Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 303 of 433
Found at i:94657218 original size:42 final size:42
Alignment explanation
Indices: 94657159--94657460 Score: 417
Period size: 42 Copynumber: 7.2 Consensus size: 42
94657149 AAGGAAAGCA
*
94657159 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACCT
*
94657201 TTCATTGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACCT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACCT
* * * *
94657243 TTCATTGCATTTAG-GAACCTAGGTGTGGAGATCCATTTACGT
1 TTCATTGCATTTAGAG-GCCCAGGTGTGGAGGTCCATTTACCT
* *
94657285 TTCATTGCATTTAGAGGTCTAGGTGTGGAGGTCCATTTACCT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACCT
* * * * *
94657327 TTCATTGCATTTAGAAGCCCAAGCGTGGAGGTCCGTTTACGT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACCT
* * *
94657369 TTCATTGCATTTAGAGGCCTAAGTGTGGAGGCCCATTTACCT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACCT
* * *
94657411 TTCATTGCATTTAGAGGCCCAGGTGTGGAGATCTATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACCT
94657453 TTCATTGC
1 TTCATTGC
94657461 TTTGTATATG
Statistics
Matches: 229, Mismatches: 29, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
41 1 0.00
42 227 0.99
43 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACCT
Found at i:94658330 original size:19 final size:20
Alignment explanation
Indices: 94658308--94658361 Score: 51
Period size: 20 Copynumber: 2.7 Consensus size: 20
94658298 ATTTCGAAAT
94658308 AAAGCTTTGATTTTT-AAGA
1 AAAGCTTTGATTTTTAAAGA
*
94658327 AAAG-TAGTGATTTTTTAAAAGA
1 AAAGCT-TTGA-TTTTT-AAAGA
94658349 AAA-CTTTGATTTT
1 AAAGCTTTGATTTT
94658362 GCAAAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
18 1 0.04
19 7 0.25
20 9 0.32
21 3 0.11
22 8 0.29
ACGTcount: A:0.39, C:0.04, G:0.15, T:0.43
Consensus pattern (20 bp):
AAAGCTTTGATTTTTAAAGA
Found at i:94663424 original size:24 final size:24
Alignment explanation
Indices: 94663394--94663462 Score: 138
Period size: 24 Copynumber: 2.9 Consensus size: 24
94663384 TTAGTTGCGG
94663394 AAACGTAGTATATAAAAACTACGA
1 AAACGTAGTATATAAAAACTACGA
94663418 AAACGTAGTATATAAAAACTACGA
1 AAACGTAGTATATAAAAACTACGA
94663442 AAACGTAGTATATAAAAACTA
1 AAACGTAGTATATAAAAACTA
94663463 TGGTTTAGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.22
Consensus pattern (24 bp):
AAACGTAGTATATAAAAACTACGA
Found at i:94664608 original size:28 final size:28
Alignment explanation
Indices: 94664562--94664671 Score: 107
Period size: 28 Copynumber: 3.9 Consensus size: 28
94664552 ACATACCTAT
* * *
94664562 ATATAGCCCACTAGACCC-AATCTCTTTC
1 ATAT-GCCCATTAGGCCCAAATCACTTTC
*
94664590 ATATGACCCATGAGGCCCAAATCACATTT-
1 ATATG-CCCATTAGGCCCAAATCAC-TTTC
* *
94664619 ATATGGCCTATTAGGCCCAAATCACATTC
1 ATAT-GCCCATTAGGCCCAAATCACTTTC
*
94664648 ATATGGCCATTAGGCCCAAATCAC
1 ATATGCCCATTAGGCCCAAATCAC
94664672 ATTTGCAGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
27 1 0.01
28 33 0.49
29 30 0.44
30 4 0.06
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (28 bp):
ATATGCCCATTAGGCCCAAATCACTTTC
Found at i:94664622 original size:57 final size:57
Alignment explanation
Indices: 94664561--94664675 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 57
94664551 CACATACCTA
* *
94664561 TATATAGCCCACTAGACCC-AATCTCTTTCATATGACCCATGAGGCCCAAATCACATT
1 TATATAGCCCACTAGACCCAAATCACATTCATATG-CCCATGAGGCCCAAATCACATT
* * * * * *
94664618 TATATGGCCTATTAGGCCCAAATCACATTCATATGGCCATTAGGCCCAAATCACATT
1 TATATAGCCCACTAGACCCAAATCACATTCATATGCCCATGAGGCCCAAATCACATT
94664675 T
1 T
94664676 GCAGTCATGC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 36 0.73
58 13 0.27
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (57 bp):
TATATAGCCCACTAGACCCAAATCACATTCATATGCCCATGAGGCCCAAATCACATT
Found at i:94664672 original size:28 final size:28
Alignment explanation
Indices: 94664587--94664674 Score: 131
Period size: 29 Copynumber: 3.1 Consensus size: 28
94664577 CCCAATCTCT
* *
94664587 TTCATATGACCCATGAGGCCCAAATCACA
1 TTCATATG-GCCATTAGGCCCAAATCACA
*
94664616 TTTATATGGCCTATTAGGCCCAAATCACA
1 TTCATATGGCC-ATTAGGCCCAAATCACA
94664645 TTCATATGGCCATTAGGCCCAAATCACA
1 TTCATATGGCCATTAGGCCCAAATCACA
94664673 TT
1 TT
94664675 TGCAGTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
28 21 0.39
29 33 0.61
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
TTCATATGGCCATTAGGCCCAAATCACA
Found at i:94668663 original size:46 final size:45
Alignment explanation
Indices: 94668611--94668727 Score: 145
Period size: 41 Copynumber: 2.7 Consensus size: 45
94668601 GATATTTGGG
94668611 CATCCGAACTCATTGAGTTGAGTCCGAGTTCAATTATGGATGCGAA
1 CATCCGAACTC-TTGAGTTGAGTCCGAGTTCAATTATGGATGCGAA
*
94668657 CATCCGAACTC---A-TTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAA
* **
94668698 CGTTAGAACTCGTTGAGTTGAGT-CGAGTTC
1 CATCCGAACTC-TTGAGTTGAGTCCGAGTTC
94668728 GCTTATGGGC
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
41 36 0.58
42 1 0.02
45 8 0.13
46 17 0.27
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29
Consensus pattern (45 bp):
CATCCGAACTCTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAA
Found at i:94674516 original size:46 final size:46
Alignment explanation
Indices: 94674463--94674678 Score: 206
Period size: 46 Copynumber: 4.7 Consensus size: 46
94674453 GATATTTGGG
*
94674463 CATCCGAACTCGCTGAGTTGAGTCCGAGTTCAATTATAGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATAGATGCAAA
* *
94674509 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATAGATGCAAA
* * * * *
94674555 CGTCCAAACTCGTTGAGTTGAGTCCGAGTTC--GT-GAGATGTAACTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATAGATGCAA--A
* * * *
94674600 GGCATCCGAGCTCGTTGAGTTGAGTCCGACTTCACTTATGGATG-AGAA
1 --CATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATAGATGCA-AA
** * * *
94674648 CGCCCGAGCTCATTGAGTTGAGCCCGAGTTC
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC
94674679 GCTTATGGGC
Statistics
Matches: 141, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
43 6 0.04
44 1 0.01
45 1 0.01
46 98 0.70
47 27 0.19
48 1 0.01
49 2 0.01
50 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATAGATGCAAA
Found at i:94674627 original size:93 final size:93
Alignment explanation
Indices: 94674509--94674679 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
94674499 TAGATGCAAA
* * * *
94674509 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCCAAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATAGATGAGAACGCCCAAACTCATTGAGTT
*
94674574 GAGTCCGAGTTCGTGAGATGTAACTAGG
66 GAGCCCGAGTTCGTGAGATGTAACTAGG
* * * *
94674602 CATCCGAGCTCGTTGAGTTGAGTCCGACTTCACTTATGGATGAGAACGCCCGAGCTCATTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATAGATGAGAACGCCCAAACTCATTGAGTT
94674667 GAGCCCGAGTTCG
66 GAGCCCGAGTTCG
94674680 CTTATGGGCG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATAGATGAGAACGCCCAAACTCATTGAGTT
GAGCCCGAGTTCGTGAGATGTAACTAGG
Found at i:94679222 original size:2 final size:2
Alignment explanation
Indices: 94679209--94679241 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
94679199 ACAGTCATAC
*
94679209 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94679242 CACATCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:94685727 original size:30 final size:30
Alignment explanation
Indices: 94685693--94685753 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
94685683 TCCTTAACTC
94685693 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * * *
94685723 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
94685753 A
1 A
94685754 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:94689887 original size:9 final size:9
Alignment explanation
Indices: 94689875--94689900 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
94689865 ATTTAGACAA
94689875 CATTTAAAG
1 CATTTAAAG
94689884 CATTTAAAG
1 CATTTAAAG
94689893 CATTTAAA
1 CATTTAAA
94689901 ACATAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.35
Consensus pattern (9 bp):
CATTTAAAG
Found at i:94691564 original size:13 final size:12
Alignment explanation
Indices: 94691529--94691571 Score: 52
Period size: 11 Copynumber: 3.5 Consensus size: 12
94691519 ACCCATCTCC
94691529 TTATATATTTGT
1 TTATATATTTGT
*
94691541 TT-TATAATTGT
1 TTATATATTTGT
94691552 TTATAATATTTGT
1 TTAT-ATATTTGT
94691565 ATTATAT
1 -TTATAT
94691572 TATACTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 10 0.38
12 3 0.12
13 9 0.35
14 4 0.15
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
TTATATATTTGT
Found at i:94696932 original size:39 final size:39
Alignment explanation
Indices: 94696871--94697100 Score: 343
Period size: 39 Copynumber: 5.9 Consensus size: 39
94696861 ATGCAAGACA
*
94696871 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
94696910 CTGGAACTGTATCCGGGTTAAAGTCCCGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
94696949 CTGGAAATGTATCCGGGCCAAAGGCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
94696988 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
94697027 CTGGAAATGTATCCGGGCCAAAGTCCCACAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
94697066 CGGGAAATGTATCCGGGTTAAAGTCCCGCAAGCTT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
94697101 TGTACTGGTA
Statistics
Matches: 170, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 170 1.00
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:94699060 original size:25 final size:25
Alignment explanation
Indices: 94699031--94699078 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
94699021 TTATAATATG
* * *
94699031 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
94699056 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
94699079 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:94699129 original size:9 final size:9
Alignment explanation
Indices: 94699117--94699173 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
94699107 TTTGATAAAC
94699117 ATGATATGT
1 ATGATATGT
*
94699126 ATGATATGCAC
1 ATGATATG--T
*
94699137 ATGACATGT
1 ATGATATGT
*
94699146 ATGATATGCAC
1 ATGATATG--T
94699157 ATGATATGT
1 ATGATATGT
94699166 ATGATATG
1 ATGATATG
94699174 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:94699140 original size:20 final size:20
Alignment explanation
Indices: 94699115--94699185 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
94699105 ATTTTGATAA
94699115 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
94699135 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
94699155 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
94699175 ACATGAGATGT
1 ACATGATATGT
94699186 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:94699162 original size:11 final size:11
Alignment explanation
Indices: 94699126--94699180 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
94699116 CATGATATGT
94699126 ATGATATGCAC
1 ATGATATGCAC
* *
94699137 ATGACATG--T
1 ATGATATGCAC
94699146 ATGATATGCAC
1 ATGATATGCAC
*
94699157 ATGATATG--T
1 ATGATATGCAC
94699166 ATGATATGCAC
1 ATGATATGCAC
94699177 ATGA
1 ATGA
94699181 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:94699262 original size:23 final size:23
Alignment explanation
Indices: 94699232--94699398 Score: 271
Period size: 23 Copynumber: 7.1 Consensus size: 23
94699222 AGGAAGTGCA
94699232 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
94699255 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
94699279 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
94699302 AAAGGGCTTATGCCCTAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
94699326 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
94699349 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
94699372 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
94699396 AAA
1 AAA
94699399 AGAGGCTAGG
Statistics
Matches: 134, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
23 69 0.51
24 65 0.49
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:94699287 original size:24 final size:23
Alignment explanation
Indices: 94699231--94699420 Score: 265
Period size: 24 Copynumber: 8.0 Consensus size: 23
94699221 GAGGAAGTGC
94699231 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
94699254 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
94699277 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
94699301 TAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
94699324 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
94699348 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
94699372 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
94699396 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
94699420 A
1 A
94699421 TGATAAAGCA
Statistics
Matches: 151, Mismatches: 11, Indels: 9
0.88 0.06 0.05
Matches are distributed among these distances:
23 64 0.42
24 77 0.51
25 10 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:94699299 original size:47 final size:47
Alignment explanation
Indices: 94699230--94699398 Score: 311
Period size: 47 Copynumber: 3.6 Consensus size: 47
94699220 GGAGGAAGTG
94699230 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
94699277 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
94699324 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
94699371 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
94699399 AGAGGCTAGG
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:94707209 original size:25 final size:25
Alignment explanation
Indices: 94707180--94707227 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
94707170 TTATAATATG
* * *
94707180 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
94707205 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
94707228 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:94707278 original size:9 final size:9
Alignment explanation
Indices: 94707266--94707322 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
94707256 TTTGATAAAC
94707266 ATGATATGT
1 ATGATATGT
*
94707275 ATGATATGCAC
1 ATGATATG--T
*
94707286 ATGACATGT
1 ATGATATGT
*
94707295 ATGATATGCAC
1 ATGATATG--T
94707306 ATGATATGT
1 ATGATATGT
94707315 ATGATATG
1 ATGATATG
94707323 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:94707289 original size:20 final size:20
Alignment explanation
Indices: 94707264--94707334 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
94707254 ATTTTGATAA
94707264 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
94707284 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
94707304 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
94707324 ACATGAGATGT
1 ACATGATATGT
94707335 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:94707311 original size:11 final size:11
Alignment explanation
Indices: 94707275--94707329 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
94707265 CATGATATGT
94707275 ATGATATGCAC
1 ATGATATGCAC
* *
94707286 ATGACATG--T
1 ATGATATGCAC
94707295 ATGATATGCAC
1 ATGATATGCAC
*
94707306 ATGATATG--T
1 ATGATATGCAC
94707315 ATGATATGCAC
1 ATGATATGCAC
94707326 ATGA
1 ATGA
94707330 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:94707410 original size:23 final size:23
Alignment explanation
Indices: 94707380--94707499 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
94707370 AGGAAGTGCA
94707380 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
94707403 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
94707427 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
94707450 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
94707473 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
94707497 AAA
1 AAA
94707500 AGAGGCTAGG
Statistics
Matches: 92, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
23 48 0.52
24 44 0.48
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:94707435 original size:24 final size:23
Alignment explanation
Indices: 94707379--94707521 Score: 198
Period size: 24 Copynumber: 6.0 Consensus size: 23
94707369 GAGGAAGTGC
94707379 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
94707402 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
94707425 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
94707449 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
94707473 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
94707497 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
94707521 A
1 A
94707522 TGATAAAGCA
Statistics
Matches: 109, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
23 43 0.39
24 56 0.51
25 10 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:94707447 original size:47 final size:47
Alignment explanation
Indices: 94707378--94707499 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
94707368 GGAGGAAGTG
94707378 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
94707425 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
94707472 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
94707500 AGAGGCTAGG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:94710197 original size:40 final size:40
Alignment explanation
Indices: 94710131--94710297 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
94710121 AAATTGAATG
* * *
94710131 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
94710170 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
94710210 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
94710250 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
94710290 ATATCCGG
1 ATATCCGG
94710298 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:94718208 original size:40 final size:40
Alignment explanation
Indices: 94718149--94718290 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
94718139 AAATTGAATG
* * *
94718149 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
94718189 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
94718229 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
94718269 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
94718291 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:94718291 original size:40 final size:39
Alignment explanation
Indices: 94718188--94718316 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
94718178 TGCTGGAAAT
* * *
94718188 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
94718228 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
94718268 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
94718308 TATATCCGG
1 TATATCCGG
94718317 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:94729598 original size:40 final size:40
Alignment explanation
Indices: 94729553--94729719 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
94729543 CGGAATATAA
94729553 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
94729593 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
94729633 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
94729673 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
94729712 CCGGATAT
1 CCGGATAT
94729720 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94729703 original size:80 final size:79
Alignment explanation
Indices: 94729553--94729719 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
94729543 CGGAATATAA
* *
94729553 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
94729618 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
94729633 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
94729695 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
94729712 CCGGATAT
1 CCGGATAT
94729720 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:94730567 original size:17 final size:19
Alignment explanation
Indices: 94730544--94730589 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
94730534 AAGAAGCATG
94730544 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
94730562 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
94730580 AATCATGCTC
1 AATCATGCTC
94730590 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:94737604 original size:40 final size:40
Alignment explanation
Indices: 94737559--94737725 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
94737549 CGGAATATAA
94737559 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
94737599 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
94737639 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
94737679 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
94737718 CCGGATAT
1 CCGGATAT
94737726 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94737709 original size:80 final size:79
Alignment explanation
Indices: 94737559--94737725 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
94737549 CGGAATATAA
* *
94737559 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
94737624 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
94737639 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
94737701 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
94737718 CCGGATAT
1 CCGGATAT
94737726 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:94738574 original size:17 final size:19
Alignment explanation
Indices: 94738551--94738596 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
94738541 AAGAAGCATG
94738551 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
94738569 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
94738587 AATCATGCTC
1 AATCATGCTC
94738597 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:94739418 original size:56 final size:56
Alignment explanation
Indices: 94739358--94739463 Score: 185
Period size: 56 Copynumber: 1.9 Consensus size: 56
94739348 AAGTATGATA
* * *
94739358 ATGTATTGTTTTTTGATATTTACATACTTACTTACTAAGCTATAATGCTTGCTATG
1 ATGTATTGTTTATTAATATTTACATACTTACCTACTAAGCTATAATGCTTGCTATG
94739414 ATGTATTGTTTATTAATATTTACATACTTACCTACTAAGCTATAATGCTT
1 ATGTATTGTTTATTAATATTTACATACTTACCTACTAAGCTATAATGCTT
94739464 ACTCCCTTCC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.47
Consensus pattern (56 bp):
ATGTATTGTTTATTAATATTTACATACTTACCTACTAAGCTATAATGCTTGCTATG
Found at i:94740010 original size:77 final size:77
Alignment explanation
Indices: 94739878--94740034 Score: 181
Period size: 77 Copynumber: 2.0 Consensus size: 77
94739868 GAGTTAAGCT
* * * *** * *
94739878 ATGAATATCAGCTAATTTGGCTTTGGGGCATGATATTAGCACTTCGGGTGCAAGTTATATCGGTT
1 ATGAATATCAACTAATTTAGCTTCGGGGCATGATATTAGCACTTCAAATGCAAGTTACATCGATT
94739943 TGGCTTCGGGCC
66 TGGCTTCGGGCC
* * * * *
94739955 ATGAATATCAACTGATTTAGCTTCGGGGCATGATATCT-GTACTTCAAATGTAAGTTACCTTGAT
1 ATGAATATCAACTAATTTAGCTTCGGGGCATGATAT-TAGCACTTCAAATGCAAGTTACATCGAT
94740019 TTGGCTTCGGGCC
65 TTGGCTTCGGGCC
94740032 ATG
1 ATG
94740035 GTATAGATAC
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
77 65 0.98
78 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.34
Consensus pattern (77 bp):
ATGAATATCAACTAATTTAGCTTCGGGGCATGATATTAGCACTTCAAATGCAAGTTACATCGATT
TGGCTTCGGGCC
Found at i:94743332 original size:12 final size:12
Alignment explanation
Indices: 94743315--94743345 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
94743305 ATACCAAAGT
94743315 GTTTGAAATGAA
1 GTTTGAAATGAA
94743327 GTTTGAAATGAA
1 GTTTGAAATGAA
94743339 GTTTGAA
1 GTTTGAA
94743346 TTGATGCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.35
Consensus pattern (12 bp):
GTTTGAAATGAA
Found at i:94745511 original size:20 final size:20
Alignment explanation
Indices: 94745486--94745523 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
94745476 GTTTATTCGC
*
94745486 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
94745506 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
94745524 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:94758171 original size:93 final size:93
Alignment explanation
Indices: 94758059--94758229 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
94758049 GCCCATAAGT
* *
94758059 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94758124 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
94758152 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94758217 CGAGTTCGGATGC
66 CGAGTTCGGATGC
94758230 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94758245 original size:46 final size:46
Alignment explanation
Indices: 94758051--94758231 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
94758041 TGTAACCCGC
* * *
94758051 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
94758097 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
94758147 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
94758190 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
94758232 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:94760646 original size:29 final size:29
Alignment explanation
Indices: 94760607--94760694 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
94760597 CAAAGATAAC
*
94760607 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
94760636 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
94760665 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
94760695 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:94760665 original size:15 final size:15
Alignment explanation
Indices: 94760607--94760685 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
94760597 CAAAGATAAC
*
94760607 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
94760621 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
94760636 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
94760650 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
94760665 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
94760680 AAGAAA
1 AAGAAA
94760686 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:94760694 original size:15 final size:15
Alignment explanation
Indices: 94760618--94760694 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
94760608 AGAAAACCGA
94760618 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
94760633 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
94760647 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
94760661 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
94760677 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
94760692 ATA
1 ATA
94760695 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:94763757 original size:93 final size:93
Alignment explanation
Indices: 94763645--94763815 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
94763635 GCCCATAAGT
* *
94763645 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94763710 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
94763738 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94763803 CGAGTTCGGATGC
66 CGAGTTCGGATGC
94763816 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94763831 original size:46 final size:46
Alignment explanation
Indices: 94763637--94763817 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
94763627 TGTAACCCGC
* * *
94763637 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
94763683 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
94763733 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
94763776 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
94763818 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:94766919 original size:20 final size:19
Alignment explanation
Indices: 94766894--94766931 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
94766884 TAAAATTATA
*
94766894 AATTTTTATATATTTTTTAG
1 AATTTTTAGA-ATTTTTTAG
94766914 AATTTTTAGAATTTTTTA
1 AATTTTTAGAATTTTTTA
94766932 AATATAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
AATTTTTAGAATTTTTTAG
Found at i:94766941 original size:24 final size:24
Alignment explanation
Indices: 94766914--94766960 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
94766904 TATTTTTTAG
*
94766914 AATTTTTAGAATTTTT-TAAATATA
1 AATTTTGA-AATTTTTATAAATATA
94766938 AATTTTGAAATTTTTATAAATAT
1 AATTTTGAAATTTTTATAAATAT
94766961 TTTGAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (24 bp):
AATTTTGAAATTTTTATAAATATA
Found at i:94766970 original size:19 final size:20
Alignment explanation
Indices: 94766939--94766990 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
94766929 TTAAATATAA
*
94766939 ATTTTGAAATTTTTATAAA-T
1 ATTTTG-AATTTTTAAAAATT
94766959 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
94766978 ATTTTGAATTTTT
1 ATTTTGAATTTTT
94766991 TTGTAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 8 0.28
19 11 0.38
20 10 0.34
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.58
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:94771026 original size:24 final size:25
Alignment explanation
Indices: 94770978--94771026 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
94770968 TAATCTATTT
* *
94770978 CTTTAAAGAAAATTAATCTACTTAG
1 CTTTAAAGAAAAGTAATATACTTAG
*
94771003 CTTTAAA-AAAAGTAATATAGTTAG
1 CTTTAAAGAAAAGTAATATACTTAG
94771027 ATTAAAATCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (25 bp):
CTTTAAAGAAAAGTAATATACTTAG
Found at i:94776938 original size:40 final size:40
Alignment explanation
Indices: 94776836--94777019 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
94776826 AAATTGAATG
* * * * *
94776836 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
94776876 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
94776916 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
94776956 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
94776996 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
94777020 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:94777044 original size:80 final size:80
Alignment explanation
Indices: 94776878--94777064 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
94776868 TGAAAATTAT
* * *
94776878 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
* *
94776943 CGTGCAAGTTGTTAA
66 CGTGCAAGTTATCAA
* * * * * *
94776958 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGGCAT
* **
94777022 TGGTGCGGGTTATCATA
65 TCGTGCAAGTTATCA-A
* * *
94777039 A-CCGGGCTATGTCCCGAAGGCGATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
94777065 AACGAGCAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 84 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTATCAA
Found at i:94784987 original size:39 final size:40
Alignment explanation
Indices: 94784929--94785029 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
94784919 AAATTGAATG
* *
94784929 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
94784968 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
94785008 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
94785030 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:94785022 original size:40 final size:40
Alignment explanation
Indices: 94784929--94785111 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
94784919 AAATTGAATG
* * * * *
94784929 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
94784968 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
94785008 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
94785048 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
94785088 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
94785112 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:94790335 original size:40 final size:40
Alignment explanation
Indices: 94790290--94790457 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
94790280 CGGAATATAA
94790290 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
94790330 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
94790370 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
94790410 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
94790450 CCGGATAT
1 CCGGATAT
94790458 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94793306 original size:40 final size:40
Alignment explanation
Indices: 94793261--94793428 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
94793251 CGGAATATAA
94793261 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
94793301 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
94793341 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
94793381 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
94793421 CCGGATAT
1 CCGGATAT
94793429 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94801318 original size:40 final size:40
Alignment explanation
Indices: 94801273--94801440 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
94801263 CGGAATATAA
94801273 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
94801313 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
94801353 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
94801393 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
94801433 CCGGATAT
1 CCGGATAT
94801441 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94804606 original size:15 final size:15
Alignment explanation
Indices: 94804588--94804616 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
94804578 ATATTTATAA
94804588 AATTATTATTATTAT
1 AATTATTATTATTAT
94804603 AATTATTATTATTA
1 AATTATTATTATTA
94804617 GATAGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:94806274 original size:8 final size:8
Alignment explanation
Indices: 94806261--94806298 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
94806251 CTAGATCGGC
94806261 AAAAGCCG
1 AAAAGCCG
*
94806269 AAAAGCAG
1 AAAAGCCG
94806277 AAAAGCCG
1 AAAAGCCG
94806285 AAAAGCCG
1 AAAAGCCG
94806293 AAAAGC
1 AAAAGC
94806299 TTGCATTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.55, C:0.21, G:0.24, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:94807047 original size:60 final size:59
Alignment explanation
Indices: 94806923--94807059 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 59
94806913 CCCAACTGTG
* *
94806923 TTGATATGGGCAAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATTGATA
1 TTGATATGGGCTAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATTAATA
* * *
94806982 CTGATATGGGCTAGGCCCAGTATA-CTCTGTTAC-TGTA-AGGGGCTATGGCCCAGATTAATA
1 TTGATATGGGCTAGGCCCAATATATCTC-G--ACTTGTATA-GGGCTACGGCCCAGATTAATA
94807042 TTGATATGGGCTAAGGCC
1 TTGATATGGGCT-AGGCC
94807060 TAGTTAACAC
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
58 3 0.04
59 23 0.34
60 34 0.51
61 7 0.10
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (59 bp):
TTGATATGGGCTAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATTAATA
Found at i:94809155 original size:40 final size:40
Alignment explanation
Indices: 94809110--94809239 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
94809100 CGGAATACAA
94809110 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
94809150 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
94809190 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
94809230 CCGGATATAA
1 CCGGATATAA
94809240 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:94809254 original size:40 final size:40
Alignment explanation
Indices: 94809110--94809272 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
94809100 CGGAATACAA
* **
94809110 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
94809150 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
94809190 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
94809230 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
94809269 CCGG
1 CCGG
94809273 TATCATTCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:94812115 original size:40 final size:40
Alignment explanation
Indices: 94812032--94812239 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
94812022 CGGGATTTAA
* * * * * *
94812032 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
94812072 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
94812112 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
94812152 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
94812192 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
94812232 CCGGATAT
1 CCGGATAT
94812240 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:94812152 original size:80 final size:80
Alignment explanation
Indices: 94812058--94812239 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
94812048 GCTCGATTGT
* * *** * * * **
94812058 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
94812123 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
94812138 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
94812203 TACTAGCATAATTGC
66 AACTAGCACAAATGC
94812218 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
94812240 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:94820157 original size:40 final size:40
Alignment explanation
Indices: 94820074--94820281 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
94820064 CGGGATTTAA
* * * * * *
94820074 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
94820114 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
94820154 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
94820194 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
94820234 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
94820274 CCGGATAT
1 CCGGATAT
94820282 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:94820194 original size:80 final size:80
Alignment explanation
Indices: 94820100--94820281 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
94820090 GCTCGATTGT
* * *** * * * **
94820100 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
94820165 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
94820180 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
94820245 TACTAGCATAATTGC
66 AACTAGCACAAATGC
94820260 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
94820282 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:94822653 original size:29 final size:29
Alignment explanation
Indices: 94822592--94822702 Score: 145
Period size: 29 Copynumber: 3.9 Consensus size: 29
94822582 CCCTTACATG
* *
94822592 CATATGGCCCACTAAGCCC-AATC-TCATT
1 CATATGGCCCATTAGGCCCAAATCAT-ATT
*
94822620 CATATGGCCCATTAGGCCCAAATCATATC
1 CATATGGCCCATTAGGCCCAAATCATATT
*
94822649 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCATATT
**
94822678 CATATGGCCCATCCGGCCCAAATCA
1 CATATGGCCCATTAGGCCCAAATCA
94822703 ATTACAAGCC
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 17 0.23
29 56 0.76
30 1 0.01
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.23
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCATATT
Found at i:94822696 original size:58 final size:57
Alignment explanation
Indices: 94822592--94822702 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 57
94822582 CCCTTACATG
* *
94822592 CATATGGCCCACTAAGCCCAATCTCATTCATATGGCCCATTAGGCCCAAATCATATC
1 CATATGGCCCACTAAGCCCAATCACATTCATATGGCCCATCAGGCCCAAATCATATC
* * *
94822649 CATATGGCCCATTAGGCCCAAATCACATTCATATGGCCCATCCGGCCCAAATCA
1 CATATGGCCCACTAAGCCC-AATCACATTCATATGGCCCATCAGGCCCAAATCA
94822703 ATTACAAGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 17 0.35
58 31 0.65
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.23
Consensus pattern (57 bp):
CATATGGCCCACTAAGCCCAATCACATTCATATGGCCCATCAGGCCCAAATCATATC
Found at i:94824887 original size:18 final size:18
Alignment explanation
Indices: 94824861--94824899 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
94824851 TCTTATTTAA
*
94824861 CTTTTAACCTTTCATCTT
1 CTTTAAACCTTTCATCTT
94824879 CTTTAAACCTTTCATCTT
1 CTTTAAACCTTTCATCTT
94824897 CTT
1 CTT
94824900 CTAACCCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.28, G:0.00, T:0.54
Consensus pattern (18 bp):
CTTTAAACCTTTCATCTT
Found at i:94824905 original size:18 final size:17
Alignment explanation
Indices: 94824863--94824905 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 17
94824853 TTATTTAACT
94824863 TTTAACCTTTCATCTTC
1 TTTAACCTTTCATCTTC
94824880 TTTAAACCTTTCATCTTC
1 TTT-AACCTTTCATCTTC
94824898 TTCTAACC
1 TT-TAACC
94824906 CCTTTCCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.12
18 20 0.83
19 1 0.04
ACGTcount: A:0.21, C:0.30, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTAACCTTTCATCTTC
Found at i:94826621 original size:35 final size:35
Alignment explanation
Indices: 94826581--94826649 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
94826571 AGGTCCTTAT
* *
94826581 ATGGTAATTAGACCATTTTACTTTAATTTGGACAG
1 ATGGTAATTAGACCATTTCACTTTAAGTTGGACAG
94826616 ATGGTAATTAGACCATTTCACTTTAAGTTGGACA
1 ATGGTAATTAGACCATTTCACTTTAAGTTGGACA
94826650 AAAAAAGACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (35 bp):
ATGGTAATTAGACCATTTCACTTTAAGTTGGACAG
Found at i:94829001 original size:42 final size:42
Alignment explanation
Indices: 94828901--94829048 Score: 124
Period size: 42 Copynumber: 3.5 Consensus size: 42
94828891 TGAGTTGTCG
* * * *
94828901 TGTAAGACCATGTTTGGGAC-GTTGGCGTCGAT-TTGAGATTTACG
1 TGTAAGACCATGTCTGGGACAG-TAGCATCGATATT--GA-TTACA
* *
94828945 TGTAAGACAATGTCTGGGACA-TAAGCATC-ATATTTGATTTCA
1 TGTAAGACCATGTCTGGGACAGT-AGCATCGATA-TTGATTACA
* * *
94828987 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTGGTTACA
1 TGTAAGACCATGTCTGGGACAGTAGCATCGATATTGATTACA
*
94829029 TGTAAGACCATGTCGGGGAC
1 TGTAAGACCATGTCTGGGAC
94829049 GTTGGAATTG
Statistics
Matches: 85, Mismatches: 13, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
42 52 0.61
43 9 0.11
44 22 0.26
45 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGTAGCATCGATATTGATTACA
Found at i:94835598 original size:39 final size:40
Alignment explanation
Indices: 94835531--94835672 Score: 126
Period size: 40 Copynumber: 3.6 Consensus size: 40
94835521 TATGGTAACC
* * * * * ** *
94835531 CGCACCAAGGCCTACGGGACTTAACCCGGATATCACGATT
1 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACT
* *
94835571 TGCACAAATGCCTTC-GGTCTTAGCCCGGATAGAATGACT
1 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACT
* * *
94835610 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACT
1 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AACGACT
* *
94835650 AGCACAATTGCCTTCGGGTCTTA
1 CGCACAAATGCCTTCGGGTCTTA
94835673 ACCCAGTTAT
Statistics
Matches: 82, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 32 0.39
40 50 0.61
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (40 bp):
CGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACT
Found at i:94844285 original size:22 final size:22
Alignment explanation
Indices: 94844255--94844299 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
94844245 TTTCTTATTT
94844255 AGTTATGAACTAAAACCCCTAA
1 AGTTATGAACTAAAACCCCTAA
* *
94844277 AGTTGTGAACTAAAAGCCCTAA
1 AGTTATGAACTAAAACCCCTAA
94844299 A
1 A
94844300 TACCTAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.22
Consensus pattern (22 bp):
AGTTATGAACTAAAACCCCTAA
Found at i:94856221 original size:22 final size:22
Alignment explanation
Indices: 94856196--94856256 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 22
94856186 GCAAATACGT
*
94856196 TTGGCATACAGCCATAAACAGG
1 TTGGCATAAAGCCATAAACAGG
* * ***
94856218 TTGGCACAGAGCCATATGTAGG
1 TTGGCATAAAGCCATAAACAGG
*
94856240 TTGGCGTAAAGCCATAA
1 TTGGCATAAAGCCATAA
94856257 TCAGAATAAT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (22 bp):
TTGGCATAAAGCCATAAACAGG
Found at i:94856461 original size:41 final size:41
Alignment explanation
Indices: 94856404--94856523 Score: 177
Period size: 41 Copynumber: 2.9 Consensus size: 41
94856394 AAGCCACCGG
* *
94856404 TGGATCCACGGTCGTCAACCAACCATGCGATCCTTAATCGC
1 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCAC
* * *
94856445 TGGATCCACGGTCGTCAAGCAACCATGCGACCCTCAATCAT
1 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCAC
* *
94856486 TGGATACACGGTCGTCAAGTAACCATGCGATCCTTAAT
1 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
94856524 TTCTTCCTCC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.23
Consensus pattern (41 bp):
TGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCAC
Found at i:94856821 original size:27 final size:27
Alignment explanation
Indices: 94856783--94856962 Score: 143
Period size: 27 Copynumber: 6.6 Consensus size: 27
94856773 GGTAAATCTA
* *
94856783 CAAACCAATGGTATTTCGATAATTTTG
1 CAAATCAAGGGTATTTCGATAATTTTG
* * *
94856810 CAAACCAATGGTATTTCTATAATTTGTG
1 CAAATCAAGGGTATTTCGATAATTT-TG
94856838 -AAAGTCAAGGGTATTTCTG-TAATTTTG
1 CAAA-TCAAGGGTATTTC-GATAATTTTG
* * ** *
94856865 TAAATCAGGGGTATTTATATAATTTTC
1 CAAATCAAGGGTATTTCGATAATTTTG
* *
94856892 CAAATCAAGGGTATTT-TAGTAATTTTC
1 CAAATCAAGGGTATTTCGA-TAATTTTG
* *
94856919 CAAATCAGGGGTATTTTCG-TAATTTTA
1 CAAATCAAGGGTA-TTTCGATAATTTTG
* *
94856946 CAAATCGAGGATATTTC
1 CAAATCAAGGGTATTTC
94856963 AGTTATTTTA
Statistics
Matches: 129, Mismatches: 16, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
26 6 0.05
27 98 0.76
28 25 0.19
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGATAATTTTG
Found at i:94856878 original size:55 final size:54
Alignment explanation
Indices: 94856783--94857023 Score: 170
Period size: 54 Copynumber: 4.4 Consensus size: 54
94856773 GGTAAATCTA
* * * ** *
94856783 CAAACCAATGGTATTTC-GATAATTTTGCAAACCAATGGTATTTCTATAATTTGT-
1 CAAATCAAGGGTATTTCTG-TAATTTTGCAAATCAGGGGTATTTATATAATTT-TC
* *
94856837 GAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTATATAATTTTC
1 CAAA-TCAAGGGTATTTCTGTAATTTTGCAAATCAGGGGTATTTATATAATTTTC
* * *
94856892 CAAATCAAGGGTATTT-TAGTAATTTTCCAAATCAGGGGTATTT-TCGTAATTTTA
1 CAAATCAAGGGTATTTCT-GTAATTTTGCAAATCAGGGGTATTTAT-ATAATTTTC
* * * * * * * *
94856946 CAAATCGAGGATATTTCAGTTATTTTAG-AAATTAGGGGCATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCTGTAATTTT-GCAAATCAGGGGTATTTAT-ATAATTTTC
* * * *
94857000 TAAACCAAAGGTATTTCAGTAATT
1 CAAATCAAGGGTATTTCTGTAATT
94857024 CTACCCTACA
Statistics
Matches: 153, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
53 2 0.01
54 108 0.71
55 42 0.27
56 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (54 bp):
CAAATCAAGGGTATTTCTGTAATTTTGCAAATCAGGGGTATTTATATAATTTTC
Found at i:94856970 original size:27 final size:26
Alignment explanation
Indices: 94856845--94857023 Score: 119
Period size: 27 Copynumber: 6.7 Consensus size: 26
94856835 GTGAAAGTCA
* **
94856845 AGGGTATTTCTGTAATTTTGTAAATC
1 AGGGTATTTCAGTAATTTTACAAATC
* *
94856871 AGGGGTATTT-ATATAATTTTCCAAATC
1 A-GGGTATTTCA-GTAATTTTACAAATC
* *
94856898 AAGGGTATTTTAGTAATTTTCCAAATC
1 -AGGGTATTTCAGTAATTTTACAAATC
94856925 AGGGGTATTTTC-GTAATTTTACAAATC
1 A-GGGTA-TTTCAGTAATTTTACAAATC
* * * *
94856952 GAGGATATTTCAGTTATTTTAGAAATT
1 -AGGGTATTTCAGTAATTTTACAAATC
* ** * *
94856979 AGGGGCATTTTGGTAATTTTATAAACC
1 A-GGGTATTTCAGTAATTTTACAAATC
*
94857006 AAAGGTATTTCAGTAATT
1 -AGGGTATTTCAGTAATT
94857024 CTACCCTACA
Statistics
Matches: 120, Mismatches: 23, Indels: 19
0.74 0.14 0.12
Matches are distributed among these distances:
26 7 0.06
27 106 0.88
28 7 0.06
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (26 bp):
AGGGTATTTCAGTAATTTTACAAATC
Found at i:94859348 original size:21 final size:22
Alignment explanation
Indices: 94859319--94859365 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
94859309 CAGACAGATT
94859319 ACCAGCCCGGT-CCAACCAACAC
1 ACCAGCCC-GTACCAACCAACAC
*
94859341 ACCA-CCCGTACCAACCAGCAC
1 ACCAGCCCGTACCAACCAACAC
94859362 ACCA
1 ACCA
94859366 TGTGGGGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 2 0.09
21 17 0.74
22 4 0.17
ACGTcount: A:0.34, C:0.51, G:0.11, T:0.04
Consensus pattern (22 bp):
ACCAGCCCGTACCAACCAACAC
Found at i:94859718 original size:22 final size:22
Alignment explanation
Indices: 94859681--94859745 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
94859671 GCAAATACGT
* *
94859681 TTGGCACACAGTCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
94859703 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
94859725 TTGACGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
94859746 AATAATTGGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:94859946 original size:41 final size:41
Alignment explanation
Indices: 94859889--94860005 Score: 189
Period size: 41 Copynumber: 2.9 Consensus size: 41
94859879 AAAGCCACCA
* * *
94859889 GTGGATCCACGATCGTCACGCAACCATGCGATCTTTAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
94859930 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
**
94859971 GTGGATCCATAGTCGTCAAGCAACCATGCGATCCT
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCT
94860006 CAATTTCTTC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
Found at i:94860299 original size:27 final size:27
Alignment explanation
Indices: 94860247--94860510 Score: 167
Period size: 27 Copynumber: 9.7 Consensus size: 27
94860237 TTTCCCCCTA
* * * *
94860247 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
94860274 CAAGGGTATTTTGGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
94860301 CAATGGTATTTCT-GTAATTTGTGA-AAGT
1 CAAGGGTATTT-TGGTAATTT-T-ACAAAT
* * **
94860329 CAAAGGTATTTTTTGTAATTTTGTAAAT
1 CAAGGGTA-TTTTGGTAATTTTACAAAT
* *
94860357 CAGGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* * * *
94860384 TAGGGGTATTTTGGCAATGTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * * * **
94860411 TGAGAGTATTTCGGTAATTTTATAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
94860438 CGAGGTTATTTTGGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
94860465 C-AGGAGTATTTTTGTAATTTTACAAAC
1 CAAGG-GTATTTTGGTAATTTTACAAAT
*
94860492 CAAGGGTATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
94860511 CTACCTTACA
Statistics
Matches: 186, Mismatches: 41, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
26 4 0.02
27 146 0.78
28 26 0.14
29 10 0.05
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:94860502 original size:54 final size:54
Alignment explanation
Indices: 94860267--94860510 Score: 188
Period size: 54 Copynumber: 4.5 Consensus size: 54
94860257 TTGGTAAATC
* * * *
94860267 TACAAACCAAGGGTATTTTGGTAATTTTGCAAACCAATG-GTATTTCTGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAATC-AGGAGTATTTCTGTAATTT
* * * ** *
94860321 GTGA-AAGTCAAAGGTATTTTTTGTAATTTTGTAAATCAGGGGTATTTCTGTAATTT
1 -T-ACAAATCAAGGGTA-TTTTGGTAATTTTACAAATCAGGAGTATTTCTGTAATTT
* * * * * * *
94860377 TCCAAATTAGGGGTATTTTGGCAATGTTACAAAT-TGAGAGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAATCAG-GAGTATTTCTGTAATTT
* ** * * * *
94860431 TATAGGTCGAGGTTATTTTGGTAATTTCACAAATCAGGAGTATTTTTGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAATCAGGAGTATTTCTGTAATTT
* *
94860485 TACAAACCAAGGGTATTTTAGTAATT
1 TACAAATCAAGGGTATTTTGGTAATT
94860511 CTACCTTACA
Statistics
Matches: 142, Mismatches: 41, Indels: 13
0.72 0.21 0.07
Matches are distributed among these distances:
53 1 0.01
54 86 0.61
55 22 0.15
56 33 0.23
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTTGGTAATTTTACAAATCAGGAGTATTTCTGTAATTT
Found at i:94862448 original size:26 final size:26
Alignment explanation
Indices: 94862414--94862466 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
94862404 AAAGTATGAG
94862414 TAAGCATACATAAATACACAAACCTT
1 TAAGCATACATAAATACACAAACCTT
94862440 TAAGCATACATAAATACACAAACCTT
1 TAAGCATACATAAATACACAAACCTT
94862466 T
1 T
94862467 CTCTTTGTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.23, G:0.04, T:0.25
Consensus pattern (26 bp):
TAAGCATACATAAATACACAAACCTT
Found at i:94867331 original size:29 final size:28
Alignment explanation
Indices: 94867297--94867399 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
94867287 TACTCAATCA
*
94867297 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
94867326 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* * *
94867355 CGCACACTTAGTGTCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
94867384 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
94867400 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 2 0.03
29 57 0.97
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:94873555 original size:29 final size:28
Alignment explanation
Indices: 94873521--94873623 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
94873511 TACTCAATCA
*
94873521 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
94873550 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* * *
94873579 CGCACACTTAGCGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
94873608 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
94873624 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 2 0.03
29 57 0.97
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:94875249 original size:40 final size:40
Alignment explanation
Indices: 94875194--94875431 Score: 330
Period size: 40 Copynumber: 6.1 Consensus size: 40
94875184 TGGATGATAA
* * *
94875194 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
94875234 CCGGGCTAAGTCCCGAAGGCATTTGT---AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
94875271 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
94875311 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
94875350 -CGGGCTAAGTCCCG-AGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
94875388 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
94875428 CCGG
1 CCGG
94875432 TTCAATCCCG
Statistics
Matches: 182, Mismatches: 8, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
36 1 0.01
37 34 0.19
38 33 0.18
39 45 0.25
40 69 0.38
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:94875321 original size:77 final size:78
Alignment explanation
Indices: 94875194--94875406 Score: 319
Period size: 77 Copynumber: 2.8 Consensus size: 78
94875184 TGGATGATAA
* * *
94875194 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
*
94875258 GT-AGTTACTATAT
65 GTGAGATACTATAT
94875271 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
94875335 TGCGAGATACTATAT
66 T--GAGATACTATAT
*
94875350 -CGGGCTAAGTCCCG-AGGCATTTGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
94875407 TATTCGAGCG
Statistics
Matches: 126, Mismatches: 5, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
76 15 0.12
77 80 0.63
78 21 0.17
79 10 0.08
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGAGATACTATAT
Found at i:94875401 original size:117 final size:117
Alignment explanation
Indices: 94875194--94875431 Score: 326
Period size: 117 Copynumber: 2.0 Consensus size: 117
94875184 TGGATGATAA
*
94875194 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
* *
94875259 TAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
66 TAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
*
94875311 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGAT-ACTA-TAT-CGGGCTAAGTCCCG-AGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* *
94875371 TGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGTATTCGAGCGAGTAGCTATAT
64 TGT---AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
94875428 CCGG
1 CCGG
94875432 TTCAATCCCG
Statistics
Matches: 109, Mismatches: 6, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
114 10 0.09
115 15 0.14
116 24 0.22
117 60 0.55
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (117 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
TAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
Found at i:94883442 original size:40 final size:40
Alignment explanation
Indices: 94883292--94883455 Score: 215
Period size: 40 Copynumber: 4.1 Consensus size: 40
94883282 TGGATGATAA
* * * *
94883292 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACCAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
94883332 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
94883372 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
94883412 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
94883452 CCGG
1 CCGG
94883456 TTCAATCCCG
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.03
40 109 0.97
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:94890931 original size:17 final size:17
Alignment explanation
Indices: 94890909--94890941 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
94890899 CAACATGATA
94890909 AATTAAAATAATTAATT
1 AATTAAAATAATTAATT
*
94890926 AATTAAAATTATTAAT
1 AATTAAAATAATTAAT
94890942 ATGAGTAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTAAAATAATTAATT
Found at i:94891856 original size:21 final size:21
Alignment explanation
Indices: 94891832--94891885 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
94891822 AATTATAAAA
*
94891832 AATCTTTTTTTTACA-AATTTT
1 AATCTTTTTTTTACACAA-GTT
*
94891853 AATCATTTTTTT-CACAAGTT
1 AATCTTTTTTTTACACAAGTT
*
94891873 AATATTTTTTTTA
1 AATCTTTTTTTTA
94891886 TTTTTGTGCA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (21 bp):
AATCTTTTTTTTACACAAGTT
Found at i:94892015 original size:13 final size:14
Alignment explanation
Indices: 94891997--94892029 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
94891987 CAGAACCCCG
94891997 AACCTTGAA-CTCA
1 AACCTTGAATCTCA
*
94892010 AACCTTGAATCTTA
1 AACCTTGAATCTCA
94892024 AACCTT
1 AACCTT
94892030 AAACCCTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.30
Consensus pattern (14 bp):
AACCTTGAATCTCA
Found at i:94892134 original size:27 final size:27
Alignment explanation
Indices: 94892095--94892148 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
94892085 GGGTTTAGGT
94892095 TTTGGGTTCAAGGTTCAAGGGTTTGAG
1 TTTGGGTTCAAGGTTCAAGGGTTTGAG
* *
94892122 TTTGGGTTTAAGGTTTAAGGGTTTGAG
1 TTTGGGTTCAAGGTTCAAGGGTTTGAG
94892149 GTTACTAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.19, C:0.04, G:0.37, T:0.41
Consensus pattern (27 bp):
TTTGGGTTCAAGGTTCAAGGGTTTGAG
Found at i:94892853 original size:21 final size:21
Alignment explanation
Indices: 94892826--94892882 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
94892816 AAACTCCAAT
*
94892826 CCCAAAACCCCAAACACTAAA
1 CCCAAAACCACAAACACTAAA
* * * *
94892847 TCTAAAATCACAAACATTAAA
1 CCCAAAACCACAAACACTAAA
*
94892868 CCCAAAACCATAAAC
1 CCCAAAACCACAAAC
94892883 TCAAATGTCA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.54, C:0.33, G:0.00, T:0.12
Consensus pattern (21 bp):
CCCAAAACCACAAACACTAAA
Found at i:94893087 original size:27 final size:28
Alignment explanation
Indices: 94893052--94893112 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
94893042 TGGGATTCAG
*
94893052 GGTTTAAGGTTTAAGATTCTGGGTTCGA
1 GGTTCAAGGTTTAAGATTCTGGGTTCGA
* *
94893080 -GTTCAAGGTTTAAGGTTCTGGGTTTGA
1 GGTTCAAGGTTTAAGATTCTGGGTTCGA
94893107 GGTTCA
1 GGTTCA
94893113 TGGTAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.20, C:0.08, G:0.33, T:0.39
Consensus pattern (28 bp):
GGTTCAAGGTTTAAGATTCTGGGTTCGA
Found at i:94895312 original size:14 final size:14
Alignment explanation
Indices: 94895289--94895327 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
94895279 TGTTTTATTT
*
94895289 AAAATGATTTTTAA
1 AAAATAATTTTTAA
94895303 AAAATAATTTTTTAA
1 AAAATAA-TTTTTAA
94895318 AAAATAATTT
1 AAAATAATTT
94895328 ACTTTTTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (14 bp):
AAAATAATTTTTAA
Found at i:94895314 original size:15 final size:15
Alignment explanation
Indices: 94895296--94895327 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
94895286 TTTAAAATGA
94895296 TTTTTAAAAAATAAT
1 TTTTTAAAAAATAAT
94895311 TTTTTAAAAAATAAT
1 TTTTTAAAAAATAAT
94895326 TT
1 TT
94895328 ACTTTTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTTTAAAAAATAAT
Found at i:94895583 original size:45 final size:45
Alignment explanation
Indices: 94895519--94895609 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
94895509 AAATAATAAA
94895519 TCTTCATGATGTTAAGGATTAAATTGTAAACTTTGTGAATTTTTT
1 TCTTCATGATGTTAAGGATTAAATTGTAAACTTTGTGAATTTTTT
94895564 TCTTCATGATGTTAAGGATTAAATTGTAAACTTTGTGAATTTTTT
1 TCTTCATGATGTTAAGGATTAAATTGTAAACTTTGTGAATTTTTT
94895609 T
1 T
94895610 TTCTTGAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (45 bp):
TCTTCATGATGTTAAGGATTAAATTGTAAACTTTGTGAATTTTTT
Found at i:94898828 original size:40 final size:40
Alignment explanation
Indices: 94898773--94898952 Score: 274
Period size: 40 Copynumber: 4.5 Consensus size: 40
94898763 CATTTGAATG
94898773 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
94898813 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
94898853 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
94898893 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
94898933 ATATCC-GGCTAA-ATCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
94898953 AAACTTGGGT
Statistics
Matches: 129, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
38 7 0.05
39 5 0.04
40 117 0.91
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:94906813 original size:40 final size:40
Alignment explanation
Indices: 94906758--94906938 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
94906748 CATTTGAATG
94906758 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
94906798 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
94906838 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
94906878 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
94906918 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
94906939 AAACTTGGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 117 0.90
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:94909952 original size:40 final size:40
Alignment explanation
Indices: 94909907--94910036 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
94909897 CGGAATACAA
94909907 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
94909947 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
94909987 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
94910027 CCGGATATAA
1 CCGGATATAA
94910037 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:94910051 original size:40 final size:40
Alignment explanation
Indices: 94909907--94910069 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
94909897 CGGAATACAA
* **
94909907 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
94909947 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
94909987 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
94910027 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
94910066 CCGG
1 CCGG
94910070 TATCATTCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:94918006 original size:40 final size:40
Alignment explanation
Indices: 94917961--94918090 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
94917951 CGGAATACAA
94917961 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
94918001 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
94918041 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
94918081 CCGGATATAA
1 CCGGATATAA
94918091 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:94918105 original size:40 final size:40
Alignment explanation
Indices: 94917961--94918123 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
94917951 CGGAATACAA
* **
94917961 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
94918001 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
94918041 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
94918081 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
94918120 CCGG
1 CCGG
94918124 GTATCATTCA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:94932345 original size:48 final size:48
Alignment explanation
Indices: 94932260--94932351 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
94932250 TAAGGTTATG
* * * *
94932260 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTAGAACATAGCATTGGCATCGATA
*
94932308 TGTGATCCCATGTAAGACCATATCTAGAATATAGCATTGGCATC
1 TGTGATCCCATGTAAGACCATATCTAGAACATAGCATTGGCATC
94932352 TTACTATGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATCTAGAACATAGCATTGGCATCGATA
Found at i:94937652 original size:21 final size:21
Alignment explanation
Indices: 94937634--94937701 Score: 93
Period size: 21 Copynumber: 3.2 Consensus size: 21
94937624 TTTTGAAACA
94937634 ATTTTAAAATCAAGTGAAAAT
1 ATTTTAAAATCAAGTGAAAAT
* * *
94937655 ATTTT-TAACCAAGTCAAAATT
1 ATTTTAAAATCAAGTGAAAA-T
94937676 ATTTTAAAATCAAGTGAAAAT
1 ATTTTAAAATCAAGTGAAAAT
94937697 ATTTT
1 ATTTT
94937702 TAACCAAGTC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
20 11 0.28
21 17 0.44
22 11 0.28
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.38
Consensus pattern (21 bp):
ATTTTAAAATCAAGTGAAAAT
Found at i:94937673 original size:20 final size:20
Alignment explanation
Indices: 94937644--94937716 Score: 92
Period size: 20 Copynumber: 3.5 Consensus size: 20
94937634 ATTTTAAAAT
*
94937644 CAAGTGAAAATATTTTTAAC
1 CAAGTCAAAATATTTTTAAC
* *
94937664 CAAGTCAAAATTATTTTAAAAT
1 CAAGTCAAAA-TATTTT-TAAC
*
94937686 CAAGTGAAAATATTTTTAAC
1 CAAGTCAAAATATTTTTAAC
94937706 CAAGTCAAAAT
1 CAAGTCAAAAT
94937717 TATCTCAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 21 0.48
21 12 0.27
22 11 0.25
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.33
Consensus pattern (20 bp):
CAAGTCAAAATATTTTTAAC
Found at i:94937693 original size:42 final size:42
Alignment explanation
Indices: 94937634--94937719 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
94937624 TTTTGAAACA
94937634 ATTTTAAAATCAAGTGAAAATATTTTTAACCAAGTCAAAATT
1 ATTTTAAAATCAAGTGAAAATATTTTTAACCAAGTCAAAATT
94937676 ATTTTAAAATCAAGTGAAAATATTTTTAACCAAGTCAAAATT
1 ATTTTAAAATCAAGTGAAAATATTTTTAACCAAGTCAAAATT
94937718 AT
1 AT
94937720 CTCAATTAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (42 bp):
ATTTTAAAATCAAGTGAAAATATTTTTAACCAAGTCAAAATT
Found at i:94943191 original size:81 final size:81
Alignment explanation
Indices: 94943095--94943459 Score: 294
Period size: 81 Copynumber: 4.5 Consensus size: 81
94943085 CCTCAACCTA
* * * *
94943095 TAAAATTACCGAAATACCCTTGACTTATAAAATTACCGAAATA-CCCTCGATTTCTAAAATTAAC
1 TAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATATCCCTCGATTTCTAAAATTATC
*
94943159 AAAATACCTCTGGTTTG
66 AAAATACC-CTGATTTG
* * * ** *
94943176 TAAAATTACCAAAATACCCTTGATTTGTGAAATTACCAAAATA-CCTTCGACCTGTAAAATTATC
1 TAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATATCCCTCGATTTCTAAAATTATC
* *
94943240 GAAATACCCTCGACTTG
66 AAAATACCCT-GATTTG
* * * * * ** *
94943257 TAAAATTACTAAAATACCCTTAATTTGTAAAATTACCAAAACATCCCT-AATTTAAAAAATTACC
1 TAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATATCCCTCGATTTCTAAAATTATC
*
94943321 CAAATACCCTGATTTG
66 AAAATACCCTGATTTG
* * * * *
94943337 AAAAATTA-CAGAAATACCCCTGATTTACAAAATTA-CAGAAATATACCTTGACTTTC-AAAATT
1 TAAAATTACCA-AAATACCCTTGATTTATAAAATTACCA-AAATATCCCTCGA-TTTCTAAAATT
* * *
94943399 TTCAAAAATACCATTGGTTTG
63 ATC-AAAATACC-CTGATTTG
* * * * * *
94943420 CAAAATTACCGAAATA-CCTTGGTTTGTAGATTTACCAAAA
1 TAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAA
94943460 CACCCTTATA
Statistics
Matches: 225, Mismatches: 49, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
79 3 0.01
80 42 0.19
81 131 0.58
82 28 0.12
83 20 0.09
84 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATATCCCTCGATTTCTAAAATTATC
AAAATACCCTGATTTG
Found at i:94943340 original size:27 final size:26
Alignment explanation
Indices: 94943095--94943465 Score: 251
Period size: 27 Copynumber: 13.8 Consensus size: 26
94943085 CCTCAACCTA
* * *
94943095 TAAAATTACCGAAATACCCTTGACTTA
1 TAAAATTACCAAAATACCC-TGATTTG
* *
94943122 TAAAATTACCGAAATACCCTCGATTTC
1 TAAAATTACCAAAATACCCT-GATTTG
* *
94943149 TAAAATTAACAAAATACCTCTGGTTTG
1 TAAAATTACCAAAATACC-CTGATTTG
94943176 TAAAATTACCAAAATACCCTTGATTTG
1 TAAAATTACCAAAATACCC-TGATTTG
* * **
94943203 TGAAATTACCAAAATACCTTCGACCTG
1 TAAAATTACCAAAATACCCT-GATTTG
* * *
94943230 TAAAATTATCGAAATACCCTCGACTTG
1 TAAAATTACCAAAATACCCT-GATTTG
* *
94943257 TAAAATTACTAAAATACCCTTAATTTG
1 TAAAATTACCAAAATACCC-TGATTTG
* * *
94943284 TAAAATTACCAAAACATCCCTAATTTA
1 TAAAATTACCAAAATA-CCCTGATTTG
* *
94943311 AAAAATTACCCAAATACCCTGATTTG
1 TAAAATTACCAAAATACCCTGATTTG
* *
94943337 AAAAATTA-CAGAAATACCCCTGATTTA
1 TAAAATTACCA-AAATA-CCCTGATTTG
* * *
94943364 CAAAATTACAGAAATATACCTTGACTTT-
1 TAAAATTAC-CAAA-ATACCCTGA-TTTG
* * * * *
94943392 CAAAATTTTCAAAAATACCATTGGTTTG
1 TAAAA-TTACCAAAATACC-CTGATTTG
* * * *
94943420 CAAAATTACCGAAATACCTTGGTTTG
1 TAAAATTACCAAAATACCCTGATTTG
* * *
94943446 TAGATTTACCAAAACACCCT
1 TAAAATTACCAAAATACCCT
94943466 TATAGGGTGA
Statistics
Matches: 282, Mismatches: 47, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
25 1 0.00
26 46 0.16
27 196 0.70
28 29 0.10
29 10 0.04
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (26 bp):
TAAAATTACCAAAATACCCTGATTTG
Found at i:94944220 original size:22 final size:22
Alignment explanation
Indices: 94944195--94944261 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
94944185 GTTGCTGCGA
94944195 TGTTTACAGCTATGTGTTGTCC
1 TGTTTACAGCTATGTGTTGTCC
*
94944217 TGTTTACAACTATGTGTTGTCC
1 TGTTTACAGCTATGTGTTGTCC
*
94944239 TGTTTATAGCTATGTGTTGTCC
1 TGTTTACAGCTATGTGTTGTCC
94944261 T
1 T
94944262 ATCTATGGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.15, C:0.16, G:0.21, T:0.48
Consensus pattern (22 bp):
TGTTTACAGCTATGTGTTGTCC
Found at i:94947050 original size:26 final size:27
Alignment explanation
Indices: 94946925--94947189 Score: 128
Period size: 27 Copynumber: 9.9 Consensus size: 27
94946915 TAGTATTACT
* * *
94946925 GAAATGCCCTCGACCTGTAGAATTA-C
1 GAAATACCCTCGACTTGTAAAATTATC
* * *
94946951 TGAAATACTCTCGACTTATAAAATTACC
1 -GAAATACCCTCGACTTGTAAAATTATC
* * ** * * * *
94946979 AAAATACCATTAATTTGTGAACTTACC
1 GAAATACCCTCGACTTGTAAAATTATC
* *
94947006 GAAATATCCTCGACCTGTAAAATTATC
1 GAAATACCCTCGACTTGTAAAATTATC
*
94947033 TAAA-ACCCTCGACTTGTAAAATTATC
1 GAAATACCCTCGACTTGTAAAATTATC
* * * *
94947059 GAAATATCCTCGATTTTTAAAATTACC
1 GAAATACCCTCGACTTGTAAAATTATC
* * * * *
94947086 AAAATA-CCTCTAAGTTGGAAAATTACC
1 GAAATACCCTC-GACTTGTAAAATTATC
* * *
94947113 CAAATACCCT-GATTTGGAAAATTA-C
1 GAAATACCCTCGACTTGTAAAATTATC
* * ** *
94947138 AGAAATACCCTTGATTTACAAAATTATA
1 -GAAATACCCTCGACTTGTAAAATTATC
* *
94947166 GAAACACCCTTGACTT-TCAAAATT
1 GAAATACCCTCGACTTGT-AAAATT
94947190 TTCAAAAATA
Statistics
Matches: 183, Mismatches: 47, Indels: 16
0.74 0.19 0.07
Matches are distributed among these distances:
25 1 0.01
26 48 0.26
27 130 0.71
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
GAAATACCCTCGACTTGTAAAATTATC
Found at i:94947079 original size:27 final size:27
Alignment explanation
Indices: 94947005--94947083 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 27
94946995 GTGAACTTAC
*
94947005 CGAAATATCCTCGACCTGTAAAATTAT
1 CGAAATATCCTCGACTTGTAAAATTAT
* *
94947032 CTAAA-ACCCTCGACTTGTAAAATTAT
1 CGAAATATCCTCGACTTGTAAAATTAT
* *
94947058 CGAAATATCCTCGATTTTTAAAATTA
1 CGAAATATCCTCGACTTGTAAAATTA
94947084 CCAAAATACC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
CGAAATATCCTCGACTTGTAAAATTAT
Found at i:94947148 original size:107 final size:107
Alignment explanation
Indices: 94946919--94947148 Score: 238
Period size: 107 Copynumber: 2.1 Consensus size: 107
94946909 GTAGGCTAGT
* *
94946919 ATTACTGAAATGCCCTCGACCTGTAGAATTACTGAAATACTCTCGACTTATAAAATTACCAAAAT
1 ATTAC-GAAATACCCTCGACCTGTAAAATTACTGAAATACTCTCGACTTATAAAATTACCAAAAT
* * * * *
94946984 ACCATTAATTTGTGAACTTACCGAAATATCCTCGACCTGTAAA
65 ACCATTAAGTTGTGAAATTACCCAAATACCCTCGACCTGGAAA
* * * *
94947027 ATTATCTAAA-ACCCTCGACTTGTAAAATTA-TCGAAATA-TCCTCGATTTTTAAAATTACCAAA
1 ATTA-CGAAATACCCTCGACCTGTAAAATTACT-GAAATACT-CTCGACTTATAAAATTACCAAA
**
94947089 ATACC-TCTAAGTTG-GAAAATTACCCAAATACCCT-GATTTGGAAA
63 ATACCAT-TAAGTTGTG-AAATTACCCAAATACCCTCGACCTGGAAA
94947133 ATTACAGAAATACCCT
1 ATTAC-GAAATACCCT
94947149 TGATTTACAA
Statistics
Matches: 101, Mismatches: 14, Indels: 15
0.78 0.11 0.12
Matches are distributed among these distances:
105 1 0.01
106 18 0.18
107 74 0.73
108 7 0.07
109 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (107 bp):
ATTACGAAATACCCTCGACCTGTAAAATTACTGAAATACTCTCGACTTATAAAATTACCAAAATA
CCATTAAGTTGTGAAATTACCCAAATACCCTCGACCTGGAAA
Found at i:94947160 original size:27 final size:27
Alignment explanation
Indices: 94947104--94947237 Score: 101
Period size: 27 Copynumber: 5.0 Consensus size: 27
94947094 TCTAAGTTGG
** **
94947104 AAAATTACCCAAATACCC-TGATTTGG
1 AAAATTACAGAAATACCCTTGATTTAC
94947130 AAAATTACAGAAATACCCTTGATTTAC
1 AAAATTACAGAAATACCCTTGATTTAC
* *
94947157 AAAATTATAGAAACACCCTTGACTTT-C
1 AAAATTACAGAAATACCCTTGA-TTTAC
* * * * *
94947184 AAAATTTTCAAAAATACCATTGGTTTGC
1 AAAA-TTACAGAAATACCCTTGATTTAC
** * *
94947212 AAAATTATTGAAATACACTTGGTTTA
1 AAAATTACAGAAATACCCTTGATTTA
94947238 TAGATTTACC
Statistics
Matches: 85, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
26 16 0.19
27 49 0.58
28 20 0.24
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGATTTAC
Found at i:94947542 original size:41 final size:41
Alignment explanation
Indices: 94947497--94947613 Score: 207
Period size: 41 Copynumber: 2.9 Consensus size: 41
94947487 GGAGGAAGAA
94947497 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
*
94947538 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* *
94947579 ATTAAGGATCGCATGGTTGCTTGACGACTGTGGAT
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGAT
94947614 TGACAGGTGG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Done.