Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 30 of 433
Found at i:7721146 original size:20 final size:20
Alignment explanation
Indices: 7721118--7721181 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
7721108 ACATTATTTT
*
7721118 TTTCGTATTTTATTAT-TGTA
1 TTTCATATTTTATTATAT-TA
* *
7721138 TTTCATATTATATCATATTA
1 TTTCATATTTTATTATATTA
*
7721158 TATCATATTTTATTTATATTA
1 TTTCATATTTTA-TTATATTA
7721179 TTT
1 TTT
7721182 ACATTGCATT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
20 25 0.71
21 10 0.29
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTCATATTTTATTATATTA
Found at i:7721155 original size:10 final size:10
Alignment explanation
Indices: 7721140--7721166 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7721130 TTATTGTATT
7721140 TCATATTATA
1 TCATATTATA
7721150 TCATATTATA
1 TCATATTATA
7721160 TCATATT
1 TCATATT
7721167 TTATTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (10 bp):
TCATATTATA
Found at i:7725576 original size:2 final size:2
Alignment explanation
Indices: 7725569--7725601 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7725559 TGGTGATTGG
7725569 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7725602 GTTCTATTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7728169 original size:2 final size:2
Alignment explanation
Indices: 7728162--7728187 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7728152 TAACATGTAA
7728162 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7728188 CAGTCATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7728358 original size:17 final size:19
Alignment explanation
Indices: 7728330--7728365 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7728320 TGTCGGCCTG
7728330 TGTGGACCCACAC-GCCCA
1 TGTGGACCCACACAGCCCA
7728348 TGTGG-CCCACACAGCCCA
1 TGTGGACCCACACAGCCCA
7728366 AAATAGCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.22, C:0.44, G:0.22, T:0.11
Consensus pattern (19 bp):
TGTGGACCCACACAGCCCA
Found at i:7732815 original size:15 final size:17
Alignment explanation
Indices: 7732785--7732817 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
7732775 AATGTTGAAT
7732785 ATGTTTAAATTGTATAA
1 ATGTTTAAATTGTATAA
7732802 ATGTTT-AA-TGTATAA
1 ATGTTTAAATTGTATAA
7732817 A
1 A
7732818 ATCAATTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (17 bp):
ATGTTTAAATTGTATAA
Found at i:7733141 original size:25 final size:24
Alignment explanation
Indices: 7733105--7733157 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
7733095 TACAAATGCA
7733105 GCTCTTTATGAG-TGTCCTGATATAG
1 GCTCTTTATGAGCT-TCCTGATAT-G
*
7733130 GCTCTTTTTGAGCTTCCTGATATG
1 GCTCTTTATGAGCTTCCTGATATG
7733154 GCTC
1 GCTC
7733158 GCTTGAACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 20 0.77
26 1 0.04
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.42
Consensus pattern (24 bp):
GCTCTTTATGAGCTTCCTGATATG
Found at i:7742188 original size:47 final size:47
Alignment explanation
Indices: 7742119--7742282 Score: 194
Period size: 47 Copynumber: 3.5 Consensus size: 47
7742109 CGCCCCTAAG
*
7742119 TGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
* * *
7742166 TGAACTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CAT
1 TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T
7742209 AAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 ---TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
** *
7742259 CAAACTCGGACTCAACTCAACGAG
1 TGAACTCAGACTCAACTCAACGAG
7742283 TTCAGACGTT
Statistics
Matches: 98, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 29 0.30
47 49 0.50
49 1 0.01
50 8 0.08
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (47 bp):
TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:7742274 original size:93 final size:93
Alignment explanation
Indices: 7742115--7742338 Score: 376
Period size: 93 Copynumber: 2.4 Consensus size: 93
7742105 AACCCGCCCC
**
7742115 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTTGAACTCAGACTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCAGACTCA
* *
7742180 ACTCAACGAGTTCGGACATTTGCATCCA
66 ACTCAACGAGTTCAGACATTCGCATCCA
* *
7742208 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCGGACTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCAGACTCA
*
7742273 ACTCAACGAGTTCAGACGTTCGCATCCA
66 ACTCAACGAGTTCAGACATTCGCATCCA
*
7742301 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
7742339 CAAACATCCT
Statistics
Matches: 122, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 122 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (93 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCAGACTCA
ACTCAACGAGTTCAGACATTCGCATCCA
Found at i:7742353 original size:46 final size:47
Alignment explanation
Indices: 7742113--7742353 Score: 200
Period size: 46 Copynumber: 5.2 Consensus size: 47
7742103 GTAACCCGCC
*
7742113 CCTAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACAT
* * * *
7742162 CTCT---TGAACTCAGACTCAACTCAACGAGTTCGGA--CATTTGCAT
1 C-CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACAT
* *
7742205 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACAT
* * * *
7742255 CTCTCA---AACTCGGACTCAACTCAACGAGTTCAGA--CGT-TCGCAT
1 C-CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAT-ACAT
* *
7742298 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACAT
7742346 CCT-AGTGA
1 CCTAAGTGA
7742354 CATGTCACTT
Statistics
Matches: 153, Mismatches: 21, Indels: 39
0.72 0.10 0.18
Matches are distributed among these distances:
42 3 0.02
43 12 0.08
45 4 0.03
46 61 0.40
47 54 0.35
48 8 0.05
49 1 0.01
50 9 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (47 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACAT
Found at i:7748529 original size:27 final size:25
Alignment explanation
Indices: 7748499--7748555 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
7748489 ACATAAACGA
7748499 GAAGCCCTATCTCGAGCCATATAATGG
1 GAAGCCC-ATCT-GAGCCATATAATGG
* * **
7748526 GAAGCTCATGTGAGCTGTATAATGG
1 GAAGCCCATCTGAGCCATATAATGG
7748551 GAAGC
1 GAAGC
7748556 TTATCCGGGC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 17 0.65
26 3 0.12
27 6 0.23
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (25 bp):
GAAGCCCATCTGAGCCATATAATGG
Found at i:7748546 original size:25 final size:25
Alignment explanation
Indices: 7748518--7748615 Score: 99
Period size: 25 Copynumber: 4.0 Consensus size: 25
7748508 TCTCGAGCCA
7748518 TATAATGGGAAGCTCATGTGAGCTG
1 TATAATGGGAAGCTCATGTGAGCTG
* ** *
7748543 TATAATGGGAAGCTTATCCGGGCTG
1 TATAATGGGAAGCTCATGTGAGCTG
* * **
7748568 TATAACGGGAAGCTCATATGAGCCA
1 TATAATGGGAAGCTCATGTGAGCTG
* *
7748593 TAT-TTAGGAAGCTCATGTGAGCT
1 TATAATGGGAAGCTCATGTGAGCT
7748616 AATAACGGGT
Statistics
Matches: 57, Mismatches: 16, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
24 15 0.26
25 42 0.74
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (25 bp):
TATAATGGGAAGCTCATGTGAGCTG
Found at i:7751363 original size:20 final size:20
Alignment explanation
Indices: 7751303--7751380 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 20
7751293 AATGTCAGGT
* *
7751303 GAAATAAAAATAATAAAATAA
1 GAAATTAAAATAA-AAATTAA
*
7751324 -AAATTTAATAA-AAAATTTAA
1 GAAA-TTAA-AATAAAAATTAA
** *
7751344 GATTTTCAAATAAAAATTAA
1 GAAATTAAAATAAAAATTAA
7751364 GAAATTAAAATAAAAAT
1 GAAATTAAAATAAAAAT
7751381 GTCTTTATTA
Statistics
Matches: 43, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
19 2 0.05
20 33 0.77
21 6 0.14
22 2 0.05
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (20 bp):
GAAATTAAAATAAAAATTAA
Found at i:7753398 original size:21 final size:19
Alignment explanation
Indices: 7753374--7753414 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 19
7753364 ATTAATAATT
7753374 AAAATTTAAATTTAAATATAA
1 AAAATTTAAA-TTAAAT-TAA
7753395 AAAATTTAAATTAAATTAA
1 AAAATTTAAATTAAATTAA
7753414 A
1 A
7753415 TTTCTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.20
20 6 0.30
21 10 0.50
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTTAAATTAAATTAA
Found at i:7763831 original size:2 final size:2
Alignment explanation
Indices: 7763824--7763855 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7763814 GACGAAGTAC
7763824 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7763856 GAAAAAGAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7766250 original size:28 final size:29
Alignment explanation
Indices: 7766219--7766280 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
7766209 TTTGCTAAAT
* *
7766219 AATTTGGACTAAATCCATTT-TTTTAATG
1 AATTTGGACCAAATCCATTTCTTTTAATA
* * *
7766247 AATTTTGTCCAAATCCATTTCTTTTTATA
1 AATTTGGACCAAATCCATTTCTTTTAATA
7766276 AATTT
1 AATTT
7766281 AGTTTTTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 17 0.61
29 11 0.39
ACGTcount: A:0.31, C:0.13, G:0.06, T:0.50
Consensus pattern (29 bp):
AATTTGGACCAAATCCATTTCTTTTAATA
Found at i:7769177 original size:21 final size:21
Alignment explanation
Indices: 7769117--7769177 Score: 52
Period size: 25 Copynumber: 2.7 Consensus size: 21
7769107 TAATACATAA
*
7769117 AAAATATTAAAAATATTAAAAT
1 AAAATTTTAAAAA-ATTAAAAT
*
7769139 AAATATTTTCTAACAAATTGAAAAT
1 AAA-A-TTT-TAAAAAATT-AAAAT
7769164 -AAATTTTAAAAAAT
1 AAAATTTTAAAAAAT
7769178 ATATAGATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
21 7 0.22
22 6 0.19
23 2 0.06
24 7 0.22
25 10 0.31
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (21 bp):
AAAATTTTAAAAAATTAAAAT
Found at i:7769254 original size:30 final size:31
Alignment explanation
Indices: 7769220--7769283 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
7769210 ACTTAACAAG
*
7769220 CAAATGCCTCTAAAATAATAA-TAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAAATTAA
* *
7769250 CAAATGTCTTTAAAATAATAACAAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAAATTAA
7769281 CAA
1 CAA
7769284 TAAATAAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 19 0.63
31 11 0.37
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (31 bp):
CAAATGCCTCTAAAATAATAACAAAAATTAA
Found at i:7771879 original size:22 final size:22
Alignment explanation
Indices: 7771851--7771934 Score: 89
Period size: 22 Copynumber: 3.8 Consensus size: 22
7771841 TATTGTTCAG
*
7771851 CACTTCGGTGCCCACTGTCTAA
1 CACTTCGGTGCCTACTGTCTAA
* *
7771873 CACTTCGGTGCCTATTG-CTCAG
1 CACTTCGGTGCCTACTGTCT-AA
* * *
7771895 CACTTTGGTGCCTATTGTTTAA
1 CACTTCGGTGCCTACTGTCTAA
7771917 GCACTTCGGTGCCTACTG
1 -CACTTCGGTGCCTACTG
7771935 GTGTGGTGTA
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
21 2 0.04
22 33 0.65
23 16 0.31
ACGTcount: A:0.15, C:0.30, G:0.21, T:0.33
Consensus pattern (22 bp):
CACTTCGGTGCCTACTGTCTAA
Found at i:7771887 original size:44 final size:45
Alignment explanation
Indices: 7771839--7771931 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 45
7771829 CACTAGGATA
*
7771839 CCTATTGTTCAGCACTTCGGTGCCCACTGTCTAA-CACTTCGGTG
1 CCTATTGCTCAGCACTTCGGTGCCCACTGTCTAAGCACTTCGGTG
* * * *
7771883 CCTATTGCTCAGCACTTTGGTGCCTATTGTTTAAGCACTTCGGTG
1 CCTATTGCTCAGCACTTCGGTGCCCACTGTCTAAGCACTTCGGTG
7771928 CCTA
1 CCTA
7771932 CTGGTGTGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 29 0.67
45 14 0.33
ACGTcount: A:0.16, C:0.29, G:0.20, T:0.34
Consensus pattern (45 bp):
CCTATTGCTCAGCACTTCGGTGCCCACTGTCTAAGCACTTCGGTG
Found at i:7782024 original size:72 final size:72
Alignment explanation
Indices: 7781907--7782051 Score: 281
Period size: 72 Copynumber: 2.0 Consensus size: 72
7781897 GTCTTGGGAT
7781907 TTATATTTTATCAAGTTCAAATATTTTTCTTCAATCTTCATTCATGCCAAAGCAGCAATATACAA
1 TTATATTTTATCAAGTTCAAATATTTTTCTTCAATCTTCATTCATGCCAAAGCAGCAATATACAA
7781972 AGAATCA
66 AGAATCA
*
7781979 TTATATTTTATCAAGTTCAAATATTTTTCTTCAATCTTCATTCATGCCAAAGCAGCAATATACGA
1 TTATATTTTATCAAGTTCAAATATTTTTCTTCAATCTTCATTCATGCCAAAGCAGCAATATACAA
7782044 AGAATCA
66 AGAATCA
7782051 T
1 T
7782052 ACTTGCAATT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.38
Consensus pattern (72 bp):
TTATATTTTATCAAGTTCAAATATTTTTCTTCAATCTTCATTCATGCCAAAGCAGCAATATACAA
AGAATCA
Found at i:7785170 original size:40 final size:40
Alignment explanation
Indices: 7785118--7785198 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
7785108 AACACATTTA
7785118 AAAATGTATATTTCATTTATTACAATATTAACAATGAGTT
1 AAAATGTATATTTCATTTATTACAATATTAACAATGAGTT
7785158 AAAATGTATATTTCATTTATTACAATATTAACAATGAGTT
1 AAAATGTATATTTCATTTATTACAATATTAACAATGAGTT
7785198 A
1 A
7785199 GCATAAATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.42
Consensus pattern (40 bp):
AAAATGTATATTTCATTTATTACAATATTAACAATGAGTT
Found at i:7786317 original size:16 final size:17
Alignment explanation
Indices: 7786296--7786333 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
7786286 CAGTTCGTAT
*
7786296 TTTTAG-AAAACCATTG
1 TTTTAGAAAAACCATAG
7786312 TTTTAGTAAAAACCATAG
1 TTTTAG-AAAAACCATAG
7786330 TTTT
1 TTTT
7786334 TAGATATCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
18 13 0.68
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (17 bp):
TTTTAGAAAAACCATAG
Found at i:7788273 original size:34 final size:34
Alignment explanation
Indices: 7788230--7788298 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
7788220 GTACGAGATG
7788230 TTACTAAGATAGATGCAAGACAAATACAACTTAA
1 TTACTAAGATAGATGCAAGACAAATACAACTTAA
7788264 TTACTAAGATAGATGCAAGACAAATACAACTTAA
1 TTACTAAGATAGATGCAAGACAAATACAACTTAA
7788298 T
1 T
7788299 ATCTTAAGAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.25
Consensus pattern (34 bp):
TTACTAAGATAGATGCAAGACAAATACAACTTAA
Found at i:7788377 original size:18 final size:18
Alignment explanation
Indices: 7788354--7788391 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7788344 TCAAGGTTAA
7788354 GAGAAATTTAAAACTTTG
1 GAGAAATTTAAAACTTTG
7788372 GAGAAATTTAAAACTTTG
1 GAGAAATTTAAAACTTTG
7788390 GA
1 GA
7788392 ACATTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (18 bp):
GAGAAATTTAAAACTTTG
Found at i:7788694 original size:27 final size:26
Alignment explanation
Indices: 7788664--7788720 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
7788654 TTATCTTTTC
7788664 AAATTGAGAAATTT-AATTTAAATAATA
1 AAATTGA-AAATTTAAATTT-AATAATA
* *
7788691 AAATTTAAAATTTAAATTTAATTATA
1 AAATTGAAAATTTAAATTTAATAATA
7788717 AAAT
1 AAAT
7788721 ATAAAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (26 bp):
AAATTGAAAATTTAAATTTAATAATA
Found at i:7788717 original size:26 final size:26
Alignment explanation
Indices: 7788672--7788727 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
7788662 TCAAATTGAG
*
7788672 AAATTTAATTTAAATAATAAAATTTA
1 AAATTTAATTTAAATAATAAAATATA
*
7788698 AAATTTAAATTT-AATTATAAAATATA
1 AAATTT-AATTTAAATAATAAAATATA
7788724 AAAT
1 AAAT
7788728 AATTATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (26 bp):
AAATTTAATTTAAATAATAAAATATA
Found at i:7808352 original size:127 final size:126
Alignment explanation
Indices: 7808166--7808492 Score: 331
Period size: 129 Copynumber: 2.6 Consensus size: 126
7808156 AGTCCAACGA
* * * *
7808166 AAAACCGAAACCCAGCAC-AGTAAGGCACGATTCCTCGAATTTCTAAACATTGAACATTGCCTTG
1 AAAATCGAAACCCAGCACGA-TAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGCCTTG
* *
7808230 TTTTAGAA-TTTAGAA-AACATGAGTGAAA-TTCTAAAGGAATATTCGATTATTTCGAACAAACG
65 TTTTAGAATTTTAGAAGAAC-GGA-TGAAATTTC-AAAGGAATATTCGATTATTT-GAACAAACA
7808292 G
126 G
* * * *
7808293 GAAATTGCAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCCTTCG
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGCCTT-G
* * * ** *
7808358 TTTTAAGGAATTTTTGAAGTACGGATGAAATTTCAAAGGAATATTTGATTATTTGGGCAAATAG
65 TTTT-A-GAATTTTAGAAGAACGGATGAAATTTCAAAGGAATATTCGATTATTTGAACAAACAG
* * * * * *
7808422 AAAATCGAAACCCGGCACGGTTGGGCACGATTCCTCGAGTTCCCAAACATC-AACTATTACCTTT
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATCGAAC-ATTGCC-TT
7808486 GTTTTAG
64 GTTTTAG
7808493 TGAATCTTCA
Statistics
Matches: 165, Mismatches: 26, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
127 54 0.33
128 10 0.06
129 59 0.36
130 29 0.18
131 11 0.07
132 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (126 bp):
AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGCCTTGT
TTTAGAATTTTAGAAGAACGGATGAAATTTCAAAGGAATATTCGATTATTTGAACAAACAG
Found at i:7811761 original size:36 final size:36
Alignment explanation
Indices: 7811714--7811786 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
7811704 CTGTTAAATG
7811714 ATTGAATTCAATCTGTAGTAGCTCGATTTTCAACAA
1 ATTGAATTCAATCTGTAGTAGCTCGATTTTCAACAA
7811750 ATTGAATTCAATCTGTAGTAGCTCGATTTTCAACAA
1 ATTGAATTCAATCTGTAGTAGCTCGATTTTCAACAA
7811786 A
1 A
7811787 CCGGAAATGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (36 bp):
ATTGAATTCAATCTGTAGTAGCTCGATTTTCAACAA
Found at i:7823539 original size:21 final size:21
Alignment explanation
Indices: 7823514--7823569 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
7823504 GTGATGGTCT
**
7823514 CACACACTCGTGTGTCCATCA
1 CACACACTCGTGTGTCCAAAA
*
7823535 GACACGAC-CGTGTGTCCAAAA
1 CACAC-ACTCGTGTGTCCAAAA
7823556 CACACACTCGTGTG
1 CACACACTCGTGTG
7823570 GGATCCCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.27, C:0.34, G:0.20, T:0.20
Consensus pattern (21 bp):
CACACACTCGTGTGTCCAAAA
Found at i:7830245 original size:23 final size:25
Alignment explanation
Indices: 7830215--7830262 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
7830205 GATTTTTTAA
*
7830215 AAATTTTATAA-TTTTTA-AAATAT
1 AAATTTTAGAATTTTTTATAAATAT
7830238 AAATTTTAGAATTTTTTATAAATAT
1 AAATTTTAGAATTTTTTATAAATAT
7830263 TTAGAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.45
24 6 0.27
25 6 0.27
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
AAATTTTAGAATTTTTTATAAATAT
Found at i:7830286 original size:41 final size:41
Alignment explanation
Indices: 7830193--7830278 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 41
7830183 AAATTTATTT
* *
7830193 ATATATATTTTAGATTTTTTAAAAATTTTATAATTTTTAAA
1 ATATAAATTTTAGATTTTTTAAAAATTTTAGAATTTTTAAA
* *
7830234 ATATAAATTTTAGAATTTTTTATAAATATTTAGAATTTTAAAA
1 ATATAAATTTTAG-ATTTTTTAAAAAT-TTTAGAATTTTTAAA
7830277 AT
1 AT
7830279 TATTTTTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 12 0.31
42 12 0.31
43 15 0.38
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (41 bp):
ATATAAATTTTAGATTTTTTAAAAATTTTAGAATTTTTAAA
Found at i:7830289 original size:62 final size:64
Alignment explanation
Indices: 7830175--7830297 Score: 164
Period size: 62 Copynumber: 2.0 Consensus size: 64
7830165 AGAAATTTTA
* *
7830175 AAATTTTAAAATTTATTTATATATATTTTAGATTTTTTAAAAATTTTATAATTTTT-AAAATAT
1 AAATTTTAAAATTTATTTATAAATATTTTAGATATTTTAAAAATTTTATAATTTTTGAAAATAT
* *
7830238 AAATTTTAGAATTT-TTTATAAATA-TTTAGA-ATTTTAAAAATTATTTTTAATTTTTGAAAA
1 AAATTTTAAAATTTATTTATAAATATTTTAGATATTTTAAAAA-T-TTTATAATTTTTGAAAA
7830298 CTATTTTGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
60 9 0.17
61 7 0.13
62 20 0.38
63 17 0.32
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (64 bp):
AAATTTTAAAATTTATTTATAAATATTTTAGATATTTTAAAAATTTTATAATTTTTGAAAATAT
Found at i:7830312 original size:20 final size:20
Alignment explanation
Indices: 7830198--7830311 Score: 62
Period size: 20 Copynumber: 5.7 Consensus size: 20
7830188 TATTTATATA
*
7830198 TATTTTAGATTTTTTAAAAA-
1 TATTTT-GAATTTTTAAAAAC
7830218 T-TTTAT-AATTTTTAAAATA-
1 TATTT-TGAATTTTTAAAA-AC
*
7830237 TAAATTTTAGAATTTTTTATAAA-
1 T--ATTTT-GAA-TTTTTAAAAAC
* *
7830260 TATTTAGAA-TTTTAAAAAT
1 TATTTTGAATTTTTAAAAAC
* *
7830279 TATTTTTAATTTTTGAAAAC
1 TATTTTGAATTTTTAAAAAC
7830299 TATTTTG-ATTTTT
1 TATTTTGAATTTTT
7830312 TTTGTAATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
18 18 0.24
19 18 0.24
20 19 0.25
21 5 0.07
22 3 0.04
23 4 0.05
24 8 0.11
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (20 bp):
TATTTTGAATTTTTAAAAAC
Found at i:7838879 original size:46 final size:46
Alignment explanation
Indices: 7838749--7838972 Score: 238
Period size: 46 Copynumber: 4.9 Consensus size: 46
7838739 GCCTATGTTT
* *
7838749 CAAGCTCCTGCA-ATGTTGTGGACTCGAGAATAAAAGAATAGGTTC
1 CAAGCTCCTGCATATGTTGTGAACTCGAGAATACAAGAATAGGTTC
*
7838794 CAAGCTCCTGCATATGTTGTGAACTCGAGAATAAAAGAATAGGTTC
1 CAAGCTCCTGCATATGTTGTGAACTCGAGAATACAAGAATAGGTTC
* * *
7838840 CAAGCTCCTGCATATGTTGTGAACTCGAGAATACGAGAATAAGTTT
1 CAAGCTCCTGCATATGTTGTGAACTCGAGAATACAAGAATAGGTTC
* * ** * * * * * *
7838886 CGAGGTCCTATATATGTTGCGGACTCAATAATACAA-ATTTAGGTTT
1 CAAGCTCCTGCATATGTTGTGAACTCGAGAATACAAGA-ATAGGTTC
* **
7838932 CAAGCTCATGCATATGTT-ACAGACTCGAGAATACAAGAATA
1 CAAGCTCCTGCATATGTTGTGA-ACTCGAGAATACAAGAATA
7838973 TTAAGTCTTG
Statistics
Matches: 148, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
45 13 0.09
46 134 0.91
47 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (46 bp):
CAAGCTCCTGCATATGTTGTGAACTCGAGAATACAAGAATAGGTTC
Found at i:7840217 original size:31 final size:32
Alignment explanation
Indices: 7840182--7840251 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 32
7840172 CATTAAATCT
* *
7840182 AACCAAAAATAGCAAATATAGCATG-AAATGC
1 AACCAAAAACAGCAAATATAGCATGAAAATAC
*
7840213 AACC--AAACAGCAAATTTAGCATGCAAAATAC
1 AACCAAAAACAGCAAATATAGCATG-AAAATAC
7840244 AACCAAAA
1 AACCAAAA
7840252 CATTAAATCT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
29 17 0.53
31 13 0.41
33 2 0.06
ACGTcount: A:0.56, C:0.20, G:0.10, T:0.14
Consensus pattern (32 bp):
AACCAAAAACAGCAAATATAGCATGAAAATAC
Found at i:7840227 original size:29 final size:30
Alignment explanation
Indices: 7840192--7840250 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
7840182 AACCAAAAAT
*
7840192 AGCAAATATAGCATG-AAATGCAACCAAAC
1 AGCAAATATAGCATGAAAATACAACCAAAC
*
7840221 AGCAAATTTAGCATGCAAAATACAACCAAA
1 AGCAAATATAGCATG-AAAATACAACCAAA
7840251 ACATTAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 14 0.54
31 12 0.46
ACGTcount: A:0.53, C:0.20, G:0.12, T:0.15
Consensus pattern (30 bp):
AGCAAATATAGCATGAAAATACAACCAAAC
Found at i:7840950 original size:13 final size:14
Alignment explanation
Indices: 7840924--7840952 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7840914 ACTAACGACG
7840924 AATTAAACCATTAT
1 AATTAAACCATTAT
7840938 AATTAAA-CATTAT
1 AATTAAACCATTAT
7840951 AA
1 AA
7840953 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:7846031 original size:9 final size:9
Alignment explanation
Indices: 7846017--7846154 Score: 74
Period size: 9 Copynumber: 15.3 Consensus size: 9
7846007 TAACTCTAAT
7846017 TAAGTTATG
1 TAAGTTATG
7846026 TAAGTTATG
1 TAAGTTATG
* * *
7846035 ATATGATATA
1 -TAAGTTATG
* *
7846045 T-ATTTATA
1 TAAGTTATG
7846053 T-A-TTATG
1 TAAGTTATG
7846060 TAAGTTATG
1 TAAGTTATG
*
7846069 TAAATTATG
1 TAAGTTATG
7846078 TAAGTTATCCG
1 TAAGTTAT--G
7846089 -AA-TTATG
1 TAAGTTATG
*
7846096 TAAATTATG
1 TAAGTTATG
*
7846105 TAAGATATGATA
1 TAAG-T-T-ATG
*
7846117 TATATTTATG
1 TA-AGTTATG
7846127 T-A-TTATG
1 TAAGTTATG
7846134 TAAGTTATG
1 TAAGTTATG
*
7846143 TAAATTATG
1 TAAGTTATG
7846152 TAA
1 TAA
7846155 ATATGATATA
Statistics
Matches: 102, Mismatches: 14, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
7 12 0.12
8 11 0.11
9 58 0.57
10 12 0.12
11 3 0.03
12 5 0.05
13 1 0.01
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:7846077 original size:18 final size:18
Alignment explanation
Indices: 7846054--7846154 Score: 98
Period size: 18 Copynumber: 5.5 Consensus size: 18
7846044 ATATTTATAT
7846054 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
***
7846072 ATTATGTAAGTTATCCGA
1 ATTATGTAAGTTATGTAA
*
7846090 ATTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
7846108 GATATGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
7846128 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
7846146 ATTATGTAA
1 ATTATGTAA
7846155 ATATGATATA
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
16 7 0.11
17 4 0.06
18 39 0.59
19 4 0.06
20 1 0.02
21 4 0.06
22 7 0.11
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.45
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:7846140 original size:56 final size:52
Alignment explanation
Indices: 7846072--7846179 Score: 144
Period size: 56 Copynumber: 2.0 Consensus size: 52
7846062 AGTTATGTAA
*
7846072 ATTATGTAAGTTATCCGAATTATGTAAATTATGTAAGATATGATATATATTTATGT
1 ATTATGTAAGTTATCCAAATTATGTAAA-TATG--AGATAT-ATATATATTTATGT
** *
7846128 ATTATGTAAGTTATGTAAATTATGTAAATATGATATATATATATATTTATGT
1 ATTATGTAAGTTATCCAAATTATGTAAATATGAGATATATATATATTTATGT
7846180 TGATGGGATT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
52 14 0.29
53 5 0.10
55 4 0.08
56 25 0.52
ACGTcount: A:0.39, C:0.02, G:0.13, T:0.46
Consensus pattern (52 bp):
ATTATGTAAGTTATCCAAATTATGTAAATATGAGATATATATATATTTATGT
Found at i:7846155 original size:9 final size:9
Alignment explanation
Indices: 7846054--7846156 Score: 86
Period size: 9 Copynumber: 11.2 Consensus size: 9
7846044 ATATTTATAT
7846054 ATTATGTAA
1 ATTATGTAA
*
7846063 GTTATGTAA
1 ATTATGTAA
7846072 ATTATGTAA
1 ATTATGTAA
* ***
7846081 GTTATCCGA
1 ATTATGTAA
7846090 ATTATGTAA
1 ATTATGTAA
7846099 ATTATGTAA
1 ATTATGTAA
7846108 GA-TATGATATA
1 -ATTATG-TA-A
7846119 TATTTATGT--
1 -A-TTATGTAA
7846128 ATTATGTAA
1 ATTATGTAA
*
7846137 GTTATGTAA
1 ATTATGTAA
7846146 ATTATGTAA
1 ATTATGTAA
7846155 AT
1 AT
7846157 ATGATATATA
Statistics
Matches: 74, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
7 6 0.08
8 1 0.01
9 57 0.77
10 3 0.04
11 2 0.03
12 1 0.01
13 4 0.05
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.45
Consensus pattern (9 bp):
ATTATGTAA
Found at i:7846622 original size:5 final size:5
Alignment explanation
Indices: 7846612--7846636 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7846602 TTTTCGTGAT
7846612 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
7846637 CTTTAGATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:7846628 original size:96 final size:96
Alignment explanation
Indices: 7846364--7846694 Score: 503
Period size: 96 Copynumber: 3.4 Consensus size: 96
7846354 ATGAGTTATT
*
7846364 TTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAA-TATTCTTCGTGATTAAAATAAAA
1 TTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAAGT-TTTTTCGTGATTAAAATAAAA
7846428 TAAAATAATATTTAAAATAAAACTTTAAATACAATTTAA
65 T---A-AA-A--TAAAATAAAACTTTAAATACAATTTAA
* *
7846467 TTTAATTAGGTCATTTAAAAATAAAATAAAAGTAGACAAAAGTTTTTTC---A-T-GAATAAAAT
1 TTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAAGTTTTTTCGTGATTAAAATAAAAT
7846527 AAAATAAAATAAAACTTTAAATACAATTTAA
66 AAAATAAAATAAAACTTTAAATACAATTTAA
*
7846558 TTTAATTAGGTAATTTAAAAGTAAAATAAAAGTAGACAAAAGTTTTTTCGTGATTAAAATAAAAT
1 TTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAAGTTTTTTCGTGATTAAAATAAAAT
*
7846623 AAAATAAAATAAAACTTTAGATACAATTTAA
66 AAAATAAAATAAAACTTTAAATACAATTTAA
7846654 TTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAA
1 TTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAA
7846695 TATTTTAAAC
Statistics
Matches: 214, Mismatches: 8, Indels: 19
0.89 0.03 0.08
Matches are distributed among these distances:
91 74 0.35
93 1 0.00
94 3 0.01
95 2 0.01
96 78 0.36
98 8 0.04
99 1 0.00
100 1 0.00
103 45 0.21
104 1 0.00
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.33
Consensus pattern (96 bp):
TTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAAGTTTTTTCGTGATTAAAATAAAAT
AAAATAAAATAAAACTTTAAATACAATTTAA
Found at i:7846825 original size:99 final size:97
Alignment explanation
Indices: 7846657--7846840 Score: 266
Period size: 99 Copynumber: 1.9 Consensus size: 97
7846647 AATTTAATTT
**
7846657 AATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTAAACATTGTTAAGTCTTTCTT
1 AATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATACATTAAACATTGTTAAGTCTTTCTT
*
7846722 TTAATTTGTATTTATTAATTTGTTAATTTAAA
66 TTAATTTGCATTTATTAATTTGTTAATTTAAA
*
7846754 AATTAGGTAATTTAAAAATAAAATAAAA-TATTTA-AATTAATGACATTAAAC-TTGTTAAGTCT
1 AATTAGGTAATTTAAAAATAAAATAAAAGTA--GACAA--AAT-ACATTAAACATTGTTAAGTCT
7846816 TTCTTTTAATTTGCATTTATTAATT
61 TTCTTTTAATTTGCATTTATTAATT
7846841 CAAGAAAACA
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
96 2 0.03
97 30 0.38
98 1 0.01
99 38 0.49
100 7 0.09
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.45
Consensus pattern (97 bp):
AATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATACATTAAACATTGTTAAGTCTTTCTT
TTAATTTGCATTTATTAATTTGTTAATTTAAA
Found at i:7847517 original size:8 final size:8
Alignment explanation
Indices: 7847504--7847559 Score: 67
Period size: 8 Copynumber: 7.0 Consensus size: 8
7847494 CAAAAAATTC
7847504 CACTATTA
1 CACTATTA
7847512 CACTATTA
1 CACTATTA
7847520 CACTATTA
1 CACTATTA
* * *
7847528 CGCAATTC
1 CACTATTA
*
7847536 CACTATTC
1 CACTATTA
*
7847544 CACTATTC
1 CACTATTA
7847552 CACTATTA
1 CACTATTA
7847560 TCATAATCAC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 42 1.00
ACGTcount: A:0.32, C:0.30, G:0.02, T:0.36
Consensus pattern (8 bp):
CACTATTA
Found at i:7847525 original size:16 final size:16
Alignment explanation
Indices: 7847500--7847559 Score: 84
Period size: 16 Copynumber: 3.8 Consensus size: 16
7847490 CAATCAAAAA
7847500 ATTCCACTATTACACT
1 ATTCCACTATTACACT
* * *
7847516 ATTACACTATTACGCA
1 ATTCCACTATTACACT
*
7847532 ATTCCACTATTCCACT
1 ATTCCACTATTACACT
7847548 ATTCCACTATTA
1 ATTCCACTATTA
7847560 TCATAATCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.32, C:0.30, G:0.02, T:0.37
Consensus pattern (16 bp):
ATTCCACTATTACACT
Found at i:7847540 original size:32 final size:32
Alignment explanation
Indices: 7847499--7847559 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
7847489 CCAATCAAAA
7847499 AATTCCACTATTACACTATTACACTATTACGC
1 AATTCCACTATTACACTATTACACTATTACGC
* *
7847531 AATTCCACTATTCCACTATTCCACTATTA
1 AATTCCACTATTACACTATTACACTATTA
7847560 TCATAATCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.33, C:0.30, G:0.02, T:0.36
Consensus pattern (32 bp):
AATTCCACTATTACACTATTACACTATTACGC
Found at i:7849280 original size:127 final size:127
Alignment explanation
Indices: 7849076--7849304 Score: 347
Period size: 127 Copynumber: 1.8 Consensus size: 127
7849066 TGTATAGTAA
* * *
7849076 ACTTTAATTCTTTTGCGGCGTTTTTAAAAGCGCCACTAATACACTATTATACTAAAACGGCGCCG
1 ACTTTAATTCTGTTGCGGCGTTTTTAAAAGCGCCACTAATACACTATCATACTAAAACGACGCCG
7849141 TTTTCTTTAAACTATACTGTCTTTTGCGGCGTTTTTTAGAAAAACGACGATGCTTCCAATAC
66 TTTTCTTTAAACTATACTGTCTTTTGCGGCGTTTTTTAGAAAAACGACGATGCTTCCAATAC
* *
7849203 ACTTTAATTCTGTTGCGGCGTTTTTCAAAA-CGCCACTAAT-CCCTTATCCA-ACTAAAATGACG
1 ACTTTAATTCTGTTGCGGCGTTTTT-AAAAGCGCCACTAATACAC-TAT-CATACTAAAACGACG
* *
7849265 CCGTTTTCTTTAAACTATACTGTTTTTTGCGGTGTTTTTT
63 CCGTTTTCTTTAAACTATACTGTCTTTTGCGGCGTTTTTT
7849305 TAAATAACGC
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
126 2 0.02
127 85 0.92
128 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.39
Consensus pattern (127 bp):
ACTTTAATTCTGTTGCGGCGTTTTTAAAAGCGCCACTAATACACTATCATACTAAAACGACGCCG
TTTTCTTTAAACTATACTGTCTTTTGCGGCGTTTTTTAGAAAAACGACGATGCTTCCAATAC
Found at i:7850403 original size:14 final size:14
Alignment explanation
Indices: 7850374--7850412 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
7850364 TTCTACACCT
* *
7850374 TAAACCCTGAACCA
1 TAAACCCTAAATCA
*
7850388 TATACCCTAAATCA
1 TAAACCCTAAATCA
7850402 TAAACCCTAAA
1 TAAACCCTAAA
7850413 CTATAATGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.31, G:0.03, T:0.21
Consensus pattern (14 bp):
TAAACCCTAAATCA
Found at i:7853071 original size:48 final size:48
Alignment explanation
Indices: 7853008--7853185 Score: 241
Period size: 48 Copynumber: 3.7 Consensus size: 48
7852998 TAGGGTTATG
* *
7853008 TGTGATCCCACGTAAGACCATGTCTGGGACATGGCATTGACATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGACATCGATA
* *
7853056 TGTGATCCCATGTAAGACCATATCTGAGATATGGCATTGGA-ATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATT-GACATCGATA
* * *
7853104 TGTGATCCCATGTAAGACCATATCTAGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGACATCGATA
** * *
7853152 TGTGATTTCATGTAAGACTATGTCTGGGACATGG
1 TGTGATCCCATGTAAGACCATATCTGGGACATGG
7853186 TATCGATATG
Statistics
Matches: 115, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 1 0.01
48 112 0.97
49 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGACATCGATA
Found at i:7853703 original size:18 final size:18
Alignment explanation
Indices: 7853661--7853705 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
7853651 GAAAATTGAG
7853661 AATTTTT-AAAACACGAA
1 AATTTTTGAAAACACGAA
7853678 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
7853695 AATTTTTGAAA
1 AATTTTTGAAA
7853706 CCTGAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.15
17 14 0.54
18 8 0.31
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:7854335 original size:15 final size:17
Alignment explanation
Indices: 7854315--7854346 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
7854305 TTAGGAAACG
7854315 TACATAA-A-AAATATA
1 TACATAATATAAATATA
7854330 TACATAATATAAATATA
1 TACATAATATAAATATA
7854347 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:7854886 original size:11 final size:11
Alignment explanation
Indices: 7854852--7854893 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
7854842 AAATCATTTT
7854852 GAAGAGAGAAA
1 GAAGAGAGAAA
* *
7854863 GAA-AAAAAAA
1 GAAGAGAGAAA
*
7854873 GAAGGGAGAAA
1 GAAGAGAGAAA
7854884 GAAGAGAGAA
1 GAAGAGAGAA
7854894 GGGAGGGGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:7855376 original size:20 final size:20
Alignment explanation
Indices: 7855351--7855389 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7855341 AGGGTTTCTT
*
7855351 GGTTTTTTTTTGGGGGGCTA
1 GGTTTTTTTTGGGGGGGCTA
7855371 GGTTTTTTTTGGGGGGGCT
1 GGTTTTTTTTGGGGGGGCT
7855390 TAATGGGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.03, C:0.05, G:0.44, T:0.49
Consensus pattern (20 bp):
GGTTTTTTTTGGGGGGGCTA
Found at i:7856169 original size:87 final size:87
Alignment explanation
Indices: 7856076--7856268 Score: 368
Period size: 87 Copynumber: 2.2 Consensus size: 87
7856066 GTGAGCCAAT
*
7856076 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTATCTTGAAAAGCAGATTTTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAACTTATCTTGAAAAGCAGATTTTGAAA
7856141 ATACCTCGACATGTGACTCGAG
66 ATACCTCGACATGTGACTCGAG
*
7856163 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAACTTGTCTTGAAAAGCAGATTTTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAACTTATCTTGAAAAGCAGATTTTGAAA
7856228 ATACCTCGACATGTGACTCGAG
66 ATACCTCGACATGTGACTCGAG
7856250 GCTCAACTCACCTCTCGCA
1 GCTCAACTCACCTCTCGCA
7856269 GAAATTAAAA
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 104 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (87 bp):
GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAACTTATCTTGAAAAGCAGATTTTGAAA
ATACCTCGACATGTGACTCGAG
Found at i:7856425 original size:73 final size:73
Alignment explanation
Indices: 7856335--7857823 Score: 911
Period size: 72 Copynumber: 19.7 Consensus size: 73
7856325 GTGATCTGAA
** *
7856335 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGT
**
7856400 GTCTTGAG
66 GTCCCGAG
* * * * *
7856408 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTTAGCGT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGT
7856472 GTCCCGAG
66 GTCCCGAG
* * * * ** *
7856480 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAG-ATATAAATGGAAA-AGCAGAAA
1 GCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTGAAAGCAGA-AATTGAAAATACCTCAAC
* *
7856543 TTGAAATTACCTCAACG
64 GTG----T-CC-CGA-G
* * * * * * * * *
7856560 TGCCTTGAGGCTCA--ACTCAC-CTCTCGCAATATGAGTTGATTTTTGACAAACAGCAATTGAAA
1 -G-C-TCA-ACTCATTTCTCGCAATAT-G-AGT-TGA-TT--TTTT-GA-AAGCAGAAATTGAAA
* * *
7856622 TTACCTCAGCGTGTCCTGAG
54 ATACCTCAACGTGTCCCGAG
* * * * * **
7856642 GCTCAACTCATTTCTCGTAATATGAGTTGA-TTTTTGAAA-AATAGATTGAAACACAAAAATTGA
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTG--A-A-AATACCT--
* *
7856705 CAATAC-T-TCAGCGTG
60 C-A-ACGTGTC-CCGAG
* * * * * * *
7856720 CCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTGAAAACAAAAATTGAAAATACC
1 GCTC-A-ACTC-A-T---TTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATACC
*
7856784 TCAGCGTGT-CCGAG
59 TCAACGTGTCCCGAG
** ** * * *
7856798 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAATAGAAATTGAGATTACCTCAGCGT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGT
7856862 GTCCCGAG
66 GTCCCGAG
** * * *
7856870 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTG-AAAGCAGAAATTGAAAATACCTCAAC
* ***
7856935 ATGTCTTAAG
64 GTGTCCCGAG
* * * * *
7856945 GCTCAACTCATTTTTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGT
*
7857009 GTCCTGAG
66 GTCCCGAG
* * * *
7857017 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAACAGAAATTGAAATTACCTCAGCG
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAA-AGCAGAAATTGAAAATACCTCAACG
*
7857082 TGTCCTGAG
65 TGTCCCGAG
** * *
7857091 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAAC
1 GCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTGAAAG-CAGAAATTGAAAATACCTCAAC
***
7857156 GTGTCTTAAG
64 GTGTCCCGAG
* * * *
7857166 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGT
7857230 GTCCCGAG
66 GTCCCGAG
* ** * * *
7857238 ACTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGT
7857302 GTCCCGAG
66 GTCCCGAG
** * * *
7857310 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTG-AAAGCAGAAATTGAAAATACCTCAAC
* **
7857375 ATGTCTTGAG
64 GTGTCCCGAG
* * * *
7857385 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGT
*
7857449 GTCCTGAG
66 GTCCCGAG
* * * * * ** **
7857457 GCTCAACTCATTTCTTGTAATATGAGTTGATTTTTTTGAAA-AATAGATTG-AAATA-CAAAAAT
1 GCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTGAAAGCAGAAATTGAAAATACCTCAACG
*
7857519 TGACAATACCTCTGCG
65 TG----T-CC-C-GAG
* * * *
7857535 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAAT
1 -G-CTC-A-ACTC-A-T---TTCTCGCAATATGAGTTGATTTTTTG-AAAGCAGAAATTGAAAAT
* **
7857599 ACCTCAGCGTGTCTTGAG
56 ACCTCAACGTGTCCCGAG
**
7857617 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATAAATTGAACAGAAATT-AAA
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTG--------AAA--G--CAGAAATTGAAA
**
7857680 ACTACCTCAACGTGTCTTGAG
54 A-TACCTCAACGTGTCCCGAG
* *
7857701 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAAGAAGAAATTGAAAATACCTCAAT
1 GCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTG-AAAGCAGAAATTGAAAATACCTCAAC
**
7857766 GTGTCTTGAG
64 GTGTCCCGAG
** *
7857776 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTGAAA-CAGAAAT
1 GCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTGAAAGCAGAAAT
7857824 AAAAACATCA
Statistics
Matches: 1131, Mismatches: 192, Indels: 186
0.75 0.13 0.12
Matches are distributed among these distances:
71 59 0.05
72 349 0.31
73 98 0.09
74 104 0.09
75 241 0.21
76 10 0.01
77 7 0.01
78 26 0.02
79 15 0.01
80 18 0.02
81 9 0.01
82 17 0.02
83 11 0.01
84 68 0.06
85 33 0.03
86 19 0.02
87 24 0.02
88 13 0.01
89 10 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (73 bp):
GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGT
GTCCCGAG
Found at i:7857000 original size:147 final size:147
Alignment explanation
Indices: 7856687--7857816 Score: 1355
Period size: 147 Copynumber: 7.5 Consensus size: 147
7856677 GAAAAATAGA
* * * * *
7856687 TTGAAACACAAAAATTGACAA-TACTTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATG
1 TTGAAA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
7856751 AGTTGA--TTTTTG-AAAACAAAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTC
64 AGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
7856812 TCGCAATATGAGTTGATTT
129 TCGCAATATGAGTTGATTT
* * *
7856831 TTGAAAATAGAAATTGAGATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * ** *
7856896 TTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTTTC
66 TTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
*
7856961 GCAATATGAGTTGAATT
131 GCAATATGAGTTGATTT
**
7856978 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
7857043 TTGATTTTTTT-AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
66 TTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
*
7857107 GCAGTATGAGTTGATTTTT
131 GCAATATGAGTTGA--TTT
* * * * * **
7857126 TTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
7857191 GTTGA--ATTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGACTCAACTCACCTCT
65 GTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
7857253 CGCAATATGAGTTGATTT
130 CGCAATATGAGTTGATTT
*
7857271 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * **
7857336 TTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
66 TTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
*
7857401 GCAATATGAGTTGAATT
131 GCAATATGAGTTGATTT
** * *
7857418 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTTGTAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
7857483 TTGATTTTTTTGAAAAATAGATTGAAATACAAAAATTGACAATACCTCTGCGTGCCCCGAGGCTC
66 TTGA-TTTTTT------T-GA---AAA-ACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
7857548 AACTCACCTCTCGCAATATGAGTTGATTT
119 AACTCACCTCTCGCAATATGAGTTGATTT
* *
7857577 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
7857642 GTTGA--TTTTTGAAAAACATAAATTGAACAGAAATTAAAACTACCTCAACGTGTCTTGAGGCTC
65 GTTGATTTTTTTGAAAAACAAAAATT-----G-----AAAA-TACCTCAGCGTGTCCTGAGGCTC
**
7857705 AACTCATTTCTCGCAATATGAGTTGATTTTT
119 AACTCACCTCTCGCAATATGAGTTGA--TTT
* * ** *
7857736 TTGAAAAGAAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
7857801 GTTAATTTTTTTGAAA
65 GTTGATTTTTTTGAAA
7857817 CAGAAATAAA
Statistics
Matches: 855, Mismatches: 90, Indels: 65
0.85 0.09 0.06
Matches are distributed among these distances:
142 1 0.00
143 55 0.06
144 61 0.07
145 15 0.02
146 100 0.12
147 295 0.35
148 14 0.02
149 58 0.07
150 2 0.00
151 2 0.00
154 1 0.00
155 2 0.00
156 3 0.00
157 46 0.05
158 7 0.01
159 124 0.15
160 60 0.07
161 9 0.01
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (147 bp):
TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTT
Found at i:7857019 original size:72 final size:72
Alignment explanation
Indices: 7856687--7857823 Score: 1186
Period size: 72 Copynumber: 15.2 Consensus size: 72
7856677 GAAAAATAGA
* * * * *
7856687 TTGAAACACAAAAATTGACAA-TACTTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATG
1 TTGAAA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
7856751 AGTTGATTT
64 AGTTGATTT
* *
7856760 TTGAAAACAAAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
7856824 TTGATTT
66 TTGATTT
* * *
7856831 TTGAAAATAGAAATTGAGATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
7856896 TTGATTTTT
66 TTGA--TTT
* * * * * ** *
7856905 TTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTTTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
7856970 GTTGAATT
65 GTTGATTT
**
7856978 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
7857043 TTGATTTT
66 TTGA-TTT
* *
7857051 TTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGA
1 TTGAA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7857116 GTTGATTTTT
65 GTTGA--TTT
* * * * * **
7857126 TTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
7857191 GTTGAATT
65 GTTGATTT
* *
7857199 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
7857264 TTGATTT
66 TTGATTT
*
7857271 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
7857336 TTGATTTTT
66 TTGA--TTT
* * * * **
7857345 TTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
7857410 GTTGAATT
65 GTTGATTT
** * *
7857418 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTTGTAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
7857483 TTGATTTTT
66 TTGA--TTT
* * *** * ** * * *
7857492 TTGAAAA-ATAGATTGAAA-TACAAAAATTGACAATACCTCTGCGTGCCCCGAGGCTCAACTCAC
1 TTGAAAACAGAAATTGAAATTAC-CTCA--G-C-GTGTC-CTGAG-G-CTC-A---AC---TCAC
7857555 CTCTCGCAATATGAGTTGATTT
51 CTCTCGCAATATGAGTTGATTT
* *
7857577 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7857642 GTTGATTT
65 GTTGATTT
* * * **
7857650 TTGAAAAACATAAATTGAACAGAAATTAAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
1 TTG-AAAACAGAAATT-----GAAA-T-----TACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
7857715 TCGCAATATGAGTTGATTTTT
54 TCGCAATATGAGTTGA--TTT
* * ** *
7857736 TTGAAAAGAAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
7857801 GTTAATTTTT
65 GTTGA--TTT
7857811 TTG-AAACAGAAAT
1 TTGAAAACAGAAAT
7857824 AAAAACATCA
Statistics
Matches: 912, Mismatches: 106, Indels: 92
0.82 0.10 0.08
Matches are distributed among these distances:
71 68 0.07
72 304 0.33
73 87 0.10
74 86 0.09
75 231 0.25
76 2 0.00
77 2 0.00
78 8 0.01
79 2 0.00
80 4 0.00
81 6 0.01
82 3 0.00
83 2 0.00
84 48 0.05
85 11 0.01
86 16 0.02
87 29 0.03
88 3 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (72 bp):
TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:7857366 original size:440 final size:440
Alignment explanation
Indices: 7856531--7857816 Score: 1695
Period size: 440 Copynumber: 2.8 Consensus size: 440
7856521 GATATAAATG
* **
7856531 GAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 GAAAA-CAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCATTTCTCGCAATATGAG
* * **
7856595 TTGA--TTTTTGACAAACAGCAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTC
64 TTGATTTTTTTAAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* * * * * *
7856658 GTAATATGAGTTGATTTTTGAAAAATAGATTGAAACACAAAAATTGACAATACTTCAGCGTGCCC
128 GCAATATGAGTTGA-TTTT------T---TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCT
* * *
7856723 CGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAAATACCTCAG
183 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAATTACCTCAG
* *
7856788 CGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAAATTGAGATT
248 CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAGAAATTGAAATT
7856852 ACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAA
313 ACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAA
*
7856917 AATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTTTCGCAATATGAGTTGAATTTT
378 AATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
7856980 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
7857045 GATTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
66 GATTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* * * *
7857110 GTATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTC
131 ATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTC
** * * *
7857175 ATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGAC
196 ACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGC
*
7857240 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
261 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAGAAATTGAAATTACCTCAGCGTGTC
7857305 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACC
326 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACC
*
7857370 TCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
391 TCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
* *
7857420 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTTGTAATATGAGTT
1 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
* * * * *
7857485 GATTTTTTTGAAAAATAGATTGAAATACAAAAATTGACAA-TACCTCTGCGTGCCCCGAGGCTCA
66 GA-TTTTTT------T--A---ACA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCA
*
7857549 ACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTC
117 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTC
*
7857612 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATT
182 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAAAAATT-----GAAA-T
* ** **
7857677 AAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAA
240 -----TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA
* ** ** *
7857742 AGAAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
298 A-AAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
7857807 TTTTTTGAAA
362 TTTTTTGAAA
7857817 CAGAAATAAA
Statistics
Matches: 747, Mismatches: 57, Indels: 49
0.88 0.07 0.06
Matches are distributed among these distances:
439 92 0.12
440 247 0.33
441 6 0.01
442 1 0.00
447 1 0.00
448 60 0.08
449 67 0.09
450 7 0.01
451 72 0.10
452 13 0.02
453 55 0.07
454 2 0.00
457 4 0.01
458 1 0.00
463 43 0.06
465 10 0.01
466 66 0.09
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (440 bp):
GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
GATTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTC
ACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAGAAATTGAAATTACCTCAGCGTGTC
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACC
TCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
Found at i:7857551 original size:87 final size:86
Alignment explanation
Indices: 7857418--7857578 Score: 225
Period size: 87 Copynumber: 1.9 Consensus size: 86
7857408 GAGTTGAATT
* * * ** * *
7857418 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTTGTAATATGAG
1 TTGAAAACAAAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
7857483 TTGATTTTTTTGAAAAATAGA
66 TTGATTTTTTTGAAAAATAGA
*
7857504 TTGAAATACAAAAATTGACAA-TACCTCTGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAA-ACAAAAATTGA-AATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
7857568 AGTTGATTTTT
64 AGTTGATTTTT
7857579 GAAAAACAGA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
86 6 0.09
87 57 0.88
88 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (86 bp):
TTGAAAACAAAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAAATAGA
Found at i:7857594 original size:87 final size:85
Alignment explanation
Indices: 7857418--7857597 Score: 220
Period size: 87 Copynumber: 2.1 Consensus size: 85
7857408 GAGTTGAATT
* * * ** * *
7857418 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTTGTAATATGAG
1 TTGAAAACAAAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
7857483 TTGATTTTTTTGAAAAATAGA
66 TTGA-TTTTTTGAAAAACAGA
*
7857504 TTGAAATACAAAAATTGACAA-TACCTCTGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAA-ACAAAAATTGA-AATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
7857568 AGTTGA-TTTTTGAAAAACAGAAA
64 AGTTGATTTTTTGAAAAACAG--A
7857591 TTGAAAA
1 TTGAAAA
7857598 TACCTCAGCG
Statistics
Matches: 81, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
85 13 0.16
86 7 0.09
87 59 0.73
88 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30
Consensus pattern (85 bp):
TTGAAAACAAAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAAAACAGA
Found at i:7857724 original size:84 final size:77
Alignment explanation
Indices: 7857541--7857810 Score: 338
Period size: 84 Copynumber: 3.5 Consensus size: 77
7857531 TGCGTGCCCC
*
7857541 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT---GAAA-AACAGAAATTGAAAATACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAACAAAAGAACAGAAATTGAAAATACC
*
7857602 TCAGCGTGTCTT
66 TCAACGTGTCTT
7857614 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATT-A
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT----AACA-AAA--GAACAGAAATTGA
7857678 AAACTACCTCAACGTGTCTT
59 AAA-TACCTCAACGTGTCTT
** ***
7857698 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAAG-A-AGAAATTGAAAATACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAACAAAAGAACAGAAATTGAAAATACC
*
7857761 TCAATGTGTCTT
66 TCAACGTGTCTT
*
7857773 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
7857811 TTGAAACAGA
Statistics
Matches: 173, Mismatches: 11, Indels: 24
0.83 0.05 0.12
Matches are distributed among these distances:
73 38 0.22
75 57 0.33
76 5 0.03
77 1 0.01
79 3 0.02
80 1 0.01
81 3 0.02
83 4 0.02
84 61 0.35
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (77 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAACAAAAGAACAGAAATTGAAAATACC
TCAACGTGTCTT
Found at i:7857818 original size:159 final size:156
Alignment explanation
Indices: 7857204--7857823 Score: 756
Period size: 159 Copynumber: 4.0 Consensus size: 156
7857194 GAATTTTGAA
* * *
7857204 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
7857269 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGAAAAAAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
7857334 AGTTGATTTTTTTG------AAA---
131 AGTTGATTTTTTTGAAACATAAATTG
* ** ** *
7857351 AACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * ** * *
7857416 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTTGTAATATG
66 TTTTGAAAAAAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
7857481 AGTTGATTTTTTTGAAAAATAGATTG
131 AGTTGATTTTTTTGAAACATAAATTG
* * *
7857507 AAATACAAAAATTGACAATACCTCTGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 --A-ACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
7857572 GATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAA
63 GATTTTTGAAAAA-AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
***
7857637 TATGAGTTGATTTTTGAAAAACATAAATTG
127 TATGAGTTGATTTTTTTGAAACATAAATTG
* * ** **
7857667 AACAGAAATT-AAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AACAAAAATTGAAAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
** *
7857731 TTTTTTTGAAAAGAAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAA
65 --TTTTTGAAAA-AAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* *
7857796 TATGAGTTAATTTTTTTGAAACAGAAAT
127 TATGAGTTGATTTTTTTGAAACATAAAT
7857824 AAAAACATCA
Statistics
Matches: 404, Mismatches: 52, Indels: 22
0.85 0.11 0.05
Matches are distributed among these distances:
147 130 0.32
153 2 0.00
156 3 0.01
157 50 0.12
158 2 0.00
159 146 0.36
160 71 0.18
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (156 bp):
AACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAAAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAAACATAAATTG
Found at i:7867921 original size:18 final size:18
Alignment explanation
Indices: 7867879--7867923 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
7867869 GAAAAATGAG
7867879 AATTTTT-AAAACACGAA
1 AATTTTTGAAAACACGAA
7867896 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
7867913 AATTTTTGAAA
1 AATTTTTGAAA
7867924 CCTGAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.15
17 14 0.54
18 8 0.31
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:7868549 original size:15 final size:17
Alignment explanation
Indices: 7868529--7868560 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
7868519 TTAGGAAACG
7868529 TACATAA-A-AAATATA
1 TACATAATATAAATATA
7868544 TACATAATATAAATATA
1 TACATAATATAAATATA
7868561 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:7869298 original size:29 final size:29
Alignment explanation
Indices: 7869266--7869334 Score: 131
Period size: 29 Copynumber: 2.4 Consensus size: 29
7869256 AACAACACAC
7869266 AAAAA-AAAAAAGATTCGAAAGAAGAGGA
1 AAAAAGAAAAAAGATTCGAAAGAAGAGGA
7869294 AAAAAGAAAAAAGATTCGAAAGAAGAGGA
1 AAAAAGAAAAAAGATTCGAAAGAAGAGGA
7869323 AAAAAGAAAAAA
1 AAAAAGAAAAAA
7869335 TGCAACCTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.71, C:0.03, G:0.20, T:0.06
Consensus pattern (29 bp):
AAAAAGAAAAAAGATTCGAAAGAAGAGGA
Found at i:7870013 original size:48 final size:48
Alignment explanation
Indices: 7869928--7870108 Score: 229
Period size: 48 Copynumber: 3.8 Consensus size: 48
7869918 TAGGGTTATG
* * * *
7869928 TGTGATCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGAGATATGGCATTGGCATCGATA
* * *
7869976 TGTGATCCCATGAAAGACCATATCTGAGATATAGCATTGGAATCGATA
1 TGTGATCCCATGTAAGACCATATCTGAGATATGGCATTGGCATCGATA
7870024 TGTGATCCCATGTAAGACCATATCT-AGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGA-GATATGGCATTGGCATCGATA
** * * * *
7870072 TGTGATTTCATGTAAGACTATGTCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATATCTGAGATATGGCAT
7870109 CAATATGAGA
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
47 1 0.01
48 114 0.99
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATCTGAGATATGGCATTGGCATCGATA
Found at i:7875507 original size:32 final size:32
Alignment explanation
Indices: 7875471--7875531 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
7875461 ATATAAAATA
7875471 AGTTGCAACTAACAATATATATTAACATAGCG
1 AGTTGCAACTAACAATATATATTAACATAGCG
*
7875503 AGTTGCAACTAACAATATATTTTAACATA
1 AGTTGCAACTAACAATATATATTAACATA
7875532 AAATTTATCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (32 bp):
AGTTGCAACTAACAATATATATTAACATAGCG
Found at i:7875681 original size:23 final size:23
Alignment explanation
Indices: 7875616--7875681 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 23
7875606 ATTATTCAAC
* *
7875616 TAATTATAT-TTAAAAATATTTA
1 TAATTATATATTTAATATATTTA
* * *
7875638 TATTTATA-ATTTACATTTATTTT
1 TAATTATATATTTA-ATATATTTA
7875661 TAATTATATATTTAATATATT
1 TAATTATATATTTAATATATT
7875682 AATACTAACA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
22 10 0.29
23 19 0.56
24 5 0.15
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (23 bp):
TAATTATATATTTAATATATTTA
Found at i:7878837 original size:5 final size:6
Alignment explanation
Indices: 7878820--7878849 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
7878810 TTGTCTTCTC
7878820 TCTTTT TCTTTT TCTTTT TCATTTT TCTTT
1 TCTTTT TCTTTT TCTTTT TC-TTTT TCTTT
7878850 GGTTAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (6 bp):
TCTTTT
Found at i:7878837 original size:12 final size:13
Alignment explanation
Indices: 7878820--7878849 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7878810 TTGTCTTCTC
7878820 TCTTTTTC-TTTT
1 TCTTTTTCATTTT
7878832 TCTTTTTCATTTT
1 TCTTTTTCATTTT
7878845 TCTTT
1 TCTTT
7878850 GGTTAGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (13 bp):
TCTTTTTCATTTT
Found at i:7885506 original size:24 final size:24
Alignment explanation
Indices: 7885474--7885523 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
7885464 TGAGTTGAGC
7885474 TCTGCCTTGATTGGTCGCACTAAG
1 TCTGCCTTGATTGGTCGCACTAAG
7885498 TCTGCCTTGATTGGTCGCACTAAG
1 TCTGCCTTGATTGGTCGCACTAAG
7885522 TC
1 TC
7885524 AACTTGGACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.16, C:0.26, G:0.24, T:0.34
Consensus pattern (24 bp):
TCTGCCTTGATTGGTCGCACTAAG
Found at i:7886053 original size:17 final size:17
Alignment explanation
Indices: 7886002--7886054 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
7885992 AAATGAAAAT
7886002 AATTATTAAAA-TTCAAA
1 AATTA-TAAAATTTCAAA
* * * *
7886019 ATTTATATATTTTTAAA
1 AATTATAAAATTTCAAA
7886036 AATTATAAAATTTCAAA
1 AATTATAAAATTTCAAA
7886053 AA
1 AA
7886055 AAATTCTAAA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
16 3 0.11
17 24 0.89
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTATAAAATTTCAAA
Found at i:7887291 original size:223 final size:223
Alignment explanation
Indices: 7886915--7887348 Score: 561
Period size: 223 Copynumber: 1.9 Consensus size: 223
7886905 TAACATCTCT
*
7886915 TTTTCAGTGAAATCAGAACAGTGGTTTCAGGACCACAAATCCAAAGTCGGAAGAAAATTTATTTT
1 TTTTCAGTGAAATCAGAACAGTGGTTTCAGGACCACAAATCCAAAGTCGAAAGAAAATTTATTTT
* * * * *
7886980 AATATTATTTTATGGTTTATAGTATGATAAAAATATCGTATGAAAATTTCGTTAAGAAATTTTAC
66 AATATTATTTCATGGTCTACAGTATGATAAAAATATCCTATAAAAATTTCGTTAAGAAATTTTAC
** * * * *
7887045 CGTTTACATGCCTAGCTTGATAAAAAGGACTAAATTGTATAAAGTGCAAAAGTTAAATTCTAGTA
131 AATTTACATGCCTAGCTTGATAAAAAGGACCAAATTGCATAAAATACAAAAGTTAAATTCTAGTA
*
7887110 GCTAAAGATATCAAATTGTAACAGCTTG
196 GCTAAAGATACCAAATTGTAACAGCTTG
* * **
7887138 TTTTCAGTGAATTTAGAACAGTGGTTTCAGGACCACAAATCTGAA-TCCGAAAG-AAATATTATT
1 TTTTCAGTGAAATCAGAACAGTGGTTTCAGGACCACAAATCCAAAGT-CGAAAGAAAAT-TTATT
* * * * *
7887201 TTAATATTATTTCATGGTCTGCATTATGATAGAACTATCCTATAAAAATTTTGTTAAGAAATTTT
64 TTAATATTATTTCATGGTCTACAGTATGATAAAAATATCCTATAAAAATTTCGTTAAGAAATTTT
* * * *
7887266 ACTAATTT-CATGTCTA-ATCTGATAAAAATGACCAAATTGCATAAAATACAAAAGTTGAATTCT
129 AC-AATTTACATGCCTAGCT-TGATAAAAAGGACCAAATTGCATAAAATACAAAAGTTAAATTCT
*
7887329 AGTAGCTAAAGGTACCAAAT
192 AGTAGCTAAAGATACCAAAT
7887349 AGCTATGGAA
Statistics
Matches: 180, Mismatches: 27, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
222 6 0.03
223 171 0.95
224 3 0.02
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (223 bp):
TTTTCAGTGAAATCAGAACAGTGGTTTCAGGACCACAAATCCAAAGTCGAAAGAAAATTTATTTT
AATATTATTTCATGGTCTACAGTATGATAAAAATATCCTATAAAAATTTCGTTAAGAAATTTTAC
AATTTACATGCCTAGCTTGATAAAAAGGACCAAATTGCATAAAATACAAAAGTTAAATTCTAGTA
GCTAAAGATACCAAATTGTAACAGCTTG
Found at i:7888142 original size:25 final size:25
Alignment explanation
Indices: 7888072--7888142 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
7888062 TTGGCTCTCT
*
7888072 TGAGCTTCCTGTT-TATGGCTCGTA
1 TGAGCTTCCTATTATATGGCTCGTA
* *
7888096 TGAGCTTCCTGATAAT-TAGCTCGTA
1 TGAGCTTCCT-ATTATATGGCTCGTA
*
7888121 TGGGCTTCCTATTATATGGCTC
1 TGAGCTTCCTATTATATGGCTC
7888143 AAAAGAGCTT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
24 14 0.37
25 23 0.61
26 1 0.03
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.39
Consensus pattern (25 bp):
TGAGCTTCCTATTATATGGCTCGTA
Found at i:7892542 original size:19 final size:20
Alignment explanation
Indices: 7892502--7892544 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
7892492 GAAATACATT
*
7892502 TGTA-AAAATAATAATCATA
1 TGTATAAAATAATAATCACA
7892521 TGTATAAAATAATAAT-ACA
1 TGTATAAAATAATAATCACA
7892540 TGTAT
1 TGTAT
7892545 TGCTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (20 bp):
TGTATAAAATAATAATCACA
Found at i:7892601 original size:22 final size:22
Alignment explanation
Indices: 7892578--7892626 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7892568 ATTATATTAT
*
7892578 AACATAATAATAATAATATAATA
1 AACATAA-AATAAAAATATAATA
* *
7892601 AACATAAAATAAAAATAAAAGA
1 AACATAAAATAAAAATATAATA
7892623 AACA
1 AACA
7892627 AAAGAATAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.20
Consensus pattern (22 bp):
AACATAAAATAAAAATATAATA
Found at i:7903475 original size:25 final size:25
Alignment explanation
Indices: 7903447--7903539 Score: 114
Period size: 25 Copynumber: 3.7 Consensus size: 25
7903437 CCACAACTCT
*
7903447 CATGAGCTTCCCGATATTTGGCTCG
1 CATGAGCTTCCCGATATTTGGCTCA
* *
7903472 CATGAGCTTCCCGATATTTGGGTCT
1 CATGAGCTTCCCGATATTTGGCTCA
* * * *
7903497 CATAAGCTTCCCGTTACTTAGCTCA
1 CATGAGCTTCCCGATATTTGGCTCA
*
7903522 CATGAGCTTCCCGTTATT
1 CATGAGCTTCCCGATATT
7903540 CAGCTCGGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.34
Consensus pattern (25 bp):
CATGAGCTTCCCGATATTTGGCTCA
Found at i:7903505 original size:50 final size:50
Alignment explanation
Indices: 7903444--7903539 Score: 138
Period size: 50 Copynumber: 1.9 Consensus size: 50
7903434 ACACCACAAC
* * * *
7903444 TCTCATGAGCTTCCCGATATTTGGCTCGCATGAGCTTCCCGATATTTGGG
1 TCTCATAAGCTTCCCGATACTTAGCTCACATGAGCTTCCCGATATTTGGG
* *
7903494 TCTCATAAGCTTCCCGTTACTTAGCTCACATGAGCTTCCCGTTATT
1 TCTCATAAGCTTCCCGATACTTAGCTCACATGAGCTTCCCGATATT
7903540 CAGCTCGGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.35
Consensus pattern (50 bp):
TCTCATAAGCTTCCCGATACTTAGCTCACATGAGCTTCCCGATATTTGGG
Found at i:7911881 original size:478 final size:477
Alignment explanation
Indices: 7910980--7912023 Score: 1768
Period size: 478 Copynumber: 2.2 Consensus size: 477
7910970 GGCCAAGTTT
* * *
7910980 TTCTTCTCAGCTTCTG-CAGTCCTCAGCTTTTCAGCAAGATCATTCTTCTCTTGAGCTACTGCCT
1 TTCTTATCAGCTTCAGTCA-TCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTGCCT
*
7911044 GCATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCAGTTGGAAACATTT
65 GCATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTT
* * * *
7911109 TACAGCCAATAGAGGCTTTTGTCCTTCTGCGAAGATACTTTAGCAAGGACAACCAGGTCAGATGC
130 TACAGCCAATAGAGGCCTCTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGC
* *
7911174 AAAACAAAATTGAACTGAATGTGAAGTTTTAGATTTATGGTAGAAAGAACCATTATCATAACTAA
195 AAAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTAA
* *
7911239 GACCCAGAGAAAGTAAGAAGAAACAGACCTGCAAACTATTCAATTTCACTTCCAGCTCATCATTA
260 GACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
7911304 TAGTTCTTACAGCGTCCAAGCTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
325 TAGTTCTTACAGCGTCCAAGCTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
*
7911369 TTGCTTCAACGTCTGCACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCTG
390 TTGCTTCAACATCTGCACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCTG
* *
7911434 TTCTCAATTCTTCGACGAATCTG
455 TTCTCAATTCTTCAACGAAGCTG
*
7911457 TTCTTATCAGCTTCAGTCTTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTGCCTG
1 TTCTTATCAGCTTCAGTCATCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTGCCTG
7911522 CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
66 CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
* *
7911587 ACAGCCTATAGAGGCCTCTGTCCTTCTGCGAGGATAATCTAGCAAGGACAACCAGGTCAGATGCA
131 ACAGCCAATAGAGGCCTCTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGCA
* **
7911652 AAACAAAAATTGAACTGAATTTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTTG
196 AAAC-AAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTAA
*
7911717 GATCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
260 GACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
** * *
7911782 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTGTCCTGTTTCTCTCTTTTGATCTGCTTAAGTTC
325 TAGTTCTTACAGCGTCCAAGCTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
*
7911847 TTGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCTG
390 TTGCTTCAACATCTGCACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCTG
*
7911912 TTCTCAATTCTTCAACGAGGCTG
455 TTCTCAATTCTTCAACGAAGCTG
* * * *
7911935 TTCTTATCAGCTTCGGTGATCCTCAGCTTTTTAGCAAGATAATTCTTCTCTTGAGCTACTTCCTG
1 TTCTTATCAGCTTCAGTCATCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTGCCTG
7912000 CATCATTTAAGTTTT-ACCTCAGTA
66 CATCATTTAAGTTTTCACCTCAGTA
7912024 CGATAAACAA
Statistics
Matches: 532, Mismatches: 33, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
477 195 0.37
478 337 0.63
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (477 bp):
TTCTTATCAGCTTCAGTCATCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTGCCTG
CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
ACAGCCAATAGAGGCCTCTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGCA
AAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTAAG
ACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTAT
AGTTCTTACAGCGTCCAAGCTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTCT
TGCTTCAACATCTGCACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCTGT
TCTCAATTCTTCAACGAAGCTG
Found at i:7916398 original size:6 final size:6
Alignment explanation
Indices: 7916382--7916412 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
7916372 GGAAAGCGTC
7916382 AGGGCCA AGGGCA AGGGCA AGGGCA AGGGCA
1 AGGG-CA AGGGCA AGGGCA AGGGCA AGGGCA
7916413 TCGCTTCCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.32, C:0.19, G:0.48, T:0.00
Consensus pattern (6 bp):
AGGGCA
Found at i:7923622 original size:43 final size:43
Alignment explanation
Indices: 7923528--7923723 Score: 272
Period size: 43 Copynumber: 4.6 Consensus size: 43
7923518 TTCGACGAAC
* *
7923528 TCGCACACTTAGTGCTAATTAATTAACC-AAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
*
7923570 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCCATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* * *
7923613 TTGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTATA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* * *
7923656 TTGCACACTTAGTGCCAACTT-AGTAGCCGAAACTATAATTGTA
1 TCGCACACTTAGTGCCAA-TTAATTAGCCGAAGCTATAATTGTA
7923699 TCGCACACTTAGTGCC-ATTACATTA
1 TCGCACACTTAGTGCCAATTA-ATTA
7923724 AACTGAACTT
Statistics
Matches: 137, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
41 2 0.01
42 27 0.20
43 106 0.77
44 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
Found at i:7929784 original size:43 final size:43
Alignment explanation
Indices: 7929690--7929885 Score: 281
Period size: 43 Copynumber: 4.6 Consensus size: 43
7929680 TTCGACGAAC
* *
7929690 TCGCACACTTAGTGCTAATTAATTAACC-AAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
*
7929732 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCCATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* * *
7929775 TTGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTATA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* *
7929818 TCGCACACTTAGTGCCAACTT-AGTAGCCGAAACTATAATTGTA
1 TCGCACACTTAGTGCCAA-TTAATTAGCCGAAGCTATAATTGTA
7929861 TCGCACACTTAGTGCC-ATTACATTA
1 TCGCACACTTAGTGCCAATTA-ATTA
7929886 AACTGAACTT
Statistics
Matches: 137, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
41 2 0.01
42 27 0.20
43 106 0.77
44 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.31
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
Found at i:7931273 original size:7 final size:6
Alignment explanation
Indices: 7931232--7931272 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
7931222 ATAATTTAAT
*
7931232 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
7931273 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:7931273 original size:20 final size:20
Alignment explanation
Indices: 7931235--7931274 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7931225 ATTTAATAAA
**
7931235 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
7931255 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
7931275 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:7931330 original size:27 final size:27
Alignment explanation
Indices: 7931292--7931351 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
7931282 TTTATACAAA
*
7931292 TAATTTGGTTAATTCGATTAATTTGGG
1 TAATTTGGTTAATTCGATTAATTAGGG
*
7931319 TAATTTGGTTAATTCGATTAATTAGGT
1 TAATTTGGTTAATTCGATTAATTAGGG
7931346 TAATTT
1 TAATTT
7931352 TATACTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.28, C:0.03, G:0.18, T:0.50
Consensus pattern (27 bp):
TAATTTGGTTAATTCGATTAATTAGGG
Found at i:7931348 original size:9 final size:9
Alignment explanation
Indices: 7931292--7931351 Score: 66
Period size: 9 Copynumber: 6.7 Consensus size: 9
7931282 TTTATACAAA
7931292 TAATTTGGT
1 TAATTTGGT
* *
7931301 TAATTCGAT
1 TAATTTGGT
*
7931310 TAATTTGGG
1 TAATTTGGT
7931319 TAATTTGGT
1 TAATTTGGT
* *
7931328 TAATTCGAT
1 TAATTTGGT
*
7931337 TAATTAGGT
1 TAATTTGGT
7931346 TAATTT
1 TAATTT
7931352 TATACTTATT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.28, C:0.03, G:0.18, T:0.50
Consensus pattern (9 bp):
TAATTTGGT
Found at i:7934773 original size:50 final size:49
Alignment explanation
Indices: 7934713--7934808 Score: 120
Period size: 49 Copynumber: 1.9 Consensus size: 49
7934703 ATAAATTTAA
* * * * *
7934713 CCCTCGACATTTATATATTGTGTCAATTTAGTAATGATTTAAAAAAAAAT
1 CCCTCAACATTTATAAATTATCT-AATTTAATAATGATTTAAAAAAAAAT
**
7934763 CCCTCAACATTTATAAATTATCTAATTTAATTCTGATTTAAAAAAA
1 CCCTCAACATTTATAAATTATCTAATTTAATAATGATTTAAAAAAA
7934809 TAAAAAAATA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
49 20 0.51
50 19 0.49
ACGTcount: A:0.42, C:0.14, G:0.06, T:0.39
Consensus pattern (49 bp):
CCCTCAACATTTATAAATTATCTAATTTAATAATGATTTAAAAAAAAAT
Found at i:7935045 original size:31 final size:31
Alignment explanation
Indices: 7935010--7935086 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
7935000 TATTATATAC
** **
7935010 TTTTATCATTTTAGTAACTTTTGTTTCATAA
1 TTTTATCATTTTAGTAACCATCATTTCATAA
*
7935041 TTTTATCATTTTAATAACCATCATTTCATAA
1 TTTTATCATTTTAGTAACCATCATTTCATAA
7935072 TTTTATCATTTTAGT
1 TTTTATCATTTTAGT
7935087 CATCCGCCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.56
Consensus pattern (31 bp):
TTTTATCATTTTAGTAACCATCATTTCATAA
Found at i:7941684 original size:138 final size:138
Alignment explanation
Indices: 7941532--7941849 Score: 609
Period size: 138 Copynumber: 2.3 Consensus size: 138
7941522 AAATGCATAC
7941532 GCCACCTAATTATAAAATTTTACAATTTAGTCACTAACATTTTAGGAAAATTATAAAAAAAATTA
1 GCCACCTAATTATAAAATTTTACAATTTAGTCACTAACATTTTAGGAAAATTATAAAAAAAATTA
*
7941597 TAAATAAATGAATACCCATTTCTAGGGTAAACTATAGAATTAGCCAACCAACTATTAGCATGTTT
66 TAAACAAATGAATACCCATTTCTAGGGTAAACTATAGAATTAGCCAACCAACTATTAGCATGTTT
7941662 CTATTTAA
131 CTATTTAA
7941670 GCCACCTAATTATAAAATTTTACAATTTAGTCACTAACATTTTAGGAAAATTATAAAAAAAATTA
1 GCCACCTAATTATAAAATTTTACAATTTAGTCACTAACATTTTAGGAAAATTATAAAAAAAATTA
* *
7941735 TAAACAAATGAATACCCATTTCTAGGGTAAACTATAGAATTAGTCAACCAACTATTAGCGTGTTT
66 TAAACAAATGAATACCCATTTCTAGGGTAAACTATAGAATTAGCCAACCAACTATTAGCATGTTT
7941800 CTATTTAA
131 CTATTTAA
7941808 GCCACCTAATTATAAAATTTTACAATTTAGTCACTAACATTT
1 GCCACCTAATTATAAAATTTTACAATTTAGTCACTAACATTT
7941850 CAGGTCATTT
Statistics
Matches: 177, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
138 177 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.34
Consensus pattern (138 bp):
GCCACCTAATTATAAAATTTTACAATTTAGTCACTAACATTTTAGGAAAATTATAAAAAAAATTA
TAAACAAATGAATACCCATTTCTAGGGTAAACTATAGAATTAGCCAACCAACTATTAGCATGTTT
CTATTTAA
Found at i:7942302 original size:17 final size:17
Alignment explanation
Indices: 7942280--7942312 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7942270 AATATATCTC
*
7942280 TAAAAAATTAAAAATAT
1 TAAAAAATAAAAAATAT
7942297 TAAAAAATAAAAAATA
1 TAAAAAATAAAAAATA
7942313 AATCTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAAAAATAAAAAATAT
Found at i:7944805 original size:40 final size:40
Alignment explanation
Indices: 7944707--7944814 Score: 103
Period size: 40 Copynumber: 2.7 Consensus size: 40
7944697 TGTCTATATT
* * * * *
7944707 TTTGCACTTCGGTGCACTTGTTTACATTTCGGTGTCCTTA
1 TTTGCACTTCGGTGCCCCTGTTTACACTTCAGTGTCCATA
* * *
7944747 ATTGCAC-TCTGGTGCCCCTGTTTACACTTCAGTGTTCATG
1 TTTGCACTTC-GGTGCCCCTGTTTACACTTCAGTGTCCATA
*
7944787 TTTGCACTTCGGTACCCCT-TTTAGCACT
1 TTTGCACTTCGGTGCCCCTGTTTA-CACT
7944815 ACGATACTCC
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
39 6 0.11
40 47 0.85
41 2 0.04
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.41
Consensus pattern (40 bp):
TTTGCACTTCGGTGCCCCTGTTTACACTTCAGTGTCCATA
Found at i:7947115 original size:59 final size:59
Alignment explanation
Indices: 7947035--7947152 Score: 182
Period size: 59 Copynumber: 2.0 Consensus size: 59
7947025 AGATGGAAGA
*
7947035 AACCCTCCTCACATTGCAGCCATGAAAGAGTTGATTCAAGCCAGACCCTAGTCAGCACG
1 AACCCTCCTCACATTGCAGCCATGAAAGAGTTGATTCAAGCCAGACCCTAGGCAGCACG
* * * * *
7947094 AACCCTCTTCACATTGTAGCCATGAAAGAGTTTATTCATGCCAGACCCTGGGCAGCACG
1 AACCCTCCTCACATTGCAGCCATGAAAGAGTTGATTCAAGCCAGACCCTAGGCAGCACG
7947153 GTTGCCGATG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (59 bp):
AACCCTCCTCACATTGCAGCCATGAAAGAGTTGATTCAAGCCAGACCCTAGGCAGCACG
Found at i:7949944 original size:2 final size:2
Alignment explanation
Indices: 7949937--7949977 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7949927 AAATTTTTGC
7949937 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7949978 TAGGCCATTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7960109 original size:5 final size:5
Alignment explanation
Indices: 7960099--7960125 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7960089 GAAAATTTTA
7960099 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
7960126 CACAAATTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:7964529 original size:5 final size:5
Alignment explanation
Indices: 7964519--7964545 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7964509 TATGTTTTTA
7964519 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
7964546 CACAGGTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:7969917 original size:23 final size:23
Alignment explanation
Indices: 7969891--7969963 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
7969881 AAATTATGAT
7969891 AAAGATGAGTAAGACCATAGCTA
1 AAAGATGAGTAAGACCATAGCTA
* * *
7969914 AAAGATG-TTATGA-CATCATGATA
1 AAAGATGAGTAAGACCAT-A-GCTA
* *
7969937 GAAG-TTAGTAAGACCATAGCTA
1 AAAGATGAGTAAGACCATAGCTA
7969959 AAAGA
1 AAAGA
7969964 CACTATGACA
Statistics
Matches: 36, Mismatches: 9, Indels: 10
0.65 0.16 0.18
Matches are distributed among these distances:
21 3 0.08
22 12 0.33
23 18 0.50
24 3 0.08
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.22
Consensus pattern (23 bp):
AAAGATGAGTAAGACCATAGCTA
Found at i:7969947 original size:45 final size:46
Alignment explanation
Indices: 7969852--7969963 Score: 156
Period size: 45 Copynumber: 2.5 Consensus size: 46
7969842 CGCCAAAATA
* * *
7969852 AGTAAGACCATAACTGAAAGATGTTTATGAAATTATGATAAAGATG
1 AGTAAGACCATAGCTAAAAGATGTTTATGAAATCATGATAAAGATG
* *
7969898 AGTAAGACCATAGCTAAAAGATG-TTATGACATCATGATAGAAG-TT
1 AGTAAGACCATAGCTAAAAGATGTTTATGAAATCATGATA-AAGATG
7969943 AGTAAGACCATAGCTAAAAGA
1 AGTAAGACCATAGCTAAAAGA
7969964 CACTATGACA
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
45 36 0.60
46 24 0.40
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.25
Consensus pattern (46 bp):
AGTAAGACCATAGCTAAAAGATGTTTATGAAATCATGATAAAGATG
Found at i:7970011 original size:27 final size:27
Alignment explanation
Indices: 7969979--7970039 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
7969969 TGACATCCTT
*
7969979 TGATAGTCCA-TCGGGACAATAAACACA
1 TGATAGTCCACT-GGGACAATAAAAACA
* *
7970006 TTATAGTCCACTGTGACAATAAAAACA
1 TGATAGTCCACTGGGACAATAAAAACA
7970033 TGATAGT
1 TGATAGT
7970040 TCGCCGAGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (27 bp):
TGATAGTCCACTGGGACAATAAAAACA
Found at i:7978814 original size:13 final size:12
Alignment explanation
Indices: 7978789--7978829 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
7978779 GAGATTTTGC
*
7978789 TTTCGTTTTTTT
1 TTTCCTTTTTTT
7978801 TTTCCTTTTCTTT
1 TTTCCTTTT-TTT
*
7978814 TTTCCTCTTTTT
1 TTTCCTTTTTTT
7978826 TTTC
1 TTTC
7978830 TTTGAAGTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 15 0.58
13 11 0.42
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (12 bp):
TTTCCTTTTTTT
Found at i:7979605 original size:27 final size:27
Alignment explanation
Indices: 7979575--7979630 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
7979565 ATCAGTAATT
* *
7979575 TTGTAAAAAAATTAGCAATTTACAATG
1 TTGTAAAAAAATCAACAATTTACAATG
* * *
7979602 TTGTAAGAATATCAATAATTTACAATG
1 TTGTAAAAAAATCAACAATTTACAATG
7979629 TT
1 TT
7979631 ATAAGAAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.38
Consensus pattern (27 bp):
TTGTAAAAAAATCAACAATTTACAATG
Found at i:7981195 original size:19 final size:18
Alignment explanation
Indices: 7981155--7981223 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 18
7981145 ACATTGCAAT
*
7981155 ATTT-TAAAAGATTCAGTAA
1 ATTTGTAAAA-ATTTAGT-A
7981174 ATTTGTAAGAAATTTAGTA
1 ATTTGTAA-AAATTTAGTA
* *
7981193 ATTTGTCAAAAGTTTTGTA
1 ATTTGT-AAAAATTTAGTA
7981212 ATTTAGTAAAAA
1 ATTT-GTAAAAA
7981224 ATACACTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
19 27 0.64
20 13 0.31
21 2 0.05
ACGTcount: A:0.43, C:0.03, G:0.13, T:0.41
Consensus pattern (18 bp):
ATTTGTAAAAATTTAGTA
Found at i:7986441 original size:21 final size:21
Alignment explanation
Indices: 7986417--7986459 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
7986407 AGCATCACGT
*
7986417 GTTAAG-CTAAAATTATTATGG
1 GTTAAGCCT-AAATTACTATGG
7986438 GTTAAGCCTAAATTACTATGG
1 GTTAAGCCTAAATTACTATGG
7986459 G
1 G
7986460 AAAAATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (21 bp):
GTTAAGCCTAAATTACTATGG
Found at i:7987585 original size:20 final size:20
Alignment explanation
Indices: 7987560--7987597 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7987550 ATATATATAC
*
7987560 AATATAAAAATATATAAAAG
1 AATATAAAAATAAATAAAAG
*
7987580 AATATAAATATAAATAAA
1 AATATAAAAATAAATAAA
7987598 GTGAGTAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
AATATAAAAATAAATAAAAG
Found at i:7987658 original size:12 final size:13
Alignment explanation
Indices: 7987640--7987688 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
7987630 AAAAAATATG
7987640 ATATTTAATAATA
1 ATATTTAATAATA
7987653 AT-TTTAA-AATA
1 ATATTTAATAATA
*
7987664 GTATTTAATATATA
1 ATATTTAATA-ATA
*
7987678 ATATATAATAA
1 ATATTTAATAA
7987689 CAAATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:7987687 original size:24 final size:24
Alignment explanation
Indices: 7987632--7987685 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 24
7987622 CTTATAATAA
*
7987632 AAAATATGATATTTAATAATAATTTT
1 AAAATA-G-TATTTAATAATAATTAT
7987658 AAAATAGTATTTAATATATAATATAT
1 AAAATAGTATTTAATA-ATAAT-TAT
7987684 AA
1 AA
7987686 TAACAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 9 0.36
25 6 0.24
26 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
AAAATAGTATTTAATAATAATTAT
Found at i:7987722 original size:21 final size:22
Alignment explanation
Indices: 7987684--7987724 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7987674 TATAATATAT
* *
7987684 AATAACAAATTTTTTATAAAGG
1 AATAACAAATTATATATAAAGG
7987706 AATAAC-AATTATATATAAA
1 AATAACAAATTATATATAAA
7987725 ATAAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (22 bp):
AATAACAAATTATATATAAAGG
Found at i:7987814 original size:2 final size:2
Alignment explanation
Indices: 7987803--7987835 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
7987793 ATGAAATAAT
*
7987803 TA TA TA -A TA TA TA TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7987836 AGTTTAGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:7988034 original size:18 final size:18
Alignment explanation
Indices: 7988003--7988133 Score: 60
Period size: 18 Copynumber: 7.1 Consensus size: 18
7987993 AATGATAACA
7988003 ATAT-ATAG-ATAAAAAT
1 ATATAATAGTATAAAAAT
7988019 ATATAATAGTAT-AAAAT
1 ATATAATAGTATAAAAAT
* * *
7988036 GACATAATAATATAAAATAA
1 -ATATAATAGTATAAAA-AT
*
7988056 ATATAATA-TATAATATAAA
1 ATATAATAGTATAA-A-AAT
7988075 AGTAT-ATATGTGA-AAATAAT
1 A-TATAATA-GT-ATAAA-AAT
*
7988095 ATATAATA-TATATAAAT
1 ATATAATAGTATAAAAAT
*
7988112 AATATGAATAATATATAAAAT
1 -ATAT-AATAGTATA-AAAAT
7988133 A
1 A
7988134 ATTATATATA
Statistics
Matches: 91, Mismatches: 7, Indels: 30
0.71 0.05 0.23
Matches are distributed among these distances:
16 4 0.04
17 13 0.14
18 24 0.26
19 24 0.26
20 18 0.20
21 7 0.08
22 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (18 bp):
ATATAATAGTATAAAAAT
Found at i:7988103 original size:22 final size:20
Alignment explanation
Indices: 7988039--7988152 Score: 78
Period size: 20 Copynumber: 5.7 Consensus size: 20
7988029 ATAAAATGAC
7988039 ATAATA-ATATAAAATAA-AT
1 ATAATATAT-TAAAATAATAT
* *
7988058 ATAATATA-TAATATAAAAGT
1 ATAATATATTAAAATAATA-T
* *
7988078 AT-ATATGTGAAAATAATAT
1 ATAATATATTAAAATAATAT
7988097 ATAATATA-TATAAATAATAT
1 ATAATATATTA-AAATAATAT
7988117 GAATAATATA-TAAAATAATTAT
1 --ATAATATATTAAAATAA-TAT
*
7988139 ATATATATAATAAA
1 ATA-ATATATTAAA
7988153 TAAAAATAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 19
0.75 0.07 0.18
Matches are distributed among these distances:
18 7 0.09
19 15 0.19
20 27 0.35
21 11 0.14
22 17 0.22
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
ATAATATATTAAAATAATAT
Found at i:7988150 original size:29 final size:30
Alignment explanation
Indices: 7988089--7988170 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 30
7988079 TATATGTGAA
*
7988089 AATAATATATAATAT-ATATAAATAATATG
1 AATAATATATAAAATAATATAAATAATATG
*
7988118 AATAATATATAAAATAAT-TATATATATAT-
1 AATAATATATAAAATAATATAAATA-ATATG
* *
7988147 AATAA-ATA-AAAATAAAACAAATAA
1 AATAATATATAAAATAATATAAATAA
7988171 CAATAAAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
27 8 0.18
28 7 0.16
29 24 0.53
30 6 0.13
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (30 bp):
AATAATATATAAAATAATATAAATAATATG
Found at i:7988161 original size:39 final size:38
Alignment explanation
Indices: 7988039--7988161 Score: 119
Period size: 42 Copynumber: 3.1 Consensus size: 38
7988029 ATAAAATGAC
7988039 ATAATAATATAAAATAA-ATATA-ATAT-ATAATATAAAA
1 ATAAT-ATATAAAATAATATATATATATAATAA-ATAAAA
* *
7988076 GTATATATGTGAAAATAATATATA-ATATATATAAATAATATGA
1 ATA-ATATAT-AAAATAATATATATATATA-ATAAATAA-A--A
7988119 ATAATATATAAAATAATTATATATATATAATAAATAAAA
1 ATAATATATAAAATAA-TATATATATATAATAAATAAAA
7988158 ATAA
1 ATAA
7988162 AACAAATAAC
Statistics
Matches: 72, Mismatches: 4, Indels: 18
0.77 0.04 0.19
Matches are distributed among these distances:
37 5 0.07
38 9 0.12
39 14 0.19
40 4 0.06
41 13 0.18
42 19 0.26
43 8 0.11
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (38 bp):
ATAATATATAAAATAATATATATATATAATAAATAAAA
Found at i:7992093 original size:4 final size:4
Alignment explanation
Indices: 7992084--7992112 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7992074 AGCAAACGTG
7992084 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
7992113 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:7992940 original size:47 final size:47
Alignment explanation
Indices: 7992876--7992986 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
7992866 GACATTGAGT
*
7992876 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
7992923 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
7992970 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
7992987 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:7998982 original size:12 final size:14
Alignment explanation
Indices: 7998951--7998986 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
7998941 ACTGTTTCCG
7998951 TGAA-ATTTATTCA
1 TGAATATTTATTCA
7998964 TGAATATTTATT-A
1 TGAATATTTATTCA
7998977 -GAATATTTAT
1 TGAATATTTAT
7998987 GAATTATAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.45
13 5 0.23
14 7 0.32
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (14 bp):
TGAATATTTATTCA
Found at i:7999334 original size:4 final size:4
Alignment explanation
Indices: 7999325--7999353 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7999315 AGCAAACGTG
7999325 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
7999354 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:8000179 original size:47 final size:47
Alignment explanation
Indices: 8000115--8000225 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
8000105 GACATTGAGT
* *
8000115 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTATTC
* * *
8000162 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTATTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
8000209 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
8000226 CTTATCCCGA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.93
48 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
Found at i:8002265 original size:39 final size:39
Alignment explanation
Indices: 8002175--8002265 Score: 96
Period size: 39 Copynumber: 2.3 Consensus size: 39
8002165 TAATTAACCG
* * * *
8002175 AATATAATAATTATAATTACCATAATTATAATAATGTTTG
1 AATA-AATAATTACAATTACAATAATTATAATAATGATTC
*
8002215 ACTGAAA-AATTACAATTACAATAATTATAATAAT-ATTC
1 AAT-AAATAATTACAATTACAATAATTATAATAATGATTC
8002253 AATACAATAATTA
1 AATA-AATAATTA
8002266 TAATAAGGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
37 1 0.02
38 6 0.14
39 30 0.71
40 4 0.10
41 1 0.02
ACGTcount: A:0.52, C:0.08, G:0.03, T:0.37
Consensus pattern (39 bp):
AATAAATAATTACAATTACAATAATTATAATAATGATTC
Found at i:8020015 original size:47 final size:45
Alignment explanation
Indices: 8019961--8020363 Score: 252
Period size: 47 Copynumber: 8.7 Consensus size: 45
8019951 GTATAATACT
* *
8019961 GATGCCATGTCCCAGATATAGTCTTACACTGGCTCATCTATCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC--TCAAGTC
* * * * *
8020008 GATGCCATGTCCCAAACATGGTCTTATACTGACACATCTCATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCA-AGTC
* * * *
8020054 GATG-CATGTCCTAGACATGGTCGTACACTAGCTCTCACATATCCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-GCT--CATCT-CAAGTC
* * * * * *
8020103 GATGGCATGTCTCAGACATAGTCTTACACTGACACTCTAT-ACATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTG--GCTC-ATCTCAAGTC
* * * *
8020150 GATGCCATGTCCCAGACATGGTCTTACATTGACACATCTCATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCA-AGTC
* * * *
8020196 GATG-CATGTCCTAGATAT-GTCTTACAC-GGACTTACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGG-C-T-CATCTC-AAGTC
* *
8020242 GGTG-CATGTCCCAGACAT-GTCTTACACTAGCTCTAGTCTCAA-TACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-A-TCTCAAGT--C
*
8020288 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACAATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCAA-GT---C
*
8020336 GATG-CATGTCTCAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
8020364 AGCACACAAA
Statistics
Matches: 284, Mismatches: 47, Indels: 51
0.74 0.12 0.13
Matches are distributed among these distances:
43 1 0.00
44 12 0.04
45 49 0.17
46 66 0.23
47 95 0.33
48 21 0.07
49 14 0.05
50 26 0.09
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCAAGTC
Done.