alignment explanation
Indices: 92632832--92633118 Score: 118
Period size: 28 Copynumber: 10.1 Consensus size: 28
92632822 TAATCTCTAC
** *
92632832 AAAGGAAAGCCTATGTGGTGAA-CCTCTA
1 AAAGGAAAGCCTATGTGGCAAACCCT-TG
* * *
92632860 AAAGGAAAGCTTATATGGCGAA-CCTCTG
1 AAAGGAAAGCCTATGTGGCAAACCCT-TG
* * **
92632888 AAAAGAAAGCCTATGTTGTGAA-CCTCTG
1 AAAGGAAAGCCTATGTGGCAAACCCT-TG
* * **
92632916 AAAGGAAAGCCTTTATGGTGAA-CCTATG
1 AAAGGAAAGCCTATGTGGCAAACCCT-TG
* * * ** *
92632944 AAAAGAAAAGCCTTTATGGTGAA-CCTCTA
1 -AAAGGAAAGCCTATGTGGCAAACCCT-TG
* * * * *
92632973 AACAGAAAAGCATTTGTTGCAAACCTCTAG
1 AA-AGGAAAGCCTATGTGGCAAACC-CTTG
* * * * * *
92633003 AAAGGAAACCCTTTGTGGAAAATCATTAT
1 AAAGGAAAGCCTATGTGGCAAACCCTT-G
*
92633032 AAAGGAAAGCCTATATGGCAAACCCTTG
1 AAAGGAAAGCCTATGTGGCAAACCCTTG
* *
92633060 AAAGGAACGCCTATGTGG-AAAACCTCTG
1 AAAGGAAAGCCTATGTGGCAAACCCT-TG
* *
92633088 AAAGGAAAGCCTTTGTGGCAAACCTTTG
1 AAAGGAAAGCCTATGTGGCAAACCCTTG
92633116 AAA
1 AAA
92633119 AAAAAAGGCC
Statistics
Matches: 205, Mismatches: 47, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
27 6 0.03
28 112 0.55
29 82 0.40
30 3 0.01
31 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.23
Consensus pattern (28 bp):
AAAGGAAAGCCTATGTGGCAAACCCTTG
Found at i:92635220 original size:43 final size:43
Alignment explanation
Indices: 92635176--92635327 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
92635166 CTGAGATGTG
* * *
92635176 ATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTG
1 ATTACATGTAAGACCATATCTGGGACATTGGCATCGTATTGTA
* ** * * *
92635219 ATTACGTGTAAGACCATGCCTGGGACATTGGCCTCGTTAAT-CA
1 ATTACATGTAAGACCATATCTGGGACATTGGCATCG-TATTGTA
* * * *
92635262 ATTTCATGTAAGACCCTATCTTGGACAATGGCATCG-ATATGTA
1 ATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT-TGTA
*
92635305 ATAACATGTAAGACCATATCTGG
1 ATTACATGTAAGACCATATCTGG
92635328 AATATGGCAT
Statistics
Matches: 85, Mismatches: 21, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 80 0.94
44 3 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (43 bp):
ATTACATGTAAGACCATATCTGGGACATTGGCATCGTATTGTA
Found at i:92639645 original size:57 final size:57
Alignment explanation
Indices: 92639576--92640027 Score: 304
Period size: 57 Copynumber: 7.9 Consensus size: 57
92639566 GCCTTTACAA
* * **
92639576 TGAAACTCTAAAAGGGAAGCCTCAGTGGCAAACCTCTAAAAAGAAAAGCCTTTGTGG
1 TGAACCTCTAAAAGGAAAGCCTTTGTGGCAAACCTCTAAAAAGAAAAGCCTTTGTGG
* * * * * ** * *
92639633 TGAACCTATAAAAAGAAAAGTCTTTGTGGCGAACCTCTGAAGGGAAAATCCTTTGTTG
1 TGAACCTCT-AAAAGGAAAGCCTTTGTGGCAAACCTCTAAAAAGAAAAGCCTTTGTGG
** * * * * *
92639691 AAAACCTCTACAAAGGAAAGCCTTTGTTGTAAATCTCTACAAAGGAAAA-CCTTTCTGG
1 TGAACCTCTA-AAAGGAAAGCCTTTGTGGCAAACCTCTA-AAAAGAAAAGCCTTTGTGG
* * * * * * * *
92639749 TGAATCTTTGAAAGGAAAGCCTTTGTGGTAAGCCTTTAAAAGGAAAGGCCTTTGTGG
1 TGAACCTCTAAAAGGAAAGCCTTTGTGGCAAACCTCTAAAAAGAAAAGCCTTTGTGG
* * * * * **
92639806 TGAACCTCTGAAAAGAAAAGCCTTTATGGCAAACCTCT-GAAAGGAAAGCCTATGTTC
1 TGAACCTCT-AAAAGGAAAGCCTTTGTGGCAAACCTCTAAAAAGAAAAGCCTTTGTGG
** * **
92639863 CAAACC-CATGAAAGGAAAGCCTTTGTGGTGAACCTCTAAAAAGAAAAGCCTTTGTGG
1 TGAACCTC-TAAAAGGAAAGCCTTTGTGGCAAACCTCTAAAAAGAAAAGCCTTTGTGG
* * * * * * * * **
92639920 CGAACCTCTAAAA-AAAATCCTTTATAGTAAATCTTTACAAAAG-AAAGCCAGTGTGG
1 TGAACCTCTAAAAGGAAAGCCTTTGTGGCAAACCTCTA-AAAAGAAAAGCCTTTGTGG
* * * * *
92639976 -CAAGCCTCTAAAAGGAAAGCCTATGTGGCGAACCACTAAAAAGAAAAACCTT
1 TGAA-CCTCTAAAAGGAAAGCCTTTGTGGCAAACCTCTAAAAAGAAAAGCCTT
92640028 GGAGGCAATT
Statistics
Matches: 294, Mismatches: 89, Indels: 24
0.72 0.22 0.06
Matches are distributed among these distances:
55 2 0.01
56 74 0.25
57 111 0.38
58 99 0.34
59 8 0.03
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (57 bp):
TGAACCTCTAAAAGGAAAGCCTTTGTGGCAAACCTCTAAAAAGAAAAGCCTTTGTGG
Found at i:92639866 original size:28 final size:28
Alignment explanation
Indices: 92639808--92639884 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
92639798 CTTTGTGGTG
* * *
92639808 AACCTCTGAAAAGAAAAGCCTTTATGGCA
1 AACCTCTG-AAAGGAAAGCCTATATGCCA
* *
92639837 AACCTCTGAAAGGAAAGCCTATGTTCCA
1 AACCTCTGAAAGGAAAGCCTATATGCCA
92639865 AACC-CATGAAAGGAAAGCCT
1 AACCTC-TGAAAGGAAAGCCT
92639885 TTGTGGTGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.02
28 33 0.79
29 8 0.19
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.18
Consensus pattern (28 bp):
AACCTCTGAAAGGAAAGCCTATATGCCA
Found at i:92639941 original size:27 final size:29
Alignment explanation
Indices: 92639600--92640027 Score: 248
Period size: 29 Copynumber: 15.0 Consensus size: 29
92639590 GGAAGCCTCA
*
92639600 GTGGCAAACCTCTAAAAAGAAAAGCCTTT
1 GTGGCGAACCTCTAAAAAGAAAAGCCTTT
* * *
92639629 GTGGTGAACCTATAAAAAGAAAAGTCTTT
1 GTGGCGAACCTCTAAAAAGAAAAGCCTTT
* ** *
92639658 GTGGCGAACCTCTGAAGGGAAAATCCTTT
1 GTGGCGAACCTCTAAAAAGAAAAGCCTTT
* ** * *
92639687 GTTGAAAACCTCTACAAAGGAAAGCCTTT
1 GTGGCGAACCTCTAAAAAGAAAAGCCTTT
* ** * *
92639716 GTTGTAAATCTCTACAAAGGAAAA-CCTTT
1 GTGGCGAACCTCTA-AAAAGAAAAGCCTTT
* * * ** *
92639745 CTGGTGAATCT-TTGAAAGGAAAGCCTTT
1 GTGGCGAACCTCTAAAAAGAAAAGCCTTT
* * * *
92639773 GTGG-TAAGCCTTTAAAAGGAAAGGCCTTT
1 GTGGCGAA-CCTCTAAAAAGAAAAGCCTTT
* *
92639802 GTGGTGAACCTCTGAAAAGAAAAGCCTTT
1 GTGGCGAACCTCTAAAAAGAAAAGCCTTT
* * * * *
92639831 ATGGCAAACCTCT-GAAAGGAAAGCCTAT
1 GTGGCGAACCTCTAAAAAGAAAAGCCTTT
** * * *
92639859 GTTCCAAACC-C-ATGAAAGGAAAGCCTTT
1 GTGGCGAACCTCTA-AAAAGAAAAGCCTTT
*
92639887 GTGGTGAACCTCTAAAAAGAAAAGCCTTT
1 GTGGCGAACCTCTAAAAAGAAAAGCCTTT
*
92639916 GTGGCGAACCTCT-AAAA-AAAATCCTTT
1 GTGGCGAACCTCTAAAAAGAAAAGCCTTT
* * ** * * **
92639943 ATAGTAAATCTTTACAAAAG-AAAGCCAGT
1 GTGGCGAACCTCTA-AAAAGAAAAGCCTTT
* *
92639972 GTGGC-AAGCCTCT-AAAAGGAAAGCCTAT
1 GTGGCGAA-CCTCTAAAAAGAAAAGCCTTT
* *
92640000 GTGGCGAACCACTAAAAAGAAAAACCTT
1 GTGGCGAACCTCTAAAAAGAAAAGCCTT
92640028 GGAGGCAATT
Statistics
Matches: 300, Mismatches: 83, Indels: 32
0.72 0.20 0.08
Matches are distributed among these distances:
27 30 0.10
28 72 0.24
29 189 0.63
30 9 0.03
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.24
Consensus pattern (29 bp):
GTGGCGAACCTCTAAAAAGAAAAGCCTTT
Found at i:92644786 original size:16 final size:16
Alignment explanation
Indices: 92644765--92644798 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
92644755 TCTTCATCAA
92644765 ACTATTACTGCTTCAT
1 ACTATTACTGCTTCAT
92644781 ACTATTACTGCTTCAT
1 ACTATTACTGCTTCAT
92644797 AC
1 AC
92644799 ATCTACCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.41
Consensus pattern (16 bp):
ACTATTACTGCTTCAT
Found at i:92646192 original size:43 final size:43
Alignment explanation
Indices: 92646144--92646303 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
92646134 TGTGATTGCA
92646144 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTACG
* * * *
92646187 TGTAAGACCATGTTTGGGACATTGGCATATTTAAT-CGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCAT-TGTATTGAGATTACG
* * * * ** * * *
92646230 TGTAAGACCCTGTCTAGGAAAGTGGCACCG-ATATGTGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGAGATTACG
* *
92646273 TGTAAGACCATATCTGGGATA-TGGCATTGTA
1 TGTAAGACCATGTCTGGGACATTGGCATTGTA
92646304 CTAGCTATAT
Statistics
Matches: 91, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
41 1 0.01
42 7 0.08
43 79 0.87
44 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTACG
Found at i:92647449 original size:87 final size:87
Alignment explanation
Indices: 92647321--92647486 Score: 269
Period size: 87 Copynumber: 1.9 Consensus size: 87
92647311 GCTGCACGGC
* * *
92647321 CGTGTGTCCCTTGGGGAACCCTTTTGAATTAAGTCAATATACCCTACATTTTTGACATGGCTTAG
1 CGTGTGTCCCTTGGGGAACCCTTTCGAATTAAGTCAATATACCCTACAGTTCTGACATGGCTTAG
92647386 ACACACGGGCATGTGTCTCAGT
66 ACACACGGGCATGTGTCTCAGT
* * * *
92647408 CGTGTGTCCTTTGGGGTACCCTTTCGAATTAAGTCAGTATACCCTATAGTTCTGACATGGCTTAG
1 CGTGTGTCCCTTGGGGAACCCTTTCGAATTAAGTCAATATACCCTACAGTTCTGACATGGCTTAG
92647473 ACACACGGGCATGT
66 ACACACGGGCATGT
92647487 CTACTGGCCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (87 bp):
CGTGTGTCCCTTGGGGAACCCTTTCGAATTAAGTCAATATACCCTACAGTTCTGACATGGCTTAG
ACACACGGGCATGTGTCTCAGT
Found at i:92647499 original size:87 final size:87
Alignment explanation
Indices: 92647299--92647499 Score: 262
Period size: 87 Copynumber: 2.3 Consensus size: 87
92647289 GCCGTCTGTA
* * *
92647299 ACACACGGTCATG-CTGCACGGCCGTGTGTCCCTTGGGGAACCCTTTTGAATTAAGTCAATATAC
1 ACACACGGGCATGTCT-CTCGGCCGTGTGTCCCTTGGGGAACCCTTTCGAATTAAGTCAATATAC
* *
92647363 CCTACATTTTTGACATGGCTTAG
65 CCTACAGTTCTGACATGGCTTAG
* * * * * *
92647386 ACACACGGGCATGTGTCTCAGTCGTGTGTCCTTTGGGGTACCCTTTCGAATTAAGTCAGTATACC
1 ACACACGGGCATGTCTCTCGGCCGTGTGTCCCTTGGGGAACCCTTTCGAATTAAGTCAATATACC
*
92647451 CTATAGTTCTGACATGGCTTAG
66 CTACAGTTCTGACATGGCTTAG
92647473 ACACACGGGCATGTCTACT-GGCCGTGT
1 ACACACGGGCATGTCT-CTCGGCCGTGT
92647500 ATGGCATACG
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
87 94 0.97
88 3 0.03
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (87 bp):
ACACACGGGCATGTCTCTCGGCCGTGTGTCCCTTGGGGAACCCTTTCGAATTAAGTCAATATACC
CTACAGTTCTGACATGGCTTAG
Found at i:92652729 original size:29 final size:29
Alignment explanation
Indices: 92652664--92652781 Score: 118
Period size: 29 Copynumber: 4.2 Consensus size: 29
92652654 TACATACATG
* *
92652664 CATAT-GCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * * *
92652691 GAAATGGCCCATTTGGCCCAGTTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* *
92652720 CTTATGGCCCACTAGGCCCAATTC-TCATT
1 CATATGGCCCATTAGGCCCAATTCAT-ATT
*
92652749 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
92652778 -ATAT
1 CATAT
92652782 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
27 3 0.04
28 17 0.24
29 51 0.71
30 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:92652768 original size:58 final size:57
Alignment explanation
Indices: 92652669--92652777 Score: 155
Period size: 58 Copynumber: 1.9 Consensus size: 57
92652659 ACATGCATAT
* * * **
92652669 GCCCACTAGGCCCAATCTTATTGAAATGGCCCATTTGGCCCAGTTCATATTCTTATG
1 GCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCTTATG
*
92652726 GCCCACTAGGCCCAATTCTCATTCATATGGCCCATTAGGCCCAAATCATATT
1 GCCCACTAGGCCCAA-TCTCATTCAAATGGCCCATTAGGCCCAAATCATATT
92652778 ATATTCATGC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 15 0.33
58 30 0.67
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (57 bp):
GCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCTTATG
Found at i:92657525 original size:16 final size:16
Alignment explanation
Indices: 92657504--92657543 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
92657494 TAACTTTTGA
92657504 CTTTTCAATATTTCAG
1 CTTTTCAATATTTCAG
* *
92657520 CTTTTCGATTTTTCAG
1 CTTTTCAATATTTCAG
*
92657536 CGTTTCAA
1 CTTTTCAA
92657544 CTTTTGCTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (16 bp):
CTTTTCAATATTTCAG
Found at i:92660610 original size:27 final size:26
Alignment explanation
Indices: 92660580--92660666 Score: 102
Period size: 27 Copynumber: 3.3 Consensus size: 26
92660570 TGGAGGAAGC
* *
92660580 GTTCGGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
92660607 GTTCTGGTGGCTCTGCCATAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
92660633 ATATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
92660660 GTTCTGG
1 GTTCTGG
92660667 CAGACATGCT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 13 0.25
27 38 0.75
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:92668247 original size:27 final size:26
Alignment explanation
Indices: 92668209--92668294 Score: 84
Period size: 26 Copynumber: 3.3 Consensus size: 26
92668199 TGGAGGAAGC
*
92668209 GTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
92668236 GTTCTGGTGGCTCTACCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
92668262 GTATC-GGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
*
92668288 ATTCTGG
1 GTTCTGG
92668295 CAACCGTGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
25 2 0.04
26 29 0.59
27 18 0.37
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:92668270 original size:26 final size:27
Alignment explanation
Indices: 92668209--92668263 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
92668199 TGGAGGAAGC
* *
92668209 GTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATACCACAAATATCT
*
92668236 GTTCTGGTGGCTCTACCAC-AATATCT
1 GTTCTGGTGGCTATACCACAAATATCT
92668262 GT
1 GT
92668264 ATCGGTGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTATACCACAAATATCT
Found at i:92668979 original size:49 final size:49
Alignment explanation
Indices: 92668918--92669014 Score: 176
Period size: 49 Copynumber: 2.0 Consensus size: 49
92668908 AATCACCCTG
*
92668918 ATTACCAAAAACAAAGAACACAACCAACCGTAAGTCAATTTGACGCGTT
1 ATTACCAAAAACAAAGAACACAACCAACCGTAAGTCAATGTGACGCGTT
*
92668967 ATTACCATAAACAAAGAACACAACCAACCGTAAGTCAATGTGACGCGT
1 ATTACCAAAAACAAAGAACACAACCAACCGTAAGTCAATGTGACGCGT
92669015 CAGACTTGGC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.44, C:0.25, G:0.13, T:0.18
Consensus pattern (49 bp):
ATTACCAAAAACAAAGAACACAACCAACCGTAAGTCAATGTGACGCGTT
Found at i:92670341 original size:2 final size:2
Alignment explanation
Indices: 92670334--92670362 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
92670324 GAGACTAGTC
92670334 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92670363 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92680081 original size:39 final size:40
Alignment explanation
Indices: 92679967--92680149 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
92679957 GCTACTCGTT
*
92679967 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATT-TAGTAACTCGCA
*
92680007 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* *
92680047 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* * * * *
92680086 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATTTAGTAAC-TCGCA
*
92680127 CAAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
92680150 GAATATCATT
Statistics
Matches: 124, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 63 0.51
41 23 0.19
42 3 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
Found at i:92688265 original size:39 final size:40
Alignment explanation
Indices: 92688151--92688333 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
92688141 GCTACTCGTT
* *
92688151 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATT-TAGTAACTCGCA
*
92688191 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* *
92688231 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* * * * *
92688270 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATTTAGTAAC-TCGCA
* *
92688311 CAAAAGCCTTCGGGACTTTGCCC
1 CAAATGCCTTCGGGACTTAGCCC
92688334 GGATATCATT
Statistics
Matches: 122, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 61 0.50
41 23 0.19
42 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
Found at i:92689054 original size:2 final size:2
Alignment explanation
Indices: 92689047--92689076 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
92689037 TCATGTGCAA
92689047 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92689077 GCAAGAGCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92705202 original size:34 final size:34
Alignment explanation
Indices: 92705159--92705225 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
92705149 GTAATGTTGA
92705159 TTTAGTAATGTGCAAATGTTTGAACTATATTATC
1 TTTAGTAATGTGCAAATGTTTGAACTATATTATC
92705193 TTTAGTAATGTGCAAATGTTTGAACTATATTAT
1 TTTAGTAATGTGCAAATGTTTGAACTATATTAT
92705226 TTGATGAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (34 bp):
TTTAGTAATGTGCAAATGTTTGAACTATATTATC
Found at i:92718204 original size:2 final size:2
Alignment explanation
Indices: 92718197--92718221 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
92718187 CAACATAATC
92718197 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
92718222 AATACCATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92719607 original size:22 final size:22
Alignment explanation
Indices: 92719579--92719622 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
92719569 GAAGAAGATG
92719579 AACATAATTTTGACTTATTTTT
1 AACATAATTTTGACTTATTTTT
92719601 AACATAATTTTGACTTATTTTT
1 AACATAATTTTGACTTATTTTT
92719623 CCTTTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.55
Consensus pattern (22 bp):
AACATAATTTTGACTTATTTTT
Found at i:92723557 original size:42 final size:43
Alignment explanation
Indices: 92723455--92723613 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
92723445 CACATCCATA
* * ** * * ** *
92723455 ATGAACTCGGACCACCCAACGAGCTTGGATGCTCGCATCCATA
1 ATGAACTTGGACCACTCAACGAGCTCAGATTCTCACATATATC
* * * *
92723498 ATGAACTCGGACTACTCAATGAGCTCGGATTC-CACATATATC
1 ATGAACTTGGACCACTCAACGAGCTCAGATTCTCACATATATC
* *
92723540 ATGAACTTGGACCACTCAACAAGTTCAGATTCTCACATATATC
1 ATGAACTTGGACCACTCAACGAGCTCAGATTCTCACATATATC
* *
92723583 ACGAACCTGGACCACTCAACGAGCTCAGATT
1 ATGAACTTGGACCACTCAACGAGCTCAGATT
92723614 TCTAAATTCC
Statistics
Matches: 96, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 32 0.33
43 64 0.67
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGAACTTGGACCACTCAACGAGCTCAGATTCTCACATATATC
Found at i:92725234 original size:19 final size:20
Alignment explanation
Indices: 92725210--92725247 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
92725200 GGTACCACCA
92725210 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
92725229 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
92725248 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:92725583 original size:93 final size:93
Alignment explanation
Indices: 92725476--92725646 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
92725466 GCCCCTAAGT
* *
92725476 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92725541 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
92725569 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92725634 CGAGTTCGGATGC
66 CGAGTTCGGATGC
92725647 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92725643 original size:46 final size:46
Alignment explanation
Indices: 92725471--92725643 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
92725461 AACCCGCCCC
* * *
92725471 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
92725517 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
92725565 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
92725610 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92725644 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:92726100 original size:30 final size:30
Alignment explanation
Indices: 92726066--92726125 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92726056 ATTTAATACG
92726066 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
92726096 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
92726126 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:92733145 original size:93 final size:93
Alignment explanation
Indices: 92733038--92733208 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
92733028 CGCCCTAAGT
* *
92733038 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92733103 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
92733131 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92733196 CGAGTTCGGATGC
66 CGAGTTCGGATGC
92733209 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92733205 original size:46 final size:46
Alignment explanation
Indices: 92733033--92733205 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
92733023 TAACCCGCCC
* * *
92733033 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
92733079 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
92733127 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
92733172 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92733206 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:92733657 original size:30 final size:30
Alignment explanation
Indices: 92733623--92733682 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92733613 ATTTAATACG
92733623 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
92733653 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
92733683 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:92737652 original size:39 final size:40
Alignment explanation
Indices: 92737609--92737772 Score: 147
Period size: 39 Copynumber: 4.2 Consensus size: 40
92737599 TCGAATATAA
*
92737609 CCGGATATAACAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
92737648 CCGGATAGAATAACTCGCACGAATGCC-TCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
92737687 CCGGATGTAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
92737726 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
92737765 CCGGATAT
1 CCGGATAT
92737773 CATTCAATTT
Statistics
Matches: 100, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 86 0.86
40 14 0.14
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:92741826 original size:8 final size:8
Alignment explanation
Indices: 92741813--92741851 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
92741803 ATCGACAAAA
92741813 GCCGAAAT
1 GCCGAAAT
92741821 GCCGAAAT
1 GCCGAAAT
*
92741829 GCCGAAAA
1 GCCGAAAT
*
92741837 GTCGAAAT
1 GCCGAAAT
92741845 GCCGAAA
1 GCCGAAA
92741852 AGGTGAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.41, C:0.23, G:0.26, T:0.10
Consensus pattern (8 bp):
GCCGAAAT
Found at i:92742106 original size:29 final size:28
Alignment explanation
Indices: 92742051--92742165 Score: 104
Period size: 29 Copynumber: 4.0 Consensus size: 28
92742041 GTGAGCATTA
* *
92742051 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
* *
92742079 ATATAAATGTGATTTGGGCCTATTGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
** * * *
92742108 ATATTCAGGCGATTTGGGCTTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* * *
92742137 ATATGAATATGATTGGGCTTCATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
92742165 A
1 A
92742166 GATACAGGTA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 27 0.39
29 43 0.61
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:92744129 original size:40 final size:39
Alignment explanation
Indices: 92743979--92744131 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
92743969 AAATGTTCGA
* *
92743979 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
92744018 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
92744057 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
92744096 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
92744132 GGTTACCATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:92744147 original size:40 final size:39
Alignment explanation
Indices: 92743980--92744162 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
92743970 AATGTTCGAG
* * *
92743980 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
92744019 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
92744058 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
92744097 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
92744137 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
92744163 GTTTGAACGA
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.68
40 41 0.32
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:92744198 original size:79 final size:79
Alignment explanation
Indices: 92743986--92744200 Score: 177
Period size: 78 Copynumber: 2.7 Consensus size: 79
92743976 CGAGTGATAT
** * * * * * *
92743986 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCT-AA-GCCCGAAGGCAATTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCC-GGATAAACTCCCGAAGGCAATTG
** *
92744049 TGCGAGTTATGATAT
65 TGCGAGTTACCATAA
** * * * * *
92744064 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
*
92744129 GCGGGTTACCATAA
66 GCGAGTTACCATAA
* **
92744143 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGGATAAACT-CCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGATAAACTCCCGAAGG
92744201 TATGTGATTC
Statistics
Matches: 114, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 40 0.35
79 40 0.35
80 30 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
GCGAGTTACCATAA
Found at i:92752144 original size:40 final size:39
Alignment explanation
Indices: 92751994--92752146 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
92751984 AAATGTTCGA
* *
92751994 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
92752033 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
92752072 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
92752111 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
92752147 GGTTACCATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:92752162 original size:40 final size:39
Alignment explanation
Indices: 92751995--92752177 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
92751985 AATGTTCGAG
* * *
92751995 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
92752034 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
92752073 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
92752112 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
92752152 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
92752178 GTTTGAACGA
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.68
40 41 0.32
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:92752213 original size:79 final size:79
Alignment explanation
Indices: 92752001--92752215 Score: 177
Period size: 78 Copynumber: 2.7 Consensus size: 79
92751991 CGAGTGATAT
** * * * * * *
92752001 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCT-AA-GCCCGAAGGCAATTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCC-GGATAAACTCCCGAAGGCAATTG
** *
92752064 TGCGAGTTATGATAT
65 TGCGAGTTACCATAA
** * * * * *
92752079 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
*
92752144 GCGGGTTACCATAA
66 GCGAGTTACCATAA
* **
92752158 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGGATAAACT-CCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGATAAACTCCCGAAGG
92752216 TATGTGATTC
Statistics
Matches: 114, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 40 0.35
79 40 0.35
80 30 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
GCGAGTTACCATAA
Found at i:92756293 original size:2 final size:2
Alignment explanation
Indices: 92756286--92756322 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
92756276 GCTTCTTCTT
92756286 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92756323 GCACCTAGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:92757478 original size:12 final size:12
Alignment explanation
Indices: 92757461--92757498 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
92757451 GGTTTGGCAA
92757461 GGCCTAGCACAC
1 GGCCTAGCACAC
*
92757473 GGCCTAGCACAG
1 GGCCTAGCACAC
92757485 GGCCTAGCACAC
1 GGCCTAGCACAC
92757497 GG
1 GG
92757499 GCGTGTATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.24, C:0.37, G:0.32, T:0.08
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:92771155 original size:27 final size:28
Alignment explanation
Indices: 92771098--92771167 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
92771088 AAATTTGTAC
** *
92771098 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
92771126 AGCACTAAGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
92771153 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
92771168 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.62
28 15 0.38
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:92774735 original size:20 final size:20
Alignment explanation
Indices: 92774699--92774736 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
92774689 ATGTTATAAG
*
92774699 TAATGGTTGTTGCAGTTTCC
1 TAATGGATGTTGCAGTTTCC
92774719 TAATGGATGATTG-AGTTT
1 TAATGGATG-TTGCAGTTT
92774737 AGAGTTCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.21, C:0.08, G:0.26, T:0.45
Consensus pattern (20 bp):
TAATGGATGTTGCAGTTTCC
Found at i:92779872 original size:17 final size:17
Alignment explanation
Indices: 92779842--92779879 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
92779832 AACGGGCTGT
* *
92779842 CACATGGTCGTGTGACA
1 CACATAGTCATGTGACA
92779859 CACATAGTCATGTGACA
1 CACATAGTCATGTGACA
92779876 CACA
1 CACA
92779880 CGGCTGTGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (17 bp):
CACATAGTCATGTGACA
Found at i:92780395 original size:26 final size:26
Alignment explanation
Indices: 92780366--92780450 Score: 107
Period size: 27 Copynumber: 3.2 Consensus size: 26
92780356 GTACTATAAG
92780366 TGAACAACCTTTGTGCGTACTCTGAA
1 TGAACAACCTTTGTGCGTACTCTGAA
* *
92780392 TGAATAACCTTTGTCACGTACTCTGAA
1 TGAACAACCTTTGT-GCGTACTCTGAA
* * *
92780419 TGAATAGCCTTTGTGTCGCACTCTGAA
1 TGAACAACCTTTGTG-CGTACTCTGAA
92780446 TGAAC
1 TGAAC
92780451 TGTATTCGTG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 13 0.25
27 38 0.75
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (26 bp):
TGAACAACCTTTGTGCGTACTCTGAA
Found at i:92782496 original size:48 final size:48
Alignment explanation
Indices: 92782421--92782651 Score: 242
Period size: 48 Copynumber: 4.9 Consensus size: 48
92782411 CACATAGTAA
* * * *
92782421 GATGCCAATGCCATATCCCGAATATGGTTTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
92782469 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
* * *
92782517 AATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATATATC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
* * * ** ** *
92782565 GATGCCGAT---A-G--CCTAGCTATGGTCTTACATGAAATTGCATATT
1 GATGCCAATGCCATGTCCCAAAC-ATGGTCTTACATGGGATCACATATC
* *
92782608 GATGCCAAAT-CCATGTCCCAAACATGGTCTTACACGAGATCACA
1 GATGCC-AATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
92782652 CGTAACCCTA
Statistics
Matches: 151, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
42 3 0.02
43 25 0.17
44 3 0.02
45 1 0.01
46 1 0.01
47 1 0.01
48 113 0.75
49 4 0.03
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
Found at i:92792377 original size:19 final size:19
Alignment explanation
Indices: 92792353--92792396 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
92792343 CTAAACTGAG
92792353 AACTTTCAAAACCTTTTTA
1 AACTTTCAAAACCTTTTTA
*
92792372 AACTTTCGAAACCTTTTTA
1 AACTTTCAAAACCTTTTTA
92792391 ACACTT
1 A-ACTT
92792397 AGAAAGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.34, C:0.23, G:0.02, T:0.41
Consensus pattern (19 bp):
AACTTTCAAAACCTTTTTA
Found at i:92792401 original size:19 final size:19
Alignment explanation
Indices: 92792361--92792401 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
92792351 AGAACTTTCA
*
92792361 AAACCTTTTTAAACTTTCG
1 AAACCTTTTTAAACTTTAG
92792380 AAACCTTTTTAACAC-TTAG
1 AAACCTTTTTAA-ACTTTAG
92792399 AAA
1 AAA
92792402 GTTTTCTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.37
Consensus pattern (19 bp):
AAACCTTTTTAAACTTTAG
Found at i:92793949 original size:45 final size:45
Alignment explanation
Indices: 92793899--92793985 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
92793889 CCAAAACATG
92793899 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
* *
92793944 TGTCACATATATCATGAACTCAGACCACAACTTAATGAGTTC
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTC
92793986 AGATTACATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
Found at i:92795948 original size:40 final size:39
Alignment explanation
Indices: 92795904--92796018 Score: 131
Period size: 39 Copynumber: 2.9 Consensus size: 39
92795894 AAGTGACTAT
* * *
92795904 ATCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAA
1 ATCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAAGAA
* * *
92795944 ATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACGAA
1 ATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAAGAA
* * *
92795983 ACCCGGGTTAAGTCTCGAAGACATTCGTGCGAGTTA
1 ATCCGGGCTAAGTC-CGAAGGCATTCGTGCGAGTTA
92796019 CTATAACCGG
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 33 0.52
40 30 0.48
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAAGAA
Found at i:92795973 original size:39 final size:40
Alignment explanation
Indices: 92795865--92796056 Score: 167
Period size: 40 Copynumber: 4.8 Consensus size: 40
92795855 TTGAATGATG
* ** * *
92795865 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTG-CGAGTTACTAAA
* * *
92795905 TCCGGACTAAGAT-CCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
92795945 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACGAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * * *
92795984 CCCGGGTTAAGTCTCGAAGACATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
92796025 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
92796057 CGTTATATCC
Statistics
Matches: 122, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
39 32 0.26
40 82 0.67
41 8 0.07
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:92796029 original size:40 final size:39
Alignment explanation
Indices: 92795918--92796031 Score: 122
Period size: 39 Copynumber: 2.9 Consensus size: 39
92795908 GGACTAAGAT
* * * *
92795918 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGCTAAGC
1 CCGAAGACATTCGTGCGAGTTACTAAACCCGGGCTAAGC
* * * *
92795957 CCGAAGGCATTGGTGCGAGTTACGAAACCCGGGTTAAGTC
1 CCGAAGACATTCGTGCGAGTTACTAAACCCGGGCTAAG-C
*
92795997 TCGAAGACATTCGTGCGAGTTACTATAA-CCGGGCT
1 CCGAAGACATTCGTGCGAGTTACTA-AACCCGGGCT
92796032 TTGTCCCGAA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
39 32 0.52
40 28 0.45
41 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (39 bp):
CCGAAGACATTCGTGCGAGTTACTAAACCCGGGCTAAGC
Found at i:92800462 original size:40 final size:40
Alignment explanation
Indices: 92800368--92800592 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
92800358 TATTCGAATG
*
92800368 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
92800409 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
92800449 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
** * *
92800489 ATATCTAGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
92800529 ATATCCGGGCTAAG-TCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
92800569 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
92800593 CTTGTGCAAG
Statistics
Matches: 157, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 126 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:92800542 original size:80 final size:79
Alignment explanation
Indices: 92800368--92800628 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 79
92800358 TATTCGAATG
* * * *
92800368 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCAGG-CTAAGACCCGAAGGC
*
92800433 ATTCGTGCGAGTTGCT
64 ATTCGTGCGAGTCGCT
* * *
92800449 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTAGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATC-AGGCTAAGACCCGAAGGCA
* *
92800514 TTTGTGCTAG-CGACT
65 TTCGTGCGAGTCG-CT
* * * *
92800529 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT-CAGGCTAAGACCCGAAGGCA
* * *
92800594 TT-GTGCAAGTAGTT
65 TTCGTGCGAGTCGCT
*
92800608 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
92800629 ATTACTTGAG
Statistics
Matches: 155, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 92 0.59
81 35 0.23
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCAGGCTAAGACCCGAAGGCAT
TCGTGCGAGTCGCT
Found at i:92800582 original size:120 final size:121
Alignment explanation
Indices: 92800375--92800592 Score: 318
Period size: 120 Copynumber: 1.8 Consensus size: 121
92800365 ATGATATCCG
* * *
92800375 GGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGCATTCGTG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCATTCGTG
*
92800440 CGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTA
66 CGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTA
* *
92800496 GGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGGCA-TCTG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGGCATTC-G
*
92800558 TGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
64 TGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
92800593 CTTGTGCAAG
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
119 5 0.06
120 57 0.66
121 25 0.29
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (121 bp):
GGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCATTCGTG
CGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTA
Found at i:92808615 original size:40 final size:41
Alignment explanation
Indices: 92808537--92808756 Score: 182
Period size: 40 Copynumber: 5.5 Consensus size: 41
92808527 CGAATGATAT
* *
92808537 CCGGGCTAAG-TCCGAAGGCTTTTGTGCTAGGTGACTATAA
1 CCGGGCTAAGATCCGAAGGCATTTGTGCGAGGTGACTATAA
* * * *
92808577 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CTATAT
1 CCGGGCTAAGATCCGAAGGCATTTGTGCGAGGTGACTATAA
* * * * * *
92808617 CTGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGATTATAT
1 CCGGGCTAAGATCCGAAGGCATTTGTGCGAGGTGACTATAA
** * * * *
92808657 CTAGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATAT
1 CCGGGCTAAGATCCGAAGGCATTTGTGCGAGGTGACTATAA
* * * *
92808697 CCGGGCTAAG-TCCCGAAGGCATCTGTGCTA-GTGACCATAT
1 CCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGGTGACTATAA
*
92808737 CCGGGCTAAGACCCGAAGGC
1 CCGGGCTAAGATCCGAAGGC
92808757 CTTGTGCAAG
Statistics
Matches: 153, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 133 0.87
41 19 0.12
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (41 bp):
CCGGGCTAAGATCCGAAGGCATTTGTGCGAGGTGACTATAA
Found at i:92808666 original size:80 final size:78
Alignment explanation
Indices: 92808533--92808756 Score: 252
Period size: 80 Copynumber: 2.8 Consensus size: 78
92808523 TTATCGAATG
* * * * *
92808533 ATATCCGGGCTAAGTCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGCCCGAAGGCATTTGTGCTA-GTGACTATATCAGG-CTAAGACCCGAAGGCA
*
92808598 TTCGTGCGAGTTG-CT
64 TTCGTGCGAG-CGACT
* * *
92808613 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTAGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACTATATC-AGGCTAAGACCCGAAGGCA
* *
92808678 TTTGTGCTAGCGACT
64 TTCGTGCGAGCGACT
* * *
92808693 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACTATAT-CAGGCTAAGACCCGAAGGC
92808757 CTTGTGCAAG
Statistics
Matches: 122, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 101 0.83
81 20 0.16
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGGCATTTGTGCTAGTGACTATATCAGGCTAAGACCCGAAGGCATT
CGTGCGAGCGACT
Found at i:92808746 original size:120 final size:120
Alignment explanation
Indices: 92808540--92808756 Score: 298
Period size: 120 Copynumber: 1.8 Consensus size: 120
92808530 ATGATATCCG
* * *
92808540 GGCTAAGTCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGCATTCGTGC
1 GGCTAAGCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCATTCGTGC
* *
92808605 GAGTTGCTATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTA
66 GAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTA
* *
92808660 GGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGGCA-TCTG
1 GGCTAAG-CCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGGCATTC-G
*
92808722 TGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
63 TGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
92808757 CTTGTGCAAG
Statistics
Matches: 85, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
119 5 0.06
120 63 0.74
121 17 0.20
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (120 bp):
GGCTAAGCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCATTCGTGC
GAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTA
Found at i:92811170 original size:32 final size:32
Alignment explanation
Indices: 92811132--92811235 Score: 208
Period size: 32 Copynumber: 3.2 Consensus size: 32
92811122 AAAAAAAAAG
92811132 AGAGCATGAGTTCTTAAAATAAGATGTACAAA
1 AGAGCATGAGTTCTTAAAATAAGATGTACAAA
92811164 AGAGCATGAGTTCTTAAAATAAGATGTACAAA
1 AGAGCATGAGTTCTTAAAATAAGATGTACAAA
92811196 AGAGCATGAGTTCTTAAAATAAGATGTACAAA
1 AGAGCATGAGTTCTTAAAATAAGATGTACAAA
92811228 AGAGCATG
1 AGAGCATG
92811236 TGAAAGCAAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 72 1.00
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (32 bp):
AGAGCATGAGTTCTTAAAATAAGATGTACAAA
Found at i:92815889 original size:79 final size:79
Alignment explanation
Indices: 92815740--92815957 Score: 241
Period size: 79 Copynumber: 2.7 Consensus size: 79
92815730 GAATCACATA
* * * *
92815740 CCTTCGGAAT-TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATA
1 CCTTCGG-ATCTTAACCGGATATAG-TACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATA
92815803 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* *
92815819 CCTTTGGGA-CTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-T
1 CC-TTCGGATCTTAA-CCGGATATAGT-ACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATAT
92815881 AGTAACTCGCACAAATG
63 AGTAACTCGCACAAATG
* * *
92815898 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTA-ACCGGATATAGT-AC-TCGCACCAATGCCTTCGGGACTTAGCCCGGA
92815958 CATCATTCGA
Statistics
Matches: 118, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
78 5 0.04
79 65 0.55
80 48 0.41
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CCTTCGGATCTTAACCGGATATAGTACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:92815957 original size:40 final size:40
Alignment explanation
Indices: 92815754--92815957 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
92815744 CGGAATTTAA
* *
92815754 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
92815794 CCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92815834 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
92815873 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
92815913 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
92815953 CCGGA
1 CCGGA
92815958 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:92816672 original size:2 final size:2
Alignment explanation
Indices: 92816665--92816692 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
92816655 TCATGTGCAA
92816665 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92816693 GCAAGAGCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92818315 original size:21 final size:21
Alignment explanation
Indices: 92818289--92818339 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
92818279 CGCACATAAG
*
92818289 TGCCTCATACGTAGCTAAAGC
1 TGCCTCATACATAGCTAAAGC
92818310 TGCCTCATACATAGCTAAAGC
1 TGCCTCATACATAGCTAAAGC
**
92818331 CACCTCATA
1 TGCCTCATA
92818340 TCACATAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (21 bp):
TGCCTCATACATAGCTAAAGC
Found at i:92825958 original size:29 final size:29
Alignment explanation
Indices: 92825856--92825957 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
92825846 GTGACGAGAT
92825856 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
92825885 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
92825914 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
92825943 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
92825958 GGGTTTAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 61 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:92826014 original size:28 final size:28
Alignment explanation
Indices: 92825945--92826045 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
92825935 GAAGGGTATG
* * * *
92825945 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
92825975 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
92826003 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
92826032 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
92826046 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:92833744 original size:29 final size:29
Alignment explanation
Indices: 92833642--92833743 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
92833632 GTGACGAGAT
92833642 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
92833671 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
92833700 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
92833729 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
92833744 GGGTTTAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 61 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:92833800 original size:28 final size:28
Alignment explanation
Indices: 92833731--92833831 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
92833721 GAAGGGTATG
* * * *
92833731 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
92833761 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
92833789 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
92833818 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
92833832 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:92838135 original size:53 final size:52
Alignment explanation
Indices: 92837953--92838212 Score: 268
Period size: 53 Copynumber: 4.9 Consensus size: 52
92837943 ATTAGGGTTT
* * * *
92837953 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAG--TTATAAGGC
* * * * * * *
92838007 AAGGAAATCATGTAAGACCATGACAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGT-AAGT--TATAAGGC
* * * * *
92838062 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTGATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT-ATAAGGC
* * *
92838115 AAGGATACCACGTAAGACCATGTCAAGACTTGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT-ATAAGGC
**
92838168 AAGGATACCACGTAAGACCATGTAAAGACATGGCAATGGTAAGTT
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
92838213 TAAAAAGGAA
Statistics
Matches: 174, Mismatches: 28, Indels: 9
0.82 0.13 0.04
Matches are distributed among these distances:
52 1 0.01
53 96 0.55
54 36 0.21
55 41 0.24
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (52 bp):
AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTATAAGGC
Found at i:92838207 original size:106 final size:108
Alignment explanation
Indices: 92837953--92838212 Score: 308
Period size: 106 Copynumber: 2.4 Consensus size: 108
92837943 ATTAGGGTTT
* * * *
92837953 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCAT
1 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAG-TTGACAAGGCAAGGAAACCAC
*
92838018 GTAAGACCATGACAAGACATGGCATTGATAAACTACTATAAGGC
65 GTAAGACCATGACAAGACATGGCAATGATAAACTACTATAAGGC
* * * * * *
92838062 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTGATAAGGCAAGGATACCACG
1 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTGACAAGGCAAGGAAACCACG
* * * * * *
92838127 TAAGACCATGTCAAGACTTGGCAATGGT-GAGTTC-ATAAGGC
66 TAAGACCATGACAAGACATGGCAATGATAAACTACTATAAGGC
* ** *
92838168 AAGGATACCACGTAAGACCATGTAAAGACATGGCAATGGTAAGTT
1 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTT
92838213 TAAAAAGGAA
Statistics
Matches: 127, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
106 45 0.35
107 3 0.02
108 41 0.32
109 38 0.30
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (108 bp):
AAGGATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTGACAAGGCAAGGAAACCACG
TAAGACCATGACAAGACATGGCAATGATAAACTACTATAAGGC
Found at i:92839299 original size:17 final size:18
Alignment explanation
Indices: 92839257--92839305 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
92839247 AGTTGAAAAG
92839257 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
92839276 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
92839293 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
92839306 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:92840188 original size:40 final size:40
Alignment explanation
Indices: 92840122--92840288 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
92840112 AAATTGAATG
* * *
92840122 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
92840161 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
92840201 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
92840241 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
92840281 ATATCCGG
1 ATATCCGG
92840289 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:92847300 original size:17 final size:18
Alignment explanation
Indices: 92847258--92847306 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
92847248 AGTTGAAAAG
92847258 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
92847277 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
92847294 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
92847307 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:92848195 original size:40 final size:40
Alignment explanation
Indices: 92848129--92848295 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
92848119 AAATTGAATG
* * *
92848129 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
92848168 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
92848208 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
92848248 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
92848288 ATATCCGG
1 ATATCCGG
92848296 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:92850955 original size:40 final size:40
Alignment explanation
Indices: 92850911--92851005 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
92850901 CACGGGTTTG
* * *
92850911 CTCACACAAGCTATCGGTTAGGATGTAGCTACACAGGCTA
1 CTCACACAAGCTATCGGTCAGGACGTAGCTACACAGACTA
*
92850951 CTCACACAAGCTATCGGTCAGGACGTAGCTACACAGACTG
1 CTCACACAAGCTATCGGTCAGGACGTAGCTACACAGACTA
92850991 CTCACACAAGCTATC
1 CTCACACAAGCTATC
92851006 TGGTATTCGC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (40 bp):
CTCACACAAGCTATCGGTCAGGACGTAGCTACACAGACTA
Found at i:92854167 original size:9 final size:9
Alignment explanation
Indices: 92854155--92854193 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
92854145 TGAAATTTTC
92854155 AAAATCATA
1 AAAATCATA
92854164 AAAATCATA
1 AAAATCATA
* **
92854173 GACCTCATA
1 AAAATCATA
92854182 AAAATCATA
1 AAAATCATA
92854191 AAA
1 AAA
92854194 TAATTATTTC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.62, C:0.15, G:0.03, T:0.21
Consensus pattern (9 bp):
AAAATCATA
Found at i:92860901 original size:48 final size:48
Alignment explanation
Indices: 92860809--92860967 Score: 195
Period size: 48 Copynumber: 3.3 Consensus size: 48
92860799 GGTTTATCAA
*
92860809 CATGTCTGGGACAT-GCATCGG--C-TATGAGATGTGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGCACGTAT-AGAGGTGTCAGTGTAAGAC
*
92860854 CATGTCTGGGACATGGCATTGGCACGTATAGAGGTGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGCACGTATAGAGGTGTCAGTGTAAGAC
* *
92860902 CATGTCTGGGACATGGCATCAGCACGGATATATGA-GT-TCTAGTGTGAGAC
1 CATGTCTGGGACATGGCATCGGCAC-G-TATA-GAGGTGTC-AGTGTAAGAC
92860952 CATGTCTGGGACATGG
1 CATGTCTGGGACATGG
92860968 TGTTCACCTC
Statistics
Matches: 101, Mismatches: 5, Indels: 11
0.86 0.04 0.09
Matches are distributed among these distances:
45 14 0.14
46 6 0.06
48 42 0.42
49 6 0.06
50 31 0.31
51 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.26
Consensus pattern (48 bp):
CATGTCTGGGACATGGCATCGGCACGTATAGAGGTGTCAGTGTAAGAC
Found at i:92860967 original size:50 final size:48
Alignment explanation
Indices: 92860809--92861021 Score: 190
Period size: 48 Copynumber: 4.4 Consensus size: 48
92860799 GGTTTATCAA
* *
92860809 CATGTCTGGGACAT-GCATC-G-GC-TATGAGATGTGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCAGCACGTAT-AGAGGTGTCAGTGTAAGAC
**
92860854 CATGTCTGGGACATGGCATTGGCACGTATAGAGGTGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCAGCACGTATAGAGGTGTCAGTGTAAGAC
*
92860902 CATGTCTGGGACATGGCATCAGCACGGATATATGA-GT-TCTAGTGTGAGAC
1 CATGTCTGGGACATGGCATCAGCAC-G-TATA-GAGGTGTC-AGTGTAAGAC
** * * * * *
92860952 CATGTCTGGGACATGGTGTTCACCTCAATTTCGA--TAGTCAGTGTAAGAC
1 CATGTCTGGGACATGG-CATCAGCAC-GTATAGAGGT-GTCAGTGTAAGAC
92861001 CATGTCTGGGACATGGCATCA
1 CATGTCTGGGACATGGCATCA
92861022 ACTTGATGGA
Statistics
Matches: 140, Mismatches: 17, Indels: 19
0.80 0.10 0.11
Matches are distributed among these distances:
45 14 0.10
46 4 0.03
47 1 0.01
48 46 0.33
49 33 0.24
50 35 0.25
51 7 0.05
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (48 bp):
CATGTCTGGGACATGGCATCAGCACGTATAGAGGTGTCAGTGTAAGAC
Found at i:92868630 original size:50 final size:48
Alignment explanation
Indices: 92868510--92868630 Score: 145
Period size: 48 Copynumber: 2.5 Consensus size: 48
92868500 GAAATGTGTC
** * *
92868510 AGTGTAAGACCAT-TATTGGGACATGGCATCGGCACCTATAGAGGTGTT
1 AGTGTAAGACCATGTA-TGGGACATGGCATCGGCACAGATAGAGGAGCT
* *
92868558 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTATGGGACATGGCATCGGCACAGATA-GAG-GAGCT
*
92868608 AGTGTAAGACCATGTATAGGACA
1 AGTGTAAGACCATGTATGGGACA
92868631 CGGCGTCAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 35 0.56
49 3 0.05
50 24 0.39
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTATGGGACATGGCATCGGCACAGATAGAGGAGCT
Found at i:92868679 original size:49 final size:49
Alignment explanation
Indices: 92868608--92868735 Score: 193
Period size: 49 Copynumber: 2.6 Consensus size: 49
92868598 TGTGAGAGCT
* * *
92868608 AGTGTAAGACCATGTATAGGACACGGCGTCAACCTCGATTTCGGTAGTC
1 AGTGTAAGACCATGTATGGGACACGGCATCAACCTCGATTTCGATAGTC
* *
92868657 AGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATTTCGATAGTC
1 AGTGTAAGACCATGTATGGGACACGGCATCAACCTCGATTTCGATAGTC
* *
92868706 AGTGTAAGACCATGTTTGGGACATGGCATC
1 AGTGTAAGACCATGTATGGGACACGGCATC
92868736 GACTTGATGG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCATGTATGGGACACGGCATCAACCTCGATTTCGATAGTC
Found at i:92868779 original size:47 final size:48
Alignment explanation
Indices: 92868558--92868783 Score: 183
Period size: 49 Copynumber: 4.6 Consensus size: 48
92868548 TAGAGGTGTT
* * * * *
92868558 AGTGTAAGACCATGT-TTGGGACATGGCATCGGCAC-AGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTT-GGACATGGCATCGAC-CTCGAT-T-CGATAGCC
* * * * * * *
92868608 AGTGTAAGACCATGTATAGGACACGGCGTCAACCTCGATTTCGGTAGTC
1 AGTGTAAGACCATGTCTTGGACATGGCATCGACCTCGA-TTCGATAGCC
* * *
92868657 AGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATTTCGATAGTC
1 AGTGTAAGACCATGTCTTGGACATGGCATCGACCTCGA-TTCGATAGCC
* *
92868706 AGTGTAAGACCATGT-TTGGGACATGGCATCGA-CTTGA-TGGATGAGCC
1 AGTGTAAGACCATGTCTT-GGACATGGCATCGACCTCGATTCGAT-AGCC
*
92868753 AGTGTAAGACCATGTCTTGGATATGGCATCG
1 AGTGTAAGACCATGTCTTGGACATGGCATCG
92868784 GTATTATACC
Statistics
Matches: 148, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
46 4 0.03
47 30 0.20
48 7 0.05
49 76 0.51
50 29 0.20
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTTGGACATGGCATCGACCTCGATTCGATAGCC
Found at i:92868925 original size:120 final size:120
Alignment explanation
Indices: 92868779--92869020 Score: 475
Period size: 120 Copynumber: 2.0 Consensus size: 120
92868769 TTGGATATGG
*
92868779 CATCGGTATTATACCCTATGTTTGAGGCTTAGTGAATATCCGATAGCTTTCGAAATGGTTCAACG
1 CATCGGCATTATACCCTATGTTTGAGGCTTAGTGAATATCCGATAGCTTTCGAAATGGTTCAACG
92868844 GTGAGAGTTACAATTTAAGTTAAATGAGAAAAGTATAACCATGTTGTGAGTGGTA
66 GTGAGAGTTACAATTTAAGTTAAATGAGAAAAGTATAACCATGTTGTGAGTGGTA
92868899 CATCGGCATTATACCCTATGTTTGAGGCTTAGTGAATATCCGATAGCTTTCGAAATGGTTCAACG
1 CATCGGCATTATACCCTATGTTTGAGGCTTAGTGAATATCCGATAGCTTTCGAAATGGTTCAACG
92868964 GTGAGAGTTACAATTTAAGTTAAATGAGAAAAGTATAACCATGTTGTGAGTGGTA
66 GTGAGAGTTACAATTTAAGTTAAATGAGAAAAGTATAACCATGTTGTGAGTGGTA
92869019 CA
1 CA
92869021 GGTACCTATT
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 121 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (120 bp):
CATCGGCATTATACCCTATGTTTGAGGCTTAGTGAATATCCGATAGCTTTCGAAATGGTTCAACG
GTGAGAGTTACAATTTAAGTTAAATGAGAAAAGTATAACCATGTTGTGAGTGGTA
Found at i:92870218 original size:22 final size:21
Alignment explanation
Indices: 92870193--92870242 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
92870183 ATTTTCTTAT
* *
92870193 TATTTTCTCCTTATTTTGCTAC
1 TATTTTCT-ATTATGTTGCTAC
*
92870215 TATTGTACTATTATGTTGCTAC
1 TATT-TTCTATTATGTTGCTAC
92870237 TATTTT
1 TATTTT
92870243 GTTGTTATTG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.83
23 3 0.13
ACGTcount: A:0.18, C:0.16, G:0.08, T:0.58
Consensus pattern (21 bp):
TATTTTCTATTATGTTGCTAC
Found at i:92872135 original size:19 final size:19
Alignment explanation
Indices: 92872111--92872149 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
92872101 GATATGGTTG
92872111 ACTATATGTGTGATATGAC
1 ACTATATGTGTGATATGAC
92872130 ACTATATGTGTGATATGAC
1 ACTATATGTGTGATATGAC
92872149 A
1 A
92872150 TACTTCCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (19 bp):
ACTATATGTGTGATATGAC
Found at i:92874811 original size:13 final size:13
Alignment explanation
Indices: 92874795--92874820 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92874785 GGAATAATTT
92874795 TTTGAAAATTTCG
1 TTTGAAAATTTCG
92874808 TTTGAAAATTTCG
1 TTTGAAAATTTCG
92874821 ATGTCTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TTTGAAAATTTCG
Found at i:92880507 original size:37 final size:37
Alignment explanation
Indices: 92880456--92880531 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
92880446 ATGATCGATG
*
92880456 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
92880493 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
92880530 TT
1 TT
92880532 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:92886636 original size:28 final size:27
Alignment explanation
Indices: 92886536--92886636 Score: 78
Period size: 28 Copynumber: 3.4 Consensus size: 27
92886526 CAAATTTAAC
* * *
92886536 TGGGCCTTAGCCCATATCAATATTAATC
1 TGGGCC-TAGCCCATATCAGTATCAATT
*
92886564 TGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 TGGGCC-TAGCCCATAT-CAGTATCA-A-T-T
92886595 ACTGGGCCTAGCCCATATCAGTATCAATT
1 --TGGGCCTAGCCCATATCAGTATCAATT
92886624 TGGGCCGTAGCCC
1 TGGGCC-TAGCCC
92886637 TATTACAAGT
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
27 7 0.12
28 25 0.42
29 2 0.03
30 2 0.03
31 1 0.02
32 15 0.25
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (27 bp):
TGGGCCTAGCCCATATCAGTATCAATT
Found at i:92886661 original size:60 final size:59
Alignment explanation
Indices: 92886534--92886672 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 59
92886524 ATCAAATTTA
* *
92886534 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTAT
* * *
92886595 ACTGGGCCTAGCCCATATCAGTATCAATTTGGGCCGTAGCCCTATTACA-AGTC-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TAT
* *
92886655 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
92886673 TAACATAGTT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 51 0.75
61 13 0.19
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTAT
Found at i:92891546 original size:38 final size:38
Alignment explanation
Indices: 92891495--92891571 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
92891485 GAATTAAATG
92891495 TCAATATGTTATATTATATTTAGACTCAAACTTAGCTT
1 TCAATATGTTATATTATATTTAGACTCAAACTTAGCTT
*
92891533 TCAATATGTTATATTATATTTAGACTCACACTTAGCTT
1 TCAATATGTTATATTATATTTAGACTCAAACTTAGCTT
92891571 T
1 T
92891572 TTTAGGCTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.45
Consensus pattern (38 bp):
TCAATATGTTATATTATATTTAGACTCAAACTTAGCTT
Found at i:92893528 original size:47 final size:46
Alignment explanation
Indices: 92893380--92893597 Score: 142
Period size: 47 Copynumber: 4.6 Consensus size: 46
92893370 AGGCTGGCAT
* * ** *
92893380 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTG-CTAGTG
1 CATGTCCCAAACATGGTCTTACACTAGCT-T-AC-TCTCAATGCCGA-TG
* * * * * **
92893429 CCATATCCCAAACATGGTCTTACACTGGCTTGCATCTCGAGGCAAATG
1 -CATGTCCCAAACATGGTCTTACACTAGCTTAC-TCTCAATGCCGATG
92893477 CATGTCCCAAACAT-GTCTTACACTAGCTCT-CGTCTCAATGCCGATG
1 CATGTCCCAAACATGGTCTTACACTAGCT-TAC-TCTCAATGCCGATG
* * *
92893523 CCATGTCCCAAACATGGTGTTACACTGGCTTAC-AT-AATGTGGCCGATG
1 -CATGTCCCAAACATGGTCTTACACTAGCTTACTCTCAA--T-GCCGATG
*
92893571 CATGTCCCAGACAT-GTCTTACACTAGC
1 CATGTCCCAAACATGGTCTTACACTAGC
92893598 ACACAAATAA
Statistics
Matches: 137, Mismatches: 23, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
45 2 0.01
46 36 0.26
47 43 0.31
48 28 0.20
49 2 0.01
50 26 0.19
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAAACATGGTCTTACACTAGCTTACTCTCAATGCCGATG
Found at i:92893538 original size:94 final size:92
Alignment explanation
Indices: 92893284--92893597 Score: 269
Period size: 94 Copynumber: 3.3 Consensus size: 92
92893274 ATACCGATGC
* * * *
92893284 CATGTCCCAAACATGGTCTTACACTGGCTCATC-CATCAATTCAATGCCATGTCCTAGACATGGT
1 CATGTCCCAAACATGGTCTTACACTAGCTC-TCTC-TCAATGCAATGCCATGTCCCAAACATGGT
* * **
92893348 CTTACACTGACTATCGAAATCGAGGCTGGCAT-
64 CTTACACTGGCT-TC-ATATCGAGGC--AAATG
* * ** * *
92893380 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCTAGTGCCATATCCCAAACATG
1 CATGTCCCAAACATGGTCTTACACTAGCTCT--C-TCTCAATGC-AATGCCATGTCCCAAACATG
*
92893445 GTCTTACACTGGCTTGCATCTCGAGGCAAATG
62 GTCTTACACTGGCTT-CATATCGAGGCAAATG
*
92893477 CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAAACATGGT
1 CATGTCCCAAACATGGTCTTACACTAGCTCTC-TCTCAATG-CAATGCCATGTCCCAAACATGGT
* * **
92893541 GTTACACTGGCTTACATAAT-GTGGCCGATG
64 CTTACACTGGCTT-CAT-ATCGAGGCAAATG
*
92893571 CATGTCCCAGACAT-GTCTTACACTAGC
1 CATGTCCCAAACATGGTCTTACACTAGC
92893598 ACACAAATAA
Statistics
Matches: 179, Mismatches: 30, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
94 73 0.41
95 3 0.02
96 46 0.26
97 14 0.08
98 13 0.07
99 30 0.17
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (92 bp):
CATGTCCCAAACATGGTCTTACACTAGCTCTCTCTCAATGCAATGCCATGTCCCAAACATGGTCT
TACACTGGCTTCATATCGAGGCAAATG
Found at i:92895323 original size:20 final size:19
Alignment explanation
Indices: 92895290--92895328 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
92895280 AAACTATATG
* *
92895290 AATGAAATAGAATTTAGCAA
1 AATGAAACACAATTT-GCAA
92895310 AATGAAACACAATTTGCAA
1 AATGAAACACAATTTGCAA
92895329 CAATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.23
Consensus pattern (19 bp):
AATGAAACACAATTTGCAA
Found at i:92896144 original size:14 final size:14
Alignment explanation
Indices: 92896125--92896161 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
92896115 AATGATGAAT
92896125 GATGAGGGAT-AGGG
1 GATGAGGGATGA-GG
92896139 GATGAGGGATGAGG
1 GATGAGGGATGAGG
92896153 GATGAGGGA
1 GATGAGGGA
92896162 ATGAAGGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 21 0.95
15 1 0.05
ACGTcount: A:0.30, C:0.00, G:0.57, T:0.14
Consensus pattern (14 bp):
GATGAGGGATGAGG
Found at i:92896149 original size:21 final size:22
Alignment explanation
Indices: 92896125--92896165 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
92896115 AATGATGAAT
*
92896125 GATGAGGGAT-AGGGGATGAGG
1 GATGAGGGATGAGGGAATGAGG
92896146 GATGAGGGATGAGGGAATGA
1 GATGAGGGATGAGGGAATGA
92896166 AGGGGTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.32, C:0.00, G:0.54, T:0.15
Consensus pattern (22 bp):
GATGAGGGATGAGGGAATGAGG
Found at i:92911256 original size:20 final size:20
Alignment explanation
Indices: 92911225--92911274 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
92911215 ATTTGCTACA
*
92911225 TGATTT-GTTGTTGTTTGAT
1 TGATTTAGTTGTTGTTAGAT
*
92911244 TGATTTAGTTGTTGTTAGCT
1 TGATTTAGTTGTTGTTAGAT
*
92911264 TAATTTAGTTG
1 TGATTTAGTTG
92911275 CTACAGCAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.16, C:0.02, G:0.24, T:0.58
Consensus pattern (20 bp):
TGATTTAGTTGTTGTTAGAT
Found at i:92911945 original size:20 final size:19
Alignment explanation
Indices: 92911906--92911945 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
92911896 TAATATTAAA
**
92911906 TATTTATTTTTTTCTTTTT
1 TATTTATTTTTTTCCATTT
92911925 TATTTACTTTTTTTCCATTT
1 TATTTA-TTTTTTTCCATTT
92911945 T
1 T
92911946 CCCCTCTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (19 bp):
TATTTATTTTTTTCCATTT
Found at i:92915253 original size:20 final size:20
Alignment explanation
Indices: 92915228--92915286 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
92915218 TACACTACAC
92915228 CAGAGGCACCGAAGTGCAAA
1 CAGAGGCACCGAAGTGCAAA
* * * *
92915248 CAGAGGTA-CAAATGTGTAAT
1 CAGAGGCACCGAA-GTGCAAA
*
92915268 CATAGGCACCGAAGTGCAA
1 CAGAGGCACCGAAGTGCAA
92915287 TCCCATACAA
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
19 3 0.10
20 23 0.79
21 3 0.10
ACGTcount: A:0.39, C:0.20, G:0.27, T:0.14
Consensus pattern (20 bp):
CAGAGGCACCGAAGTGCAAA
Found at i:92917061 original size:26 final size:26
Alignment explanation
Indices: 92917001--92917064 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
92916991 AACAATTTTC
* *
92917001 TCAAAATTTTACCAGGGGTAAAATCG
1 TCAAAATTTTAACAGGGGTAAAATCA
* *
92917027 TTAAGAATTTTAACAGGGTTAAAATCA
1 TCAA-AATTTTAACAGGGGTAAAATCA
92917054 TCAAAATTTTA
1 TCAAAATTTTA
92917065 TTGGGGTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 10 0.31
27 22 0.69
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTAACAGGGGTAAAATCA
Found at i:92919745 original size:13 final size:13
Alignment explanation
Indices: 92919721--92919761 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
92919711 GAGTTCTTAC
*
92919721 TAGATCTGTCAAT
1 TAGATCTATCAAT
*
92919734 TAGATTTATCAAT
1 TAGATCTATCAAT
92919747 TAGATCTATCAAT
1 TAGATCTATCAAT
92919760 TA
1 TA
92919762 TTATTCTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (13 bp):
TAGATCTATCAAT
Found at i:92922228 original size:110 final size:110
Alignment explanation
Indices: 92922043--92922479 Score: 617
Period size: 110 Copynumber: 4.0 Consensus size: 110
92922033 TATACATAAT
* * *
92922043 TTCATGTATCGTGATATGTCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
1 TTCATGTATCGTGATCTGCCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* * * * *
92922108 CAGACATATCATACT-ATGTGCCTTAACCACATGATCTTACATACA
66 CAAACATATCAT-CTCATGGGTCTTAACCACATGGTCTTACACACA
*
92922153 TTCATGTATCGTGATCTACCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
1 TTCATGTATCGTGATCTGCCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* *
92922218 CAGACATATCATGTCATGGGTCTTAACCACATGGTCTTACACACA
66 CAAACATATCATCTCATGGGTCTTAACCACATGGTCTTACACACA
* * * *
92922263 TTCATGTATCGTAATCTTCCATTTCGATTCATACACTATCGAAGGATACAACATGAATATAAATA
1 TTCATGTATCGTGATCTGCCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* * *
92922328 CAAAAATATCATGTCATGGGTCTTAACCATATGGTCTTACACACA
66 CAAACATATCATCTCATGGGTCTTAACCACATGGTCTTACACACA
* * * * *
92922373 TTTATGTATTGTGATCTGCTATTTCAATTCATACACTATCGAAGGCTACACTATGAATATAAATA
1 TTCATGTATCGTGATCTGCCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* *
92922438 CAAACACATCATGC-CATAGGTCTTAACCACATGGTCTTACAC
66 CAAACATATCAT-CTCATGGGTCTTAACCACATGGTCTTACAC
92922480 TTGTTTTCAT
Statistics
Matches: 295, Mismatches: 30, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
109 1 0.00
110 294 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (110 bp):
TTCATGTATCGTGATCTGCCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
CAAACATATCATCTCATGGGTCTTAACCACATGGTCTTACACACA
Found at i:92923516 original size:13 final size:13
Alignment explanation
Indices: 92923498--92923525 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
92923488 CACAGCAGTT
92923498 ACAATACGCCTAG
1 ACAATACGCCTAG
92923511 ACAATACGCCTAG
1 ACAATACGCCTAG
92923524 AC
1 AC
92923526 CTATGCACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.32, G:0.14, T:0.14
Consensus pattern (13 bp):
ACAATACGCCTAG
Found at i:92924572 original size:8 final size:8
Alignment explanation
Indices: 92924539--92924585 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
92924529 ATATTTTGTT
*
92924539 TTCTTTTT
1 TTCTTTTA
*
92924547 TTATTATTA
1 TTCTT-TTA
92924556 TTC-TTTA
1 TTCTTTTA
92924563 TTCTTTTA
1 TTCTTTTA
92924571 TTCTTTTA
1 TTCTTTTA
92924579 TT-TTTTA
1 TTCTTTTA
92924586 ATTAATCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
7 11 0.32
8 19 0.56
9 4 0.12
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.77
Consensus pattern (8 bp):
TTCTTTTA
Found at i:92924573 original size:15 final size:15
Alignment explanation
Indices: 92924539--92924604 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 15
92924529 ATATTTTGTT
*
92924539 TTCTTTTTTTATTATTA
1 TTCTTTTATT-TT-TTA
92924556 TTC-TTTATTCTTTTA
1 TTCTTTTATT-TTTTA
92924571 TTCTTTTATTTTTTAA
1 TTCTTTTATTTTTT-A
* *
92924587 TTAATCTTATTTTTTA
1 TT-CTTTTATTTTTTA
92924603 TT
1 TT
92924605 TTAAATTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
15 10 0.24
16 19 0.45
17 13 0.31
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (15 bp):
TTCTTTTATTTTTTA
Found at i:92927536 original size:22 final size:20
Alignment explanation
Indices: 92927504--92927543 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
92927494 TGAAAATAAT
*
92927504 TATATAATAAATTTGTAAAA
1 TATATAATAAATATGTAAAA
92927524 TATATAAGTTAAATATGTAA
1 TATATAA--TAAATATGTAA
92927544 GTTGGGAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (20 bp):
TATATAATAAATATGTAAAA
Found at i:92929855 original size:12 final size:12
Alignment explanation
Indices: 92929838--92929862 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92929828 GTTAGAATTT
92929838 AATTAAATTGAA
1 AATTAAATTGAA
92929850 AATTAAATTGAA
1 AATTAAATTGAA
92929862 A
1 A
92929863 GACCAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
AATTAAATTGAA
Found at i:92932798 original size:26 final size:24
Alignment explanation
Indices: 92932734--92932781 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
92932724 AAAGCTTATG
92932734 ATTATTAATTCGTGAAATGACGAT
1 ATTATTAATTCGTGAAATGACGAT
92932758 ATTATTAATTCGTGAAATGACGAT
1 ATTATTAATTCGTGAAATGACGAT
92932782 TTCAAGTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (24 bp):
ATTATTAATTCGTGAAATGACGAT
Found at i:92936998 original size:47 final size:47
Alignment explanation
Indices: 92936940--92937753 Score: 1367
Period size: 47 Copynumber: 17.3 Consensus size: 47
92936930 GTATGAGATA
* *
92936940 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
92936987 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
92937034 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
92937081 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
92937128 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
92937175 CATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
92937222 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
92937269 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
92937316 TATATATGTGACAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
92937363 TATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
92937410 TATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
92937457 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
92937504 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
92937551 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
92937598 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
92937645 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
92937692 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
92937739 TATAAATGTGATAAG
1 TATATATGTGATAAG
92937754 TCCCGAAGGG
Statistics
Matches: 727, Mismatches: 40, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 727 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:92937930 original size:37 final size:37
Alignment explanation
Indices: 92937871--92937947 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
92937861 CCGAGCTCTA
* *
92937871 AAGACCCGATGACTACGTGTGGAGATTATG-CCTGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCC-GGGT
*
92937908 AAGACCCGATGACCACGGGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
92937945 AAG
1 AAG
92937948 CCCAAACTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 34 0.94
38 2 0.06
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:92943730 original size:20 final size:21
Alignment explanation
Indices: 92943692--92943731 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
92943682 GTTATAATGA
92943692 CCACATGGGCGTGTTGCCCTT
1 CCACATGGGCGTGTTGCCCTT
92943713 CCACATGGGCGT-TTGCCCT
1 CCACATGGGCGTGTTGCCCT
92943732 GTTTCATGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.10, C:0.35, G:0.28, T:0.28
Consensus pattern (21 bp):
CCACATGGGCGTGTTGCCCTT
Found at i:92946101 original size:46 final size:46
Alignment explanation
Indices: 92946043--92946213 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 46
92946033 ATATCTCGTA
* *
92946043 GCCGATGCATGTCTCAGACATGTCTTACACTGACTTACATTTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTTACATATCAAG
* * * * *
92946089 GCCGATGCATGTCGCATACATGTCTTACACTAAC--ACTTATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTTAC--ATATCAAG
* * **
92946135 GCCGATGTCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACT-TACAT-ATCAAG
*
92946183 GCCAATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
92946214 ATCTCACACG
Statistics
Matches: 102, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
44 2 0.02
46 54 0.53
47 25 0.25
48 19 0.19
49 1 0.01
50 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTTACATATCAAG
Found at i:92948949 original size:40 final size:39
Alignment explanation
Indices: 92948905--92949095 Score: 215
Period size: 40 Copynumber: 4.8 Consensus size: 39
92948895 GGATATAGCT
* *
92948905 ACTCGCTCAAATGCCTTCGGGACATAGCCCGATTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATT-TAGTA
*
92948945 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GATTTAGTA
* *
92948985 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GATTTAGTA
* * * *
92949024 ACTCGTACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTA
* *
92949064 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
92949096 GATATCATTC
Statistics
Matches: 129, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 68 0.53
41 24 0.19
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTTAGTA
Found at i:92949023 original size:79 final size:79
Alignment explanation
Indices: 92948879--92949097 Score: 248
Period size: 79 Copynumber: 2.7 Consensus size: 79
92948869 GAATCACATA
* * * * *
92948879 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCC-GATTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
92948943 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
92948958 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
*
92949021 GTAACTCGTACAAATG
64 GTAACTCGCACAAATG
* * *
92949037 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
92949098 TATCATTCGA
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.49
80 47 0.39
81 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Done.