Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 298 of 433
Found at i:92965075 original size:21 final size:20
Alignment explanation
Indices: 92965051--92965103 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
92965041 GACCACACGT
*
92965051 GCGTGTAGCCCTTCTACACAG
1 GCGTGT-GCCCTTCCACACAG
* *
92965072 GCGTGTTGCCTTTCCACACGG
1 GCGTG-TGCCCTTCCACACAG
*
92965093 GTGTGTGCCCT
1 GCGTGTGCCCT
92965104 GTTTCATGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 5 0.19
21 20 0.77
22 1 0.04
ACGTcount: A:0.11, C:0.32, G:0.28, T:0.28
Consensus pattern (20 bp):
GCGTGTGCCCTTCCACACAG
Found at i:92970658 original size:14 final size:15
Alignment explanation
Indices: 92970639--92970668 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
92970629 ATATTTAACT
92970639 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
92970653 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
92970668 T
1 T
92970669 TTTGATATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:92973739 original size:23 final size:23
Alignment explanation
Indices: 92973711--92973765 Score: 110
Period size: 23 Copynumber: 2.4 Consensus size: 23
92973701 GTTTAAAAAC
92973711 TTTTATTTTATTTTAAGACTACT
1 TTTTATTTTATTTTAAGACTACT
92973734 TTTTATTTTATTTTAAGACTACT
1 TTTTATTTTATTTTAAGACTACT
92973757 TTTTATTTT
1 TTTTATTTT
92973766 TCTTTCATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.65
Consensus pattern (23 bp):
TTTTATTTTATTTTAAGACTACT
Found at i:92988612 original size:16 final size:16
Alignment explanation
Indices: 92988593--92988627 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
92988583 TTAGAAATAT
92988593 AAAAATTCTCTAAAGG
1 AAAAATTCTCTAAAGG
92988609 AAAAATTCTCTAAAGG
1 AAAAATTCTCTAAAGG
92988625 AAA
1 AAA
92988628 TTTAGAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.23
Consensus pattern (16 bp):
AAAAATTCTCTAAAGG
Found at i:92988888 original size:29 final size:29
Alignment explanation
Indices: 92988855--92988915 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
92988845 CTCTTTTAGA
*
92988855 GTTACCTATCTGGTGCATTATTTTATTAT
1 GTTACCTACCTGGTGCATTATTTTATTAT
92988884 GTTACCTACCTGGTGCATTATTTTATTAT
1 GTTACCTACCTGGTGCATTATTTTATTAT
92988913 GTT
1 GTT
92988916 TTTTATTAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.51
Consensus pattern (29 bp):
GTTACCTACCTGGTGCATTATTTTATTAT
Found at i:92990654 original size:14 final size:13
Alignment explanation
Indices: 92990626--92990659 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
92990616 ATCCTAGAAT
92990626 ATTAA-AACAATA
1 ATTAAGAACAATA
92990638 ATTAAGAACACATA
1 ATTAAGAACA-ATA
92990652 ATTAAGAA
1 ATTAAGAA
92990660 TAAGTCAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 5 0.25
13 4 0.20
14 11 0.55
ACGTcount: A:0.62, C:0.09, G:0.06, T:0.24
Consensus pattern (13 bp):
ATTAAGAACAATA
Found at i:92994069 original size:40 final size:40
Alignment explanation
Indices: 92993995--92994176 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
92993985 AACCCAAGTA
* *
92993995 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
92994034 CCTTCGGGCCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
92994074 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
92994114 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
92994154 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
92994177 CATTCGAATA
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 118 0.89
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:93003488 original size:40 final size:39
Alignment explanation
Indices: 93003382--93003588 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
93003372 CGGAATACAA
* * *
93003382 CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
*
93003422 CC-GATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* *
93003461 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
93003501 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
93003541 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
93003581 CCGGATAT
1 CCGGATAT
93003589 CATTCAATTG
Statistics
Matches: 141, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.23
40 106 0.75
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:93005470 original size:40 final size:40
Alignment explanation
Indices: 93005426--93005577 Score: 268
Period size: 40 Copynumber: 3.8 Consensus size: 40
93005416 ATAGCAACTC
* *
93005426 GCACAAATGCCTTCGGGCCTTAGCTCGGATATAGTCAATA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATA
* *
93005466 GCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATA
93005506 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATA
93005546 GCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGACTTAGCCCGGATAT
93005578 CATTCGAATA
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.22
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATA
Found at i:93008151 original size:13 final size:13
Alignment explanation
Indices: 93008133--93008168 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
93008123 GTCTATGTTT
*
93008133 TCACACGGCCGTA
1 TCACACGGCCATA
93008146 TCACACGGCCATA
1 TCACACGGCCATA
*
93008159 TCGCACGGCC
1 TCACACGGCC
93008169 TTGTTTCCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.22, C:0.42, G:0.22, T:0.14
Consensus pattern (13 bp):
TCACACGGCCATA
Found at i:93026428 original size:40 final size:40
Alignment explanation
Indices: 93026362--93026512 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
93026352 AAATTGAATG
* * *
93026362 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
93026401 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
93026441 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
93026481 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
93026513 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:93026526 original size:40 final size:40
Alignment explanation
Indices: 93026398--93026528 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
93026388 TATGCTGGAA
* * * *
93026398 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
93026438 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
93026478 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
93026518 ATTATATCCGG
1 ATTATATCCGG
93026529 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:93033931 original size:40 final size:40
Alignment explanation
Indices: 93033886--93034053 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
93033876 CGGAATATAA
93033886 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
93033926 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
93033966 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
93034006 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
93034046 CCGGATAT
1 CCGGATAT
93034054 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:93034036 original size:80 final size:80
Alignment explanation
Indices: 93033902--93034051 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
93033892 ATAATCACGT
*
93033902 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
93033966 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
93033982 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
93034045 CCCGGAT
64 CCCGGAT
93034052 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:93045756 original size:37 final size:37
Alignment explanation
Indices: 93045706--93045782 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
93045696 CGACTAACAT
93045706 GTTTGATTGAATGCATTTGTTTAGGCAAATTTGCCAA
1 GTTTGATTGAATGCATTTGTTTAGGCAAATTTGCCAA
93045743 GTTTGATTGAATGCATTTGTTTAGGCAAATTTGCCAA
1 GTTTGATTGAATGCATTTGTTTAGGCAAATTTGCCAA
93045780 GTT
1 GTT
93045783 GATGGAAAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.26, C:0.10, G:0.22, T:0.42
Consensus pattern (37 bp):
GTTTGATTGAATGCATTTGTTTAGGCAAATTTGCCAA
Found at i:93047857 original size:40 final size:40
Alignment explanation
Indices: 93047789--93047951 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
93047779 CGGGATTTAA
** *
93047789 CCGGATATAAC-ACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
93047828 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
93047868 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
93047908 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
93047948 CCGG
1 CCGG
93047952 GTATCATTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
39 9 0.09
40 93 0.89
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:93047911 original size:80 final size:79
Alignment explanation
Indices: 93047775--93047951 Score: 205
Period size: 80 Copynumber: 2.2 Consensus size: 79
93047765 GAATCACGTA
* * * **
93047775 CCTTCGGGATTTA-ACCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
* *
93047839 AACTTGCACAATTG
66 AACTAGCACAAATG
* ** *
93047853 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAAC-ACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
93047917 ATCACTAGCATAAATG
64 ATAACTAGCACAAATG
93047933 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
93047952 GTATCATTCA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 11 0.13
79 11 0.13
80 58 0.71
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATG
Found at i:93049495 original size:29 final size:27
Alignment explanation
Indices: 93049461--93049563 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
93049451 TACTCAATCA
*
93049461 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
93049490 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
93049519 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
93049548 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
93049564 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:93057685 original size:17 final size:18
Alignment explanation
Indices: 93057643--93057691 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
93057633 AGTTGAAAAG
93057643 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
93057662 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
93057679 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
93057692 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:93058580 original size:40 final size:40
Alignment explanation
Indices: 93058514--93058680 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
93058504 AAATTGAATG
* * *
93058514 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
93058553 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
93058593 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
93058633 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
93058673 ATATCCGG
1 ATATCCGG
93058681 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:93060548 original size:29 final size:28
Alignment explanation
Indices: 93060460--93060562 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
93060450 TACTCAATCA
** *
93060460 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-ACATTCAAGCT
* * * *
93060489 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
*
93060518 CGCACACTTAGTGCCATACATTACAGGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
93060547 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
93060563 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:93069823 original size:40 final size:40
Alignment explanation
Indices: 93069755--93069917 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
93069745 CGGGATTTAA
** *
93069755 CCGGATATAAC-ACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
93069794 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
93069834 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
93069874 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
93069914 CCGG
1 CCGG
93069918 TATCATTCAA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
39 9 0.09
40 93 0.89
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:93069877 original size:80 final size:79
Alignment explanation
Indices: 93069741--93069917 Score: 205
Period size: 80 Copynumber: 2.2 Consensus size: 79
93069731 GAATCACGTA
* * * **
93069741 CCTTCGGGATTTA-ACCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
* *
93069805 AACTTGCACAATTG
66 AACTAGCACAAATG
* ** *
93069819 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAAC-ACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
93069883 ATCACTAGCATAAATG
64 ATAACTAGCACAAATG
93069899 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
93069918 TATCATTCAA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 11 0.13
79 11 0.13
80 58 0.71
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATG
Found at i:93078398 original size:43 final size:43
Alignment explanation
Indices: 93078315--93078399 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
93078305 ATGTGATTCT
* *
93078315 GATATGTGTTTACGAGTAAGACCCTGTCTTGGAAAGTGGCATC
1 GATATGTGGTTACGAGTAAGACCCTGTCTGGGAAAGTGGCATC
* *
93078358 GATATGTGGTTAC-ATGTAAGACCAC-GTCTGGGACATTGGCAT
1 GATATGTGGTTACGA-GTAAGACC-CTGTCTGGGAAAGTGGCAT
93078400 TGTACGATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 34 0.94
44 1 0.03
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (43 bp):
GATATGTGGTTACGAGTAAGACCCTGTCTGGGAAAGTGGCATC
Found at i:93086548 original size:43 final size:43
Alignment explanation
Indices: 93086466--93086549 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
93086456 GGATTCCGAT
* * *
93086466 ATATGTGTTTACGAGTAAGACCCTGTCTAGGACAGTGGCATCG
1 ATATGTGGTTACGAGTAAGACCATGCCTAGGACAGTGGCATCG
*
93086509 ATATGTGGTTAC-ATGTAAGACCATGCCTGGGAC-GTTGGCAT
1 ATATGTGGTTACGA-GTAAGACCATGCCTAGGACAG-TGGCAT
93086550 TGTACGATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 2 0.06
43 33 0.94
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
ATATGTGGTTACGAGTAAGACCATGCCTAGGACAGTGGCATCG
Found at i:93091492 original size:47 final size:48
Alignment explanation
Indices: 93091419--93091688 Score: 258
Period size: 47 Copynumber: 5.8 Consensus size: 48
93091409 AGGGTAAGGT
* * *
93091419 GCCGATGCCATGTCCTAGACACGGTCTTATACTGGCTCATATCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* * *
93091466 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCGAA
* * * *
93091514 GCCTATG-CATGTCCCAGACAT-GTCTTACACTGGCTTATGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* * * *
93091560 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTTGTCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* * *
93091605 TGCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATAATGT-G--
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCAT-ATCTCGAA
93091654 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
93091689 TACACACGAA
Statistics
Matches: 186, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
44 2 0.01
45 2 0.01
46 75 0.40
47 79 0.42
48 23 0.12
50 3 0.02
51 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
Found at i:93091679 original size:140 final size:141
Alignment explanation
Indices: 93091419--93091690 Score: 372
Period size: 140 Copynumber: 1.9 Consensus size: 141
93091409 AGGGTAAGGT
* * * * * *
93091419 GCCGATGCCATGTCCTAGACACGGTCTTATACTGGCTCATATCTCAAGTCGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAAGCCGATGCCATATCCCAG
* *
93091484 ACATGGTCTTACACTGACTATCATCTCGTAGCCTATGCATGTCCCAGACATGTCTTACACTGGCT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
93091549 TATGTCTCGAG
131 TATGTCTCGAG
* * *
93091560 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAGCCCTTGTCTCAATGCCGATGCCATATCCCA
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAA-GCCGATGCCATATCCCA
* *
93091623 GACATGGTCTTACACT-AGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACTG
65 GACATGGTCTTACACTGA-CTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTG
93091686 GCTTA
128 GCTTA
93091691 CACACGAATG
Statistics
Matches: 115, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
139 20 0.17
140 87 0.76
141 8 0.07
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAAGCCGATGCCATATCCCAG
ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
TATGTCTCGAG
Found at i:93102273 original size:33 final size:33
Alignment explanation
Indices: 93102225--93102300 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
93102215 TATATGTATA
* * *
93102225 AGTGTAGGACCATAACT-GGTCTATGGCATTCTG
1 AGTGTAAGACGATAACTAGGT-TATGGCATTATG
93102258 A-TGATAAGACGATAACTAGGTTATGGCATTATG
1 AGTG-TAAGACGATAACTAGGTTATGGCATTATG
93102291 AGTGTAAGAC
1 AGTGTAAGAC
93102301 CATGGCAAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 2 0.05
33 30 0.81
34 5 0.14
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (33 bp):
AGTGTAAGACGATAACTAGGTTATGGCATTATG
Found at i:93104430 original size:40 final size:40
Alignment explanation
Indices: 93104385--93104514 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
93104375 CGGAATACAA
93104385 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
93104425 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
93104465 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
93104505 CCGGATATAA
1 CCGGATATAA
93104515 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:93104529 original size:40 final size:40
Alignment explanation
Indices: 93104385--93104548 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
93104375 CGGAATACAA
* **
93104385 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
93104425 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
93104465 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
93104505 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
93104545 CCGG
1 CCGG
93104549 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:93112485 original size:40 final size:40
Alignment explanation
Indices: 93112440--93112569 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
93112430 CGGAATACAA
93112440 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
93112480 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
93112520 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
93112560 CCGGATATAA
1 CCGGATATAA
93112570 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:93112584 original size:40 final size:40
Alignment explanation
Indices: 93112440--93112603 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
93112430 CGGAATACAA
* **
93112440 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
93112480 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
93112520 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
93112560 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
93112600 CCGG
1 CCGG
93112604 TATCATTCAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:93115304 original size:71 final size:71
Alignment explanation
Indices: 93115220--93115383 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
93115210 CGATTTGTCT
93115220 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
93115285 CTTTCA
66 CTTTCA
93115291 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
93115356 CTTTCA
66 CTTTCA
93115362 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
93115384 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:93115421 original size:71 final size:70
Alignment explanation
Indices: 93115220--93115417 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
93115210 CGATTTGTCT
* * * *
93115220 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
93115285 CTTTCA
65 CTTTCA
* * * *
93115291 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
93115356 CTTTCA
65 CTTTCA
* *
93115362 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
93115418 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:93124067 original size:16 final size:16
Alignment explanation
Indices: 93124046--93124091 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
93124036 TTATATTTAA
93124046 TAATATAATAAATTAT
1 TAATATAATAAATTAT
93124062 TAATATAAT---TTAT
1 TAATATAATAAATTAT
* *
93124075 TATTTTAATAAATTAT
1 TAATATAATAAATTAT
93124091 T
1 T
93124092 TATTATTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 11 0.44
16 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATATAATAAATTAT
Found at i:93124402 original size:10 final size:10
Alignment explanation
Indices: 93124389--93124535 Score: 55
Period size: 10 Copynumber: 15.4 Consensus size: 10
93124379 GACATGTGAA
93124389 AAAAAATTAT
1 AAAAAATTAT
93124399 AAAAAA-TA-
1 AAAAAATTAT
93124407 AAAATAA--AT
1 AAAA-AATTAT
*
93124416 -AAAAGTTAT
1 AAAAAATTAT
*
93124425 -AAATATTAT
1 AAAAAATTAT
* *
93124434 TAAATATTAAT
1 AAAAAATT-AT
93124445 AAAAAA-TATT
1 AAAAAATTA-T
* *
93124455 TAAAAATTAG
1 AAAAAATTAT
93124465 AAAAAATTAT
1 AAAAAATTAT
* **
93124475 -AAATATCGT
1 AAAAAATTAT
93124484 AAAAAA-TAT
1 AAAAAATTAT
*
93124493 AAAAAA--CT
1 AAAAAATTAT
* *
93124501 GAAAAATTTT
1 AAAAAATTAT
*
93124511 ATAAAAATCAT
1 A-AAAAATTAT
*
93124522 AAAAAAATAT
1 AAAAAATTAT
93124532 AAAA
1 AAAA
93124536 TGCATAAAAA
Statistics
Matches: 102, Mismatches: 23, Indels: 24
0.68 0.15 0.16
Matches are distributed among these distances:
7 1 0.01
8 14 0.14
9 27 0.26
10 44 0.43
11 16 0.16
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:93124477 original size:19 final size:19
Alignment explanation
Indices: 93124389--93124535 Score: 56
Period size: 19 Copynumber: 7.7 Consensus size: 19
93124379 GACATGTGAA
*
93124389 AAAAAATTATAAAAAATA-
1 AAAAAATTATAAAAATTAG
*
93124407 AAAATAA--ATAAAAGTTA-
1 AAAA-AATTATAAAAATTAG
* * * *
93124424 TAAATATTATTAAATATTAAT
1 AAAAAATTA-TAAAAATT-AG
*
93124445 AAAAAATATTTAAAAATTAG
1 AAAAAAT-TATAAAAATTAG
* *
93124465 AAAAAATTATAAATA-TCG
1 AAAAAATTATAAAAATTAG
*
93124483 TAAAAAA-TATAAAAAACT-G
1 -AAAAAATTAT-AAAAATTAG
* * *
93124502 AAAAATTTTATAAAAATCAT
1 AAAAA-ATTATAAAAATTAG
*
93124522 AAAAAAATATAAAA
1 AAAAAATTATAAAA
93124536 TGCATAAAAA
Statistics
Matches: 95, Mismatches: 21, Indels: 25
0.67 0.15 0.18
Matches are distributed among these distances:
16 1 0.01
17 11 0.12
18 15 0.16
19 37 0.39
20 18 0.19
21 12 0.13
22 1 0.01
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (19 bp):
AAAAAATTATAAAAATTAG
Found at i:93124478 original size:40 final size:37
Alignment explanation
Indices: 93124388--93124497 Score: 91
Period size: 40 Copynumber: 2.9 Consensus size: 37
93124378 TGACATGTGA
*
93124388 AAAAAAATTATAAA-A-AATAAAAATAAATAAAAGTT
1 AAAAAAATTATAAATATAATAAAAATAAATAAAAATT
* * **
93124423 ATAAATATTATTAAATATTAATAAAAAATATTTAAAAATT
1 AAAAAAATTA-TAAATA-TAAT-AAAAATAAATAAAAATT
** *
93124463 AGAAAAAATTATAAATATCGTAAAAA-ATATAAAAA
1 A-AAAAAATTATAAATATAATAAAAATAAATAAAAA
93124498 ACTGAAAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
35 8 0.14
36 4 0.07
37 9 0.15
38 5 0.08
39 5 0.08
40 21 0.36
41 7 0.12
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (37 bp):
AAAAAAATTATAAATATAATAAAAATAAATAAAAATT
Found at i:93124487 original size:39 final size:39
Alignment explanation
Indices: 93124425--93124535 Score: 102
Period size: 38 Copynumber: 2.8 Consensus size: 39
93124415 TAAAAGTTAT
* * *
93124425 AAATATTATTAAATATTAATAAAAAATATTTAAAAATTAGAA
1 AAATATTA-TAAA-AATCATAAAAAATATTTAAAAACT-GAA
* * *
93124467 AAA-ATTATAAATATCGTAAAAAATA-TAAAAAACTGAA
1 AAATATTATAAAAATCATAAAAAATATTTAAAAACTGAA
* *
93124504 AAATTTTATAAAAATCATAAAAAA-ATATAAAA
1 AAATATTATAAAAATCATAAAAAATATTTAAAA
93124536 TGCATAAAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
37 7 0.12
38 28 0.50
39 10 0.18
40 4 0.07
41 4 0.07
42 3 0.05
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (39 bp):
AAATATTATAAAAATCATAAAAAATATTTAAAAACTGAA
Found at i:93124498 original size:38 final size:38
Alignment explanation
Indices: 93124388--93124535 Score: 108
Period size: 39 Copynumber: 3.9 Consensus size: 38
93124378 TGACATGTGA
* * *
93124388 AAAAAAATTATAAAAA--AT-AAAAATA-AATAAAAGTT
1 AAAAATATTATAAAAATCATAAAAAATATAA-AAAACTG
* * * * *
93124423 ATAAATATTATTAAATATTAATAAAAAATATTTAAAAATTAG
1 AAAAATATTA-TAAA-AATCATAAAAAATA-TAAAAAACT-G
* *
93124465 AAAAA-ATTATAAATATCGTAAAAAATATAAAAAACTG
1 AAAAATATTATAAAAATCATAAAAAATATAAAAAACTG
*
93124502 AAAAATTTTATAAAAATCATAAAAAAATATAAAA
1 AAAAATATTATAAAAATCAT-AAAAAATATAAAA
93124536 TGCATAAAAA
Statistics
Matches: 87, Mismatches: 16, Indels: 16
0.73 0.13 0.13
Matches are distributed among these distances:
35 8 0.09
36 4 0.05
37 7 0.08
38 18 0.21
39 25 0.29
40 11 0.13
41 9 0.10
42 5 0.06
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (38 bp):
AAAAATATTATAAAAATCATAAAAAATATAAAAAACTG
Found at i:93124535 original size:29 final size:28
Alignment explanation
Indices: 93124442--93124536 Score: 74
Period size: 29 Copynumber: 3.4 Consensus size: 28
93124432 ATTAAATATT
*
93124442 AATAAAAAATATT-TAAAAAT-TAGAAAA
1 AATATAAAATATTATAAAAATATA-AAAA
93124469 AAT-TATAAATATCGTA-AAAAATATAAAAA
1 AATATA-AAATAT--TATAAAAATATAAAAA
* *
93124498 ACTGA-AAAATTTTATAAAAATCATAAAAA
1 AAT-ATAAAATATTATAAAAAT-ATAAAAA
93124527 AATATAAAAT
1 AATATAAAAT
93124537 GCATAAAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 18
0.71 0.05 0.24
Matches are distributed among these distances:
26 1 0.02
27 11 0.20
28 7 0.13
29 32 0.59
30 3 0.06
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.27
Consensus pattern (28 bp):
AATATAAAATATTATAAAAATATAAAAA
Found at i:93124664 original size:10 final size:9
Alignment explanation
Indices: 93124649--93124698 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
93124639 GATATGTGGC
93124649 AAAAAATGAT
1 AAAAAAT-AT
93124659 AAAAAATA-
1 AAAAAATAT
93124667 AAAATAA-AT
1 AAAA-AATAT
*
93124676 AAAAATTAT
1 AAAAAATAT
93124685 AAAAAATTAT
1 AAAAAA-TAT
93124695 AAAA
1 AAAA
93124699 TATTTCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 6 0.18
9 14 0.41
10 14 0.41
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (9 bp):
AAAAAATAT
Found at i:93124769 original size:9 final size:9
Alignment explanation
Indices: 93124719--93124771 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
93124709 GGTACAATAG
93124719 TTTTTATAAT
1 TTTTTAT-AT
*
93124729 TGTTTTAATAA
1 T-TTTT-ATAT
93124740 TTTTTATAT
1 TTTTTATAT
*
93124749 TTCTTTACAT
1 TT-TTTATAT
93124759 TTTTTATAT
1 TTTTTATAT
93124768 TTTT
1 TTTT
93124772 CTTACGACTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
9 15 0.42
10 13 0.36
11 6 0.17
12 2 0.06
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.70
Consensus pattern (9 bp):
TTTTTATAT
Found at i:93124802 original size:10 final size:10
Alignment explanation
Indices: 93124789--93124890 Score: 63
Period size: 10 Copynumber: 10.4 Consensus size: 10
93124779 CTTTATAAAA
93124789 TTTTATAATTT
1 TTTTATAA-TT
* *
93124800 TTTTCTATATA
1 TTTTATA-ATT
93124811 TTTTATAATT
1 TTTTATAATT
*
93124821 TTTTACAATT
1 TTTTATAATT
*
93124831 TTTTCTAA-T
1 TTTTATAATT
93124840 TTTTAT-ATT
1 TTTTATAATT
93124849 TTATTA-AA--
1 TT-TTATAATT
*
93124857 TTTAATAA-T
1 TTTTATAATT
*
93124866 TTTTATTATTT
1 TTTTA-TAATT
*
93124877 TTTTATCATT
1 TTTTATAATT
93124887 TTTT
1 TTTT
93124891 GCCACATGTC
Statistics
Matches: 70, Mismatches: 13, Indels: 17
0.70 0.13 0.17
Matches are distributed among these distances:
7 2 0.03
8 5 0.07
9 13 0.19
10 30 0.43
11 19 0.27
12 1 0.01
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTATAATT
Found at i:93124816 original size:32 final size:29
Alignment explanation
Indices: 93124780--93124846 Score: 80
Period size: 32 Copynumber: 2.2 Consensus size: 29
93124770 TTCTTACGAC
*
93124780 TTTATAAAATTTTATAATTTTTTTCTATATAT
1 TTTATAAAATTTTACAA-TTTTTTCTA-AT-T
**
93124812 TTTATAATTTTTTACAATTTTTTCTAATT
1 TTTATAAAATTTTACAATTTTTTCTAATT
93124841 TTTATA
1 TTTATA
93124847 TTTTATTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 7 0.22
30 2 0.06
31 9 0.28
32 14 0.44
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (29 bp):
TTTATAAAATTTTACAATTTTTTCTAATT
Found at i:93124823 original size:9 final size:9
Alignment explanation
Indices: 93124811--93124878 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
93124801 TTTCTATATA
93124811 TTTTATAATT
1 TTTTATAA-T
*
93124821 TTTTACAATT
1 TTTTATAA-T
*
93124831 TTTTCTAAT
1 TTTTATAAT
93124840 TTTTAT-A-
1 TTTTATAAT
*
93124847 TTTTATTAAA
1 TTTTA-TAAT
*
93124857 TTTAATAAT
1 TTTTATAAT
*
93124866 TTTTATTAT
1 TTTTATAAT
93124875 TTTT
1 TTTT
93124879 TTATCATTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
7 5 0.11
8 2 0.04
9 21 0.45
10 19 0.40
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTATAAT
Found at i:93124834 original size:20 final size:22
Alignment explanation
Indices: 93124788--93124843 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
93124778 ACTTTATAAA
*
93124788 ATTTTATAATTTTTTTCTATAT
1 ATTTTATAATTTTTTACTATAT
93124810 ATTTTATAATTTTTTAC-A-AT
1 ATTTTATAATTTTTTACTATAT
* *
93124830 TTTTTCTAATTTTT
1 ATTTTATAATTTTT
93124844 ATATTTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 14 0.45
21 1 0.03
22 16 0.52
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (22 bp):
ATTTTATAATTTTTTACTATAT
Found at i:93135059 original size:42 final size:42
Alignment explanation
Indices: 93134974--93135106 Score: 126
Period size: 42 Copynumber: 3.2 Consensus size: 42
93134964 CATGTCGGTG
* * * *
93134974 TCGATGCCATGTCCCAGGCATGGTCTTATACGGGAA-CTTATA
1 TCGATGCCATGTCCCAGACATGGTCTTACAC-GAAATCTCATA
*
93135016 TCGATGCCTTGTCCCAGACATGGTCTTACACGAAATCTCATA
1 TCGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATA
* * * * * *
93135058 TCAACGCCATATCCTAGATATGGTCTTACATGAAAT-TACATA
1 TCGATGCCATGTCCCAGACATGGTCTTACACGAAATCT-CATA
*
93135100 CCGATGC
1 TCGATGC
93135107 TGATGCCATA
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 4 0.05
42 70 0.95
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (42 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATA
Found at i:93135147 original size:48 final size:49
Alignment explanation
Indices: 93135063--93135188 Score: 130
Period size: 48 Copynumber: 2.6 Consensus size: 49
93135053 TCATATCAAC
* ** * * * *
93135063 GCCATATCCTAGATATGGTCTTACA-TGAAATTACATACCGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAACGCCGAT
* *
93135111 GCCATATCCCAAATATGGTCTTACACTGGCA-CACATATCAACGCCGAT
1 GCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAACGCCGAT
* * *
93135159 ACCATGTCCCAGACATGGTCTTACACTGGC
1 GCCATATCCCAGATATGGTCTTACACTGGC
93135189 TCTCATTAGT
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 61 0.95
49 3 0.05
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
GCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAACGCCGAT
Found at i:93139167 original size:18 final size:17
Alignment explanation
Indices: 93139103--93139174 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 17
93139093 TCTAAATATG
93139103 TTTTATTAATTTTATAAA
1 TTTTATT-ATTTTATAAA
*
93139121 TTTT-TTATAATTTATTAGA
1 TTTTATTAT--TTTA-TAAA
*
93139140 TTTTTTTATTTTATAATA
1 TTTTATTATTTTATAA-A
93139158 TTTTATTATTTTCATAA
1 TTTTATTATTTT-ATAA
93139175 GTTGATACCA
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
16 2 0.04
17 4 0.09
18 24 0.53
19 11 0.24
20 4 0.09
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (17 bp):
TTTTATTATTTTATAAA
Found at i:93139273 original size:22 final size:22
Alignment explanation
Indices: 93139226--93139281 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
93139216 TTATAATTTT
* *
93139226 TAACTTTTTTTGATAATTTTTTA
1 TAACTTTTTTTGAT-ATGTTTCA
93139249 TAACTTTTTTCTGAT-TGTTTCA
1 TAACTTTTTT-TGATATGTTTCA
93139271 TAA-TTTTTTTG
1 TAACTTTTTTTG
93139282 TTATTTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 2 0.07
21 6 0.20
22 8 0.27
23 10 0.33
24 4 0.13
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (22 bp):
TAACTTTTTTTGATATGTTTCA
Found at i:93140387 original size:15 final size:15
Alignment explanation
Indices: 93140367--93140396 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
93140357 CATATGGAGT
93140367 TTTCAATTTTCATTA
1 TTTCAATTTTCATTA
93140382 TTTCAATTTTCATTA
1 TTTCAATTTTCATTA
93140397 CATATATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTCAATTTTCATTA
Found at i:93142081 original size:6 final size:6
Alignment explanation
Indices: 93142072--93142108 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
93142062 CATGTTCTTT
* *
93142072 CTTGTT CTTGTT CTTGTC CTTGTC CTTGTC CTTGTC C
1 CTTGTC CTTGTC CTTGTC CTTGTC CTTGTC CTTGTC C
93142109 ATCTCACTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.30, G:0.16, T:0.54
Consensus pattern (6 bp):
CTTGTC
Found at i:93142099 original size:18 final size:18
Alignment explanation
Indices: 93142064--93142108 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
93142054 TCAAACTACA
*
93142064 TGTTCTT-T-CTTGTTCT
1 TGTTCTTGTCCTTGTCCT
93142080 TGTTCTTGTCCTTGTCCT
1 TGTTCTTGTCCTTGTCCT
*
93142098 TGTCCTTGTCC
1 TGTTCTTGTCC
93142109 ATCTCACTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 7 0.28
17 1 0.04
18 17 0.68
ACGTcount: A:0.00, C:0.27, G:0.16, T:0.58
Consensus pattern (18 bp):
TGTTCTTGTCCTTGTCCT
Found at i:93142719 original size:11 final size:11
Alignment explanation
Indices: 93142703--93142728 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
93142693 ATTTAAGGAT
93142703 AAAAAAAAATA
1 AAAAAAAAATA
93142714 AAAAAAAAATA
1 AAAAAAAAATA
93142725 AAAA
1 AAAA
93142729 GGTATAGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAAATA
Found at i:93148058 original size:27 final size:27
Alignment explanation
Indices: 93147942--93148070 Score: 152
Period size: 27 Copynumber: 4.8 Consensus size: 27
93147932 TACATCATGT
* * * * *
93147942 AGGGCTAAATAATCATCTTATCACCTA
1 AGGGCAAAATAGTCATTTTACCACATA
*
93147969 AGGGCAAATTAGTCATTTTACCACATA
1 AGGGCAAAATAGTCATTTTACCACATA
*
93147996 AGGGCAAAACT-GTCATTTTACCACATG
1 AGGGCAAAA-TAGTCATTTTACCACATA
* * *
93148023 AGGGCAAAATAGTTAGTTTATCACATA
1 AGGGCAAAATAGTCATTTTACCACATA
93148050 AGGGCAAAATAGTCATTTTAC
1 AGGGCAAAATAGTCATTTTAC
93148071 TTTACAGGGG
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 83 0.98
28 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (27 bp):
AGGGCAAAATAGTCATTTTACCACATA
Found at i:93148107 original size:27 final size:26
Alignment explanation
Indices: 93148077--93148176 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 26
93148067 TTACTTTACA
* *
93148077 GGGGTATTACAGTCATTTTATCCTACT
1 GGGGTATTACGGTCATTTTACCCTA-T
93148104 GGGGTATTTA-GGTCATTTTACCCTAT
1 GGGGTA-TTACGGTCATTTTACCCTAT
* *
93148130 GAGGGTATTTCGGTTATTTTACCCTAT
1 G-GGGTATTACGGTCATTTTACCCTAT
*
93148157 GGGGGTATTTCGGTCATTTT
1 -GGGGTATTACGGTCATTTT
93148177 CAAGTAAATA
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
26 4 0.06
27 56 0.88
28 4 0.06
ACGTcount: A:0.18, C:0.15, G:0.24, T:0.43
Consensus pattern (26 bp):
GGGGTATTACGGTCATTTTACCCTAT
Found at i:93148119 original size:54 final size:54
Alignment explanation
Indices: 93148061--93148176 Score: 128
Period size: 54 Copynumber: 2.1 Consensus size: 54
93148051 GGGCAAAATA
** *
93148061 GTCATTTTACTTTACAG-GGGTATTACAGTCATTTTATCCTACT-GGGGTATTTAG
1 GTCATTTTACCCTA-AGAGGGTATTACAGTCATTTTACCCTA-TGGGGGTATTTAG
* * * * *
93148115 GTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAAGAGGGTATTACAGTCATTTTACCCTATGGGGGTATTTAG
93148169 GTCATTTT
1 GTCATTTT
93148177 CAAGTAAATA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
53 2 0.04
54 50 0.96
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.44
Consensus pattern (54 bp):
GTCATTTTACCCTAAGAGGGTATTACAGTCATTTTACCCTATGGGGGTATTTAG
Found at i:93148601 original size:16 final size:17
Alignment explanation
Indices: 93148575--93148611 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
93148565 CGACAACCCA
*
93148575 CTTTCCGGCTTTTTAGC
1 CTTTCCGGCTTTTCAGC
93148592 CTTT-CGGCTTTTCAGC
1 CTTTCCGGCTTTTCAGC
93148608 CTTT
1 CTTT
93148612 GCAGTTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.05, C:0.30, G:0.16, T:0.49
Consensus pattern (17 bp):
CTTTCCGGCTTTTCAGC
Found at i:93152272 original size:2 final size:2
Alignment explanation
Indices: 93152265--93152310 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
93152255 ATGCTATACG
93152265 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
93152307 TA TA
1 TA TA
93152311 ATGATAGTGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:93160080 original size:21 final size:21
Alignment explanation
Indices: 93160054--93160104 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
93160044 TGGGTAGTAC
93160054 GAAAATGTACAATGATTTAAA
1 GAAAATGTACAATGATTTAAA
93160075 GAAAATGTACAATGATTTAAA
1 GAAAATGTACAATGATTTAAA
93160096 GAAAATGTA
1 GAAAATGTA
93160105 TTGGTGGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.53, C:0.04, G:0.16, T:0.27
Consensus pattern (21 bp):
GAAAATGTACAATGATTTAAA
Found at i:93164559 original size:2 final size:2
Alignment explanation
Indices: 93164552--93164584 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
93164542 ATGGTGTACG
93164552 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
93164585 GATAATTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:93170285 original size:46 final size:46
Alignment explanation
Indices: 93170235--93170407 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
93170225 TGGTTGAGCA
*
93170235 TCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
93170281 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
93170326 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
93170374 TCTGAGCTCATTGAGTTGAGTACGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
93170408 GGGGTGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.54
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93170391 original size:93 final size:93
Alignment explanation
Indices: 93170232--93170402 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
93170222 GGATGGTTGA
* *
93170232 GCATCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
*
93170297 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTACGAGTTCGTGAGATGTAACTAG
* * * *
93170325 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGTCTGAGCTCATTGAGT
1 GCATCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
93170390 TGAGTACGAGTTC
66 TGAGTACGAGTTC
93170403 ACTTAGGGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTACGAGTTCGTGAGATGTAACTAG
Found at i:93178666 original size:40 final size:40
Alignment explanation
Indices: 93178620--93178781 Score: 247
Period size: 40 Copynumber: 4.0 Consensus size: 40
93178610 TCGGATTTAA
*
93178620 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
** *
93178660 CCGGATATAGTAGTTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
93178700 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
93178740 CCGGA-ATTAGTAACTCGCACAAATTCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
93178780 CC
1 CC
93178782 TGTTATCATC
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
39 2 0.02
40 110 0.98
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:93186680 original size:40 final size:40
Alignment explanation
Indices: 93186617--93186778 Score: 240
Period size: 40 Copynumber: 4.1 Consensus size: 40
93186607 TGGGATTTAA
* *
93186617 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCACACAAATGCCTTCGGGACTTAGC
**
93186657 CCGGATATAGTAGTTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
*
93186697 CCAGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
93186737 CCGGA-ATTAGTAACTCACACAAATGCCTTC-GGACTTAGC
1 CCGGATA-TAGTAACTCACACAAATGCCTTCGGGACTTAGC
93186776 CCG
1 CCG
93186779 TTATCATCCG
Statistics
Matches: 112, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 14 0.12
40 98 0.88
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
Found at i:93197139 original size:53 final size:53
Alignment explanation
Indices: 93197082--93197187 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
93197072 AATGTTCTTC
93197082 GTATTTTTGAAATCTCAATAGCTTACTCTCTCTATTTCTACCCATATTCCATG
1 GTATTTTTGAAATCTCAATAGCTTACTCTCTCTATTTCTACCCATATTCCATG
*
93197135 GTATTTTTGAAATCTCAATAGCTTACTCTCTCTATTTCTACCCATATTTCATG
1 GTATTTTTGAAATCTCAATAGCTTACTCTCTCTATTTCTACCCATATTCCATG
93197188 CTAGGGTTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.25, C:0.24, G:0.08, T:0.44
Consensus pattern (53 bp):
GTATTTTTGAAATCTCAATAGCTTACTCTCTCTATTTCTACCCATATTCCATG
Found at i:93203308 original size:40 final size:40
Alignment explanation
Indices: 93203253--93203462 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
93203243 AACATTGGAA
93203253 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
93203293 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
93203333 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
93203373 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
93203412 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
93203453 CTATATCCGG
1 ATATATCCGG
93203463 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:93218324 original size:40 final size:40
Alignment explanation
Indices: 93218279--93218445 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
93218269 CGGAATATAA
*
93218279 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
93218319 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
93218359 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
93218399 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
93218438 CCGGATAT
1 CCGGATAT
93218446 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:93218429 original size:80 final size:79
Alignment explanation
Indices: 93218295--93218445 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
93218285 TTAATCACGT
*
93218295 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
93218360 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
93218375 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
93218438 CCGGATAT
64 CCGGATAT
93218446 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:93232903 original size:308 final size:309
Alignment explanation
Indices: 93232345--93232964 Score: 1109
Period size: 308 Copynumber: 2.0 Consensus size: 309
93232335 TGTATGGTAG
*
93232345 TAAACATATGGGCAAAGACACGACTGTGTGTCTCAACCGTGTGGAGGACACGGCCTAATACACGG
1 TAAACATATGGGCAAAGACACGACTGTGTGTCTCAACCGTGTGGAGGACACGGCCTAACACACGG
93232410 GCGTGTGCCTTGGCTGTGTGCCTCAAAATGAATGATGATGTCATAAACAGAATGTCCGAGTTTTT
66 GCGTGTGCCTTGGCTGTGTGCCTCAAAATGAATGATGATGTCATAAACAGAATGTCCGAGTTTTT
*
93232475 GGACATGGGCGATGACATGGGCGTGTCTAGTCCTTGTGAGGGACACGGGCTAGAGACACGAGTGT
131 GGACATGGGCGATGACATGGGCGTGTCTAGGCCTTGTGAGGGACACGGGCTAGAGACACGAGTGT
* * * * *
93232540 GTGTTTGGTCATGTGAAAACCCTTGTAGGCTCAGAATGAAAAATAAATTCCAATAATTCAACATG
196 GTGTTCGGACATGTGAAAACCCCTGTAGGATCAGAATGAAAAATAAATTCCAATAATTCAACACG
*
93232605 GGTAAGAGATACGAGTGTGTGCATTGCCTCTACA-GGGCGTGTGAGGCT
261 GGTAAGAGATACGAGTGTGTGCATTGCCTCTACACAGGCGTGTGAGGCT
* * *
93232653 TAAACATATGGGTAGAGACACGACTGTGTGTCTCAACCGTGTGGAGGACACGGCCTAGCACACGG
1 TAAACATATGGGCAAAGACACGACTGTGTGTCTCAACCGTGTGGAGGACACGGCCTAACACACGG
93232718 GCGTGTGCCTTGGCTGTGTGCCTCAAAATGAATGATGATGTCATAAACAGAATGTCCGAGTTTTT
66 GCGTGTGCCTTGGCTGTGTGCCTCAAAATGAATGATGATGTCATAAACAGAATGTCCGAGTTTTT
*
93232783 GGACATGGGCGATGACATGGGCGTGTCTAGGCCTTGTGAGGGACACGGGTTAGAGACACGAGTGT
131 GGACATGGGCGATGACATGGGCGTGTCTAGGCCTTGTGAGGGACACGGGCTAGAGACACGAGTGT
93232848 GTGTTCGGACATGTGAAAACCCCTGTAGGATC-GAAATGAAAAATAAATTCCAATAATTCAACAC
196 GTGTTCGGACATGTGAAAACCCCTGTAGGATCAG-AATGAAAAATAAATTCCAATAATTCAACAC
93232912 GGGTAAGAGATACGAGTGTGTGCATTGCCTCTACACAGGCGTGTGAGGCT
260 GGGTAAGAGATACGAGTGTGTGCATTGCCTCTACACAGGCGTGTGAGGCT
93232962 TAA
1 TAA
93232965 CCCTAGGAAT
Statistics
Matches: 298, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
307 1 0.00
308 281 0.94
309 16 0.05
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (309 bp):
TAAACATATGGGCAAAGACACGACTGTGTGTCTCAACCGTGTGGAGGACACGGCCTAACACACGG
GCGTGTGCCTTGGCTGTGTGCCTCAAAATGAATGATGATGTCATAAACAGAATGTCCGAGTTTTT
GGACATGGGCGATGACATGGGCGTGTCTAGGCCTTGTGAGGGACACGGGCTAGAGACACGAGTGT
GTGTTCGGACATGTGAAAACCCCTGTAGGATCAGAATGAAAAATAAATTCCAATAATTCAACACG
GGTAAGAGATACGAGTGTGTGCATTGCCTCTACACAGGCGTGTGAGGCT
Found at i:93236245 original size:93 final size:93
Alignment explanation
Indices: 93236133--93236303 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
93236123 GCCCATAAGT
* *
93236133 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93236198 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
93236226 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93236291 CGAGTTCGGATGC
66 CGAGTTCGGATGC
93236304 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:93236300 original size:46 final size:46
Alignment explanation
Indices: 93236125--93236300 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
93236115 TGTAACCCGC
* * *
93236125 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
93236171 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
93236221 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
93236264 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
93236301 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:93238705 original size:30 final size:30
Alignment explanation
Indices: 93238661--93238749 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
93238651 CAAAGATAAC
93238661 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
93238690 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
93238720 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
93238750 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:93238709 original size:15 final size:15
Alignment explanation
Indices: 93238661--93238740 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
93238651 CAAAGATAAC
*
93238661 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
93238675 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
93238690 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
93238705 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
93238720 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
93238735 AAGAAA
1 AAGAAA
93238741 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:93238749 original size:15 final size:15
Alignment explanation
Indices: 93238672--93238749 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
93238662 AGAAAACCGA
93238672 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
93238687 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
93238701 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
93238716 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
93238732 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
93238747 ATA
1 ATA
93238750 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:93241814 original size:93 final size:93
Alignment explanation
Indices: 93241702--93241872 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
93241692 GCCCATAAGT
* *
93241702 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93241767 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
93241795 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93241860 CGAGTTCGGATGC
66 CGAGTTCGGATGC
93241873 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:93241869 original size:46 final size:46
Alignment explanation
Indices: 93241694--93241869 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
93241684 TGTAACCCGC
* * *
93241694 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
93241740 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
93241790 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
93241833 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
93241870 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:93247244 original size:39 final size:39
Alignment explanation
Indices: 93247163--93247325 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
93247153 TATGGTAACC
* *
93247163 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
93247203 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* * *
93247242 CGCACCATTGCCTTCGGGCTTAGCCGGGACATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
93247281 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
93247320 CGCACA
1 CGCACA
93247326 TTCATACACA
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 93 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:93256398 original size:47 final size:47
Alignment explanation
Indices: 93256344--93256537 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
93256334 TTAGGATTTT
** * *
93256344 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
93256391 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
93256438 ATGTGATGAATGTGAGCATACATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
93256485 ATATGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATAGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
93256532 ATGTGA
1 ATGTGA
93256538 AATATGTATG
Statistics
Matches: 128, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 128 1.00
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:93256444 original size:22 final size:22
Alignment explanation
Indices: 93256373--93256444 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
93256363 GTATATATGA
93256373 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
93256395 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
93256420 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
93256442 GAT
1 GAT
93256445 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:93256664 original size:98 final size:96
Alignment explanation
Indices: 93256508--93256691 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
93256498 GAACATGCAT
* *
93256508 ATATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAA
93256573 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
93256604 ATATGTGGTAAAGCCGAAT-GGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATAGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
93256668 CAAATGGCTAGTGTGAAATATGTA
63 CAAATGGCTAATGTGAAATATGTA
93256692 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 2 0.02
96 25 0.31
97 2 0.02
98 52 0.64
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:93256707 original size:50 final size:48
Alignment explanation
Indices: 93256507--93256691 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
93256497 TGAACATGCA
*
93256507 TATATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
93256555 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
93256603 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
93256653 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
93256692 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.01
48 80 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:93256946 original size:37 final size:37
Alignment explanation
Indices: 93256838--93256946 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
93256828 GGAAATATAT
*
93256838 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
93256875 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
93256912 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
93256947 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:93258453 original size:40 final size:40
Alignment explanation
Indices: 93258210--93258441 Score: 374
Period size: 40 Copynumber: 5.8 Consensus size: 40
93258200 GAGAATTGAG
*
93258210 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
93258250 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
93258290 AGTGATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
93258330 AGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
93258370 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
93258410 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
93258442 ATCATGCTGG
Statistics
Matches: 177, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:93262458 original size:47 final size:47
Alignment explanation
Indices: 93262404--93262597 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
93262394 TTAGGATTTT
** * *
93262404 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
93262451 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
93262498 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
93262545 ATGTGGTGAATATGAACTTGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
93262592 ATGTGA
1 ATGTGA
93262598 AATATGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:93262504 original size:22 final size:22
Alignment explanation
Indices: 93262433--93262504 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
93262423 GTATATATGA
93262433 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
93262455 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
93262480 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
93262502 GAT
1 GAT
93262505 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:93262553 original size:25 final size:25
Alignment explanation
Indices: 93262478--93262553 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
93262468 ATGCATATAT
93262478 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
93262503 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
93262525 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
93262550 GTGA
1 GTGA
93262554 ATATGAACTT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:93262730 original size:98 final size:96
Alignment explanation
Indices: 93262568--93262751 Score: 307
Period size: 98 Copynumber: 1.9 Consensus size: 96
93262558 GAACTTGCAT
*
93262568 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
93262633 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
93262664 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAACGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
93262728 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
93262752 GGCGATGTGC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
97 2 0.02
98 52 0.63
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:93262767 original size:50 final size:48
Alignment explanation
Indices: 93262567--93262751 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
93262557 TGAACTTGCA
93262567 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
93262615 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
93262663 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
93262713 TATATGTGGTAACGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
93262752 GGCGATGTGC
Statistics
Matches: 127, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
47 1 0.01
48 81 0.64
49 4 0.03
50 40 0.31
51 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:93262948 original size:37 final size:37
Alignment explanation
Indices: 93262898--93263005 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
93262888 GGAAATATAT
93262898 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
93262935 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
93262972 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
93263006 TCGTCTGAGC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:93269914 original size:170 final size:170
Alignment explanation
Indices: 93269632--93269961 Score: 606
Period size: 170 Copynumber: 1.9 Consensus size: 170
93269622 GTCAAGGTGT
93269632 ACTAATCTATATTCATGGATGAACATATTTATTAAACAGATTCCATGTTCATATATCATCAACTT
1 ACTAATCTATATTCATGGATGAACATATTTATTAAACAGATTCCATGTTCATATATCATCAACTT
* *
93269697 GTATTTCGATAAATCACGTATCATAATTTCATGTATTTCAGGTAGACACTTGTAATAATTCATTT
66 ATATTTCCATAAATCACGTATCATAATTTCATGTATTTCAGGTAGACACTTGTAATAATTCATTT
*
93269762 CTTGTTCATATTTTCTTATGTCAGAATTTTGCCCGTTCAA
131 CTTGTTCATATTTTCTTAAGTCAGAATTTTGCCCGTTCAA
93269802 ACTAATCTATATTCATGGATGAACATATTTATTAAACAGATTCCATGTTCATATATCATCAACTT
1 ACTAATCTATATTCATGGATGAACATATTTATTAAACAGATTCCATGTTCATATATCATCAACTT
* *
93269867 ATATTTCCATAAGTCATGTATCATAATTTCATGTATTTCAGGTAGACACTTGTAATAATTCATTT
66 ATATTTCCATAAATCACGTATCATAATTTCATGTATTTCAGGTAGACACTTGTAATAATTCATTT
*
93269932 CTTGTTCATATTTTCTTAAGTTAGAATTTT
131 CTTGTTCATATTTTCTTAAGTCAGAATTTT
93269962 TCTCATTCAA
Statistics
Matches: 154, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
170 154 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (170 bp):
ACTAATCTATATTCATGGATGAACATATTTATTAAACAGATTCCATGTTCATATATCATCAACTT
ATATTTCCATAAATCACGTATCATAATTTCATGTATTTCAGGTAGACACTTGTAATAATTCATTT
CTTGTTCATATTTTCTTAAGTCAGAATTTTGCCCGTTCAA
Found at i:93270438 original size:65 final size:65
Alignment explanation
Indices: 93270290--93270444 Score: 165
Period size: 65 Copynumber: 2.4 Consensus size: 65
93270280 TCAAGTGAGC
* * * * *
93270290 CATATCAGGACGCTTATAAAGAGCTATGTTTGTGTCTGTAACATATGCAGGATCACAACCGATTG
1 CATAACAGGACGCTCACAAAGAGCTACGTTTCTGTCTGTAACATATGCAGGATCACAACCGATTG
* * * *
93270355 CATAATAGGATGCCCACAAAGATG-TACGTTTCTGTCTGTAACATATGCAATG-TCACAACCGA-
1 CATAACAGGACGCTCACAAAGA-GCTACGTTTCTGTCTGTAACATATGC-AGGATCACAACCGAT
93270417 T-
64 TG
93270418 CAATTAACAGGACGCTCACAAAGAGCT
1 C-A-TAACAGGACGCTCACAAAGAGCT
93270445 GCAGTAGTCG
Statistics
Matches: 73, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
63 1 0.01
64 3 0.04
65 66 0.90
66 3 0.04
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (65 bp):
CATAACAGGACGCTCACAAAGAGCTACGTTTCTGTCTGTAACATATGCAGGATCACAACCGATTG
Found at i:93270464 original size:20 final size:20
Alignment explanation
Indices: 93270439--93270477 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
93270429 ACGCTCACAA
93270439 AGAGCTGCAGTAGTCGTAAG
1 AGAGCTGCAGTAGTCGTAAG
93270459 AGAGCTGCAGTAGTCGTAA
1 AGAGCTGCAGTAGTCGTAA
93270478 CACATGCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.15, G:0.33, T:0.21
Consensus pattern (20 bp):
AGAGCTGCAGTAGTCGTAAG
Found at i:93274935 original size:29 final size:29
Alignment explanation
Indices: 93274902--93275032 Score: 131
Period size: 29 Copynumber: 4.5 Consensus size: 29
93274892 ATGACGAGAT
93274902 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
93274931 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
** * ***
93274960 TGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
93274989 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
93275018 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
93275033 GAAATCGAGT
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
28 2 0.02
29 81 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:93283070 original size:29 final size:29
Alignment explanation
Indices: 93283037--93283167 Score: 131
Period size: 29 Copynumber: 4.5 Consensus size: 29
93283027 GTGACGAGAT
93283037 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
93283066 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
** * ***
93283095 TGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
93283124 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
93283153 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
93283168 GAAATCGAGT
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
28 2 0.02
29 81 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:93285075 original size:39 final size:39
Alignment explanation
Indices: 93285024--93285258 Score: 380
Period size: 39 Copynumber: 6.0 Consensus size: 39
93285014 AATTATATTA
* * *
93285024 CCAGCACAAAGCCTGAGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
93285063 CCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
93285102 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * * *
93285141 CCACCACGAAGCCTGCAGAACTTTAGCCCAGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
93285180 CCAGCATGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
93285219 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
93285258 C
1 C
93285259 TAGTGTCTTG
Statistics
Matches: 179, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 179 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:93289846 original size:31 final size:31
Alignment explanation
Indices: 93289808--93289867 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
93289798 TTCATATTTC
93289808 ATATTTCATAACACTGGGCCGAAGCCTTTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTTTT
** *
93289839 ATATTTCATATTACTGGGCTGAAGCCTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTT
93289868 ACTGTAAACG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (31 bp):
ATATTTCATAACACTGGGCCGAAGCCTTTTT
Found at i:93290112 original size:24 final size:24
Alignment explanation
Indices: 93290080--93290205 Score: 198
Period size: 24 Copynumber: 5.2 Consensus size: 24
93290070 GGCCTAGACT
*
93290080 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
93290104 TTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
93290128 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
93290152 TTTTTTAATAACTGGGGCATAAGCC
1 -CTTTTAATAACTGGGGCATAAGCC
*
93290177 CTTTTAATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
93290201 CTTTT
1 CTTTT
93290206 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
24 71 0.76
25 22 0.24
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:93290158 original size:49 final size:48
Alignment explanation
Indices: 93290080--93290205 Score: 207
Period size: 49 Copynumber: 2.6 Consensus size: 48
93290070 GGCCTAGACT
*
93290080 CTTTTAATAACTGGGGCAAAAGCCTTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCTTTTTAATAACTGGGGCATAAGCC
*
93290128 CTTTTGATAACTGGGGCATAAGCCTTTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC-TTTTTAATAACTGGGGCATAAGCC
* *
93290177 CTTTTAATAACTAGGGCATAAGCCCTTTT
1 CTTTTAATAACTGGGGCATAAGCCTTTTT
93290206 GCACTTCCTC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
48 26 0.36
49 46 0.64
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (48 bp):
CTTTTAATAACTGGGGCATAAGCCTTTTTAATAACTGGGGCATAAGCC
Found at i:93290280 original size:20 final size:20
Alignment explanation
Indices: 93290255--93290301 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
93290245 TTATGAATAC
93290255 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
93290275 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
93290295 ACCATGT
1 ATCATGT
93290302 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:93290377 original size:25 final size:25
Alignment explanation
Indices: 93290338--93290385 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
93290328 ATATTTAAAC
* *
93290338 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
93290363 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
93290386 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:93297280 original size:31 final size:31
Alignment explanation
Indices: 93297242--93297301 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
93297232 TTCATATTTC
93297242 ATATTTCATAACACTGGGCCGAAGCCTTTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTTTT
**
93297273 ATATTTCATATTACTGGGCCGAAGCCTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTT
93297302 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (31 bp):
ATATTTCATAACACTGGGCCGAAGCCTTTTT
Found at i:93297569 original size:24 final size:24
Alignment explanation
Indices: 93297494--93297635 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
93297484 GCTTTATCAT
*
93297494 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
93297519 ATTACTAGGGCAAAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
93297542 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
93297566 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
93297589 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
93297613 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
93297636 GCACTTCCTC
Statistics
Matches: 104, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
23 41 0.39
24 55 0.53
25 8 0.08
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:93297577 original size:47 final size:47
Alignment explanation
Indices: 93297494--93297635 Score: 205
Period size: 47 Copynumber: 3.0 Consensus size: 47
93297484 GCTTTATCAT
* * *
93297494 ATAACTGGAGGCCT-AGCCTCTTTTAATTACTAGGGCAAAAGCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCATAAGCCTTTTA
* *
93297542 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCTTTTA
93297589 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAG-CCTTTT
93297636 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 67 0.79
48 18 0.21
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCTTTTA
Found at i:93297710 original size:20 final size:20
Alignment explanation
Indices: 93297685--93297731 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
93297675 TTATGAATAC
*
93297685 ATCATGTGGATATCATACAT
1 ATCATGTGCATATCATACAT
93297705 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
93297725 ACCATGT
1 ATCATGT
93297732 TTATCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:93297807 original size:25 final size:25
Alignment explanation
Indices: 93297768--93297815 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
93297758 ATATTTAAAC
* *
93297768 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
93297793 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
93297816 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:93303277 original size:39 final size:40
Alignment explanation
Indices: 93303219--93303319 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
93303209 AAATTGAATG
* *
93303219 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
93303258 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
93303298 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
93303320 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:93303312 original size:40 final size:40
Alignment explanation
Indices: 93303219--93303401 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
93303209 AAATTGAATG
* * * * *
93303219 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
93303258 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
93303298 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
93303338 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
93303378 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
93303402 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:93305402 original size:40 final size:40
Alignment explanation
Indices: 93305275--93305404 Score: 158
Period size: 40 Copynumber: 3.2 Consensus size: 40
93305265 ATGCTGGAAA
*
93305275 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGC-TAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAT-GTGG
* * **
93305315 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-ATGTGG
*
93305355 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
93305395 TTATATCCGG
1 TTATATCCGG
93305405 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
Found at i:93312447 original size:32 final size:33
Alignment explanation
Indices: 93312389--93312456 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 33
93312379 CATGCCATAA
* *
93312389 GGGCATGTTGGGCCACACAGGCAAGGCTAATTT
1 GGGCATGTTGGGACACACAGGCAAGGCCAATTT
* *
93312422 GGGCATG-TGGGACACACGGGTAAGGCCAATTT
1 GGGCATGTTGGGACACACAGGCAAGGCCAATTT
93312454 GGG
1 GGG
93312457 TGTGGGGGCC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 24 0.77
33 7 0.23
ACGTcount: A:0.24, C:0.19, G:0.38, T:0.19
Consensus pattern (33 bp):
GGGCATGTTGGGACACACAGGCAAGGCCAATTT
Found at i:93322758 original size:20 final size:20
Alignment explanation
Indices: 93322714--93322751 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93322704 AGGAATTAAA
* *
93322714 ATGAAAAGTTGTAAAATTGG
1 ATGAAAAATTCTAAAATTGG
93322734 ATGAAAAATTCTAAAATT
1 ATGAAAAATTCTAAAATT
93322752 TTATGAATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.16, T:0.32
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTGG
Found at i:93335814 original size:40 final size:40
Alignment explanation
Indices: 93335761--93335899 Score: 176
Period size: 40 Copynumber: 3.5 Consensus size: 40
93335751 GGATATAACG
* *
93335761 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCCGGTT-TAGTA
* *
93335801 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCCGGTTTAGTA
*
93335841 ACTCGCACAAATGCCTTCGGG-CTTAA-CCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCCGG-TTTAGTA
* *
93335880 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
93335900 ATCTTAGTCC
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
38 4 0.05
39 29 0.33
40 46 0.52
41 9 0.10
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCCGGTTTAGTA
Found at i:93343921 original size:39 final size:39
Alignment explanation
Indices: 93343800--93343938 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 39
93343790 GGATATAACG
* *
93343800 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGTT-TAGTA
*
93343840 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCC-GGTTTAGTA
*
93343880 ACTCGCACAAATGCCTTCGGG-CTTAACCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGG-TTTAGTA
* *
93343919 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
93343939 ATCTTAGTCC
Statistics
Matches: 89, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.36
40 49 0.55
41 6 0.07
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTAGTA
Found at i:93351085 original size:14 final size:13
Alignment explanation
Indices: 93351065--93351101 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
93351055 AATATTTGAC
93351065 TTGTTCTTAATTA
1 TTGTTCTTAATTA
93351078 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
93351092 TTGTT-TTAAT
1 TTGTTCTTAAT
93351102 ATTCTAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:93352854 original size:29 final size:29
Alignment explanation
Indices: 93352812--93352872 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
93352802 TCTAATAAAA
93352812 AACATAATAAAATAATGCACCAGGTAGGT
1 AACATAATAAAATAATGCACCAGGTAGGT
*
93352841 AACATAATAAAATAATGCACCAGGTATGT
1 AACATAATAAAATAATGCACCAGGTAGGT
93352870 AAC
1 AAC
93352873 TCTAAAAGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.21
Consensus pattern (29 bp):
AACATAATAAAATAATGCACCAGGTAGGT
Found at i:93355441 original size:41 final size:41
Alignment explanation
Indices: 93355384--93355480 Score: 194
Period size: 41 Copynumber: 2.4 Consensus size: 41
93355374 GGTTCTCATC
93355384 AGCTTGTGTGAGCAGCACTGTGTAGCTTTGCCATGACCATT
1 AGCTTGTGTGAGCAGCACTGTGTAGCTTTGCCATGACCATT
93355425 AGCTTGTGTGAGCAGCACTGTGTAGCTTTGCCATGACCATT
1 AGCTTGTGTGAGCAGCACTGTGTAGCTTTGCCATGACCATT
93355466 AGCTTGTGTGAGCAG
1 AGCTTGTGTGAGCAG
93355481 ACCCATGGAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.31
Consensus pattern (41 bp):
AGCTTGTGTGAGCAGCACTGTGTAGCTTTGCCATGACCATT
Found at i:93362253 original size:42 final size:42
Alignment explanation
Indices: 93362207--93362364 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 42
93362197 TGTTCTCGAT
*
93362207 TAAGACCACGTCT-GGACGTTGGCATTGATATGTGGTTACGAG
1 TAAGACCACGTCTGGGACATTGGCATTG-TATGTGGTTACGAG
* * * * * *
93362249 TAAGACCATGTCTGGGACATCGGCATCGTATTTGATT-CGTG
1 TAAGACCACGTCTGGGACATTGGCATTGTATGTGGTTACGAG
* * *
93362290 TAAGACC-CTGTCTGGGACAATGGCATTGATATG-AGATA-GCATG
1 TAAGACCAC-GTCTGGGACATTGGCATTG-TATGTGGTTACG-A-G
* *
93362333 TAAGACCACGTCTAGGACGTTGGCATTGTATG
1 TAAGACCACGTCTGGGACATTGGCATTGTATG
93362365 GTATATGTGA
Statistics
Matches: 90, Mismatches: 19, Indels: 14
0.73 0.15 0.11
Matches are distributed among these distances:
41 28 0.31
42 26 0.29
43 35 0.39
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACATTGGCATTGTATGTGGTTACGAG
Found at i:93364645 original size:40 final size:39
Alignment explanation
Indices: 93364600--93364728 Score: 150
Period size: 40 Copynumber: 3.3 Consensus size: 39
93364590 CGGAATATAA
93364600 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
93364640 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
93364680 CCGGATGTAGCCACAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
93364719 CCGGATATAA
1 CCGGATATAA
93364729 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 17, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
39 30 0.42
40 41 0.58
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:93364722 original size:39 final size:39
Alignment explanation
Indices: 93364616--93364765 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 39
93364606 ATAACCACGT
* *
93364616 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGCCAC
*
93364656 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCAC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGCCAC
* * *
93364694 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA-
1 -GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAA-TGCCAC
* * *
93364735 GCATAATTGACTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
93364766 TCATTCAATT
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
38 5 0.05
39 28 0.30
40 57 0.61
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGCCAC
Done.