Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 304 of 433
Found at i:94947811 original size:22 final size:22
Alignment explanation
Indices: 94947759--94947823 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
94947749 GACAATTATT
* **
94947759 CTGATTATGGCTTTACGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
94947781 CT-ACGTATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
94947803 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
94947824 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:94948055 original size:22 final size:22
Alignment explanation
Indices: 94948030--94948073 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
94948020 GTTGCGATGC
*
94948030 TTACAGCTATGTGCTATCCTGT
1 TTACAGCTATGTACTATCCTGT
* *
94948052 TTACGGCTATGTACTGTCCTGT
1 TTACAGCTATGTACTATCCTGT
94948074 CTATGGCGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.41
Consensus pattern (22 bp):
TTACAGCTATGTACTATCCTGT
Found at i:94960321 original size:26 final size:27
Alignment explanation
Indices: 94960292--94960347 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
94960282 TATCCATATC
94960292 TACTTCATCA-CATAACCAGTTACC-AA
1 TACTTCAT-ATCATAACCAGTTACCTAA
* *
94960318 TACTTCATATCATAGCCATTTACCTAA
1 TACTTCATATCATAACCAGTTACCTAA
94960345 TAC
1 TAC
94960348 ATCCCACTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 1 0.04
26 20 0.77
27 5 0.19
ACGTcount: A:0.36, C:0.29, G:0.04, T:0.32
Consensus pattern (27 bp):
TACTTCATATCATAACCAGTTACCTAA
Found at i:94971493 original size:40 final size:39
Alignment explanation
Indices: 94971449--94971602 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
94971439 GTTCAAAACA
* * ** * *
94971449 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
94971489 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
94971529 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
94971568 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
94971603 TTCATTCACA
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:94971560 original size:39 final size:39
Alignment explanation
Indices: 94971479--94971602 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
94971469 TATGGTAACC
* *
94971479 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
94971519 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
94971558 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
94971597 CGCACA
1 CGCACA
94971603 TTCATTCACA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 60 0.78
40 17 0.22
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:94974087 original size:11 final size:11
Alignment explanation
Indices: 94974071--94974095 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
94974061 TTATATATAC
94974071 TAATAAAATAA
1 TAATAAAATAA
94974082 TAATAAAATAA
1 TAATAAAATAA
94974093 TAA
1 TAA
94974096 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:94976035 original size:25 final size:25
Alignment explanation
Indices: 94975995--94976045 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
94975985 TCTATGGAAG
* *
94975995 AAAATGATTCATGGTTGTAAAATAA
1 AAAATGAGTCACGGTTGTAAAATAA
94976020 AAAATGAGTCACGGTTGTAAAATAA
1 AAAATGAGTCACGGTTGTAAAATAA
94976045 A
1 A
94976046 CAACTTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.27
Consensus pattern (25 bp):
AAAATGAGTCACGGTTGTAAAATAA
Found at i:94976849 original size:50 final size:50
Alignment explanation
Indices: 94976775--94976965 Score: 278
Period size: 50 Copynumber: 3.8 Consensus size: 50
94976765 TGCTAGGGAT
* *
94976775 ATATAAGAGCTAGAGTAAGACCATGTCTAGGACATGGCATCGAG-CTCGAG
1 ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCG-GCCTCGAG
* *
94976825 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGAATCGGCCTCGAG
1 ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAG
*
94976875 ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAG
* * *
94976925 ATACGAGAG-TCAGTGTAAGACCATGCCTGGGACATGGCATC
1 ATATGAGAGCT-AGTGTAAGACCATGTCTAGGACATGGCATC
94976966 AACTTTGAGG
Statistics
Matches: 129, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
49 2 0.02
50 127 0.98
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.21
Consensus pattern (50 bp):
ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAG
Found at i:95000438 original size:23 final size:22
Alignment explanation
Indices: 95000397--95000443 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
95000387 AAAGGTATAA
95000397 TTTTAATTTTTAATATTTATATT
1 TTTTAATTTTTAATATTTAT-TT
* * *
95000420 TTTTTATTTTTACTCTTTATTT
1 TTTTAATTTTTAATATTTATTT
95000442 TT
1 TT
95000444 AAGTTAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTAATTTTTAATATTTATTT
Found at i:95000766 original size:15 final size:15
Alignment explanation
Indices: 95000748--95000788 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
95000738 AATCAAATTT
95000748 AAATAATAAA-AATAA
1 AAAT-ATAAATAATAA
95000763 AAAT-TAAATTAATAA
1 AAATATAAA-TAATAA
95000778 AAATATAAATA
1 AAATATAAATA
95000789 TTAACTACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.17
15 15 0.65
16 4 0.17
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATATAAATAATAA
Found at i:95000775 original size:21 final size:22
Alignment explanation
Indices: 95000742--95000792 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
95000732 ACTAATAATC
95000742 AAAT-TTAAATAATAAAAATA-
1 AAATATTAAATAATAAAAATAT
95000762 AAA-ATTAAATTAATAAAAATAT
1 AAATATTAAA-TAATAAAAATAT
95000784 AAATATTAA
1 AAATATTAA
95000793 CTACTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 8 0.30
21 11 0.41
22 3 0.11
23 5 0.19
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAATATTAAATAATAAAAATAT
Found at i:95003488 original size:46 final size:45
Alignment explanation
Indices: 95003391--95003497 Score: 130
Period size: 46 Copynumber: 2.3 Consensus size: 45
95003381 ATATGTGTAC
*
95003391 TAGTGTAAGACATGCCTGGGACATGCATCGGCCACATTATGAGAAT
1 TAGTGTAAGACATGTCTGGGACATGCATCGG-CACATTATGAGAAT
*
95003437 CAGTGTAAGACATGTCTGGGACATGCATC-G-ACATTGA-GACGAGAGT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCACATT-ATGA-GA-A-T
95003483 TAGTGTAAGACATGT
1 TAGTGTAAGACATGT
95003498 GTTGTAACGC
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
43 7 0.13
44 3 0.06
45 2 0.04
46 42 0.78
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCACATTATGAGAAT
Found at i:95004582 original size:19 final size:20
Alignment explanation
Indices: 95004558--95004595 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
95004548 GGTACCACCA
95004558 AAACATACA-TCA-CATCTTT
1 AAACAT-CATTCATCATCTTT
95004577 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
95004596 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 2 0.12
19 9 0.53
20 6 0.35
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.34
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:95004984 original size:93 final size:93
Alignment explanation
Indices: 95004825--95004995 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
95004815 GCCCCTAAGT
* * *
95004825 GAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
95004890 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
95004918 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
95004983 CGAGTTCGGATGC
66 CGAGTTCGGATGC
95004996 TCAAGCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95004992 original size:46 final size:46
Alignment explanation
Indices: 95004820--95004992 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
95004810 AACCCGCCCC
* * * * *
95004820 TAAGTGAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
95004866 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
95004914 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
95004959 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
95004993 TGCTCAAGCA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:95005448 original size:30 final size:30
Alignment explanation
Indices: 95005414--95005473 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
95005404 ATTTAATACG
95005414 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
95005444 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
95005474 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:95008780 original size:46 final size:46
Alignment explanation
Indices: 95008729--95008910 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
95008719 AGTTAAATAT
95008729 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
95008775 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
95008821 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
95008867 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
95008911 AGATGTATAT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:95008968 original size:47 final size:47
Alignment explanation
Indices: 95008914--95009024 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
95008904 ATGTATGAGA
* * *
95008914 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
95008961 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
95009008 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
95009025 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:95011638 original size:40 final size:40
Alignment explanation
Indices: 95011583--95011884 Score: 482
Period size: 40 Copynumber: 7.6 Consensus size: 40
95011573 CTCGACGATG
*
95011583 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
95011623 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTG--AT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
95011661 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
95011701 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* **
95011741 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGACGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
95011781 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
95011821 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
95011861 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTTCCGAAGAGCA
95011885 ATCATGCTGG
Statistics
Matches: 248, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
38 36 0.15
40 212 0.85
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:95011844 original size:120 final size:120
Alignment explanation
Indices: 95011579--95011900 Score: 542
Period size: 120 Copynumber: 2.7 Consensus size: 120
95011569 AGGTCTCGAC
*
95011579 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAG
*
95011643 AGCATTCATGCTAGTGA--TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
66 AGCATTCATGCTAGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
* *
95011696 GATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAG
95011761 AGCATTCATGCTAGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
66 AGCATTCATGCTAGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
* * *
95011816 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCGAAG
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAG
* *
95011881 AGCAATCATGCTGGTGACGT
66 AGCATTCATGCTAGTGACGT
95011901 GTATTCGGGC
Statistics
Matches: 191, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
117 3 0.02
118 75 0.39
120 113 0.59
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (120 bp):
GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAG
AGCATTCATGCTAGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
Found at i:95012638 original size:38 final size:39
Alignment explanation
Indices: 95012544--95012646 Score: 104
Period size: 38 Copynumber: 2.6 Consensus size: 39
95012534 TTCGAATGGT
* ** * *
95012544 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGT-CGAATCACTAA
95012584 ATCCGGGCTAAT-TCCCGAAGGCAATTGT-GAATCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTCGAATCACTA-A
*
95012623 A-CCGGGCTATGTCCCGAAGACAAT
1 ATCCGGGCTATGTCCCGAAGGCAAT
95012647 CGAGCGAGTC
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
37 2 0.04
38 26 0.48
39 2 0.04
40 23 0.43
41 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTCGAATCACTAA
Found at i:95015401 original size:46 final size:46
Alignment explanation
Indices: 95015350--95015531 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
95015340 AGTTAAATAT
95015350 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
95015396 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
95015442 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
95015488 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
95015532 AGATGTATAT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:95015589 original size:47 final size:47
Alignment explanation
Indices: 95015535--95015645 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
95015525 ATGTATGAGA
* * *
95015535 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
95015582 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
95015629 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
95015646 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:95020303 original size:40 final size:40
Alignment explanation
Indices: 95020259--95020368 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
95020249 TTCACAATTT
* * *
95020259 GCACAAATGCCTTCAGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
95020299 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
95020339 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
95020369 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:95025930 original size:93 final size:92
Alignment explanation
Indices: 95025772--95025941 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
95025762 GCCCCTAAGT
*
95025772 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
95025837 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* * *
95025864 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCAA
95025929 CGAGTTCGGATGC
65 CGAGTTCGGATGC
95025942 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 27 0.37
93 46 0.63
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95025931 original size:46 final size:46
Alignment explanation
Indices: 95025767--95025938 Score: 208
Period size: 45 Copynumber: 3.7 Consensus size: 46
95025757 AACCCGCCCC
* * *
95025767 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
95025812 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
95025860 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
95025905 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
95025939 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 33 0.31
46 29 0.27
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:95033490 original size:40 final size:39
Alignment explanation
Indices: 95033325--95033508 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
95033315 AAATTGAATG
* * *
95033325 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
95033365 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
95033405 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
95033445 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
95033484 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
95033509 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:95033533 original size:80 final size:81
Alignment explanation
Indices: 95033365--95033553 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
95033355 GCTGGAAATT
* * * *
95033365 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
95033430 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
95033446 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
95033509 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
95033525 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
95033554 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:95041644 original size:40 final size:40
Alignment explanation
Indices: 95041516--95041646 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
95041506 TATGCTGGAA
* * * *
95041516 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
95041556 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
95041596 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
95041636 ATTATATCCGG
1 ATTATATCCGG
95041647 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:95044242 original size:29 final size:29
Alignment explanation
Indices: 95044205--95044307 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 29
95044195 GGTTGAAGAA
95044205 CTCGCACACACAGTGCCTCAATTACCGAT
1 CTCGCACACACAGTGCCTCAATTACCGAT
* ** **
95044234 CTCGCACACATAGTG-CTCGGTTAAAGGAAT
1 CTCGCACACACAGTGCCTCAATT-ACCG-AT
*
95044264 -TTGCACACACAGTGCCTCAATTACCGAT
1 CTCGCACACACAGTGCCTCAATTACCGAT
*
95044292 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
95044308 TCGGTTAAAG
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
28 7 0.12
29 43 0.75
30 7 0.12
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.22
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAATTACCGAT
Found at i:95044292 original size:58 final size:58
Alignment explanation
Indices: 95044171--95044334 Score: 276
Period size: 58 Copynumber: 2.8 Consensus size: 58
95044161 GTGCCCACTG
* * * *
95044171 ACCGATCTTGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTCAATT
95044228 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTCAATT
*
95044286 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCATACACAGT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGT
95044335 ACCTTTAATC
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 29 0.29
58 72 0.71
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTCAATT
Found at i:95044554 original size:43 final size:43
Alignment explanation
Indices: 95044505--95044609 Score: 183
Period size: 43 Copynumber: 2.4 Consensus size: 43
95044495 CACTAGCATT
95044505 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACG
* * *
95044548 AAGCCTGCTATGCACAAAGGCCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACG
95044591 AAGCCTGCTAGGCACGAAG
1 AAGCCTGCTAGGCACGAAG
95044610 CCTGCTAGGC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.10
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACG
Found at i:95044606 original size:16 final size:16
Alignment explanation
Indices: 95044585--95044625 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
95044575 ACACATCACC
95044585 GGCACGAAGCCTGCTA
1 GGCACGAAGCCTGCTA
95044601 GGCACGAAGCCTGCTA
1 GGCACGAAGCCTGCTA
95044617 GGCACGAAG
1 GGCACGAAG
95044626 GCCCGAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.34, T:0.10
Consensus pattern (16 bp):
GGCACGAAGCCTGCTA
Found at i:95044634 original size:59 final size:59
Alignment explanation
Indices: 95044542--95044668 Score: 218
Period size: 59 Copynumber: 2.2 Consensus size: 59
95044532 ACACATCACC
*
95044542 GGCACGAAGCCTGCTATGCACAAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
1 GGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
* * *
95044601 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCTGCACGAAGCCTGCTA
1 GGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
95044660 GGCACGAAG
1 GGCACGAAG
95044669 GCCCGAATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 64 1.00
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (59 bp):
GGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
Found at i:95044683 original size:102 final size:102
Alignment explanation
Indices: 95044505--95044711 Score: 351
Period size: 102 Copynumber: 2.0 Consensus size: 102
95044495 CACTAGCATT
*
95044505 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTATGCACAAAGGCC
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCC
*
95044570 CGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
66 CGAATACACATCACAGGCACGAAGCCTGCTAGGCACG
* * * *
95044607 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCTGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCC
*
95044672 CGAATATACATCACAGGCACGAAGCCTGCTAGGCACG
66 CGAATACACATCACAGGCACGAAGCCTGCTAGGCACG
95044709 AAG
1 AAG
95044712 GCCCGAATAC
Statistics
Matches: 98, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 98 1.00
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.12
Consensus pattern (102 bp):
AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCC
CGAATACACATCACAGGCACGAAGCCTGCTAGGCACG
Found at i:95044858 original size:43 final size:43
Alignment explanation
Indices: 95044601--95044859 Score: 428
Period size: 43 Copynumber: 6.0 Consensus size: 43
95044591 AAGCCTGCTA
*
95044601 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCATC
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
* * *
95044644 TGCACGAAGCCTGCTAGGCACGAAGGCCCGAATATACATCACA
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
*
95044687 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACT
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
95044730 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
* *
95044773 AGTACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
* * *
95044816 GGCACGAAGCTTGCTAGGCACAAAGGCCCGAATAGACATCACC
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
95044859 G
1 G
95044860 AGTTTCATGC
Statistics
Matches: 201, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 201 1.00
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
Found at i:95046833 original size:46 final size:46
Alignment explanation
Indices: 95046766--95046937 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
95046756 TGTAACCCGC
*
95046766 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
95046812 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
95046862 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
95046905 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
95046938 GGATGCTCAA
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:95046886 original size:93 final size:92
Alignment explanation
Indices: 95046774--95046943 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
95046764 GCCCATAAGT
* *
95046774 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
95046839 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTT-GGATGCCTAGTTACATCTCAC
* *
95046867 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
95046932 CGAGTTGGATGC
66 CGAGTTGGATGC
95046944 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 6 0.08
93 67 0.92
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTGGATGCCTAGTTACATCTCAC
Found at i:95054054 original size:19 final size:20
Alignment explanation
Indices: 95054021--95054058 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
95054011 TGTCAAGCTT
*
95054021 TCGAGTTTTTGATCAAACAC
1 TCGAGTTTTTCATCAAACAC
95054041 TCGA-TTTTTCATCAAACA
1 TCGAGTTTTTCATCAAACA
95054059 AGGTAACGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (20 bp):
TCGAGTTTTTCATCAAACAC
Found at i:95055425 original size:39 final size:39
Alignment explanation
Indices: 95055382--95055480 Score: 144
Period size: 39 Copynumber: 2.5 Consensus size: 39
95055372 AACATGTTTT
* *
95055382 TGAGTATTGCGATATATGCTTGAACGTTATGTGATTATA
1 TGAGTATTGCGATATATGCTTGAACATTATGTAATTATA
*
95055421 TGAGTATTGCGATATGTGCTTGAACATTATGTAATTATA
1 TGAGTATTGCGATATATGCTTGAACATTATGTAATTATA
* * *
95055460 TGTGTAATGTGATATATGCTT
1 TGAGTATTGCGATATATGCTT
95055481 AAAAGTGAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.42
Consensus pattern (39 bp):
TGAGTATTGCGATATATGCTTGAACATTATGTAATTATA
Found at i:95060021 original size:43 final size:43
Alignment explanation
Indices: 95059866--95060038 Score: 149
Period size: 43 Copynumber: 4.1 Consensus size: 43
95059856 ATACTCGAAA
* * *
95059866 ACACATATATCACATA-CAATGCC-ATATCCCAGATATGGTCTT
1 ACACATA-ATCACATATCAATGCCAATGTCCCAAACATGGTCTT
** * * ** *
95059908 ACAGGTTATCACATATCGATGCCTCTGTCCCAAACAGGGT-TT
1 ACACATAATCACATATCAATGCCAATGTCCCAAACATGGTCTT
* * * * *
95059950 -TACATGAATCATATA-CGATGCCAATGTCCCAGATATGGTCTT
1 ACACAT-AATCACATATCAATGCCAATGTCCCAAACATGGTCTT
*
95059992 ACACATAATCTCATATCAATGCCAATGTCCCAAACATGGTCTT
1 ACACATAATCACATATCAATGCCAATGTCCCAAACATGGTCTT
95060035 ACAC
1 ACAC
95060039 GAAATCATAC
Statistics
Matches: 100, Mismatches: 25, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
41 29 0.29
42 28 0.28
43 43 0.43
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (43 bp):
ACACATAATCACATATCAATGCCAATGTCCCAAACATGGTCTT
Found at i:95060037 original size:84 final size:84
Alignment explanation
Indices: 95059874--95060047 Score: 215
Period size: 84 Copynumber: 2.1 Consensus size: 84
95059864 AAACACATAT
* ** * * **
95059874 ATCACATACAATGCCATATCCCAGATATGGTCTTACAGGTTATCACATATCGATGCCTCTGTCCC
1 ATCATATACAATGCCATATCCCAGATATGGTCTTACACATAATCACATATCAATGCCAATGTCCC
* *
95059939 AAACAGGGTTTTACATG-A
66 AAACAGGGTCTTACACGAA
* * *
95059957 ATCATATACGATGCCAATGTCCCAGATATGGTCTTACACATAATCTCATATCAATGCCAATGTCC
1 ATCATATACAATGCC-ATATCCCAGATATGGTCTTACACATAATCACATATCAATGCCAATGTCC
*
95060022 CAAACATGGTCTTACACGAA
65 CAAACAGGGTCTTACACGAA
95060042 ATCATA
1 ATCATA
95060048 CCTTGGAAGT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
83 13 0.17
84 56 0.74
85 7 0.09
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (84 bp):
ATCATATACAATGCCATATCCCAGATATGGTCTTACACATAATCACATATCAATGCCAATGTCCC
AAACAGGGTCTTACACGAA
Found at i:95065786 original size:27 final size:27
Alignment explanation
Indices: 95065718--95065788 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
95065708 CGACTTGTAA
* *
95065718 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
95065745 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
95065772 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
95065789 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:95065795 original size:27 final size:27
Alignment explanation
Indices: 95065772--95065895 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
95065762 CAATTTACAG
95065772 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
95065799 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
95065826 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
95065853 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
95065880 AATTACTAAAATACCC
1 AATTACCAAAATACCC
95065896 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:95065814 original size:54 final size:53
Alignment explanation
Indices: 95065756--95065895 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
95065746 ATTACCGTTT
95065756 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
95065810 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
95065864 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
95065896 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:95065907 original size:81 final size:81
Alignment explanation
Indices: 95065772--95065923 Score: 218
Period size: 81 Copynumber: 1.9 Consensus size: 81
95065762 CAATTTACAG
* **
95065772 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
95065837 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
95065853 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
95065916 AATACCCT
64 AATACCCT
95065924 GTAGGGTAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 60 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:95065908 original size:54 final size:54
Alignment explanation
Indices: 95065772--95065922 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
95065762 CAATTTACAG
* ** * * *
95065772 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
95065826 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
95065880 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
95065923 TGTAGGGTAA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:95065930 original size:26 final size:27
Alignment explanation
Indices: 95065878--95065938 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 27
95065868 CATGGTTTGA
95065878 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
*
95065905 AAAATTACTGAAATA-CCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
95065931 AAAATTAC
1 AAAATTAC
95065939 CATTTTGCCC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 19 0.58
27 14 0.42
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:95066592 original size:28 final size:28
Alignment explanation
Indices: 95066559--95066655 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
95066549 GCGTAGATCA
95066559 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
95066587 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
95066615 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
95066643 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
95066656 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:95068550 original size:46 final size:46
Alignment explanation
Indices: 95068449--95068536 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
95068439 TGTAACCCGC
* * *
95068449 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
95068495 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
95068537 AACCATCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:95071240 original size:48 final size:48
Alignment explanation
Indices: 95071154--95071269 Score: 144
Period size: 48 Copynumber: 2.4 Consensus size: 48
95071144 ACCATCCCAG
* *
95071154 ACATGGTCTTACACTAGCTCTCATAACAATGCCAATGCCATGTTCC-AA
1 ACATGGTCTTACACTAGCTCACATAACAAGGCCAATGCCATG-TCCTAA
* *** * *
95071202 ACATGGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCTAG
1 ACATGGTCTTACACTAGCTCACATAACAAGGCCAATGCCATGTCCTAA
95071250 ACATGGTCTTACACTAGCTC
1 ACATGGTCTTACACTAGCTC
95071270 TCAAATAACC
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
47 3 0.05
48 55 0.95
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCACATAACAAGGCCAATGCCATGTCCTAA
Found at i:95074015 original size:55 final size:53
Alignment explanation
Indices: 95073946--95074088 Score: 189
Period size: 55 Copynumber: 2.7 Consensus size: 53
95073936 ATTGATGGTT
*
95073946 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGAT-C-ATAAGGC
* ** * *
95074001 AAAGG-TACCATGTAAGGCCATACCAAGGCATGGCATTGGTGAGATCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGATCATAAGGC
*
95074054 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
95074089 ATGGTAAGTT
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
52 4 0.05
53 32 0.43
54 1 0.01
55 34 0.45
56 4 0.05
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGATCATAAGGC
Found at i:95074086 original size:53 final size:56
Alignment explanation
Indices: 95073946--95074093 Score: 196
Period size: 53 Copynumber: 2.7 Consensus size: 56
95073936 ATTGATGGTT
* *
95073946 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGATACTATAAGGCA
* ** *
95074002 AAGG-TACCATGTAAGGCCATACCAAGGCATGGCATTGGTGAGAT-C-ATAAGGC-
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGATACTATAAGGCA
* *
95074054 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGT
95074094 AAGTTCAAAA
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
52 4 0.05
53 36 0.46
54 1 0.01
55 34 0.43
56 4 0.05
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGATACTATAAGGCA
Found at i:95075215 original size:43 final size:43
Alignment explanation
Indices: 95075167--95075293 Score: 175
Period size: 43 Copynumber: 3.0 Consensus size: 43
95075157 TGTATAGGGA
*
95075167 GAAATCATATAACGATGTCAATGTCCCAGACATGGTCTTACAC
1 GAAATCATATAACGATGCCAATGTCCCAGACATGGTCTTACAC
* **
95075210 GAAATCATATAATGATGCCAATGTCCCAGAGTTGGTCTTACAC
1 GAAATCATATAACGATGCCAATGTCCCAGACATGGTCTTACAC
* * *
95075253 GTAATCACTAT-ACAATGCCAATTTCCCAGACATGGTCTTAC
1 GAAATCA-TATAACGATGCCAATGTCCCAGACATGGTCTTAC
95075294 TTGTAATCTC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 70 0.96
44 3 0.04
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
GAAATCATATAACGATGCCAATGTCCCAGACATGGTCTTACAC
Found at i:95081050 original size:17 final size:19
Alignment explanation
Indices: 95081008--95081051 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
95080998 ATGAAATTTT
*
95081008 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
95081027 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
95081045 AA-TATTA
1 AATTATTA
95081052 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:95084400 original size:19 final size:18
Alignment explanation
Indices: 95084363--95084406 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
95084353 ATACATACAG
95084363 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
95084380 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
95084399 TACTAATT
1 TAATAATT
95084407 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:95085996 original size:26 final size:26
Alignment explanation
Indices: 95085966--95086116 Score: 92
Period size: 27 Copynumber: 5.7 Consensus size: 26
95085956 TTAGAATACT
*
95085966 TTAGTTTACCAATTACCAAAATACCC
1 TTAGTTTACAAATTACCAAAATACCC
*
95085992 TTAGTTTGCAAAATTACCAAAATACCC
1 TTAGTTTAC-AAATTACCAAAATACCC
* *
95086019 CTGGTTTGTA-AAATTACCAAAATACCC
1 TTAG-TT-TACAAATTACCAAAATACCC
* * ** * **
95086046 TAATTTTTGAACTTACTGAAATACCC
1 TTAGTTTACAAATTACCAAAATACCC
* *
95086072 TTGACTTGTA-AAATTACCAAAGTA-CC
1 TT-AGTT-TACAAATTACCAAAATACCC
*
95086098 TCTAATTTACAAAATTACC
1 T-TAGTTTAC-AAATTACC
95086117 GTTTTACTCT
Statistics
Matches: 95, Mismatches: 21, Indels: 17
0.71 0.16 0.13
Matches are distributed among these distances:
25 3 0.03
26 31 0.33
27 57 0.60
28 3 0.03
29 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.07, T:0.32
Consensus pattern (26 bp):
TTAGTTTACAAATTACCAAAATACCC
Found at i:95086097 original size:27 final size:27
Alignment explanation
Indices: 95085976--95086097 Score: 122
Period size: 27 Copynumber: 4.6 Consensus size: 27
95085966 TTAGTTTACC
*
95085976 AATTACCAAAATACCCTT-AGTTTGCAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
95086003 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
95086030 AATTACCAAAATACCC-TAATTTTTGA
1 AATTACCAAAATACCCTTGATTTGTAA
* ** *
95086056 ACTTACTGAAATACCCTTGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
95086083 AATTACCAAAGTACC
1 AATTACCAAAATACC
95086098 TCTAATTTAC
Statistics
Matches: 75, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
26 19 0.25
27 56 0.75
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:95086132 original size:27 final size:27
Alignment explanation
Indices: 95086102--95086562 Score: 510
Period size: 27 Copynumber: 17.1 Consensus size: 27
95086092 AGTACCTCTA
* *
95086102 ATTTACAAAATTACCGTTTTACTCTTG
1 ATTTACAGAATTACCGTTTTACCCTTG
** *
95086129 ATTTACAGAATTATTGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTTG
* * **
95086156 ATTTATAGAATTACTGTTTTACCCTCA
1 ATTTACAGAATTACCGTTTTACCCTTG
*
95086183 ATTCACAGAATTACCGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTTG
* * *
95086210 ATTTACAGAATCACTGTTTTACCCTTA
1 ATTTACAGAATTACCGTTTTACCCTTG
* * * * *
95086237 AGTTATAAAATTATCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTTG
*
95086264 ATTCACAGAATTACCGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTTG
* *
95086291 ATTTACAGAATCACTGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTTG
* * *
95086318 AGTTACAGAATTATCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTTG
* ** *
95086345 ATTTATAGAATTATTGTTTTACCCTAG
1 ATTTACAGAATTACCGTTTTACCCTTG
*
95086372 ATTCACAGAATTACCGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTTG
* *
95086399 ATTTACAGAATCACTGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTTG
* * * *
95086426 AGTTACAGAA-TATCGTTCTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTTG
* *
95086452 ATTCACAAAATTACCGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTTG
* * * *
95086479 ATTTATAGAATCACTGTTTTGCCCTTG
1 ATTTACAGAATTACCGTTTTACCCTTG
* * *
95086506 AGTTACAGAATTATCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTTG
*
95086533 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTTG
95086560 ATT
1 ATT
95086563 GTGAAATTAC
Statistics
Matches: 355, Mismatches: 78, Indels: 2
0.82 0.18 0.00
Matches are distributed among these distances:
26 18 0.05
27 337 0.95
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTTG
Found at i:95086597 original size:27 final size:27
Alignment explanation
Indices: 95086567--95086813 Score: 352
Period size: 27 Copynumber: 9.1 Consensus size: 27
95086557 TCGATTGTGA
* *
95086567 AATTACTGAAATACCCCTGTAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
95086594 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
95086621 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
95086648 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
95086675 AATTACC-AAGATACCCCTGTAGGGTAG
1 AATTACCGAA-ATACCCCTGTAGGGTAG
* * *
95086702 AATTACTGAAATACCCCTTTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
95086729 TATTATCGAAATACCCTTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
95086756 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
95086783 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
95086810 AATT
1 AATT
95086814 TCCATTTTGC
Statistics
Matches: 196, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.01
27 192 0.98
28 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:95087081 original size:28 final size:28
Alignment explanation
Indices: 95087041--95087130 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
95087031 GGAGGAAGCG
95087041 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
95087069 TTCTGGTGGCTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
95087096 TTCTGGTGGCTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
95087123 ATCTGGTG
1 TTCTGGTG
95087131 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
26 8 0.14
27 23 0.40
28 27 0.47
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:95087147 original size:27 final size:26
Alignment explanation
Indices: 95087040--95087147 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
95087030 TGGAGGAAGC
* *
95087040 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGTCAC-AATATCT
* *
95087067 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTCTGTCAC-AATATCT
95087095 GTTCTGGTGGCTCTGTCACAATATCT
1 GTTCTGGTGGCTCTGTCACAATATCT
* *
95087121 GTATCTGGTGACTCTGTCACAACATCT
1 GT-TCTGGTGGCTCTGTCACAATATCT
95087148 ATTGACCGAT
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
26 9 0.12
27 39 0.52
28 27 0.36
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGTCACAATATCT
Found at i:95087226 original size:20 final size:20
Alignment explanation
Indices: 95087201--95087241 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
95087191 TGTGTGCCAT
95087201 TATTGTGGGA-TTCGTATCGA
1 TATTGT-GGACTTCGTATCGA
*
95087221 TATTGTGGACTTCGTGTCGA
1 TATTGTGGACTTCGTATCGA
95087241 T
1 T
95087242 TATAGACCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.17, C:0.12, G:0.29, T:0.41
Consensus pattern (20 bp):
TATTGTGGACTTCGTATCGA
Found at i:95087290 original size:22 final size:22
Alignment explanation
Indices: 95087258--95087316 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
95087248 CCCGTTATTG
*
95087258 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
95087280 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
95087302 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
95087317 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:95087526 original size:27 final size:26
Alignment explanation
Indices: 95087468--95087539 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 26
95087458 AAGTGGCTTT
* * *
95087468 GCCACATTATCTGTTTTGGTGGCTCG
1 GCCACAATATCTGTTCTGGTGACTCG
*
95087494 GCCACAATATCTGTATCTGGTGACTCT
1 GCCACAATATCTGT-TCTGGTGACTCG
*
95087521 GTCACAATATCTGTTCTGG
1 GCCACAATATCTGTTCTGG
95087540 CAGCCATGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 18 0.45
27 22 0.55
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GCCACAATATCTGTTCTGGTGACTCG
Found at i:95087674 original size:6 final size:6
Alignment explanation
Indices: 95087657--95087746 Score: 60
Period size: 6 Copynumber: 14.8 Consensus size: 6
95087647 TTGCATTCAC
* * * *
95087657 ATTCTA ATTCTG ATTCTG -TTACTA ATACTG ATTCAG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
95087705 -TTACTG ATACTG ATTCTA ATTCTG -TCACCTG ATTCTG ATTCT
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCT
95087747 CATTTTGGTT
Statistics
Matches: 64, Mismatches: 13, Indels: 14
0.70 0.14 0.15
Matches are distributed among these distances:
5 5 0.08
6 53 0.83
7 5 0.08
8 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:95087690 original size:24 final size:24
Alignment explanation
Indices: 95087663--95087746 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
95087653 TCACATTCTA
95087663 ATTCTGATTCTG-TTACTAATACTG
1 ATTCTGATTCTGATT-CTAATACTG
* **
95087687 ATTCAGATTCTGATTCTGTTACTG
1 ATTCTGATTCTGATTCTAATACTG
* * *
95087711 ATACTGATTCTAATTCT-GTCACCTG
1 ATTCTGATTCTGATTCTAAT-A-CTG
95087736 ATTCTGATTCT
1 ATTCTGATTCT
95087747 CATTTTGGTT
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
23 1 0.02
24 33 0.67
25 15 0.31
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (24 bp):
ATTCTGATTCTGATTCTAATACTG
Found at i:95087699 original size:30 final size:30
Alignment explanation
Indices: 95087657--95087728 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
95087647 TTGCATTCAC
95087657 ATTCTAATTCTGATTCTGTTACTAATACTG
1 ATTCTAATTCTGATTCTGTTACTAATACTG
*
95087687 ATTC-AGATTCTGATTCTGTTACTGATACTG
1 ATTCTA-ATTCTGATTCTGTTACTAATACTG
95087717 ATTCTAATTCTG
1 ATTCTAATTCTG
95087729 TCACCTGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
29 1 0.03
30 37 0.95
31 1 0.03
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (30 bp):
ATTCTAATTCTGATTCTGTTACTAATACTG
Found at i:95087815 original size:31 final size:32
Alignment explanation
Indices: 95087780--95087843 Score: 78
Period size: 34 Copynumber: 2.0 Consensus size: 32
95087770 TGTTTCTTAT
*
95087780 TCTG-TAATGGGCTAAGGTCC-ATCTGGTACTG
1 TCTGTTAATGGGCTAAGGCCCGAT-TGGTACTG
95087811 TCTGTTATAATGGGCTAAGGCCCGATTGGTACT
1 TCTG-T-TAATGGGCTAAGGCCCGATTGGTACT
95087844 AAAACTGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
31 4 0.14
34 22 0.79
35 2 0.07
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (32 bp):
TCTGTTAATGGGCTAAGGCCCGATTGGTACTG
Found at i:95088835 original size:19 final size:19
Alignment explanation
Indices: 95088809--95088850 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
95088799 AAGTCTATTT
95088809 AAAA-CAAAA-ATTTTCCA
1 AAAATCAAAATATTTTCCA
*
95088826 GAAAATCAAAATTTTTTCCA
1 -AAAATCAAAATATTTTCCA
95088846 AAAAT
1 AAAAT
95088851 TTTTGATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 10 0.48
20 7 0.33
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAATCAAAATATTTTCCA
Found at i:95090148 original size:15 final size:15
Alignment explanation
Indices: 95090121--95090163 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
95090111 GGTTTCAGCT
95090121 AGAA-GAAAAAGAAA
1 AGAAGGAAAAAGAAA
95090135 A-AAGGAAGAAAGAAA
1 AGAAGGAA-AAAGAAA
95090150 ATGAAGGAAAAAGA
1 A-GAAGGAAAAAGA
95090164 GAGGAAGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.08
14 4 0.16
15 8 0.32
16 5 0.20
17 6 0.24
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (15 bp):
AGAAGGAAAAAGAAA
Found at i:95094593 original size:37 final size:38
Alignment explanation
Indices: 95094507--95094632 Score: 130
Period size: 37 Copynumber: 3.3 Consensus size: 38
95094497 AAACCAGAAC
* * * **
95094507 ATAACACCAGCACGAA-CCTACGGGACTTTAAACTCATAT
1 ATAATACCAGCACGAAGCCTAC-GGAATTT-AACCCGGAT
* * * *
95094546 ATAATACCAGCACTAGGCCTGCGG-ATTTAACCTGGAT
1 ATAATACCAGCACGAAGCCTACGGAATTTAACCCGGAT
95094583 ATAATACCAGCACGAAGCCTACGGAATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGAATTTAACCCGGAT
*
95094621 ATAATTCCAGCA
1 ATAATACCAGCA
95094633 TATAGCCTGC
Statistics
Matches: 71, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
37 26 0.37
38 26 0.37
39 15 0.21
40 4 0.06
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTACGGAATTTAACCCGGAT
Found at i:95094612 original size:38 final size:38
Alignment explanation
Indices: 95094507--95094632 Score: 130
Period size: 38 Copynumber: 3.3 Consensus size: 38
95094497 AAACCAGAAC
* * * **
95094507 ATAACACCAGCACGAA-CCTACGGGACTTTAAACTCATAT
1 ATAATACCAGCACGAAGCCTAC-GGAATTTAACCT-GGAT
* * *
95094546 ATAATACCAGCACTAGGCCTGCGG-ATTTAACCTGGAT
1 ATAATACCAGCACGAAGCCTACGGAATTTAACCTGGAT
*
95094583 ATAATACCAGCACGAAGCCTACGGAATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGAATTTAACCTGGAT
*
95094621 ATAATTCCAGCA
1 ATAATACCAGCA
95094633 TATAGCCTGC
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
37 23 0.32
38 30 0.42
39 15 0.21
40 4 0.06
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTACGGAATTTAACCTGGAT
Found at i:95099774 original size:53 final size:53
Alignment explanation
Indices: 95099690--95099895 Score: 125
Period size: 53 Copynumber: 3.8 Consensus size: 53
95099680 TTCCTTTTTA
* * *
95099690 AACTTACCATTTCCATGTCTTGACATAGTCTTACGTGGTG-TCCTTGCCTTATG
1 AACTCACCATTGCCATGTCTTGACATAGTCTTACATGG-GATCCTTGCCTTATG
* * *
95099743 AACTCACCATTGCCAT-TCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTCACCATTGCCATGT-CTTGACATAGTCTTACATGGGATCCTTGCCTTAT-G
** * * * * * * *
95099797 TAGTTTATCAATGCCATGCCTTGACATTGTCTTACAT--GATTCCCTTGCCTTGTAA
1 -AACTCACCATTGCCATGTCTTGACATAGTCTTACATGGGA-T-CCTTGCCTTAT-G
* * * * * *
95099852 AACTTACCAATGCCATGCCTTGGCAT-GTCTTACTTGGTATCCTT
1 AACTCACCATTGCCATGTCTTGACATAGTCTTACATGGGATCCTT
95099896 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 24, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
52 2 0.02
53 56 0.47
54 25 0.21
55 37 0.31
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGTCTTGACATAGTCTTACATGGGATCCTTGCCTTATG
Found at i:95108394 original size:22 final size:22
Alignment explanation
Indices: 95108364--95108408 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
95108354 ATTGTATGAT
*
95108364 TTATGAAT-GCATGATAATTGCA
1 TTATGAATGGCATGA-AAATGCA
*
95108386 TTATTAATGGCATGAAAATGCA
1 TTATGAATGGCATGAAAATGCA
95108408 T
1 T
95108409 CTTTGATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (22 bp):
TTATGAATGGCATGAAAATGCA
Found at i:95117434 original size:25 final size:25
Alignment explanation
Indices: 95117405--95117452 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95117395 TTATAATATG
* * *
95117405 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
95117430 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
95117453 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:95117502 original size:9 final size:9
Alignment explanation
Indices: 95117490--95117546 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
95117480 TTTGATAAAC
95117490 ATGATATGT
1 ATGATATGT
*
95117499 ATGATATGCAC
1 ATGATATG--T
*
95117510 ATGACATGT
1 ATGATATGT
*
95117519 ATGATATGCAC
1 ATGATATG--T
95117530 ATGATATGT
1 ATGATATGT
95117539 ATGATATG
1 ATGATATG
95117547 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:95117513 original size:20 final size:20
Alignment explanation
Indices: 95117488--95117558 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
95117478 ATTTTGATAA
95117488 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95117508 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
95117528 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95117548 ACATGAGATGT
1 ACATGATATGT
95117559 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95117535 original size:11 final size:11
Alignment explanation
Indices: 95117499--95117553 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
95117489 CATGATATGT
95117499 ATGATATGCAC
1 ATGATATGCAC
* *
95117510 ATGACATG--T
1 ATGATATGCAC
95117519 ATGATATGCAC
1 ATGATATGCAC
*
95117530 ATGATATG--T
1 ATGATATGCAC
95117539 ATGATATGCAC
1 ATGATATGCAC
95117550 ATGA
1 ATGA
95117554 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:95117635 original size:23 final size:23
Alignment explanation
Indices: 95117605--95117771 Score: 280
Period size: 23 Copynumber: 7.1 Consensus size: 23
95117595 AGGAAGTGCA
95117605 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
95117628 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
95117652 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
95117675 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
95117699 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
95117722 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
95117745 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
95117769 AAA
1 AAA
95117772 AGAGGCTAGG
Statistics
Matches: 136, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
23 70 0.51
24 66 0.49
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:95117660 original size:24 final size:23
Alignment explanation
Indices: 95117604--95117793 Score: 274
Period size: 24 Copynumber: 8.0 Consensus size: 23
95117594 GAGGAAGTGC
95117604 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
95117627 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
95117650 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
95117674 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
95117697 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
95117721 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
95117745 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
95117769 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
95117793 A
1 A
95117794 TGATAAAGCA
Statistics
Matches: 153, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
23 65 0.42
24 78 0.51
25 10 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:95117672 original size:47 final size:47
Alignment explanation
Indices: 95117603--95117771 Score: 320
Period size: 47 Copynumber: 3.6 Consensus size: 47
95117593 GGAGGAAGTG
95117603 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
95117650 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
95117697 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
95117744 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
95117772 AGAGGCTAGG
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:95125537 original size:25 final size:25
Alignment explanation
Indices: 95125508--95125555 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95125498 TTATAATATG
* * *
95125508 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
95125533 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
95125556 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:95125616 original size:20 final size:20
Alignment explanation
Indices: 95125591--95125661 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
95125581 ATTTTGATAA
95125591 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95125611 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95125631 ACATGATATATATGATATGC
1 ACATGATATGTATGATATGC
*
95125651 ACATGAGATGT
1 ACATGATATGT
95125662 TCATAAATGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95125638 original size:11 final size:11
Alignment explanation
Indices: 95125602--95125656 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
95125592 CATGATATGT
95125602 ATGATATGCAC
1 ATGATATGCAC
* *
95125613 ATGACATG--T
1 ATGATATGCAC
95125622 ATGATATGCAC
1 ATGATATGCAC
*
95125633 ATGATAT--AT
1 ATGATATGCAC
95125642 ATGATATGCAC
1 ATGATATGCAC
95125653 ATGA
1 ATGA
95125657 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:95125738 original size:23 final size:23
Alignment explanation
Indices: 95125708--95125803 Score: 174
Period size: 23 Copynumber: 4.1 Consensus size: 23
95125698 AGGAAGTGCA
95125708 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
95125731 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
95125755 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
95125778 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
95125801 AAA
1 AAA
95125804 AGAGGCTAGG
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
23 48 0.69
24 22 0.31
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:95125775 original size:47 final size:47
Alignment explanation
Indices: 95125706--95125810 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
95125696 GGAGGAAGTG
95125706 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
95125753 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
95125800 TAAAAGAGGCT
1 CAAAAG-GGCT
95125811 AGGCTTCCAG
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:95130808 original size:68 final size:70
Alignment explanation
Indices: 95130736--95130933 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
95130726 ACACCCTGTA
* * * *
95130736 GTAGCTAGGTCACATGTGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
95130798 ATAAAT
65 ATAAAT
* *
95130804 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
95130869 ATAAAT
65 ATAAAT
** *
95130875 GTAGCTAGGTCGGATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
95130934 AGACAAATCG
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 3 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCACATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:95130858 original size:71 final size:71
Alignment explanation
Indices: 95130770--95130933 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
95130760 GAGATGTATC
95130770 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
95130835 AGGACA
66 AGGACA
*
95130841 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGGATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
95130906 AGGACA
66 AGGACA
95130912 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
95130934 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:95132832 original size:22 final size:21
Alignment explanation
Indices: 95132771--95132833 Score: 56
Period size: 22 Copynumber: 3.0 Consensus size: 21
95132761 TGTGTCTCAT
95132771 AATCATGAACTCAGACCAC-A
1 AATCATGAACTCAGACCACAA
* * ** * *
95132791 ACTTATGAGTTCAAATCACATA
1 AATCATGAACTCAGACCACA-A
95132813 AATCATGAACTCAGACCACAA
1 AATCATGAACTCAGACCACAA
95132834 CTCAATGAGT
Statistics
Matches: 29, Mismatches: 12, Indels: 3
0.66 0.27 0.07
Matches are distributed among these distances:
20 13 0.45
21 1 0.03
22 15 0.52
ACGTcount: A:0.44, C:0.25, G:0.10, T:0.21
Consensus pattern (21 bp):
AATCATGAACTCAGACCACAA
Found at i:95138567 original size:28 final size:28
Alignment explanation
Indices: 95138502--95138602 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
95138492 ATAGTGAATC
*
95138502 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
95138531 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
95138559 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
95138589 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95138603 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:95146525 original size:28 final size:28
Alignment explanation
Indices: 95146460--95146560 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
95146450 ATAGTGAATC
*
95146460 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
95146489 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
95146517 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
95146547 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95146561 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:95151375 original size:41 final size:41
Alignment explanation
Indices: 95151316--95151402 Score: 147
Period size: 41 Copynumber: 2.1 Consensus size: 41
95151306 AGCATTTCAT
*
95151316 TTTAATAATAAGGAATTTATCGCAATTATATCAATTAAACA
1 TTTATTAATAAGGAATTTATCGCAATTATATCAATTAAACA
*
95151357 TTTATTAATAAGGCATTTATCGCAATTATATCAATTAAACA
1 TTTATTAATAAGGAATTTATCGCAATTATATCAATTAAACA
*
95151398 GTTAT
1 TTTAT
95151403 ACACGTACAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (41 bp):
TTTATTAATAAGGAATTTATCGCAATTATATCAATTAAACA
Found at i:95154217 original size:43 final size:41
Alignment explanation
Indices: 95154149--95154229 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 41
95154139 AAAACACATA
* *
95154149 TATCACATACAATGCCATATCCCAGATATGGTCTTACATGT
1 TATCACATACAATGCCATATCCCAGACAGGGTCTTACATGT
* *
95154190 TATCACATATCTATGCCTCTATCCCAGACAGGGTCTTACA
1 TATCACATA-CAATGCC-ATATCCCAGACAGGGTCTTACA
95154230 AGTAATATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 9 0.26
42 6 0.18
43 19 0.56
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (41 bp):
TATCACATACAATGCCATATCCCAGACAGGGTCTTACATGT
Found at i:95157130 original size:40 final size:40
Alignment explanation
Indices: 95157064--95157214 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
95157054 AAATTGAATG
* * *
95157064 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
95157103 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
95157143 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
95157183 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
95157215 ACGTGATTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:95157228 original size:40 final size:40
Alignment explanation
Indices: 95157100--95157230 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
95157090 TATGCTGGAA
* * *
95157100 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
95157140 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
95157180 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
95157220 ATTATATCCGG
1 ATTATATCCGG
95157231 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:95165148 original size:40 final size:40
Alignment explanation
Indices: 95165103--95165229 Score: 136
Period size: 40 Copynumber: 3.2 Consensus size: 40
95165093 CTGGAAATTA
* * *
95165103 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATAC
* *
95165144 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATAC
*
95165183 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGA-TAC
95165223 TATCCGG
1 TATCCGG
95165230 TTATATTCCG
Statistics
Matches: 73, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
39 6 0.08
40 64 0.88
41 3 0.04
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATAC
Found at i:95168377 original size:40 final size:39
Alignment explanation
Indices: 95168212--95168395 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
95168202 AAATTGAATG
* * *
95168212 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
95168252 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
95168292 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
95168332 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
95168371 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
95168396 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:95168420 original size:80 final size:81
Alignment explanation
Indices: 95168252--95168440 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
95168242 GCTGGAAATT
* * * *
95168252 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
95168317 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
95168333 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
95168396 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
95168412 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
95168441 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:95179341 original size:40 final size:39
Alignment explanation
Indices: 95179286--95179489 Score: 212
Period size: 40 Copynumber: 5.1 Consensus size: 39
95179276 TGAATGAAAC
* * *
95179286 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
* *
95179326 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
95179366 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * * * *
95179406 CTGGGCTAAGACCCGAATGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* * **
95179446 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
95179486 CCGG
1 CCGG
95179490 TTAGATTCCG
Statistics
Matches: 139, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 134 0.96
41 2 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:95179483 original size:80 final size:80
Alignment explanation
Indices: 95179286--95179489 Score: 257
Period size: 80 Copynumber: 2.5 Consensus size: 80
95179276 TGAATGAAAC
* * * *
95179286 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
* ***
95179351 TGCGAGTTGTTAAAT
66 TGCAAGTTACCAAAT
* * * * *
95179366 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCTGGGCTAAGACCCGAATGCATTT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTC
95179430 GTGCAAGTTACCAAAT
65 GTGCAAGTTACCAAAT
* *
95179446 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGG
95179490 TTAGATTCCG
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 99 0.95
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:95182216 original size:46 final size:47
Alignment explanation
Indices: 95182161--95182284 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 47
95182151 GATATGTGTG
* *
95182161 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGA-GAG-T
1 CTAGTGTAAGACATGTCTGGGACATGCATCAG--ACATTGA-GACGAGAA
*
95182208 C-AGTGTAAGACATGTCTGGGATATGCAT-AGACATTGAGACGAGAA
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGACATTGAGACGAGAA
95182253 CTAGTGTAAGACATGTCTGGGACATGCATCAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAG
95182285 CCTCGAGATA
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
43 7 0.10
44 4 0.06
45 2 0.03
46 52 0.76
47 3 0.04
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (47 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGACATTGAGACGAGAA
Found at i:95182377 original size:43 final size:44
Alignment explanation
Indices: 95182311--95182418 Score: 182
Period size: 43 Copynumber: 2.5 Consensus size: 44
95182301 CTAGTGTAAA
* *
95182311 ACCTATTTGGGACATGGCATCAGCTTGTTGAGTGTC-GTGCAAG
1 ACCTGTTTGGGACATGGCATCAGCTTGTTGACTGTCAGTGCAAG
95182354 ACCTGTTTGGGACATGGCATCAGCTTGTTGACTGTCAGTGCAAG
1 ACCTGTTTGGGACATGGCATCAGCTTGTTGACTGTCAGTGCAAG
*
95182398 ACCTGTTTGGGACATGACATC
1 ACCTGTTTGGGACATGGCATC
95182419 GACACCGATA
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
43 34 0.56
44 27 0.44
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (44 bp):
ACCTGTTTGGGACATGGCATCAGCTTGTTGACTGTCAGTGCAAG
Found at i:95182527 original size:49 final size:48
Alignment explanation
Indices: 95182163--95182520 Score: 177
Period size: 49 Copynumber: 7.7 Consensus size: 48
95182153 TATGTGTGCT
* * * * *
95182163 AGTGTAAGACATGTCTGGGACAT-GCATCGGC-CACAT-TATGAGAGTC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACTC-GATGTATGAAAGTC
* * * * * * *
95182209 AGTGTAAGACATGTCTGGGATAT-GCATAGACATTGA-G-ACGAGAACT-
1 AGTGTAAGACCTGTTTGGGACATGGCATCGAC-TCGATGTATGA-AAGTC
* * *
95182255 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGA-GATAT-ACAAG-C
1 AGTGTAAGACCTGTTTGGGACATGGCATC-GACTCGATG-TATGA-AAGTC
* * **
95182302 TAGTGTAAAACCTATTTGGGACATGGCATC-AGCT---TGT-TGAGTGTC
1 -AGTGTAAGACCTGTTTGGGACATGGCATCGA-CTCGATGTATGAAAGTC
* **
95182347 -GTGCAAGACCTGTTTGGGACATGGCATC-AGCT---TGT-TGACTGTC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGA-CTCGATGTATGAAAGTC
* * * * *
95182390 AGTGCAAGACCTGTTTGGGACATGACATCGACACCGATAG-ATGAGAGCC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGAC-TCGAT-GTATGAAAGTC
* * *
95182439 AGTGTAAGACTTGTTTGGGACATGGCATCGGCCTCGATGTATGAAAGTT
1 AGTGTAAGACCTGTTTGGGACATGGCATC-GACTCGATGTATGAAAGTC
95182488 AGTGTAAGACCTGTTTGGGACATGGCATCGACT
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACT
95182521 TTGATGTGCT
Statistics
Matches: 247, Mismatches: 41, Indels: 46
0.74 0.12 0.14
Matches are distributed among these distances:
43 39 0.16
44 30 0.12
45 4 0.02
46 62 0.25
47 8 0.03
48 27 0.11
49 75 0.30
50 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCTGTTTGGGACATGGCATCGACTCGATGTATGAAAGTC
Found at i:95184580 original size:35 final size:35
Alignment explanation
Indices: 95184541--95184650 Score: 148
Period size: 35 Copynumber: 3.1 Consensus size: 35
95184531 GCACCAGTCA
* * *
95184541 AAGGCGACCTTAAAAAGGTTAGGATAGACTTGTCT
1 AAGGCAACCTTAAAAAGGTTGGGATAGACTCGTCT
*
95184576 AAGGCAAACTTAAAAAGGTTGGGATAGACTCGTCT
1 AAGGCAACCTTAAAAAGGTTGGGATAGACTCGTCT
* * * *
95184611 AAGGTACCCTTAAAAAGGTTGGGATAGACTCATTT
1 AAGGCAACCTTAAAAAGGTTGGGATAGACTCGTCT
95184646 AAGGC
1 AAGGC
95184651 GACTTTGTAA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (35 bp):
AAGGCAACCTTAAAAAGGTTGGGATAGACTCGTCT
Found at i:95185418 original size:35 final size:35
Alignment explanation
Indices: 95185277--95185412 Score: 184
Period size: 35 Copynumber: 3.9 Consensus size: 35
95185267 CTCAAAGGTG
*
95185277 ACCTTAAAAGGGTTGGGATAGACCTATCTAAGTCA
1 ACCTTAAAAGGGTTGGGATAGACCCATCTAAGTCA
* * *
95185312 ACCTTAAAAGGGTTGGAATAGACTCGTCTAAGTCA
1 ACCTTAAAAGGGTTGGGATAGACCCATCTAAGTCA
* * * *
95185347 ACCTTAAAAAGGTTGGGATAGATCCGTCTAAGGCA
1 ACCTTAAAAGGGTTGGGATAGACCCATCTAAGTCA
95185382 ACCTTAGAAA-GGTTGGGATAGACCCATCTAA
1 ACCTTA-AAAGGGTTGGGATAGACCCATCTAA
95185413 TGCAACTTTG
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
35 86 0.97
36 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (35 bp):
ACCTTAAAAGGGTTGGGATAGACCCATCTAAGTCA
Found at i:95189383 original size:13 final size:13
Alignment explanation
Indices: 95189365--95189390 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95189355 ACATGGGTGT
95189365 GTGGACCACACGA
1 GTGGACCACACGA
95189378 GTGGACCACACGA
1 GTGGACCACACGA
95189391 CCATGCAGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.31, T:0.08
Consensus pattern (13 bp):
GTGGACCACACGA
Found at i:95192048 original size:40 final size:39
Alignment explanation
Indices: 95191956--95192101 Score: 148
Period size: 40 Copynumber: 3.7 Consensus size: 39
95191946 CCGCACCAAG
* * * * * * *
95191956 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC-AAT
* * *
95191996 GCCTTCGGGTCTTAGCCTGGATTTAACAACTGGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC-AAT
* *
95192036 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAA-T
*
95192076 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
95192102 TTTTCAGCAT
Statistics
Matches: 88, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 2 0.02
40 86 0.98
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAT
Found at i:95201624 original size:55 final size:55
Alignment explanation
Indices: 95201491--95201617 Score: 166
Period size: 55 Copynumber: 2.3 Consensus size: 55
95201481 GATATGGCCA
* *
95201491 TGGTCGATCCTGTTAAAACAACACGGGCGTACGACACGCCCGTGTGGAAGAACCG
1 TGGTCGAACCTGTTAAAACAACACAGGCGTACGACACGCCCGTGTGGAAGAACCG
* * * ** *
95201546 TGGGCTAACCTATTAAAACAACACAGGCGTTTGACACGCCCGTGTGGAA-CACCTG
1 TGGTCGAACCTGTTAAAACAACACAGGCGTACGACACGCCCGTGTGGAAGAACC-G
95201601 TGGTCGAACCTGTTAAA
1 TGGTCGAACCTGTTAAA
95201618 CTAACACGAG
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 3 0.05
55 57 0.95
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (55 bp):
TGGTCGAACCTGTTAAAACAACACAGGCGTACGACACGCCCGTGTGGAAGAACCG
Found at i:95205752 original size:21 final size:21
Alignment explanation
Indices: 95205714--95205753 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
95205704 ACTACTCCAA
*
95205714 AGAAGCCGATTGATTCATCTT
1 AGAAGCCGATTCATTCATCTT
95205735 AGAAGCCGGATTCA-TCATC
1 AGAAGCC-GATTCATTCATC
95205754 AAGATTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (21 bp):
AGAAGCCGATTCATTCATCTT
Found at i:95213194 original size:22 final size:22
Alignment explanation
Indices: 95213169--95213213 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
95213159 ATTCATGCCT
*
95213169 TAGTTGTTGATATGCCATTTAC
1 TAGTTGTTAATATGCCATTTAC
95213191 TAGTTGTTAATATGCCATTTAC
1 TAGTTGTTAATATGCCATTTAC
95213213 T
1 T
95213214 CACAATTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (22 bp):
TAGTTGTTAATATGCCATTTAC
Found at i:95218893 original size:18 final size:18
Alignment explanation
Indices: 95218872--95218914 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
95218862 CCTTTCCCCC
*
95218872 TTCTTTCATTTGTTTATT
1 TTCTTTCATTTATTTATT
* *
95218890 TTCTTCCGTTTATTTATT
1 TTCTTTCATTTATTTATT
*
95218908 TGCTTTC
1 TTCTTTC
95218915 TTTTTATGCG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.09, C:0.16, G:0.07, T:0.67
Consensus pattern (18 bp):
TTCTTTCATTTATTTATT
Found at i:95222896 original size:40 final size:40
Alignment explanation
Indices: 95222805--95222906 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
95222795 TATCACGATT
* ** *
95222805 GCACAAATGCCTTCGGGTCTTAGCCCGAATAGAATGACTC
1 GCACCAATGCCTTCGGGTCTTAGCCCGAATAGAACCACTA
* * * *
95222845 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACCAATGCCTTCGGGTCTTAGCCCGAATAGAACCACTA
*
95222885 GCACCATTGCCTTCGGGTCTTA
1 GCACCAATGCCTTCGGGTCTTA
95222907 ACTCGGTTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
GCACCAATGCCTTCGGGTCTTAGCCCGAATAGAACCACTA
Found at i:95228528 original size:17 final size:17
Alignment explanation
Indices: 95228506--95228544 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
95228496 AAAATACTTT
*
95228506 ATAAAAT-ATTTCACGAA
1 ATAAAATAATTT-ACAAA
95228523 ATAAAATAATTTACAAA
1 ATAAAATAATTTACAAA
95228540 ATAAA
1 ATAAA
95228545 TTCCGAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.28
Consensus pattern (17 bp):
ATAAAATAATTTACAAA
Found at i:95232960 original size:15 final size:15
Alignment explanation
Indices: 95232940--95232969 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
95232930 TGAAAAAGTC
*
95232940 TTTTAAGTTTTTTTT
1 TTTTAAATTTTTTTT
95232955 TTTTAAATTTTTTTT
1 TTTTAAATTTTTTTT
95232970 ATTCAATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (15 bp):
TTTTAAATTTTTTTT
Found at i:95233403 original size:10 final size:9
Alignment explanation
Indices: 95233375--95233526 Score: 82
Period size: 9 Copynumber: 16.4 Consensus size: 9
95233365 CATGTGACAA
95233375 AAAAATTA-
1 AAAAATTAT
*
95233383 AAAAA-AAT
1 AAAAATTAT
95233391 AAAAATTAGT
1 AAAAATTA-T
*
95233401 AAAAGTTAT
1 AAAAATTAT
95233410 AAAAAATT-T
1 -AAAAATTAT
* *
95233419 CAAACTT-T
1 AAAAATTAT
*
95233427 AATAAAATAT
1 AA-AAATTAT
**
95233437 AAAAAAAATT
1 AAAAATTA-T
95233447 AAAAATTATT
1 AAAAATTA-T
95233457 AAAAATTAT
1 AAAAATTAT
*
95233466 TAAAA-TAT
1 AAAAATTAT
95233474 ATAAAATCGTAT
1 A-AAAAT--TAT
*
95233486 AAATA-TAT
1 AAAAATTAT
95233494 AAAAATTAT
1 AAAAATTAT
*
95233503 AAAAATAATAA
1 AAAAAT--TAT
95233514 AAAAATTAT
1 AAAAATTAT
95233523 AAAA
1 AAAA
95233527 TACACTAAAA
Statistics
Matches: 112, Mismatches: 18, Indels: 27
0.71 0.11 0.17
Matches are distributed among these distances:
7 1 0.01
8 27 0.24
9 35 0.31
10 34 0.30
11 11 0.10
12 4 0.04
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:95233448 original size:20 final size:19
Alignment explanation
Indices: 95233428--95233528 Score: 77
Period size: 20 Copynumber: 5.4 Consensus size: 19
95233418 TCAAACTTTA
95233428 ATAAAATATAAAAAAAATT
1 ATAAAATATAAAAAAAATT
**
95233447 A-AAAAT-TATTAAAAATT
1 ATAAAATATAAAAAAAATT
* ***
95233464 ATTAAAATATATAAAATCGT
1 A-TAAAATATAAAAAAAATT
*
95233484 AT-AAATAT-ATAAAAATT
1 ATAAAATATAAAAAAAATT
95233501 ATAAAA-ATAATAAAAAAATT
1 ATAAAATAT-A-AAAAAAATT
95233521 ATAAAATA
1 ATAAAATA
95233529 CACTAAAAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
17 18 0.29
18 14 0.23
19 7 0.11
20 22 0.35
21 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (19 bp):
ATAAAATATAAAAAAAATT
Found at i:95233470 original size:29 final size:29
Alignment explanation
Indices: 95233379--95233470 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
95233369 TGACAAAAAA
* * *
95233379 ATTAAAAAAAATAAAAATTAGTAAAAGTT
1 ATTAAAAAAATTAAAAATTATTAAAAATT
** * *
95233408 A-T-AAAAAATTTCAAACT-TTAATAAAAT
1 ATTAAAAAAATTAAAAATTATTAA-AAATT
*
95233435 ATAAAAAAAATTAAAAATTATTAAAAATT
1 ATTAAAAAAATTAAAAATTATTAAAAATT
95233464 ATTAAAA
1 ATTAAAA
95233471 TATATAAAAT
Statistics
Matches: 46, Mismatches: 13, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
26 3 0.07
27 15 0.33
28 1 0.02
29 23 0.50
30 4 0.09
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (29 bp):
ATTAAAAAAATTAAAAATTATTAAAAATT
Found at i:95233470 original size:37 final size:38
Alignment explanation
Indices: 95233429--95233527 Score: 105
Period size: 37 Copynumber: 2.6 Consensus size: 38
95233419 CAAACTTTAA
95233429 TAAAATATAAAAAAAATTAAAAATTAT-TAAAAATTAT
1 TAAAATATAAAAAAAATTAAAAATTATATAAAAATTAT
* *** *
95233466 TAAAATATATAAAATCGTATAAA-TATATAAAAATTAT
1 TAAAATATAAAAAAAATTAAAAATTATATAAAAATTAT
*
95233503 AAAAATA-ATAAAAAAATTATAAAAT
1 TAAAATATA-AAAAAAATTA-AAAAT
95233528 ACACTAAAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
36 4 0.09
37 40 0.85
38 3 0.06
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (38 bp):
TAAAATATAAAAAAAATTAAAAATTATATAAAAATTAT
Found at i:95233488 original size:56 final size:56
Alignment explanation
Indices: 95233376--95233528 Score: 145
Period size: 56 Copynumber: 2.8 Consensus size: 56
95233366 ATGTGACAAA
* * * * * *
95233376 AAAAT-TAAAAAAAA-TAAAAATTAGTAAAAGTTATAAAAAATTTCAAACTTTAAT
1 AAAATATAAAAAAAATTAAAAATTATTAAAAATTATAAAATATATAAAACTGTAAT
95233430 AAAATATAAAAAAAATTAAAAATTATTAAAAATTATTAAAATATATAAAA-TCGT-AT
1 AAAATATAAAAAAAATTAAAAATTATTAAAAATTA-TAAAATATATAAAACT-GTAAT
* * * *
95233486 -AAATATATAAAAATTATAAAAATAATAAAAAAATTATAAAATA
1 AAAATATAAAAAAAAT-TAAAAATTAT-TAAAAATTATAAAATA
95233529 CACTAAAAAA
Statistics
Matches: 83, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
54 5 0.06
55 22 0.27
56 36 0.43
57 20 0.24
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (56 bp):
AAAATATAAAAAAAATTAAAAATTATTAAAAATTATAAAATATATAAAACTGTAAT
Done.