Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 302 of 433
Found at i:94296347 original size:29 final size:29
Alignment explanation
Indices: 94296314--94296378 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
94296304 GTGACGAGAT
94296314 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
94296343 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
94296372 CGGCACT
1 TGGCACT
94296379 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:94304086 original size:29 final size:29
Alignment explanation
Indices: 94304053--94304126 Score: 112
Period size: 29 Copynumber: 2.6 Consensus size: 29
94304043 GTGACGAGAT
94304053 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
94304082 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
94304111 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
94304127 AGCTCGAAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:94308204 original size:40 final size:40
Alignment explanation
Indices: 94308160--94308298 Score: 120
Period size: 40 Copynumber: 3.5 Consensus size: 40
94308150 TCTCGATTGT
* * * *
94308160 CTTCGGGACATAGCTCGGTTATAGTGATTCGCACAAATGC
1 CTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGC
* * *
94308200 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGC
* * * *
94308240 CTTCGGGA-ATTGACCCGGATT-TAGTCACTTAGCACAAAAGC
1 CTTCGGGACA-TAACCCGG-TTATAGTAAC-TCGCACAAATGC
* *
94308281 CTTCGGGACTTAGCCCGG
1 CTTCGGGACATAACCCGG
94308299 ATACCATTCG
Statistics
Matches: 79, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
40 53 0.67
41 26 0.33
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGC
Found at i:94308287 original size:41 final size:40
Alignment explanation
Indices: 94308190--94308300 Score: 132
Period size: 40 Copynumber: 2.8 Consensus size: 40
94308180 ATAGTGATTC
* * * *
94308190 GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTC
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTA
* *
94308230 GCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTA
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC-TA
* * *
94308271 GCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGAATTAACCCGGAT
94308301 ACCATTCGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 33 0.55
41 27 0.45
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTA
Found at i:94309090 original size:40 final size:40
Alignment explanation
Indices: 94309041--94309163 Score: 210
Period size: 40 Copynumber: 3.1 Consensus size: 40
94309031 CCAGCATGAT
* * *
94309041 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
94309081 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
94309121 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
94309161 TGC
1 TGC
94309164 GATACCTCAC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:94309173 original size:22 final size:22
Alignment explanation
Indices: 94309142--94309185 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
94309132 ACTTAGTCCG
94309142 GATACATCACTAGCACGAATGC
1 GATACATCACTAGCACGAATGC
*
94309164 GATACCTCACTAGCACGAATGC
1 GATACATCACTAGCACGAATGC
94309186 TCTTCGGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.30, G:0.18, T:0.18
Consensus pattern (22 bp):
GATACATCACTAGCACGAATGC
Found at i:94309199 original size:62 final size:62
Alignment explanation
Indices: 94309102--94309225 Score: 221
Period size: 62 Copynumber: 2.0 Consensus size: 62
94309092 ACTTAGTCCG
94309102 GATACATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
1 GATACATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
* * *
94309164 GATACCTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCTCACTAGCACGAATGC
1 GATACATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
94309226 TCTTCGGAAC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (62 bp):
GATACATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
Found at i:94309219 original size:40 final size:40
Alignment explanation
Indices: 94309164--94309247 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
94309154 GCACGAATGC
94309164 GATACCTCACTAGCACGAATGCTCTTCGGAACTTAGTCCG
1 GATACCTCACTAGCACGAATGCTCTTCGGAACTTAGTCCG
94309204 GATACCTCACTAGCACGAATGCTCTTCGGAACTTAGTCCG
1 GATACCTCACTAGCACGAATGCTCTTCGGAACTTAGTCCG
94309244 GATA
1 GATA
94309248 TATCACTCTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
GATACCTCACTAGCACGAATGCTCTTCGGAACTTAGTCCG
Found at i:94309238 original size:102 final size:102
Alignment explanation
Indices: 94309062--94309254 Score: 350
Period size: 102 Copynumber: 1.9 Consensus size: 102
94309052 ACCTAGCCCG
94309062 GATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCC
1 GATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCC
94309127 TCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
66 TCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
* * *
94309164 GATACCTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCTCACTAGCACGAATGCTCT
1 GATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCC
*
94309229 TCGGAACTTAGTCCGGATATATCACT
66 TCGGAACTTAGTCCGGATACATCACT
94309255 CTCAATTCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 87 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (102 bp):
GATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCC
TCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
Found at i:94311143 original size:36 final size:36
Alignment explanation
Indices: 94311079--94311164 Score: 129
Period size: 36 Copynumber: 2.3 Consensus size: 36
94311069 TACGAAGTCT
94311079 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
94311115 GTACCCGGACGTAATCT-CACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
94311151 TCACCCGGAACATA
1 T-ACCCGG-ACATA
94311165 TTTCTAAGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
35 1 0.02
36 25 0.56
37 19 0.42
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:94311299 original size:49 final size:49
Alignment explanation
Indices: 94311233--94311682 Score: 762
Period size: 49 Copynumber: 9.2 Consensus size: 49
94311223 TTTACCACAT
*
94311233 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* **
94311282 ATATGTATACACTTTCACATTCATCAGGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
94311331 ATATAT-TCACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
94311380 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
94311429 ATATAT-TCACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
94311478 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
94311527 ATATAT-TCACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
94311576 ATATATACACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
94311625 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
94311674 ATAATATAT
1 AT-ATATAT
94311683 CTCATACATA
Statistics
Matches: 381, Mismatches: 13, Indels: 13
0.94 0.03 0.03
Matches are distributed among these distances:
48 3 0.01
49 371 0.97
50 7 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:94319422 original size:40 final size:39
Alignment explanation
Indices: 94319338--94319522 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
94319328 TCGAATGATG
* * * *
94319338 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
94319378 TCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
94319418 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
94319457 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
94319498 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
94319523 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:94319474 original size:79 final size:81
Alignment explanation
Indices: 94319338--94319520 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 81
94319328 TCGAATGATG
* *
94319338 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
94319402 TGTACGAGTTACTA-A
66 TGTACGAGTTACTATA
* * * ** *
94319417 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGTA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
94319479 TTTGTGCGAGTTACTATA
64 TTTGTACGAGTTACTATA
* * *
94319497 ACTGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
94319521 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAGTTACTATA
Found at i:94319544 original size:79 final size:79
Alignment explanation
Indices: 94319391--94319557 Score: 178
Period size: 79 Copynumber: 2.1 Consensus size: 79
94319381 GGACTAAGAT
* * **
94319391 CCGAAGGCATTTGTACGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGTATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
94319456 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
94319470 CCGAAGGTATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGTATTTGTACGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
94319533 TATATTC-GGTTAAATT
63 TAAATCCGGGTTAAATC
94319549 CCGAAGGTA
1 CCGAAGGTA
94319558 CGTGATTCGG
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (79 bp):
CCGAAGGTATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:94322990 original size:29 final size:29
Alignment explanation
Indices: 94322958--94323091 Score: 130
Period size: 29 Copynumber: 4.7 Consensus size: 29
94322948 ATACCCTTCG
** * *
94322958 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * ** *
94322987 AGCTTGCACACATAGT-TTATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
94323015 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
94323044 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
94323073 AGCACGCACACTTAG-GCCA
1 AGCTCGCACACTTAGTGCCA
94323092 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
28 26 0.29
29 63 0.71
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:94323043 original size:57 final size:58
Alignment explanation
Indices: 94322933--94323087 Score: 150
Period size: 57 Copynumber: 2.7 Consensus size: 58
94322923 AATTTAAGCC
* *** * * ** * *
94322933 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* ** * * *
94322991 TGCACACATAGT-TTATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
94323048 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAG
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAG
94323088 GCCAATCTCG
Statistics
Matches: 75, Mismatches: 21, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
57 42 0.56
58 33 0.44
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:94329584 original size:80 final size:80
Alignment explanation
Indices: 94329500--94329648 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
94329490 TATGGTAACC
* * * *
94329500 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
94329564 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
94329580 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
94329645 CCGG
66 CCGG
94329649 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:94329590 original size:40 final size:38
Alignment explanation
Indices: 94329541--94329648 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
94329531 ATCACGATTT
*
94329541 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
94329581 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
94329621 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
94329649 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:94337661 original size:80 final size:80
Alignment explanation
Indices: 94337577--94337725 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
94337567 TATGGTAACC
* * * *
94337577 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
94337641 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
94337657 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
94337722 CCGG
66 CCGG
94337726 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:94337667 original size:40 final size:38
Alignment explanation
Indices: 94337618--94337725 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
94337608 ATCACGATTT
*
94337618 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
94337658 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
94337698 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
94337726 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:94345769 original size:23 final size:23
Alignment explanation
Indices: 94345743--94345792 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
94345733 ACCCCATTCA
94345743 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
94345766 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
94345789 ATGC
1 ATGC
94345793 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:94345863 original size:26 final size:27
Alignment explanation
Indices: 94345827--94345893 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
94345817 GAACAAATAT
* *
94345827 GTCATTTTACCTTAC-CGGGTATTACA
1 GTCATTTTACCCTACAAGGGTATTACA
* *
94345853 GTCATTTTACCCTACAAGGGTATTTCG
1 GTCATTTTACCCTACAAGGGTATTACA
*
94345880 GTCATTCTACCCTA
1 GTCATTTTACCCTA
94345894 TGAGGTATTC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 14 0.40
27 21 0.60
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCCTACAAGGGTATTACA
Found at i:94345965 original size:27 final size:27
Alignment explanation
Indices: 94345906--94346210 Score: 423
Period size: 27 Copynumber: 11.3 Consensus size: 27
94345896 AGGTATTCCG
* *
94345906 GTCAGTTTATCACATAAGGG-GAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
94345932 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
94345959 GTTATTTTATCATATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* *
94345986 ATCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
94346013 ATCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
94346040 GTCATTTTATCACATATGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* ** *
94346067 GTCATTTTATCACATGAGGAAAAAACC
1 GTCATTTTATCACATAAGGGCAAAATC
*
94346094 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
94346121 ATCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
94346148 ATCGTTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
94346175 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
94346202 GTCAATTTA
1 GTCATTTTA
94346211 CCATGTAGGG
Statistics
Matches: 248, Mismatches: 30, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
26 19 0.08
27 229 0.92
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:94355421 original size:19 final size:21
Alignment explanation
Indices: 94355378--94355429 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
94355368 AAACAAGGTC
*
94355378 ACACGCTCGTGTGGCACAGGG
1 ACACGCCCGTGTGGCACAGGG
*
94355399 ACACGCCCGTGT-GCCCA-GG
1 ACACGCCCGTGTGGCACAGGG
94355418 ACACGCCCGTGT
1 ACACGCCCGTGT
94355430 CCTTAGGTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 14 0.48
20 4 0.14
21 11 0.38
ACGTcount: A:0.17, C:0.37, G:0.33, T:0.13
Consensus pattern (21 bp):
ACACGCCCGTGTGGCACAGGG
Found at i:94358347 original size:20 final size:20
Alignment explanation
Indices: 94358310--94358360 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
94358300 CTATAGCAAC
94358310 TCACAA-TTT-CAA-TTATT
1 TCACAACTTTACAACTTATT
94358327 TCAC-ACTTTTACAACTTATT
1 TCACAAC-TTTACAACTTATT
*
94358347 TTACAACTTTACAA
1 TCACAACTTTACAA
94358361 AATAGCCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 1 0.04
17 4 0.14
18 3 0.11
19 3 0.11
20 15 0.54
21 2 0.07
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (20 bp):
TCACAACTTTACAACTTATT
Found at i:94360889 original size:20 final size:20
Alignment explanation
Indices: 94360848--94360889 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
94360838 AGCACATGTA
* *
94360848 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
94360868 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
94360888 TT
1 TT
94360890 GATTTTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:94365003 original size:53 final size:53
Alignment explanation
Indices: 94364802--94365008 Score: 171
Period size: 53 Copynumber: 3.8 Consensus size: 53
94364792 ATTAGGGTTT
* * * * *
94364802 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * * * *
94364856 AAGGAAATCATGTAAGACCATGTCAAGATAGGGTATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * ** *
94364911 AAAGATCCCATGTAAGACCATACCAAGGCATGGTGATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
94364964 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
94365009 TGAAAAGGAA
Statistics
Matches: 114, Mismatches: 37, Indels: 5
0.73 0.24 0.03
Matches are distributed among these distances:
53 43 0.38
54 35 0.31
55 36 0.32
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:94368446 original size:28 final size:28
Alignment explanation
Indices: 94368399--94368495 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
94368389 ATTTAAACCC
*
94368399 TAGGGGT-ATATT-GGTAATTTTGCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
94368426 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
94368454 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
94368482 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
94368496 TGATCTACGC
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 9 0.14
28 56 0.86
ACGTcount: A:0.21, C:0.08, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:94369154 original size:27 final size:27
Alignment explanation
Indices: 94369124--94369185 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
94369114 GGGCAAAATG
94369124 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
94369151 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
94369178 GTAATTTT
1 GTAATTTT
94369186 TCAAACCATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:94369199 original size:27 final size:27
Alignment explanation
Indices: 94369168--94369264 Score: 115
Period size: 27 Copynumber: 3.6 Consensus size: 27
94369158 TACCCTACAG
*
94369168 GGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTTAGTAATTTTTCAAACCAA
* * *
94369195 TGGTATTTTGGTAATTTTAT-AAACAAA
1 GGGTATTTTAGTAATTTT-TCAAACCAA
* *
94369222 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTTCAAACCAA
*
94369249 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
94369265 CTGTAAATTG
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTTCAAACCAA
Found at i:94369200 original size:54 final size:54
Alignment explanation
Indices: 94369141--94369256 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
94369131 TACCCCACAA
** * * *
94369141 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
* ** *
94369195 TGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
94369249 GGGTATTT
1 GGGTATTT
94369257 TGGTAATTCT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.04
54 49 0.96
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.41
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:94369280 original size:54 final size:54
Alignment explanation
Indices: 94369168--94369271 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 54
94369158 TACCCTACAG
* ** *
94369168 GGGTATTTTAGTAATTTTTCAAACCATTGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTCTATAAACAAA
*
94369222 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTCTGTAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTCTATAAA
94369272 TTGAGGGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTCTATAAACAAA
Found at i:94374378 original size:53 final size:53
Alignment explanation
Indices: 94374298--94374419 Score: 156
Period size: 53 Copynumber: 2.3 Consensus size: 53
94374288 ATAAACTACG
* * * * *
94374298 ATAAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAG-TTC
1 ATAAGG-AAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTA
*
94374351 ATAAGGAAAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTA
1 ATAAGGAAA-GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTA
*
94374405 AAAAGGAAAGATACC
1 ATAAGGAAAGATACC
94374420 CATGTATCCT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
52 3 0.05
53 47 0.78
54 10 0.17
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (53 bp):
ATAAGGAAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTA
Found at i:94375706 original size:43 final size:43
Alignment explanation
Indices: 94375613--94375699 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
94375603 TCTGTTTAGA
* * *
94375613 AAAACTCCCATGTAGCATTTTCCCTTGGTACAACAAAAATCAG
1 AAAATTCCCATGTAACATTCTCCCTTGGTACAACAAAAATCAG
* *
94375656 AAAATTCCCATGTAACATTCTCCCTTTGTACAACAGAAATCAG
1 AAAATTCCCATGTAACATTCTCCCTTGGTACAACAAAAATCAG
94375699 A
1 A
94375700 GTATTCCACC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.26
Consensus pattern (43 bp):
AAAATTCCCATGTAACATTCTCCCTTGGTACAACAAAAATCAG
Found at i:94377474 original size:21 final size:22
Alignment explanation
Indices: 94377444--94377484 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
94377434 AAACATTATT
*
94377444 TGTGCGGAAGC-TTTTAAAATA
1 TGTGCCGAAGCTTTTTAAAATA
94377465 TGTGCCGAAGCTTTTTAAAA
1 TGTGCCGAAGCTTTTTAAAA
94377485 CCTGAGTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.34
Consensus pattern (22 bp):
TGTGCCGAAGCTTTTTAAAATA
Found at i:94378115 original size:18 final size:18
Alignment explanation
Indices: 94378092--94378128 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
94378082 ATGAAGCTGG
* *
94378092 TTTATCTCATTTTTCCAC
1 TTTATCTAATTTATCCAC
94378110 TTTATCTAATTTATCCAC
1 TTTATCTAATTTATCCAC
94378128 T
1 T
94378129 GCGTCGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTATCTAATTTATCCAC
Found at i:94379667 original size:25 final size:26
Alignment explanation
Indices: 94379639--94379689 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
94379629 TCATACATCT
*
94379639 CATAT-GGGCATAATAGTCATTTTAG
1 CATATAGGGCATAACAGTCATTTTAG
94379664 CATATAGGGGCATAACAGTCATTTTA
1 CATATA-GGGCATAACAGTCATTTTA
94379690 TCAATTTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.22
27 18 0.78
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (26 bp):
CATATAGGGCATAACAGTCATTTTAG
Found at i:94387329 original size:40 final size:39
Alignment explanation
Indices: 94387284--94387413 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
94387274 CGGAATATAA
94387284 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
94387324 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
94387364 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
94387404 CCGGATATAA
1 CCGGATATAA
94387414 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:94387428 original size:40 final size:40
Alignment explanation
Indices: 94387300--94387451 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
94387290 ATAACCATGT
* * *
94387300 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
94387340 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
94387380 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
94387420 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
94387452 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:94387434 original size:80 final size:80
Alignment explanation
Indices: 94387300--94387449 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
94387290 ATAACCATGT
*
94387300 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
94387364 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
94387380 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
94387443 CCCGGAT
64 CCCGGAT
94387450 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:94391565 original size:39 final size:40
Alignment explanation
Indices: 94391522--94391649 Score: 129
Period size: 39 Copynumber: 3.2 Consensus size: 40
94391512 CGGAATATAA
*
94391522 CCGGATATAACCA-TGTGCACAAATGCCTTC-GGTCTTAGC
1 CCGGATATAACCACT-TGCACAATTGCCTTCGGGTCTTAGC
* ** * *
94391561 CCGGATAGAATGACTCGCACGAATTGCCTGCGGGTCTTAGC
1 CCGGATATAACCACTTGCAC-AATTGCCTTCGGGTCTTAGC
* * *
94391602 CCAGATAT-AGCACTTGCACAATTGCCTTCGGGTCTTA-A
1 CCGGATATAACCACTTGCACAATTGCCTTCGGGTCTTAGC
94391640 CCGGATATAA
1 CCGGATATAA
94391650 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
38 7 0.10
39 32 0.45
40 17 0.24
41 15 0.21
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAATTGCCTTCGGGTCTTAGC
Found at i:94394827 original size:20 final size:20
Alignment explanation
Indices: 94394802--94394839 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
94394792 GTTTATTCGC
*
94394802 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
94394822 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
94394840 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:94396478 original size:28 final size:28
Alignment explanation
Indices: 94396446--94396514 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
94396436 GCGTAGATCA
94396446 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
94396474 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
94396502 CGATA-TACCCCTA
1 CGAAATTACCCCTA
94396515 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:94402797 original size:20 final size:20
Alignment explanation
Indices: 94402772--94402809 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
94402762 GTTTATTCGC
*
94402772 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
94402792 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
94402810 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:94404456 original size:28 final size:28
Alignment explanation
Indices: 94404424--94404492 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
94404414 GCGTAGATCA
94404424 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
94404452 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
94404480 CGATA-TACCCCTA
1 CGAAATTACCCCTA
94404493 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:94413320 original size:26 final size:26
Alignment explanation
Indices: 94413291--94413400 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
94413281 TGATACAAAT
94413291 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
94413317 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
94413343 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
94413369 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94413395 TGATAA
1 TGATAA
94413401 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:94413939 original size:26 final size:26
Alignment explanation
Indices: 94413910--94414019 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
94413900 TGATACAAAT
94413910 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
94413936 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
94413962 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
94413988 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94414014 TGATAA
1 TGATAA
94414020 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:94414163 original size:619 final size:618
Alignment explanation
Indices: 94412984--94414220 Score: 2411
Period size: 619 Copynumber: 2.0 Consensus size: 618
94412974 TCGGGAATCC
*
94412984 TGTGAATGTTGGCATAGGTTTAATTATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGATAGAA
1 TGTGAATGTTGGCATAGGTTTAATTATGTTAGTAGGCCTCTAGAAGGCCCAAGCTTAAGATAGAA
*
94413049 CCCGGTAATTTTAGTTAATTTTTGTTCCATAAGAAAAAGGGAGTGAAATTATGAAATATGACCTA
66 CCCGGTAATTTTAGTTAATTTTTGTTCCATAAGAAAAAGGGAGTGAAATTATGAAATAGGACCTA
94413114 TGTGAAAATGTTTGAAAATGATATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATA
131 TGTGAAAATGTTTGAAAATGATATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATA
94413179 GGAGGATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAACCATCATGTTGTTGTAGACA
196 GGAGGATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAACCATCATGTTGTTGTAGACA
*
94413244 AAATGTACACTTGATATCCATAATTTATGGTACAGATTGATACAAATTGATAATGGGTTAGGTAA
261 AAATGTACACTTGATATCCATAATTTATGGTACAAATTGATACAAATTGATAATGGGTTAGGTAA
94413309 ATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTTCATGATA
326 ATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTTCATGATA
94413374 ATGGTTTAGGTAAATGTTTCATGATAAGAAATTCATGTCTTTTGTATTAAAGAATTAAATGGATG
391 ATGGTTTAGGTAAATGTTTCATGATAAGAAATTCATGTCTTTTGTATTAAAGAATTAAATGGATG
94413439 AAATATGAAGTTTTATTAAAAGAAAAAGAGGTGAAAAGAACAAAGTTTTGTCCATCTTTGTTCAT
456 AAATATGAAGTTTTATTAAAAGAAAAAGAGGTGAAAAGAACAAAGTTTTGTCCATCTTTGTTCAT
*
94413504 CCTAGCCTAAAGTTACAGAAGAGAAAGGAGAGGAGAAAGCTCTTACATGTTCGGTCACTTGGGGA
521 CATAGCCTAAAGTTACAGAAGAGAAAGGAGAGGAGAAAGCTCTTA-ATGTTCGGTCACTTGGGGA
94413569 AGAAAATTGAAGGTAAGTTCATGGTAGTTTGCTT
585 AGAAAATTGAAGGTAAGTTCATGGTAGTTTGCTT
94413603 TGTGAATGTTGGCATAGGTTTAATTATGTTAGTAGGCCTCTAGAAGGCCCAAGCTTAAGATAGAA
1 TGTGAATGTTGGCATAGGTTTAATTATGTTAGTAGGCCTCTAGAAGGCCCAAGCTTAAGATAGAA
94413668 CCCGGTAATTTTAGTTAATTTTTGTTCCATAAGAAAAAGGGAGTGAAATTATGAAATAGGACCTA
66 CCCGGTAATTTTAGTTAATTTTTGTTCCATAAGAAAAAGGGAGTGAAATTATGAAATAGGACCTA
94413733 TGTGAAAATGTTTGAAAATGATATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATA
131 TGTGAAAATGTTTGAAAATGATATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATA
94413798 GGAGGATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAACCATCATGTTGTTGTAGACA
196 GGAGGATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAACCATCATGTTGTTGTAGACA
94413863 AAATGTACACTTGATATCCATAATTTATGGTACAAATTGATACAAATTGATAATGGGTTAGGTAA
261 AAATGTACACTTGATATCCATAATTTATGGTACAAATTGATACAAATTGATAATGGGTTAGGTAA
94413928 ATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTTCATGATA
326 ATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTTCATGATA
94413993 ATGGTTTAGGTAAATGTTTCATGATAAGAAATTCATGTCTTTTGTATTAAAGAATTAAATGGATG
391 ATGGTTTAGGTAAATGTTTCATGATAAGAAATTCATGTCTTTTGTATTAAAGAATTAAATGGATG
*
94414058 AAATATGAAGTTTTATTAAAAGAAAAAGGGGTGAAAAGAACAAAGTTTTGTCCATCTTTGTTCAT
456 AAATATGAAGTTTTATTAAAAGAAAAAGAGGTGAAAAGAACAAAGTTTTGTCCATCTTTGTTCAT
*
94414123 CATAGCCTAAAGTTAGAGAAGAGAAAGGAGAGGAGAAAGCTCTTAATGTTCGGTCACTTGGGGAA
521 CATAGCCTAAAGTTACAGAAGAGAAAGGAGAGGAGAAAGCTCTTAATGTTCGGTCACTTGGGGAA
94414188 GAAAATTGAAGGTAAGTTCATGGTAGTTTGCTT
586 GAAAATTGAAGGTAAGTTCATGGTAGTTTGCTT
94414221 CTATTTTGAG
Statistics
Matches: 612, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
618 53 0.09
619 559 0.91
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.31
Consensus pattern (618 bp):
TGTGAATGTTGGCATAGGTTTAATTATGTTAGTAGGCCTCTAGAAGGCCCAAGCTTAAGATAGAA
CCCGGTAATTTTAGTTAATTTTTGTTCCATAAGAAAAAGGGAGTGAAATTATGAAATAGGACCTA
TGTGAAAATGTTTGAAAATGATATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATA
GGAGGATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAACCATCATGTTGTTGTAGACA
AAATGTACACTTGATATCCATAATTTATGGTACAAATTGATACAAATTGATAATGGGTTAGGTAA
ATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTTCATGATA
ATGGTTTAGGTAAATGTTTCATGATAAGAAATTCATGTCTTTTGTATTAAAGAATTAAATGGATG
AAATATGAAGTTTTATTAAAAGAAAAAGAGGTGAAAAGAACAAAGTTTTGTCCATCTTTGTTCAT
CATAGCCTAAAGTTACAGAAGAGAAAGGAGAGGAGAAAGCTCTTAATGTTCGGTCACTTGGGGAA
GAAAATTGAAGGTAAGTTCATGGTAGTTTGCTT
Found at i:94416033 original size:136 final size:137
Alignment explanation
Indices: 94415789--94416074 Score: 538
Period size: 136 Copynumber: 2.1 Consensus size: 137
94415779 GAGTAGTCTC
94415789 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
94415854 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAA-GGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
94415918 ACTGTTA
131 ACTGTTA
*
94415925 CCCAAATGGGCTTGCATATGTTTGCTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
94415990 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
94416055 ACTGTTA
131 ACTGTTA
**
94416062 CCTGAATGGGCTT
1 CCCAAATGGGCTT
94416075 AGGCCCAATG
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 111 0.76
137 35 0.24
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:94419880 original size:26 final size:25
Alignment explanation
Indices: 94419837--94419945 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 25
94419827 TGATACAAAT
94419837 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
94419862 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
*
94419888 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
94419914 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGG-TTAGGTAAATGTTCCA
94419940 TGATAA
1 TGATAA
94419946 GAATTCATGT
Statistics
Matches: 78, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
25 11 0.14
26 65 0.83
27 2 0.03
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:94421973 original size:137 final size:137
Alignment explanation
Indices: 94421727--94422013 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
94421717 GAGTAGTCTC
94421727 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
94421792 TGTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGTACC
94421857 ACTGTTA
131 ACTGTTA
94421864 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
94421929 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGTACC
94421994 ACTGTTA
131 ACTGTTA
**
94422001 CCTGAATGGGCTT
1 CCCAAATGGGCTT
94422014 AGGCCCAATG
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:94424037 original size:16 final size:17
Alignment explanation
Indices: 94424016--94424047 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
94424006 TTTAATATTG
94424016 ATTGATT-AATGTATGA
1 ATTGATTAAATGTATGA
94424032 ATTGATTAAATGTATG
1 ATTGATTAAATGTATG
94424048 TGAAAGGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44
Consensus pattern (17 bp):
ATTGATTAAATGTATGA
Found at i:94429131 original size:48 final size:48
Alignment explanation
Indices: 94429060--94429269 Score: 276
Period size: 48 Copynumber: 4.2 Consensus size: 48
94429050 CAAGATAAAT
* * *
94429060 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
94429108 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
94429156 ATATATATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 --------ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
94429212 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
94429260 ATGTGTATAT
1 ATATGTATAT
94429270 ATTGTGGCCG
Statistics
Matches: 142, Mismatches: 12, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
48 98 0.69
56 44 0.31
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:94429217 original size:104 final size:104
Alignment explanation
Indices: 94429058--94429271 Score: 365
Period size: 104 Copynumber: 2.1 Consensus size: 104
94429048 TACAAGATAA
* *
94429058 ATATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 ATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
94429123 AAAGCCGAATGGCTAACATGAAATATGTATGAGATATAT
66 AAAGCCGAATGGCTAACATGAAATATGTATGAGATATAT
*
94429162 ATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 ATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
** * *
94429227 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATGTGT
66 AAAGCCGAATGGCTAACATGAAATATGTATGAGATATAT
94429266 ATATAT
1 ATATAT
94429272 TGTGGCCGAA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
104 103 1.00
ACGTcount: A:0.36, C:0.06, G:0.24, T:0.33
Consensus pattern (104 bp):
ATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAACATGAAATATGTATGAGATATAT
Found at i:94429457 original size:37 final size:37
Alignment explanation
Indices: 94429406--94429511 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
94429396 ATATATTTCG
94429406 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCC-
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
*
94429442 GAGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
1 G-GTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
*
94429480 GGTAAGACCCGATGACTACGTGTGGGGATTAT
1 GGTAAGACCCGATGACTACGTGTGGAGATTAT
94429512 TCGAGCTAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
36 1 0.02
37 63 0.97
38 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
Found at i:94433005 original size:30 final size:29
Alignment explanation
Indices: 94432971--94433034 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 29
94432961 ATGAATCGGA
94432971 AGCTTTGGCACTAAATGTGC-ATTTTAAACT
1 AGCTTTGGCACTAAATGTGCGA-TTT-AACT
*
94433001 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAATGTGCGATTTAACT
94433030 AGCTT
1 AGCTT
94433035 CGTTTACTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 9 0.28
30 22 0.69
31 1 0.03
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (29 bp):
AGCTTTGGCACTAAATGTGCGATTTAACT
Found at i:94434768 original size:8 final size:8
Alignment explanation
Indices: 94434751--94434781 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
94434741 TCCTGACATG
94434751 TCAATCAT
1 TCAATCAT
*
94434759 TCAATAAT
1 TCAATCAT
94434767 TCAATCAT
1 TCAATCAT
94434775 TCAATCA
1 TCAATCA
94434782 AACTAGCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (8 bp):
TCAATCAT
Found at i:94441213 original size:40 final size:39
Alignment explanation
Indices: 94441169--94441393 Score: 272
Period size: 40 Copynumber: 5.7 Consensus size: 39
94441159 GCCACTAGCT
*
94441169 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
94441209 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGAA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
94441248 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
94441288 CGAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
94441328 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
*
94441368 CAAATG-CTCTCGGGATTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
94441394 TATCATCCGA
Statistics
Matches: 164, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 38 0.23
40 126 0.77
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:94441267 original size:79 final size:80
Alignment explanation
Indices: 94441169--94441392 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 80
94441159 GCCACTAGCT
* *
94441169 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
94441234 -TATAATAACTCGAA
66 ATATAATAACTCGAA
* * *
94441248 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* * *
94441313 ATATAGTAGCTCGCA
66 ATATAATAACTCGAA
* ** * * *
94441328 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGATTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGACTTAGCCC
94441391 GG
64 GG
94441393 TTATCATCCG
Statistics
Matches: 125, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 63 0.50
80 62 0.50
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGAA
Found at i:94449575 original size:40 final size:40
Alignment explanation
Indices: 94449490--94449640 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
94449480 AATTGAATGA
* * *
94449490 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
94449530 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
94449571 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
94449610 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
94449641 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:94449654 original size:40 final size:40
Alignment explanation
Indices: 94449527--94449656 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
94449517 ATGCTGGAAA
* * * *
94449527 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
94449567 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
94449607 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
94449647 TTATATCCGG
1 TTATATCCGG
94449657 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:94470377 original size:17 final size:18
Alignment explanation
Indices: 94470335--94470383 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
94470325 AGTTGAAAAG
94470335 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
94470354 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
94470371 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
94470384 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:94471269 original size:40 final size:40
Alignment explanation
Indices: 94471203--94471369 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
94471193 AAATTGAATG
* * *
94471203 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
94471242 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
94471282 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
94471322 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
94471362 ATATCCGG
1 ATATCCGG
94471370 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:94475961 original size:114 final size:114
Alignment explanation
Indices: 94475760--94475990 Score: 336
Period size: 114 Copynumber: 2.0 Consensus size: 114
94475750 AGACACGGGC
*
94475760 GTGTCTCAGTCGTGTGGACAGCACAGCCTTGAACACAGGCGTGTGCCCTAGCCGTGTGAAGTCTG
1 GTGTCTCAGTCGTGTGGACAGAACAGCCTTGAACACAGGCGTGTGCCCTAGCCGTGTGAAGTCTG
** **
94475825 CACCGATTTTGTGAAATTTAATTTTCCACACAGTCTAGCACACAAGCAT
66 CACCGATTCAGTGAAAAATAATTTTCCACACAGTCTAGCACACAAGCAT
* ** * *
94475874 GTGTCTCAGTCGTGTGGACGGAACAGCCTTGAACATGGGCGTGTGCCCTGGCTGTGTGAAGTCTG
1 GTGTCTCAGTCGTGTGGACAGAACAGCCTTGAACACAGGCGTGTGCCCTAGCCGTGTGAAGTCTG
* * * *
94475939 CACCTATTCAGTGAAAAATAATTTTCCACATAGTCTAGCACACGAGCGT
66 CACCGATTCAGTGAAAAATAATTTTCCACACAGTCTAGCACACAAGCAT
94475988 GTG
1 GTG
94475991 ACTTGGCTGT
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
114 103 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (114 bp):
GTGTCTCAGTCGTGTGGACAGAACAGCCTTGAACACAGGCGTGTGCCCTAGCCGTGTGAAGTCTG
CACCGATTCAGTGAAAAATAATTTTCCACACAGTCTAGCACACAAGCAT
Found at i:94479403 original size:124 final size:124
Alignment explanation
Indices: 94479181--94479405 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
94479171 GAATTATGTG
* * * * * * *
94479181 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
94479246 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
94479305 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
94479370 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
94479406 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:94479527 original size:40 final size:40
Alignment explanation
Indices: 94479400--94479529 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
94479390 TTGCTGGAAA
* * *
94479400 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
94479440 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
94479480 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
94479520 TTATATCCGG
1 TTATATCCGG
94479530 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:94482502 original size:93 final size:93
Alignment explanation
Indices: 94482390--94482561 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
94482380 GCCCATAAGT
* *
94482390 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94482455 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
94482483 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
94482548 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
94482562 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:94482557 original size:46 final size:46
Alignment explanation
Indices: 94482382--94482557 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
94482372 TGTAACCCGC
* *
94482382 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
94482428 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
94482474 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
94482521 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
94482558 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:94484968 original size:15 final size:15
Alignment explanation
Indices: 94484939--94484988 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
94484929 CAAAGATAAC
*
94484939 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
94484953 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
94484968 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
94484983 AAGAAA
1 AAGAAA
94484989 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:94484997 original size:15 final size:15
Alignment explanation
Indices: 94484950--94484997 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
94484940 AGAAAACCGA
94484950 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
94484964 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
94484980 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
94484995 ATA
1 ATA
94484998 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:94488031 original size:93 final size:93
Alignment explanation
Indices: 94487919--94488090 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
94487909 GCCCATAAGT
* *
94487919 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94487984 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
94488012 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94488077 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
94488091 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:94488086 original size:46 final size:46
Alignment explanation
Indices: 94487911--94488086 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
94487901 TGTAACCCGC
* * *
94487911 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
94487957 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
94488007 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
94488050 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
94488087 TGCCCAAACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 64 0.58
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:94488577 original size:28 final size:28
Alignment explanation
Indices: 94488522--94488578 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
94488512 TTTTGGAAAA
* *
94488522 TTACAGTTTTGCCCCTAAACTTGCAAAT
1 TTACACTTTTGCCCCTAAACTCGCAAAT
*
94488550 TTACACTTTTGCCCC-AAAGCTCGTAAAT
1 TTACACTTTTGCCCCTAAA-CTCGCAAAT
94488578 T
1 T
94488579 AAACTTCAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.35
Consensus pattern (28 bp):
TTACACTTTTGCCCCTAAACTCGCAAAT
Found at i:94491773 original size:66 final size:66
Alignment explanation
Indices: 94491698--94491833 Score: 272
Period size: 66 Copynumber: 2.1 Consensus size: 66
94491688 AACCTCTATT
94491698 CTGAGTAGACCCAAAATTGGGCTGTTACAACTCTCCTTTAAGGATTTTCATCCCCGATAATCTTA
1 CTGAGTAGACCCAAAATTGGGCTGTTACAACTCTCCTTTAAGGATTTTCATCCCCGATAATCTTA
94491763 C
66 C
94491764 CTGAGTAGACCCAAAATTGGGCTGTTACAACTCTCCTTTAAGGATTTTCATCCCCGATAATCTTA
1 CTGAGTAGACCCAAAATTGGGCTGTTACAACTCTCCTTTAAGGATTTTCATCCCCGATAATCTTA
94491829 C
66 C
94491830 CTGA
1 CTGA
94491834 AAATGGGTTT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (66 bp):
CTGAGTAGACCCAAAATTGGGCTGTTACAACTCTCCTTTAAGGATTTTCATCCCCGATAATCTTA
C
Found at i:94494577 original size:27 final size:27
Alignment explanation
Indices: 94494527--94494579 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
94494517 CAACACATAG
**
94494527 GGGCAAAACAGTCATCTTACCATATAA
1 GGGCAAAACAACCATCTTACCATATAA
* *
94494554 GGGCAAAACAACCATTTTATCATATA
1 GGGCAAAACAACCATCTTACCATATA
94494580 GGGGGTCTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.21, G:0.13, T:0.25
Consensus pattern (27 bp):
GGGCAAAACAACCATCTTACCATATAA
Found at i:94503534 original size:18 final size:18
Alignment explanation
Indices: 94503511--94503549 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
94503501 GTTGCTCTCC
94503511 TTTAAAGTGAAGCCCTTT
1 TTTAAAGTGAAGCCCTTT
94503529 TTTAAAGTGAAGCCCTTT
1 TTTAAAGTGAAGCCCTTT
94503547 TTT
1 TTT
94503550 GGATGCATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (18 bp):
TTTAAAGTGAAGCCCTTT
Found at i:94503761 original size:25 final size:24
Alignment explanation
Indices: 94503703--94503763 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
94503693 TTAGTTTATC
*
94503703 AATAAAATTTAATAAAAATTATTAA
1 AATAAAA-TTAATAAAAATTAATAA
**
94503728 AATTCAATTAATTGAAAAATTAAT-A
1 AATAAAATTAA-T-AAAAATTAATAA
94503753 AATAAAATTAA
1 AATAAAATTAA
94503764 AATTAAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
24 4 0.14
25 16 0.55
26 9 0.31
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (24 bp):
AATAAAATTAATAAAAATTAATAA
Found at i:94503772 original size:13 final size:14
Alignment explanation
Indices: 94503726--94503775 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 14
94503716 AAAAATTATT
94503726 AAAATTCAATTAATTGA
1 AAAATT-AA-TAATT-A
*
94503743 AAAATTAATAAAT-
1 AAAATTAATAATTA
94503756 AAAATTAA-AATTA
1 AAAATTAATAATTA
94503769 AAAATTA
1 AAAATTA
94503776 TGAGAGACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 3 0.10
13 15 0.50
15 4 0.13
16 2 0.07
17 6 0.20
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (14 bp):
AAAATTAATAATTA
Found at i:94516546 original size:40 final size:40
Alignment explanation
Indices: 94516424--94516547 Score: 126
Period size: 40 Copynumber: 3.1 Consensus size: 40
94516414 TGAATGATAC
* * * * ***
94516424 CCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
* * *
94516464 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
94516504 CCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GTGGTTATAT
94516544 CCGG
1 CCGG
94516548 TTGTATTCCG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
39 4 0.06
40 65 0.94
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
Found at i:94524502 original size:40 final size:40
Alignment explanation
Indices: 94524380--94524503 Score: 126
Period size: 40 Copynumber: 3.1 Consensus size: 40
94524370 TGAATGATAC
* * * * ***
94524380 CCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
* * *
94524420 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
94524460 CCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GTGGTTATAT
94524500 CCGG
1 CCGG
94524504 TTGTATTCCG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
39 4 0.06
40 65 0.94
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
Found at i:94534241 original size:16 final size:15
Alignment explanation
Indices: 94534220--94534249 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
94534210 CCCCTAGTTC
94534220 TAATATATATAAATAT
1 TAATATA-ATAAATAT
94534236 TAATATAATAAATA
1 TAATATAATAAATA
94534250 GATATGTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
TAATATAATAAATAT
Found at i:94535931 original size:21 final size:21
Alignment explanation
Indices: 94535902--94535943 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
94535892 CCCATCCCAT
94535902 CCCGAACCAACCAACACACCA
1 CCCGAACCAACCAACACACCA
* *
94535923 CCCGTACCAACCAACATACCA
1 CCCGAACCAACCAACACACCA
94535944 TGTAGGGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.50, G:0.05, T:0.05
Consensus pattern (21 bp):
CCCGAACCAACCAACACACCA
Found at i:94538608 original size:27 final size:27
Alignment explanation
Indices: 94538578--94538700 Score: 192
Period size: 27 Copynumber: 4.6 Consensus size: 27
94538568 GATTTATAAC
94538578 ATTATTGAAATACCCCTGTAGGGTAGA
1 ATTATTGAAATACCCCTGTAGGGTAGA
*
94538605 ATTACTGAAATACCCCTGTAGGGTAGA
1 ATTATTGAAATACCCCTGTAGGGTAGA
*
94538632 ATTATTGAAATACCCTTGTAGGGTAGA
1 ATTATTGAAATACCCCTGTAGGGTAGA
* *
94538659 AATATCGAAATACCCCTGTAGGGTAGA
1 ATTATTGAAATACCCCTGTAGGGTAGA
* *
94538686 ATTATCGAGATACCC
1 ATTATTGAAATACCC
94538701 TTGTGGATAA
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (27 bp):
ATTATTGAAATACCCCTGTAGGGTAGA
Found at i:94538714 original size:26 final size:27
Alignment explanation
Indices: 94538578--94538714 Score: 145
Period size: 27 Copynumber: 5.1 Consensus size: 27
94538568 GATTTATAAC
* * *
94538578 ATTATTGAAATACCCCTGTAGGGTAGA
1 ATTATCGAAATACCCTTGTAGGGTAAA
* *
94538605 ATTA-CTGAAATACCCCTGTAGGGTAGA
1 ATTATC-GAAATACCCTTGTAGGGTAAA
*
94538632 ATTATTGAAATACCCTTGTAGGGTAGAA
1 ATTATCGAAATACCCTTGTAGGGTA-AA
* *
94538660 A-TATCGAAATACCCCTGTAGGGTAGA
1 ATTATCGAAATACCCTTGTAGGGTAAA
* *
94538686 ATTATCGAGATACCCTTGT-GGATAAA
1 ATTATCGAAATACCCTTGTAGGGTAAA
94538712 ATT
1 ATT
94538715 TCCATTTTGC
Statistics
Matches: 95, Mismatches: 11, Indels: 9
0.83 0.10 0.08
Matches are distributed among these distances:
26 10 0.11
27 83 0.87
28 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29
Consensus pattern (27 bp):
ATTATCGAAATACCCTTGTAGGGTAAA
Found at i:94539251 original size:28 final size:28
Alignment explanation
Indices: 94539211--94539300 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
94539201 GGAGGAAGCG
94539211 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
94539239 TTCTGGTGGCTATGCCACAAATATCT-A
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
94539266 TTCTGATGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
94539293 ATCTGGTG
1 TTCTGGTG
94539301 ATTCTATCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.13
27 22 0.40
28 26 0.47
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:94539312 original size:54 final size:53
Alignment explanation
Indices: 94539211--94539323 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 53
94539201 GGAGGAAGCG
* *
94539211 TTCTGGTGGCTATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGATGGCTATGCCACAAATATCTGTATCTGGTGGCTAT-CCAC-AATATCTA
* * *
94539266 TTCTGATGGCTCTGCCAC-AATATCTGTATCTGGTGATTCTAT-CACAATATCTG
1 TTCTGATGGCTATGCCACAAATATCTGTATCTGGTG--GCTATCCACAATATCTA
94539319 TTCTG
1 TTCTG
94539324 GCAGCCAGGC
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
53 12 0.24
54 19 0.37
55 16 0.31
56 4 0.08
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (53 bp):
TTCTGATGGCTATGCCACAAATATCTGTATCTGGTGGCTATCCACAATATCTA
Found at i:94545050 original size:2 final size:2
Alignment explanation
Indices: 94545043--94545080 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
94545033 CATTTTAACT
94545043 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94545081 GCACAAATCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94548198 original size:2 final size:2
Alignment explanation
Indices: 94548191--94548232 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
94548181 TCATTTTAAC
94548191 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94548233 GCACAAATCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94558203 original size:124 final size:122
Alignment explanation
Indices: 94557983--94558204 Score: 293
Period size: 124 Copynumber: 1.8 Consensus size: 122
94557973 GAATTATGTG
* * * *
94557983 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
94558048 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
94558105 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
94558169 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
94558205 TCCGGGTTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:94558248 original size:40 final size:40
Alignment explanation
Indices: 94558163--94558313 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
94558153 AATTGAATGA
* * * *
94558163 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
94558203 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
94558244 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
94558283 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
94558314 ACATGCTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:94558297 original size:80 final size:80
Alignment explanation
Indices: 94558164--94558313 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
94558154 ATTGAATGAT
* *
94558164 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
94558229 TGTGCTAGTGGCTAC
66 TGTGCTAGTGGCTAC
* * * *
94558244 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
94558307 TTTGTGC
64 ATTGTGC
94558314 ACATGCTTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 4 0.07
80 57 0.93
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCTAC
Found at i:94569480 original size:18 final size:17
Alignment explanation
Indices: 94569439--94569481 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
94569429 ATGGGAAATT
*
94569439 AGCATGATTAATTTGGG
1 AGCATGATAAATTTGGG
*
94569456 A-CATGATAAATGTTGTG
1 AGCATGATAAAT-TTGGG
94569473 AGCATGATA
1 AGCATGATA
94569482 GTGGATGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 9 0.41
17 6 0.27
18 7 0.32
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.33
Consensus pattern (17 bp):
AGCATGATAAATTTGGG
Found at i:94572458 original size:26 final size:26
Alignment explanation
Indices: 94572400--94572483 Score: 104
Period size: 26 Copynumber: 3.3 Consensus size: 26
94572390 CTGGAGGCCT
94572400 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
94572424 AGCCC-TTTCGGTAATCTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
94572449 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
94572475 AGCCCTTTT
1 AGCCCTTTT
94572484 TCACTTCTTC
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
22 3 0.06
23 2 0.04
24 13 0.26
25 6 0.12
26 26 0.52
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:94572558 original size:20 final size:20
Alignment explanation
Indices: 94572533--94572587 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
94572523 TTATGAATAC
*
94572533 ATCATGTGCATTTCATAT-A
1 ATCATGTGCATATCATATCA
94572552 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
94572573 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
94572588 GCGCATGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 8 0.24
20 24 0.73
21 1 0.03
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:94590732 original size:47 final size:47
Alignment explanation
Indices: 94590661--94590777 Score: 180
Period size: 47 Copynumber: 2.5 Consensus size: 47
94590651 GCCCATAAGT
* *
94590661 GAACTCGGACTCAACACAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
94590708 GAACTCTGACTCAACTTAATGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
94590755 GACCTCAGACTCAACTCAACGAG
1 GAACTCAGACTCAACTCAACGAG
94590778 CTTAAAACTC
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94599733 original size:31 final size:31
Alignment explanation
Indices: 94599695--94599764 Score: 140
Period size: 31 Copynumber: 2.3 Consensus size: 31
94599685 CAAAAAGGGG
94599695 CACACGCCCGTGCAGGTGGGTCGTGTGGACT
1 CACACGCCCGTGCAGGTGGGTCGTGTGGACT
94599726 CACACGCCCGTGCAGGTGGGTCGTGTGGACT
1 CACACGCCCGTGCAGGTGGGTCGTGTGGACT
94599757 CACACGCC
1 CACACGCC
94599765 TATGTGACTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.14, C:0.33, G:0.36, T:0.17
Consensus pattern (31 bp):
CACACGCCCGTGCAGGTGGGTCGTGTGGACT
Found at i:94605682 original size:31 final size:31
Alignment explanation
Indices: 94605639--94605722 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
94605629 TTAGTCTTGA
94605639 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
94605669 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* *
94605700 CATATCACTAGACCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
94605723 ACTGTAAACG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:94605793 original size:42 final size:42
Alignment explanation
Indices: 94605746--94605879 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
94605736 TGGCCCTTAG
*
94605746 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
94605788 GCCCATTTCAATATCACATGTAATGTCAATAAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
94605830 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
94605872 GCCCATTT
1 GCCCATTT
94605880 GAGGAGACTA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:94606760 original size:12 final size:12
Alignment explanation
Indices: 94606743--94606767 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94606733 GAAGTTGAAA
94606743 CGTTTCCATAAT
1 CGTTTCCATAAT
94606755 CGTTTCCATAAT
1 CGTTTCCATAAT
94606767 C
1 C
94606768 AATCACCTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.08, T:0.40
Consensus pattern (12 bp):
CGTTTCCATAAT
Found at i:94606902 original size:27 final size:27
Alignment explanation
Indices: 94606872--94606936 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
94606862 GGGCATATTC
94606872 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
94606899 GTCACTTTACCTTATAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
94606926 GTCTTTTTACC
1 GTCATTTTACC
94606937 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:94606937 original size:27 final size:27
Alignment explanation
Indices: 94606894--94606945 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
94606884 TACAAGGGTA
94606894 TTACGGTCACTTTACCT-TATAGGGGCT
1 TTACGGTCACTTTACCTAT-TAGGGGCT
**
94606921 TTACGGTCTTTTTACCTATTAGGGG
1 TTACGGTCACTTTACCTATTAGGGG
94606946 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.40
Consensus pattern (27 bp):
TTACGGTCACTTTACCTATTAGGGGCT
Found at i:94607023 original size:27 final size:27
Alignment explanation
Indices: 94606993--94607097 Score: 79
Period size: 27 Copynumber: 3.8 Consensus size: 27
94606983 GATCTACAAA
94606993 CCAAGGGTATTTCAGTAATTTTGTAAG
1 CCAAGGGTATTTCAGTAATTTTGTAAG
* * *
94607020 CCAATGGCATTTCTA-TAATTTTTAGAAAG
1 CCAAGGGTATTTC-AGTAA-TTTT-GTAAG
* *
94607049 TCAAGGGTATTTTC-GTAATTTTGTAAA
1 CCAAGGGTA-TTTCAGTAATTTTGTAAG
* * **
94607076 TCAGGGGTATTTTGGTAATTTT
1 CCAAGGGTATTTCAGTAATTTT
94607098 ATAAATTGAG
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
26 3 0.05
27 33 0.53
28 9 0.15
29 13 0.21
30 4 0.06
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.42
Consensus pattern (27 bp):
CCAAGGGTATTTCAGTAATTTTGTAAG
Found at i:94607102 original size:27 final size:27
Alignment explanation
Indices: 94607039--94607176 Score: 100
Period size: 27 Copynumber: 5.1 Consensus size: 27
94607029 TTTCTATAAT
* * *
94607039 TTTTAGAAAGTCAAGGGTATTTTCGTAA
1 TTTTACAAA-TCAGGGGTATTTTGGTAA
**
94607067 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
94607094 TTTTATAAAT-TGAGGGTATTTCGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * * * * *
94607121 TTTCACAAACCAGTGGTATTTCGATAG
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
94607148 TTTTACAAA-CTAGGGGTGTTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
94607175 TT
1 TT
94607177 CTATCCTACA
Statistics
Matches: 87, Mismatches: 20, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
26 2 0.02
27 77 0.89
28 8 0.09
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:94607248 original size:27 final size:27
Alignment explanation
Indices: 94607212--94607405 Score: 255
Period size: 27 Copynumber: 7.2 Consensus size: 27
94607202 TTTCACCATT
* *
94607212 GAGGGTAAAACGGTAATTTTGTAAA-C
1 GAGGGTAAAACGGTAATTCTATAAATC
* * * *
94607238 TGAAGGTAAAATGGTAATTTTGTAAATC
1 -GAGGGTAAAACGGTAATTCTATAAATC
94607266 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
*
94607293 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
* *
94607320 GAGGGTAAAACGGTAATTTTGTAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
* *
94607347 AAGGGTGAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
* *
94607374 GAGGGTAAAATGGTAATTCTACAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
94607401 GAGGG
1 GAGGG
94607406 CATTTCAGTA
Statistics
Matches: 148, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 147 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTATAAATC
Found at i:94607327 original size:81 final size:81
Alignment explanation
Indices: 94607212--94607405 Score: 300
Period size: 81 Copynumber: 2.4 Consensus size: 81
94607202 TTTCACCATT
* * * * * *
94607212 GAGGGTAAAACGGTAATTTTGTAAA-CTGAAGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAA
1 GAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAA
94607276 CGGTAATTCTATAAATC
65 CGGTAATTCTATAAATC
*
94607293 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTGAAAC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAAC
94607358 GGTAATTCTATAAATC
66 GGTAATTCTATAAATC
*
94607374 GAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGG
94607406 CATTTCAGTA
Statistics
Matches: 104, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
81 103 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAAC
GGTAATTCTATAAATC
Found at i:94632725 original size:30 final size:30
Alignment explanation
Indices: 94632681--94632769 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
94632671 CAAAGATAAC
94632681 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
94632710 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
94632740 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
94632770 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:94632729 original size:15 final size:15
Alignment explanation
Indices: 94632681--94632760 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
94632671 CAAAGATAAC
*
94632681 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
94632695 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
94632710 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
94632725 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
94632740 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
94632755 AAGAAA
1 AAGAAA
94632761 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:94632769 original size:15 final size:15
Alignment explanation
Indices: 94632692--94632769 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
94632682 AGAAAACCGA
94632692 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
94632707 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
94632721 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
94632736 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
94632752 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
94632767 ATA
1 ATA
94632770 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:94635828 original size:93 final size:93
Alignment explanation
Indices: 94635716--94635887 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
94635706 GCCCATAAGT
* *
94635716 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94635781 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
94635809 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94635874 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
94635888 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94635883 original size:46 final size:46
Alignment explanation
Indices: 94635708--94635883 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
94635698 TGTAACCCGC
* * *
94635708 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
94635754 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
94635804 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
94635847 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94635884 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:94640997 original size:39 final size:39
Alignment explanation
Indices: 94640915--94641058 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 39
94640905 GCTACTCGTT
* * * *
94640915 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGACTTAGTCCGGATT-TAGTAACTCGCA
94640955 CAAATGCCTTCGGGACTTA-TCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGTCCGGATTTAGTAACTCGCA
* * *
94640994 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGTCCGGATTTAGTAAC-TCGCA
*
94641035 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGTCCGGA
94641059 CATCATTCGA
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
38 3 0.03
39 40 0.43
40 41 0.45
41 8 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGTCCGGATTTAGTAACTCGCA
Found at i:94641043 original size:40 final size:39
Alignment explanation
Indices: 94640915--94641058 Score: 148
Period size: 39 Copynumber: 3.6 Consensus size: 39
94640905 GCTACTCGTT
* * * * * *
94640915 CAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCA
1 CAAATGCCTTC-GGACTTAGTCCGGATATAGTAACTAGCA
* *
94640955 CAAATGCCTTCGGGACTTA-TCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGTCCGGATATAGTAACTAGCA
*
94640994 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGTCCGGATATAGTAAC-TAGCA
*
94641035 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGTCCGGA
94641059 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
38 3 0.03
39 41 0.45
40 39 0.43
41 8 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGTCCGGATATAGTAACTAGCA
Found at i:94648982 original size:40 final size:40
Alignment explanation
Indices: 94648757--94648982 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
94648747 GCTACTCGTT
* * *
94648757 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
94648797 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
* *
94648837 CAAATGCCTTCGGATCTTAGTCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
94648877 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
94648917 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
94648958 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
94648983 CATCATTCGA
Statistics
Matches: 170, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:94651667 original size:17 final size:17
Alignment explanation
Indices: 94651645--94651678 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
94651635 CGGCCAAACA
94651645 ACAGAGAAGAGGGAGAG
1 ACAGAGAAGAGGGAGAG
**
94651662 ACAGAGTTGAGGGAGAG
1 ACAGAGAAGAGGGAGAG
94651679 CCGAGAATAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.47, T:0.06
Consensus pattern (17 bp):
ACAGAGAAGAGGGAGAG
Found at i:94653697 original size:46 final size:46
Alignment explanation
Indices: 94653630--94653804 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
94653620 TGTAACCCGC
*
94653630 CCATAAGTGAACTCGGACTCAATTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
94653676 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
94653726 -C-TCA-CGAACTCGGACTCAATTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
94653769 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
94653805 AACTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 3 0.03
46 61 0.56
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:94654274 original size:30 final size:30
Alignment explanation
Indices: 94654229--94654288 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
94654219 ATTTAATACG
*
94654229 AACTTTGGCAAAATTACATTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
* *
94654259 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
94654289 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:94656715 original size:9 final size:8
Alignment explanation
Indices: 94656698--94656756 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 8
94656688 AACAAAAAAG
94656698 AAAAAGAA
1 AAAAAGAA
94656706 AAAAAGGAA
1 AAAAA-GAA
94656715 AAAAA-AA
1 AAAAAGAA
*
94656722 CAAAAG-A
1 AAAAAGAA
*
94656729 TAAAAGAA
1 AAAAAGAA
94656737 ACAAAAG--
1 A-AAAAGAA
94656744 AAAAAGAA
1 AAAAAGAA
94656752 AAAAA
1 AAAAA
94656757 TAGGGAGAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
6 5 0.12
7 13 0.31
8 11 0.26
9 13 0.31
ACGTcount: A:0.83, C:0.03, G:0.12, T:0.02
Consensus pattern (8 bp):
AAAAAGAA
Found at i:94656715 original size:15 final size:14
Alignment explanation
Indices: 94656691--94656756 Score: 87
Period size: 15 Copynumber: 4.4 Consensus size: 14
94656681 TTGCCTAAAC
94656691 AAAAAAGAAAAAGA
1 AAAAAAGAAAAAGA
*
94656705 AAAAAAGGAAAAAAA
1 AAAAAA-GAAAAAGA
94656720 AACAAAAGATAAAAGA
1 AA-AAAAGA-AAAAGA
94656736 AACAAAAGAAAAAGA
1 AA-AAAAGAAAAAGA
94656751 AAAAAA
1 AAAAAA
94656757 TAGGGAGAGA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
14 10 0.21
15 19 0.40
16 18 0.38
ACGTcount: A:0.83, C:0.03, G:0.12, T:0.02
Consensus pattern (14 bp):
AAAAAAGAAAAAGA
Found at i:94656717 original size:16 final size:16
Alignment explanation
Indices: 94656687--94656756 Score: 76
Period size: 16 Copynumber: 4.5 Consensus size: 16
94656677 GATTTTGCCT
*
94656687 AAACAAAAAAGAAAAAG
1 AAACAAAAGA-AAAAAG
94656704 AAA-AAAAGGAAAAAA-
1 AAACAAAA-GAAAAAAG
*
94656719 AAACAAAAGATAAAAG
1 AAACAAAAGAAAAAAG
94656735 AAACAAAAG-AAAAAG
1 AAACAAAAGAAAAAAG
94656750 AAA-AAAA
1 AAACAAAA
94656757 TAGGGAGAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
14 4 0.09
15 17 0.36
16 22 0.47
17 4 0.09
ACGTcount: A:0.83, C:0.04, G:0.11, T:0.01
Consensus pattern (16 bp):
AAACAAAAGAAAAAAG
Found at i:94656737 original size:22 final size:23
Alignment explanation
Indices: 94656687--94656755 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 23
94656677 GATTTTGCCT
94656687 AAACAAAAAAGAAAAAGAAAAAAAGG
1 AAAC-AAAAA-AAAAAG-AAAAAAGG
*
94656713 AAA-AAAAAACAAAAGATAAAA-G
1 AAACAAAAAA-AAAAGAAAAAAGG
*
94656735 AAACAAAAGAAAAAGAAAAAA
1 AAACAAAAAAAAAAGAAAAAA
94656756 ATAGGGAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
22 14 0.37
23 11 0.29
24 10 0.26
26 3 0.08
ACGTcount: A:0.83, C:0.04, G:0.12, T:0.01
Consensus pattern (23 bp):
AAACAAAAAAAAAAGAAAAAAGG
Done.