Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 305 of 433
Found at i:95233537 original size:19 final size:18
Alignment explanation
Indices: 95233428--95233528 Score: 93
Period size: 19 Copynumber: 5.4 Consensus size: 18
95233418 TCAAACTTTA
*
95233428 ATAAAATATAAAAAAAATT
1 ATAAAATAT-ATAAAAATT
95233447 A-AAAAT-TATTAAAAATT
1 ATAAAATATA-TAAAAATT
95233464 ATTAAAATATAT-AAAATCGT
1 A-TAAAATATATAAAAAT--T
95233484 AT-AAATATATAAAAATT
1 ATAAAATATATAAAAATT
*
95233501 ATAAAAATAATAAAAAAATT
1 AT-AAAAT-ATATAAAAATT
95233521 ATAAAATA
1 ATAAAATA
95233529 CACTAAAAAA
Statistics
Matches: 70, Mismatches: 2, Indels: 21
0.75 0.02 0.23
Matches are distributed among these distances:
16 1 0.01
17 12 0.17
18 19 0.27
19 22 0.31
20 16 0.23
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (18 bp):
ATAAAATATATAAAAATT
Found at i:95233763 original size:10 final size:10
Alignment explanation
Indices: 95233706--95233870 Score: 65
Period size: 10 Copynumber: 16.7 Consensus size: 10
95233696 TTTTGGTAAG
95233706 ATAA-TTTTT
1 ATAATTTTTT
95233715 ATAATTTTTT
1 ATAATTTTTT
* **
95233725 TTACAAATTTT
1 ATA-ATTTTTT
95233736 AT-ATTTCTTT
1 ATAATTT-TTT
* *
95233746 ACATTTTTTT
1 ATAATTTTTT
95233756 ATAATTTTCTT
1 ATAATTTT-TT
* *
95233767 ACAA--CTTT
1 ATAATTTTTT
**
95233775 ATAAAATTTT
1 ATAATTTTTT
95233785 ATAATTTTTT
1 ATAATTTTTT
* *
95233795 CT-ATATTTT
1 ATAATTTTTT
*
95233804 ATTATTTTTT
1 ATAATTTTTT
**
95233814 ACGA-TTTTT
1 ATAATTTTTT
* *
95233823 ATGATTTTTA
1 ATAATTTTTT
*
95233833 ATAAGTTTTT
1 ATAATTTTTT
*
95233843 A-ATATTTTTA
1 ATA-ATTTTTT
*
95233853 ATATTTTTATT
1 ATAATTTT-TT
95233864 ATAATTT
1 ATAATTT
95233871 AATAATTTTT
Statistics
Matches: 112, Mismatches: 32, Indels: 22
0.67 0.19 0.13
Matches are distributed among these distances:
8 5 0.04
9 23 0.21
10 62 0.55
11 22 0.20
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:95233768 original size:21 final size:20
Alignment explanation
Indices: 95233708--95233784 Score: 59
Period size: 21 Copynumber: 3.8 Consensus size: 20
95233698 TTGGTAAGAT
*
95233708 AATTTTTATAATTTTTTTTAC
1 AATTTTTATAA-TTTTCTTAC
*
95233729 AAATTTTAT-A-TTTCTTTAC
1 AATTTTTATAATTTTC-TTAC
*
95233748 ATTTTTTTATAATTTTCTTAC
1 A-ATTTTTATAATTTTCTTAC
* *
95233769 AACTTTATAAAATTTT
1 AA-TTTTTATAATTTT
95233785 ATAATTTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
18 3 0.07
19 5 0.11
20 7 0.16
21 25 0.57
22 4 0.09
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (20 bp):
AATTTTTATAATTTTCTTAC
Found at i:95233804 original size:19 final size:20
Alignment explanation
Indices: 95233780--95233831 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
95233770 ACTTTATAAA
*
95233780 ATTTTATAATTTTTT-CTAT
1 ATTTTATAATTTTTTACGAT
*
95233799 ATTTTATTATTTTTTACGAT
1 ATTTTATAATTTTTTACGAT
*
95233819 -TTTTATGATTTTT
1 ATTTTATAATTTTT
95233832 AATAAGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 26 0.90
20 3 0.10
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.69
Consensus pattern (20 bp):
ATTTTATAATTTTTTACGAT
Found at i:95233841 original size:20 final size:19
Alignment explanation
Indices: 95233817--95233891 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 19
95233807 ATTTTTTACG
95233817 ATTTTTATGATTTTTAATA
1 ATTTTTATGATTTTTAATA
95233836 AGTTTTTAAT-ATTTTTAAT-
1 A-TTTTT-ATGATTTTTAATA
* *
95233855 ATTTTTATTATAATTTAATA
1 ATTTTTATGAT-TTTTAATA
95233875 ATTTTTATTGATTTTTA
1 ATTTTTA-TGATTTTTA
95233892 TTTTTTATCA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
17 2 0.04
18 7 0.15
19 8 0.17
20 25 0.53
21 5 0.11
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (19 bp):
ATTTTTATGATTTTTAATA
Found at i:95233859 original size:8 final size:9
Alignment explanation
Indices: 95233817--95233891 Score: 62
Period size: 9 Copynumber: 7.8 Consensus size: 9
95233807 ATTTTTTACG
95233817 ATTTTT-AT
1 ATTTTTAAT
95233825 GATTTTTAAT
1 -ATTTTTAAT
95233835 AAGTTTTTAAT
1 -A-TTTTTAAT
95233846 ATTTTTAAT
1 ATTTTTAAT
*
95233855 ATTTTTATT
1 ATTTTTAAT
*
95233864 ATAATTTAAT
1 AT-TTTTAAT
*
95233874 AATTTTTATT
1 -ATTTTTAAT
95233884 GATTTTTA
1 -ATTTTTA
95233892 TTTTTTATCA
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
9 24 0.44
10 21 0.38
11 10 0.18
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:95234509 original size:24 final size:23
Alignment explanation
Indices: 95234451--95234505 Score: 110
Period size: 23 Copynumber: 2.4 Consensus size: 23
95234441 TAATGATTTT
95234451 TAATTTTTTAAAAATAATTCCTA
1 TAATTTTTTAAAAATAATTCCTA
95234474 TAATTTTTTAAAAATAATTCCTA
1 TAATTTTTTAAAAATAATTCCTA
95234497 TAATTTTTT
1 TAATTTTTT
95234506 TAAATTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (23 bp):
TAATTTTTTAAAAATAATTCCTA
Found at i:95236013 original size:24 final size:25
Alignment explanation
Indices: 95235966--95236013 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
95235956 TTTATGGTAC
**
95235966 ATAAAATATATAAACTTAAATTATA
1 ATAAAATATATAAAAATAAATTATA
*
95235991 ATAAAATAT-TAAAAATAATTTAT
1 ATAAAATATATAAAAATAAATTAT
95236014 TAAGTCATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (25 bp):
ATAAAATATATAAAAATAAATTATA
Found at i:95240235 original size:20 final size:20
Alignment explanation
Indices: 95240210--95240270 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
95240200 GAAAAAACTG
*
95240210 TGTTTATACGGATGAATTAC
1 TGTTTATATGGATGAATTAC
*
95240230 TGTTTATATGGATGAAGTAC
1 TGTTTATATGGATGAATTAC
*
95240250 TGTTTATATGGATGAGTTAC
1 TGTTTATATGGATGAATTAC
95240270 T
1 T
95240271 ATCATCGAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.43
Consensus pattern (20 bp):
TGTTTATATGGATGAATTAC
Found at i:95243265 original size:14 final size:15
Alignment explanation
Indices: 95243236--95243265 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
95243226 CAAAATTAAG
95243236 ACATGATACTTTCAC
1 ACATGATACTTTCAC
95243251 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
95243265 A
1 A
95243266 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:95247549 original size:41 final size:41
Alignment explanation
Indices: 95247417--95247550 Score: 130
Period size: 41 Copynumber: 3.2 Consensus size: 41
95247407 CCGGCATTAC
*
95247417 GCTTACTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAA
1 GCTTGCTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAA
* * * * * *
95247458 CCTTGCTAGACCTTTA-AGTCCGA-AATCATTTCACCGGCATTACA
1 GCTTGCTAG-GC-TCAGAGCCCGATAAT-A-TTCACCAGC-TTAAA
*
95247502 -CCTGCTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAA
1 GCTTGCTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAA
95247542 GCTTGCTAG
1 GCTTGCTAG
95247551 ACCTTTAAGT
Statistics
Matches: 71, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
40 4 0.06
41 27 0.38
42 16 0.23
43 20 0.28
44 4 0.06
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (41 bp):
GCTTGCTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAA
Found at i:95247617 original size:84 final size:84
Alignment explanation
Indices: 95247373--95247606 Score: 380
Period size: 84 Copynumber: 2.8 Consensus size: 84
95247363 CACCGGCAAT
* * *
95247373 AAGCCTGCTAGACCTTTAAGTCTGATATCA-TTCACCGGCATTACGCTTACTAGGCTCAGAGCCC
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
95247437 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTTA
* * * *
95247456 AACCTTGCTAGACCTTTAAGTCCGAAATCATTTCACCGGCATTACACCTGCTAGGCTCAGAGCCC
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
95247521 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTTA
* *
95247540 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTTAAAGCCC
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
95247605 GA
66 GA
95247607 AATTCATCAC
Statistics
Matches: 137, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
83 26 0.19
84 111 0.81
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (84 bp):
AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
GATAATATTCACCAGCTTA
Found at i:95249513 original size:14 final size:15
Alignment explanation
Indices: 95249484--95249513 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
95249474 AAAAATTAAG
95249484 ACATGATACTTTCAC
1 ACATGATACTTTCAC
95249499 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
95249513 A
1 A
95249514 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:95252783 original size:40 final size:40
Alignment explanation
Indices: 95252728--95252908 Score: 260
Period size: 40 Copynumber: 4.5 Consensus size: 40
95252718 CATTTGAATG
95252728 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
95252768 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
95252808 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * *
95252848 A-AGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATA-TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
95252888 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
95252909 AAACTTGGGT
Statistics
Matches: 128, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.10
40 113 0.88
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:95253561 original size:38 final size:38
Alignment explanation
Indices: 95253510--95253587 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
95253500 TGGAAACGAT
95253510 TAGCCATTGGAATGGTTAATCATGATTATACTTTGTGC
1 TAGCCATTGGAATGGTTAATCATGATTATACTTTGTGC
95253548 TAGCCATTGGAATGGTTAATCATGATTATACTTTGTGC
1 TAGCCATTGGAATGGTTAATCATGATTATACTTTGTGC
95253586 TA
1 TA
95253588 TGTATGCAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.40
Consensus pattern (38 bp):
TAGCCATTGGAATGGTTAATCATGATTATACTTTGTGC
Found at i:95256645 original size:26 final size:26
Alignment explanation
Indices: 95256610--95256663 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
95256600 GATTTGAAGA
95256610 AAATGACATGAAAAAAGATATCTCCG
1 AAATGACATGAAAAAAGATATCTCCG
*
95256636 AAATGACATGAAAAAAGATATCTTCG
1 AAATGACATGAAAAAAGATATCTCCG
95256662 AA
1 AA
95256664 TTTGTATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.52, C:0.13, G:0.15, T:0.20
Consensus pattern (26 bp):
AAATGACATGAAAAAAGATATCTCCG
Found at i:95267671 original size:13 final size:13
Alignment explanation
Indices: 95267653--95267679 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
95267643 GTTCGACAGG
95267653 GACACGCCCATGT
1 GACACGCCCATGT
95267666 GACACGCCCATGT
1 GACACGCCCATGT
95267679 G
1 G
95267680 CGATTACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:95274054 original size:45 final size:45
Alignment explanation
Indices: 95273986--95274112 Score: 148
Period size: 45 Copynumber: 2.8 Consensus size: 45
95273976 TAGGATTACG
*
95273986 ATATGTGTTTTCGGGTAAGACCACGTCTGAGACATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGAGACATTGGCATCGAT
* * * ** *
95274031 ATATGTGTTTTCGTGTAATACCACGTTTGGGATGTTGGCATTGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGAGACATTGGCATCGAT
* **
95274076 ATATGTGGTTAT-GTGTAAGACCATATCTGAGACATTG
1 ATATGT-GTTTTCGTGTAAGACCACGTCTGAGACATTG
95274113 TGTAACACCC
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 62 0.94
46 4 0.06
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.36
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGAGACATTGGCATCGAT
Found at i:95275316 original size:29 final size:30
Alignment explanation
Indices: 95275250--95275368 Score: 108
Period size: 29 Copynumber: 4.2 Consensus size: 30
95275240 TACATACATG
* * *
95275250 CATATGGCCCA-CTAGGCCTAATCCA-GTT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* * *
95275278 CAAACGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
*
95275307 CTTATGGCCCA-CTAGGCCCAATTC-TCATT
1 CATATGGCCCATCTAGGCCCAATTCAT-ATT
*
95275336 CATATGGCCCAT-TAGGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
95275365 -ATAT
1 CATAT
95275369 TCATGCTCAG
Statistics
Matches: 73, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
28 24 0.33
29 48 0.66
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:95275362 original size:58 final size:57
Alignment explanation
Indices: 95275252--95275364 Score: 140
Period size: 58 Copynumber: 2.0 Consensus size: 57
95275242 CATACATGCA
* **
95275252 TATGGCCCACTAGGCCTAATCCAGTTCAAACGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCCAGTTCAAACGGCCCATCTGGCCCAAATCATATTCT
* *
95275309 TATGGCCCACTAGGCCCAATTCTCA-TTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TC-CAGTTCAAACGGCCCATCT-GGCCCAAATCATATT
95275365 ATATTCATGC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
57 19 0.40
58 27 0.56
59 2 0.04
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCCAGTTCAAACGGCCCATCTGGCCCAAATCATATTCT
Found at i:95279144 original size:42 final size:42
Alignment explanation
Indices: 95279072--95279152 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
95279062 TATTTTGTCC
* * *
95279072 ACACGGGCAGACACACGGGCGTGTGTTTAGACCTTGTGTGAT
1 ACACGGGCAGACACAAGGGCATGTGTTTAGACCATGTGTGAT
* *
95279114 ACACGGTCAGATACAAGGGCATGTAG-TTAGACCATGTGT
1 ACACGGGCAGACACAAGGGCATGT-GTTTAGACCATGTGT
95279153 CCTCTGCACC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 32 0.97
43 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (42 bp):
ACACGGGCAGACACAAGGGCATGTGTTTAGACCATGTGTGAT
Found at i:95283175 original size:154 final size:154
Alignment explanation
Indices: 95282895--95283195 Score: 449
Period size: 154 Copynumber: 2.0 Consensus size: 154
95282885 AGTTTTCTTA
* * * * * *
95282895 AGGAAATTACATGAATGACTTCAAATCTCAAAGTAAAGAAGTAGTCAAATAACTTTCAGGAAATA
1 AGGAAATTACATGAATAACTTCAAACCTCAAAGTAAAAAAGTAATCAAAGAACTTTCAAGAAATA
* * *
95282960 TATAAAACCCTACGAAAATGCTTCTAAAACCAACTCCTAATAGTAGACCTGCAAATGATCAGTAG
66 TATAAAACCCTACGAAAATGCTTCTAAAACCAACTCCTAATAGTAGACCTACAAATGATCAGCAA
95283025 CGTAGGGTGCTTTGTCAAACTAGG
131 CGTAGGGTGCTTTGTCAAACTAGG
*** * *
95283049 AGGAAATTACATGAATAACTTCAAACCTTGGAGTAAAAAAGTAATCGAGGAACTTTCAAGAAATA
1 AGGAAATTACATGAATAACTTCAAACCTCAAAGTAAAAAAGTAATCAAAGAACTTTCAAGAAATA
* *
95283114 TATAAAACCCTACGAAAATGGTTCTAGAACCAACTCCTAATAGTAGACCTACAAATGATCAGCAA
66 TATAAAACCCTACGAAAATGCTTCTAAAACCAACTCCTAATAGTAGACCTACAAATGATCAGCAA
*
95283179 CGTAGGGTGTTTTGTCA
131 CGTAGGGTGCTTTGTCA
95283196 TAATGAGAGG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
154 130 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (154 bp):
AGGAAATTACATGAATAACTTCAAACCTCAAAGTAAAAAAGTAATCAAAGAACTTTCAAGAAATA
TATAAAACCCTACGAAAATGCTTCTAAAACCAACTCCTAATAGTAGACCTACAAATGATCAGCAA
CGTAGGGTGCTTTGTCAAACTAGG
Found at i:95286048 original size:33 final size:33
Alignment explanation
Indices: 95286004--95286069 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
95285994 AAATATTAAG
95286004 TATAGACTGAGATATTCCAATTTTAAGTTTTCT
1 TATAGACTGAGATATTCCAATTTTAAGTTTTCT
*
95286037 TATAGATTGAGATATTCCAATTTTAAGTTTTCT
1 TATAGACTGAGATATTCCAATTTTAAGTTTTCT
95286070 ATGTTGAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (33 bp):
TATAGACTGAGATATTCCAATTTTAAGTTTTCT
Found at i:95286940 original size:23 final size:23
Alignment explanation
Indices: 95286915--95287017 Score: 120
Period size: 23 Copynumber: 4.5 Consensus size: 23
95286905 GTGTTAAAAG
*
95286915 TTAATGTGATTTATACTGAAA-A
1 TTAATGTGATTTATACTTAAATA
* *
95286937 GTTAATGTGCTTTATGCTTAAATA
1 -TTAATGTGATTTATACTTAAATA
*
95286961 TTAAT-TGGATTTATTCTTAAATA
1 TTAATGT-GATTTATACTTAAATA
*
95286984 TTAATGTGATTTATTCTTAAATA
1 TTAATGTGATTTATACTTAAATA
*
95287007 TTAAAGTGATT
1 TTAATGTGATT
95287018 AATGTGTAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
22 1 0.01
23 68 0.96
24 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.48
Consensus pattern (23 bp):
TTAATGTGATTTATACTTAAATA
Found at i:95287027 original size:23 final size:23
Alignment explanation
Indices: 95286955--95287028 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
95286945 GCTTTATGCT
* * *
95286955 TAAATATT-AATTGGATTTATTCT
1 TAAATATTAAAGT-GATTAATTCG
* * *
95286978 TAAATATTAATGTGATTTATTCT
1 TAAATATTAAAGTGATTAATTCG
95287001 TAAATATTAAAGTGATTAATGT-G
1 TAAATATTAAAGTGATTAAT-TCG
95287024 TAAAT
1 TAAAT
95287029 GGACCCTTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
23 41 0.93
24 3 0.07
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (23 bp):
TAAATATTAAAGTGATTAATTCG
Found at i:95287028 original size:46 final size:46
Alignment explanation
Indices: 95286938--95287028 Score: 105
Period size: 46 Copynumber: 2.0 Consensus size: 46
95286928 TACTGAAAAG
* * * *
95286938 TTAATGTGCTTTATGCTTAAATATTAATTGGATTTATTCTTAAATA
1 TTAATGTGATTTATGCTTAAATATTAAGTGGATTAATTCGTAAATA
*
95286984 TTAATGTGATTTATTCTTAAATATTAAAGT-GATTAATGT-GTAAAT
1 TTAATGTGATTTATGCTTAAATATT-AAGTGGATTAAT-TCGTAAAT
95287029 GGACCCTTGA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
46 34 0.89
47 4 0.11
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.48
Consensus pattern (46 bp):
TTAATGTGATTTATGCTTAAATATTAAGTGGATTAATTCGTAAATA
Found at i:95289380 original size:40 final size:40
Alignment explanation
Indices: 95289310--95289494 Score: 243
Period size: 40 Copynumber: 4.6 Consensus size: 40
95289300 GGGCTAAGTC
* * *
95289310 CCGAAGGC-TTTGTGCTAAGTGACTATATCTGGACTAAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTAAATCTGGACTAAGAT
*
95289350 CCGAAGGCATTTGTGCGAGTTACTAAATCTGAACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGACTAAGAT
*
95289390 CCGAAGGCATTTGTGGGAGTTACTAAAT-TCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCT-GGACTAAGAT
*
95289430 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGA-TAAG-T
1 CCGAAGGCATTTGTGCGAGTTACTAAAT-CTGGACTAAGAT
*
95289469 CCCGAAGGCATTTGTGCGAGCTACTA
1 -CCGAAGGCATTTGTGCGAGTTACTA
95289495 TAACCGGGCT
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
39 2 0.02
40 119 0.91
41 10 0.08
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCTGGACTAAGAT
Found at i:95295679 original size:40 final size:40
Alignment explanation
Indices: 95295571--95295780 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
95295561 CGGGATTTAA
* * * * *
95295571 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
95295611 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
95295651 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
95295691 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
95295731 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
95295771 CCGGATATAT
1 CCGGATATAT
95295781 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:95302666 original size:23 final size:24
Alignment explanation
Indices: 95302628--95302672 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
95302618 TTTGCTCTTC
*
95302628 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
95302652 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
95302673 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:95302864 original size:53 final size:54
Alignment explanation
Indices: 95302734--95302988 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 54
95302724 TAAGGATATC
* * * * *
95302734 CTTACCATTGGCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
95302783 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * **
95302836 CTAACCAATGCCATGCCTTGGCACGGTCTTACATGGGA-CCTTTGCCTTATAGTGA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * *
95302891 CTTATCAATGCCATGTCTTGACATGGTATTTCATGATATCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
95302944 CCTTACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
95302989 AAACCCTAAT
Statistics
Matches: 166, Mismatches: 29, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 47 0.28
54 10 0.06
55 67 0.40
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:95302934 original size:108 final size:110
Alignment explanation
Indices: 95302782--95302981 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
95302772 TCCTTTTGAA
* * *
95302782 ACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTAACCAA-
1 ACTTACCAATGCCATGTCTTGACATGGTATTACATGATATCCTTGCCTTA-GAAACCTAACCAAT
95302844 TGCCATGCCTTGGCACGGTCTTACATGGGACCTTTGCCTTATAGTG
65 TGCCATGCCTTGGCACGGTCTTACATGGGACCTTTGCCTTATAGTG
* * *
95302890 ACTTATCAATGCCATGTCTTGACATGGTATTTCATGATATCCTTGCCTTAGAAACCTTACCAATT
1 ACTTACCAATGCCATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAAACCTAACCAATT
* *
95302955 GTCATGCCTTGGCATGGTCTTACATGG
66 GCCATGCCTTGGCACGGTCTTACATGG
95302982 TATCCTTAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.58
109 7 0.09
110 26 0.32
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (110 bp):
ACTTACCAATGCCATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAAACCTAACCAATT
GCCATGCCTTGGCACGGTCTTACATGGGACCTTTGCCTTATAGTG
Found at i:95310001 original size:20 final size:20
Alignment explanation
Indices: 95309963--95310017 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
95309953 TTTTGATATG
*
95309963 TTAAAATGATTTT-AGCTTGA
1 TTAAAATAATTTTCA-CTTGA
* * *
95309983 TTGAAATCATTTTCACTTGG
1 TTAAAATAATTTTCACTTGA
95310003 TTAAAATAATTTTCA
1 TTAAAATAATTTTCA
95310018 TTTTATTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.45
Consensus pattern (20 bp):
TTAAAATAATTTTCACTTGA
Found at i:95316599 original size:16 final size:16
Alignment explanation
Indices: 95316578--95316609 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
95316568 GTCCTTTTCA
95316578 ATTCTAAGCTTAAAAT
1 ATTCTAAGCTTAAAAT
95316594 ATTCTAAGCTTAAAAT
1 ATTCTAAGCTTAAAAT
95316610 CTAACAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTCTAAGCTTAAAAT
Found at i:95318562 original size:2 final size:2
Alignment explanation
Indices: 95318555--95318589 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
95318545 AATCCTGTTG
95318555 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95318590 GTATGTGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:95320913 original size:48 final size:44
Alignment explanation
Indices: 95320861--95321167 Score: 158
Period size: 47 Copynumber: 6.5 Consensus size: 44
95320851 AGGACCAGGT
95320861 TAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGCCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGCATCCAGA-GAGGCC-AGTG
* * * *
95320909 TAAGACATGTTTGGGACATGCATCAGCCATACTATGATA-GCCAGTG
1 TAAGACATGTCTGGGACATGCATC-GGCAT-CCA-GAGAGGCCAGTG
* *
95320955 TAAGACCATGTCTGGGATATGGCATCGGCA-CAGAGATGAGTGCCAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGCATC-CAGA-GAG-GCCAGTG
* * * *
95321003 TAAGACATGTCTGGGATATGCATCGGCCTCGACAAAGATAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATC--CAGAGA-GGCCAGTG
* ** * * * *
95321050 TAATATGTGCCTAGGACATGCATCGGC-T--AGGAGTTGTGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATCCA-GAG-AG-GCCAGTG
* ** *
95321094 TAAGACATGTCTAGGACATGCATCAACATGC-GTATTTGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATCCAG-A---GAG-GCCAGTG
95321142 TAAGACCATGTCTGGGACATGGCATC
1 TAAGA-CATGTCTGGGACAT-GCATC
95321168 AGCAATATAT
Statistics
Matches: 202, Mismatches: 33, Indels: 46
0.72 0.12 0.16
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 27 0.13
45 5 0.02
46 26 0.13
47 80 0.40
48 40 0.20
49 16 0.08
50 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCGGCATCCAGAGAGGCCAGTG
Found at i:95320977 original size:94 final size:93
Alignment explanation
Indices: 95320861--95321167 Score: 292
Period size: 94 Copynumber: 3.3 Consensus size: 93
95320851 AGGACCAGGT
*
95320861 TAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAG-GCCTAGTGTAAGACATGTTTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCAT-CAGA-GAGTGCCTAGTGTAAGACATGTCTGGGA
95320925 CATGCATCAGCCATACTATGATAGCCAGTG
64 CATGCATCAGCCATACTATGATAGCCAGTG
*
95320955 TAAGACCATGTCTGGGATATGGCATCGGCA-CAGAGATGAGTGCC-AGTGTAAGACATGTCTGGG
1 TAAGACCATGTCTGGGACATGGCATCGGCATC--AGA-GAGTGCCTAGTGTAAGACATGTCTGGG
* * * *
95321018 ATATGCATCGGCC-TCGACAAAGATAGCCAGTG
63 ACATGCATCAGCCAT--ACTATGATAGCCAGTG
* ** * * * *
95321050 TAATA-TGTGCCTAGGACAT-GCATCGGC-T-AG-GAGTTGTGCTAGTGTAAGACATGTCTAGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCATCAGAGAG-TG-CCTAGTGTAAGACATGTCTGGGA
* * *
95321110 CATGCATCA-ACATGCGTATTTGAGAGCCAGTG
64 CATGCATCAGCCATAC-TA--TGATAGCCAGTG
95321142 TAAGACCATGTCTGGGACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
95321168 AGCAATATAT
Statistics
Matches: 171, Mismatches: 27, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
88 3 0.02
89 3 0.02
90 5 0.03
91 27 0.16
92 15 0.09
93 19 0.11
94 78 0.46
95 21 0.12
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCAGAGAGTGCCTAGTGTAAGACATGTCTGGGACA
TGCATCAGCCATACTATGATAGCCAGTG
Found at i:95328595 original size:94 final size:94
Alignment explanation
Indices: 95328464--95328795 Score: 258
Period size: 94 Copynumber: 3.5 Consensus size: 94
95328454 CATGCTTCGA
* *
95328464 CCACATTATGAGAGCCATGGTAAGACCATGTCTGGGACATGGCATCGGTATCCAG-G-CGAGGGC
1 CCACACTATGAGAGCCATGGTAAGACCATGTCTGGGACATGGCATCGGCA--CAGAGACGAGGGC
95328527 TAGTGTAAGACATGTCGGGGACATGCACCAG
64 TAGTGTAAGACATGTCGGGGACATGCACCAG
* * * *
95328558 CCACACTATGATAGCCAAT-GTAAGACCATGTCTGGGACATGGCATTGGCACAGAGATGAGTGCT
1 CCACACTATGAGAGCC-ATGGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGACGAGGGCT
* * *
95328622 AGTGTAAGACATGTCTGGGACATGCATTCGG
65 AGTGTAAGACATGTCGGGGACATGCA-CCAG
* * * * * **
95328653 CCTCGA--AAGAGATAGCCA-GTGTAAGA-CGTGTCTAGGACA-CGCATCGGCTA-AGAG--TTG
1 CCAC-ACTATGAG--AGCCATG-GTAAGACCATGTCTGGGACATGGCATCGGC-ACAGAGACGAG
* ** **
95328710 TGCTAGTGTAAGACATGTCTAGGACATGCATTAG
61 GGCTAGTGTAAGACATGTCGGGGACATGCACCAG
*
95328744 -CATACGTATATGAGAGCCA-GTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 CCACAC---TATGAGAGCCATG-GTAAGACCATGTCTGGGACATGGCATCGGCA
95328796 ATATATCCCA
Statistics
Matches: 194, Mismatches: 27, Indels: 35
0.76 0.11 0.14
Matches are distributed among these distances:
89 1 0.01
90 1 0.01
91 2 0.01
92 46 0.24
93 13 0.07
94 100 0.52
95 20 0.10
96 11 0.06
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (94 bp):
CCACACTATGAGAGCCATGGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGACGAGGGCTA
GTGTAAGACATGTCGGGGACATGCACCAG
Found at i:95328675 original size:48 final size:47
Alignment explanation
Indices: 95328528--95328794 Score: 151
Period size: 48 Copynumber: 5.7 Consensus size: 47
95328518 GGCGAGGGCT
* * * * * *
95328528 AGTGTAAGACATGTCGGGGACATGCA-CCAGCCACACTA-TGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTCGGCCTCA-AAGAGATAGCC
* * * *
95328574 AATGTAAGACCATGTCTGGGACATGGCATT-GG-CACAGAGATGAGT-GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTCGGCCTCAAAGA-GA-TAGCC
95328622 AGTGTAAGACATGTCTGGGACATGCATTCGGCCTCGAAAGAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTCGGCCTC-AAAGAGATAGCC
* * * * * *
95328670 AGTGTAAGACGTGTCTAGGACACGCA-TCGG-CT--AAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATTCGGCCTCAAAGAGAT-AGCC
* * * ** * *
95328714 AGTGTAAGACATGTCTAGGACATGCATT-AGCATACGTATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTCGGCCT-CAAAGA-GATAGCC
95328762 AGTGTAAGACCATGTCTGGGACATGGCA-TCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTCGGC
95328795 AATATATCCC
Statistics
Matches: 172, Mismatches: 29, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
43 6 0.03
44 27 0.16
45 2 0.01
46 16 0.09
47 38 0.22
48 58 0.34
49 20 0.12
50 5 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATTCGGCCTCAAAGAGATAGCC
Found at i:95328762 original size:92 final size:93
Alignment explanation
Indices: 95328570--95328794 Score: 244
Period size: 92 Copynumber: 2.4 Consensus size: 93
95328560 ACACTATGAT
* * * * *
95328570 AGCCAATGTAAGACCATGTCTGGGACATGGCATTGGC-ACAGAGATGAGTGCTAGTGTAAGACAT
1 AGCCAGTGTAAGACCATGTCTAGGACATCGCATCGGCTA-AGAG-T-TGTGCTAGTGTAAGACAT
* * *
95328634 GTCTGGGACATGCATTCGGCCTCGAAAGAGA
63 GTCTAGGACATGCATTCAGCATCGAAAGAGA
*
95328665 TAGCCAGTGTAAGA-CGTGTCTAGGACA-CGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATGT
1 -AGCCAGTGTAAGACCATGTCTAGGACATCGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATGT
*
95328728 CTAGGACATGCATT-AGCATACGTATATGAG-
65 CTAGGACATGCATTCAGCAT-CG-A-AAGAGA
* *
95328758 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTAGGACATCGCATCGGC
95328795 AATATATCCC
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
91 3 0.03
92 47 0.43
93 13 0.12
94 23 0.21
95 12 0.11
96 12 0.11
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATGTCTAGGACATCGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTC
TAGGACATGCATTCAGCATCGAAAGAGA
Found at i:95331688 original size:23 final size:23
Alignment explanation
Indices: 95331642--95331718 Score: 129
Period size: 23 Copynumber: 3.4 Consensus size: 23
95331632 GTTCTAGGGT
* *
95331642 CACACGGGCGTGTCC-CTTGGAC
1 CACACGGGCATGTCCTTTTGGAC
95331664 CACACGGGCATGTCCTTTTGGAC
1 CACACGGGCATGTCCTTTTGGAC
95331687 CACACGGGCATGTCCTTTTGGAC
1 CACACGGGCATGTCCTTTTGGAC
95331710 CACACGGGC
1 CACACGGGC
95331719 GTGTGAGCCC
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
22 14 0.27
23 38 0.73
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.21
Consensus pattern (23 bp):
CACACGGGCATGTCCTTTTGGAC
Found at i:95334186 original size:83 final size:83
Alignment explanation
Indices: 95334092--95334257 Score: 305
Period size: 83 Copynumber: 2.0 Consensus size: 83
95334082 ATTTTTAAGT
*
95334092 AAGGGGCATTTTGGTAATCTAATAATTAAATAAATTAAAAATCCAAAATAAGCCAAATTGTCCAT
1 AAGGGGCATTTTGGTAATCTAATAATTAAATAAATTAAAAAGCCAAAATAAGCCAAATTGTCCAT
95334157 CTTCTTGTTCTAGCCGAA
66 CTTCTTGTTCTAGCCGAA
* *
95334175 AAGGGGCATTTTGGTAATCTAATAATTAAATGAATTAAAAAGCCAAAATAAGTCAAATTGTCCAT
1 AAGGGGCATTTTGGTAATCTAATAATTAAATAAATTAAAAAGCCAAAATAAGCCAAATTGTCCAT
95334240 CTTCTTGTTCTAGCCGAA
66 CTTCTTGTTCTAGCCGAA
95334258 TCTACCATGG
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 80 1.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.31
Consensus pattern (83 bp):
AAGGGGCATTTTGGTAATCTAATAATTAAATAAATTAAAAAGCCAAAATAAGCCAAATTGTCCAT
CTTCTTGTTCTAGCCGAA
Found at i:95341211 original size:32 final size:32
Alignment explanation
Indices: 95341164--95341245 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 32
95341154 TTGAATTTAG
*
95341164 TTTGTTGGATTTTGAAATTATTATGTCTTCAA-
1 TTTGTTGGATATTGAAATTATTATGT-TTCAAC
* * *
95341196 TTTGTTAGATATTGAATTTATTATGTTTTAAC
1 TTTGTTGGATATTGAAATTATTATGTTTCAAC
*
95341228 CTTGTTGGATATTGAAAT
1 TTTGTTGGATATTGAAAT
95341246 GATTGACAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 4 0.10
32 38 0.90
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.52
Consensus pattern (32 bp):
TTTGTTGGATATTGAAATTATTATGTTTCAAC
Found at i:95342673 original size:19 final size:20
Alignment explanation
Indices: 95342645--95342687 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
95342635 CAAATATCAG
*
95342645 AAAAAGTAAAACATTTTC-A
1 AAAAAATAAAACATTTTCTA
*
95342664 AAAAAATAAATCATTTTCTA
1 AAAAAATAAAACATTTTCTA
95342684 AAAA
1 AAAA
95342688 TTATTTTTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.28
Consensus pattern (20 bp):
AAAAAATAAAACATTTTCTA
Found at i:95347387 original size:16 final size:16
Alignment explanation
Indices: 95347366--95347397 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
95347356 CGAGTTATTT
95347366 GAATGGTAAAATTTAA
1 GAATGGTAAAATTTAA
95347382 GAATGGTAAAATTTAA
1 GAATGGTAAAATTTAA
95347398 CTCAACTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (16 bp):
GAATGGTAAAATTTAA
Found at i:95352137 original size:50 final size:48
Alignment explanation
Indices: 95352062--95352197 Score: 170
Period size: 50 Copynumber: 2.8 Consensus size: 48
95352052 ATGAGGTAAG
* *
95352062 GTGCCGATGTCATGTCCCAGACATGGTCTTACACAAGCTCT-AGTCTATCT
1 GTGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCA-T-AATCT
*
95352112 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGT
1 GTGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCT
* *
95352161 G-GCCGATGCTTATCCCAGACAT-GTCTTACACTAGCTC
1 GTGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTC
95352198 ACAATAACCC
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
46 15 0.19
47 12 0.15
48 7 0.09
49 4 0.05
50 40 0.51
51 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
GTGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCT
Found at i:95359685 original size:50 final size:46
Alignment explanation
Indices: 95359608--95359827 Score: 168
Period size: 50 Copynumber: 4.7 Consensus size: 46
95359598 ATGGGGTAAG
*
95359608 GTGCCGATGTCATGTCCCAGACATGGTCTTACACAAGCTCTAATATAT
1 GTGCCGATG-CATGTCCCAGACATGGTCTTACACAAGCACT-ATATAT
*
95359656 GTGCGCCGATGCCATGTCCCAGACATGGTCTTACACTAA-CAC-ATCT-T
1 GT--GCCGATG-CATGTCCCAGACATGGTCTTACAC-AAGCACTATATAT
* * * *
95359703 GTAGCCGATGCATGT-CCAGACAT-GTCTTACACTAGAACT-TGTCT
1 GT-GCCGATGCATGTCCCAGACATGGTCTTACACAAGCACTATATAT
* * *
95359747 CAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-AT
1 --GTGCCGATG-CATGTCCCAGACATGGTCTTACACAAGCACT-ATATAT
** *
95359796 GTGGTTGATGCTTGTCCCAGACAT-GTCTTACA
1 GT-GCCGATGCATGTCCCAGACATGGTCTTACA
95359828 TTAGCTCACA
Statistics
Matches: 142, Mismatches: 16, Indels: 30
0.76 0.09 0.16
Matches are distributed among these distances:
42 1 0.01
43 13 0.09
44 9 0.06
45 12 0.08
46 21 0.15
47 25 0.18
48 24 0.17
49 1 0.01
50 34 0.24
51 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (46 bp):
GTGCCGATGCATGTCCCAGACATGGTCTTACACAAGCACTATATAT
Found at i:95362430 original size:5 final size:5
Alignment explanation
Indices: 95362420--95362447 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
95362410 CCAGTTTGTG
95362420 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
95362448 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:95364247 original size:34 final size:35
Alignment explanation
Indices: 95364209--95364281 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 35
95364199 ATTGCTACCA
95364209 TAATTTTGT-A-CTATGATAAGATTTTAATAAAATT
1 TAATTTTGTAATCTATGAT-AGATTTTAATAAAATT
95364243 TAATTTTGTAATTGCCTATGATAGATTTTAATAAAATT
1 TAATTTTGTAA-T--CTATGATAGATTTTAATAAAATT
95364281 T
1 T
95364282 GATTCTACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
34 9 0.26
35 1 0.03
38 17 0.50
39 7 0.21
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.48
Consensus pattern (35 bp):
TAATTTTGTAATCTATGATAGATTTTAATAAAATT
Found at i:95364607 original size:2 final size:2
Alignment explanation
Indices: 95364594--95364628 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
95364584 TAGCCAATGA
* *
95364594 AT AT AT AC AT AT AT AT AT AT AT AT GT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95364629 AGAGCACAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:95366078 original size:30 final size:30
Alignment explanation
Indices: 95366043--95366102 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
95366033 CCAGTAAAAT
95366043 GTTTTCCAGAAAATGATTTCTGAAAAATGA
1 GTTTTCCAGAAAATGATTTCTGAAAAATGA
* *
95366073 GTTTTCCAGCAAATGATTTCTGGAAAATGA
1 GTTTTCCAGAAAATGATTTCTGAAAAATGA
95366103 TTTACTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (30 bp):
GTTTTCCAGAAAATGATTTCTGAAAAATGA
Found at i:95366221 original size:20 final size:20
Alignment explanation
Indices: 95366196--95366233 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
95366186 CTGTTTTTAC
95366196 ATATATTAATAAATTTATGT
1 ATATATTAATAAATTTATGT
95366216 ATATATTAATAAATTTAT
1 ATATATTAATAAATTTAT
95366234 ATTTTAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATATATTAATAAATTTATGT
Found at i:95368535 original size:27 final size:27
Alignment explanation
Indices: 95368495--95368619 Score: 126
Period size: 27 Copynumber: 4.6 Consensus size: 27
95368485 ATAAAGTCAA
* ** **
95368495 GGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
**
95368522 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
95368548 AAGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* *
95368576 TGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
95368603 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
95368620 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.02
27 78 0.96
28 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:95368626 original size:27 final size:27
Alignment explanation
Indices: 95368449--95368619 Score: 112
Period size: 27 Copynumber: 6.3 Consensus size: 27
95368439 GGGCATTTCA
* **
95368449 GTAATTTTGTAAACCAATGGTATTTCT-
1 GTAATTTTATAAACCAGGGGTATTT-TG
* * * *
95368476 ATAATTTTTATAAAGTCAAGGGTATTTTT
1 GTAA-TTTTATAAA-CCAGGGGTATTTTG
* **
95368505 GTAATTTTGTAAATTAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* ** * *
95368532 GTAATTTTACAAA-TTGAAGGTATTTCG
1 GTAATTTTATAAACCAG-GGGTATTTTG
* * *
95368559 GTAATTTCACAAACCAGTGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
95368586 ATAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
95368613 GTAATTT
1 GTAATTT
95368620 GGTAAACTAA
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
26 2 0.02
27 83 0.72
28 18 0.16
29 13 0.11
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (27 bp):
GTAATTTTATAAACCAGGGGTATTTTG
Found at i:95386823 original size:30 final size:29
Alignment explanation
Indices: 95386780--95386843 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
95386770 CAAGTAGCTG
95386780 AAGCTAGTTAAATCACACACTTAGTGCCA
1 AAGCTAGTTAAATCACACACTTAGTGCCA
* *
95386809 GAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCACACACTTAGTGCCA
95386839 AAGCT
1 AAGCT
95386844 TCCGATTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 6 0.19
30 25 0.81
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCACACACTTAGTGCCA
Found at i:95392558 original size:52 final size:55
Alignment explanation
Indices: 95392430--95392563 Score: 148
Period size: 52 Copynumber: 2.5 Consensus size: 55
95392420 AGGAAATCAT
* * *
95392430 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGACAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATGATAAACTACTATAAGACAAAGATACCAC
* * * * * * * *
95392485 GTAAGACCATGCCAAGGCATGGCAATGGT-GAGTTC-ATATG-CAAGGATACCAC
1 GTAAGACCATGTCAAGACATGGCAATGATAAACTACTATAAGACAAAGATACCAC
95392537 GTAAGACCATGTCAAGACATGGCAATG
1 GTAAGACCATGTCAAGACATGGCAATG
95392564 CTAAGTTTAA
Statistics
Matches: 66, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
52 34 0.52
53 4 0.06
54 3 0.05
55 25 0.38
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (55 bp):
GTAAGACCATGTCAAGACATGGCAATGATAAACTACTATAAGACAAAGATACCAC
Found at i:95397737 original size:30 final size:30
Alignment explanation
Indices: 95397703--95397763 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
95397693 ACCTTAACTC
95397703 AAAC-TTTGACAAAATTACAATTTTGCCCCT
1 AAACTTTTG-CAAAATTACAATTTTGCCCCT
* * *
95397733 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
95397763 A
1 A
95397764 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:95408062 original size:27 final size:27
Alignment explanation
Indices: 95407928--95408071 Score: 150
Period size: 27 Copynumber: 5.3 Consensus size: 27
95407918 AGACCCCAAT
*
95407928 TTGTAAAATTACCAAAATACCCCCG-A
1 TTGTAAAATTACCAAAATACCCCTGTA
* *
95407954 TTCGTAAAATTATCGAAATACCCCTAG-A
1 TT-GTAAAATTACCAAAATACCCCT-GTA
* *
95407982 TTGTAAAATTATCAAAATACCCTTGGT-
1 TTGTAAAATTACCAAAATACCCCT-GTA
* *
95408009 TTGTAAAATTACCAAAATGCCCTTGTA
1 TTGTAAAATTACCAAAATACCCCTGTA
*
95408036 GTGTAAAATTACCAAAATACCCCTGTA
1 TTGTAAAATTACCAAAATACCCCTGTA
**
95408063 GGGTAAAAT
1 TTGTAAAAT
95408072 GACTATTTTG
Statistics
Matches: 102, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
26 4 0.04
27 94 0.92
28 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGTA
Found at i:95408383 original size:50 final size:50
Alignment explanation
Indices: 95408315--95408423 Score: 182
Period size: 50 Copynumber: 2.2 Consensus size: 50
95408305 GTTCTGATAG
* *
95408315 GGTCGCACGGGTCGCACGAGACGACTGTGGATCCAGTATTGATCTGTTAA
1 GGTCGCACAGGTCGCACGAGACGACTATGGATCCAGTATTGATCTGTTAA
* *
95408365 GGTCGCACAGGTCGCACGAGATGACTATGGATCCAGTATTGATTTGTTAA
1 GGTCGCACAGGTCGCACGAGACGACTATGGATCCAGTATTGATCTGTTAA
95408415 GGTCGCACA
1 GGTCGCACA
95408424 AGACGACTGT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (50 bp):
GGTCGCACAGGTCGCACGAGACGACTATGGATCCAGTATTGATCTGTTAA
Found at i:95410957 original size:6 final size:6
Alignment explanation
Indices: 95410946--95410983 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
95410936 GTTTTATTCA
* *
95410946 TTTTAT TTTTAT TTTTAT TTTCAT GTTTA- TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
95410984 GAACTTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:95411004 original size:29 final size:29
Alignment explanation
Indices: 95410939--95411004 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
95410929 TCCATTTGTT
* ** *
95410939 TTATTCATTTTATTTTTATTTTTATTTTCA
1 TTATT-ATTTTATTTTGAACTTTATTTTAA
95410969 TGT-TTATTTTATTTTGAACTTTATTTTAA
1 T-TATTATTTTATTTTGAACTTTATTTTAA
95410998 TTATTAT
1 TTATTAT
95411005 GGTTGTTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
28 1 0.03
29 25 0.83
30 3 0.10
31 1 0.03
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (29 bp):
TTATTATTTTATTTTGAACTTTATTTTAA
Found at i:95412817 original size:19 final size:20
Alignment explanation
Indices: 95412773--95412817 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
95412763 TCCCTTGTAA
*
95412773 TATATATATATTAGAACTTG
1 TATATATATATTAGAACTTC
95412793 TA-ATATATATTA-AGA-TTC
1 TATATATATATTAGA-ACTTC
95412811 TATATAT
1 TATATAT
95412818 TTAGGGTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 5 0.23
19 15 0.68
20 2 0.09
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (20 bp):
TATATATATATTAGAACTTC
Found at i:95413162 original size:21 final size:21
Alignment explanation
Indices: 95413051--95413163 Score: 65
Period size: 21 Copynumber: 5.5 Consensus size: 21
95413041 TAGTTTGGGC
*
95413051 TTTATGGTTTAGGATTTA-TG
1 TTTATGGTTTAGGGTTTAGTG
* *
95413071 -GT-TGGTTTAGGG-TTATTG
1 TTTATGGTTTAGGGTTTAGTG
** * **
95413089 TGAATGGTCTTGGGGTTTAAAG
1 TTTATGGT-TTAGGGTTTAGTG
* * *
95413111 TTT-GGGGTTAGGGTTTTTGTG
1 TTTATGGTTTAGGG-TTTAGTG
*
95413132 TTTGTGGTTTAGGGTTTAGTG
1 TTTATGGTTTAGGGTTTAGTG
95413153 TTTATGGTTTA
1 TTTATGGTTTA
95413164 AGGTCTCAGA
Statistics
Matches: 68, Mismatches: 18, Indels: 13
0.69 0.18 0.13
Matches are distributed among these distances:
17 3 0.04
18 11 0.16
19 2 0.03
20 9 0.13
21 30 0.44
22 13 0.19
ACGTcount: A:0.14, C:0.01, G:0.35, T:0.50
Consensus pattern (21 bp):
TTTATGGTTTAGGGTTTAGTG
Found at i:95413238 original size:15 final size:15
Alignment explanation
Indices: 95413218--95413249 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
95413208 TTTGATTTAG
95413218 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
95413233 AAGATAAATATATAT
1 AAGATAAATATAAAT
95413248 AA
1 AA
95413250 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:95416381 original size:105 final size:105
Alignment explanation
Indices: 95416032--95421931 Score: 6648
Period size: 105 Copynumber: 56.4 Consensus size: 105
95416022 GCCGCTAAAA
* *
95416032 TTTTATTTTA-TTTT-AATTACCTAATTAACTTAAATTGTATTAAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
95416095 TATTTTATTTTATTTTTTTAATCACGAAAAATATTTT-CCGTAC
66 TATTTTATTTTA---ATTTAATCACGAAAAATATTTTGTC-TAC
*
95416138 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTATTTTAAA-A---
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95416199 -ATTTTATTTTAATTTAATCACAAAAAATATTTT-TCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
95416237 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95416302 TATTTTATTTTAATTTAATCACAAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
95416342 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTGAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
95416407 TATTTTATTTTAATTTACTCATGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95416447 TTTTATTTTGTTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTATTTTAAATA-TT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95416511 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTTTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * * *
95416551 TTTTATTTTATTTTTAAATTACGTAATTAAATTCAATTGTAGTTTTAAA-TATTGTTTTAAATAT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTTAAAGTTTTATTTT-AA-A-
** * *
95416615 TTTATTTTATTTTATTTTAATTTAATCAATAAAAATATTTTGACTAT
61 --TATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
95416662 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
95416727 TATTTTA-TTTAATTTAATCACTAAAAATAGTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
** * * * *
95416766 TTTTATTTTATTTTTAAATTAATTAATTAAAGTAGATTGTATTTTGAAA-TATTGTTTTAAATAT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA-TTT-AAAGTTTTATTTTAAATAT
*
95416830 TTTATTTTATATTATTTTAATTTAATCAGGAAAAATATTTTGTCTAC
64 TTTA---T-T-TTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
95416877 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTTTAAA-TATTATTTTAAATAT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTTAAAGTTTTATTTTAAATAT
* *
95416941 TTTATTTTATTTTATTTTAATCACGAAAAATATTTTATCTAC
64 TTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * * *
95416983 TTTTATTTTACTTTAAAATTACCTAATTAAAGTAACTTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATA---
* *
95417048 TATTTCATTTTATTTTAATTTAATCA-AAGAAAATATTTTGTCTAA
63 T-TTT-ATTTTATTTTAATTTAATCACGA-AAAATATTTTGTCTAC
* * *
95417093 TATTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTTAAATTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
95417158 TATTTCATTTTATTTTAATCAC-AAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95417197 TTTTATTTTATTTTTAAATTACCTAATTAAATGAAATT-TGTTTAAAGTTTTATTTTCAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT-AA-A---
* *
95417261 TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTAC
61 TATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
95417306 TTTTATTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95417371 TATTTTATTTTAATTTAATCATGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95417411 TTTTATTTTGTTTTTAAATTACCTAATTAAATTAAATTCTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
95417476 TATTTTA---T--TTTAATCACGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
95417511 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATT-TGTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95417575 TATTTTATTTTATTTTATTTTAATCATGAAAAATATTTTGTCTAC
66 TATTTTATTTTA----A-TTTAATCACGAAAAATATTTTGTCTAC
* * *
95417620 TTTTATTTTATTTTTAAAGTACCTAATTTAATTAAATTGTATTTAATGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * * * *
95417685 TAATTTATTTTAATTTAGTGACTAAAAATATTCTT-TCTCC
66 TATTTTATTTTAATTTAATCACGAAAAATATT-TTGTCTAC
* * * *
95417725 TTTTATTTTATTTTTAAATTACTTAATTAAAGTAAATTATATTTAAAGTTTTGTTTTAAATA-TT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
95417789 TATTTTATTTTAATTTAGTTACGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * * * *
95417829 TTTTAGTTTATTTTCAAATTAGCTAATTAAATTAAATTGTATTTTTAAA-TATTGTTTTAAATAT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTTAAAGTTTTATTTT-AA-A-
* *
95417893 TTTATTTTATTTTATTTTAATTTAATTACGAAAAATATTTTGTCTAT
61 --TATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
95417940 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTTTATTTAAA-TTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * *
95418004 TATTTTATTTTAATTTAATCACTAAAATTATTTTCTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * *
95418044 TTTTATTTTATTTTTAAATTGCCTAATTCAAGTAAATTGTATTTTTAAA-TATTT-TTTTAAATA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTTAAAGT-TTTATTTTAAATA
* * * *
95418107 TTTAATTTTATATTAATTATTTTAATGAAGAAAAATATTTTGTCTAC
63 TTTTA-TTT-TATT--TTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95418154 TTTTATTTTATTTTAAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
95418219 TATTTTAGTTTATTTTAATCACGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * * *
95418259 TTTTATTTTAGTATTAAATTACCTAATTAAATTAAATTGCATTTGAAGTTTTATTTTAAATAATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT--A-AA--
* * *
95418324 TATTTTATTTTATTTTATTTTAATTATTG-AAAATATTTTGTCTAC
61 TATTTTATTTTATTTTAATTTAATCA-CGAAAAATATTTTGTCTAC
** * **
95418369 TTTTATTTTATTTTTAAATTGTCTAATTAAAGTAAATTGTATTTAAAGTTTCGTTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
95418434 TATTTTATTTTATCTTATTTTAATCAGGAAAAATATTTTGTTTAC
66 TATTTTATTTTA----A-TTTAATCACGAAAAATATTTTGTCTAC
* *
95418479 TTTTGTTTT-TTTTTAAATTACCTAATTAAATTAAATTTTATTTTTAAA----TA-TTT---TAT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTTAAAGTTTTATTTTAAATAT
* *
95418535 TTTATTTTATTTTAA--TCA-CGA--AAAATAT-TTTGTCTACT--
64 TTTATTTTATTTTAATTTAATC-ACGAAAA-ATATTT-TGT-CTAC
* * *
95418573 TTTAT-TTTAT-TTT-AAAATTACCTAATTAAAGTAAATTTTATTTAAAGTTTTATTTTAAATAT
1 TTT-TATTT-TATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATA-
* *
95418635 TTTATTTCATTTTATTTTAATTTAATCACGGAAAATATTTTGTCTAT
63 --T-TTT-ATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * * * *
95418682 TTTTATTTTATTTTTAAATTACCTAGTTATATTAAATTGTTTTTTTAAA-TATTGTTTTAAATTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTG--TATTTAAAGTTTTATTTTAAA-TA
95418746 TTTTATTTTATTTTAATTTAATCAC-AGAAAATATTTTGTCTAC
63 TTTTATTTTATTTTAATTTAATCACGA-AAAATATTTTGTCTAC
*
95418789 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATT-TGTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95418853 TATTTTA---T--TTTAATCATGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
95418888 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAGATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
95418953 TATTTTATTTTAATTTAATCACTAAAAATATTTTTTTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATA-TTTTGTCTAC
* * *
95418994 GTTTA--TT-TTTTTAAATTACTTAATTAAAGTAAATTGTATTTAAAGTTTTATTTT--A-A-TT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* ** ** *** *** * * *
95419052 TA-TTCA--CGAA-AAAGATTTTGTCTACT-TTTAT-TTTAT
66 TATTTTATTTTAATTTA-ATCACGAAAAATATTT-TGTCTAC
** ** *
95419088 TTTTAAATTACCTAATTAAA-T---TAA---------ATTGTATTTAAAGTTTTATTTTACATAT
1 TTTTATTTTA--TTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
*
95419140 TTTATTTTATTTTA-----ATCACGGAAAATATTTTGTCTAC
64 TTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
** * * * *
95419177 TTTTATTTTATTTTTAAATTGTCTAACTAAAGTAAATTATATTTAAAGTTTTGTTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT-AA-A---
* *
95419242 TATTTTATTTTATTTTAATTTAATCAGGAAAAATATTTTGTTTAC
61 TATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95419287 -TTT-TGTTCTTTTTAAATTACCTAATTAAATTAAATTGTATTTTTAAA----TA-TTT---TAT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTTAAAGTTTTATTTTAAATAT
* *
95419342 TTTATTTTATTTTAA--TCA-CGA--AAAATAT-TTTGTCTACT--
64 TTTATTTTATTTTAATTTAATC-ACGAAAA-ATATTT-TGT-CTAC
* * *
95419380 TTTAT-TTTAT-TTT-AAAATTACCTAATTAAAGTAAATTTTATTTAAAGTTTTATTTTAAATAT
1 TTT-TATTT-TATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
* * * *
95419442 TTAATTTCACTTTTTTTAATTTAATCACTG-AAAACATTTTGTCTAT
64 TTTA-TT---TTATTTTAATTTAATCAC-GAAAAATATTTTGTCTAC
* * * * *
95419488 TTTTATTTTATTTTTAAATTACCTAGTTAAACTAAATTCATTTTTTAAA-TTTTGTTTTAAATTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATT--GTATTTAAAGTTTTATTTTAAA-TA
95419552 TTTTATTTTATTTTAATTTAATCAC-AGAAAATATTTTGTCTAC
63 TTTTATTTTATTTTAATTTAATCACGA-AAAATATTTTGTCTAC
*
95419595 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATT-TGTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95419659 TATTTTA---T--TTTAATCATGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
95419694 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATT-TGTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95419758 TATTTTA---T--TTTAATCATGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95419793 TTTTATTTTATTTTTATATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAGATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * *
95419858 TATTTTATTTTATTTTAATCAC-TAAAATATTTTTTTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATA-TTTTGTCTAC
* * * *
95419898 GTTTA--TT-TTTTTAAATTACTTAATTAAAGTAAATAGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * *
95419960 TATTTTATTTTAATTTATTCACGAAAAAGATTTTGCCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
95420000 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGCATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT-AA-A--T
* * *
95420065 AATTTTATTTTATTTTATTTTAATCACGGAAAATATTTTGTATAC
62 -ATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
** * *
95420110 TTTTATTTTATTTTTAAATTGTCTAATTAAAGTAAATTGTATTTAAAGTTTTGTTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * *
95420175 TATTTTATTTTATTTTATTTTAATTAGGAAAAATATTTTGTTTAC
66 TATTTTATTTTA----A-TTTAATCACGAAAAATATTTTGTCTAC
* *
95420220 TTTT-GTTT-TTTTTAAATTGCCTAATTAAATTAAATTGTATTTTTAAA----TA-TTT---TAT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTTAAAGTTTTATTTTAAATAT
* *
95420275 TTTATTTTATTTTAA--TCA-CGA--AAAATAT-TTTGTCTACT--
64 TTTATTTTATTTTAATTTAATC-ACGAAAA-ATATTT-TGT-CTAC
* * *
95420313 TTTAT-TTTAT-TTT-AAAATTACCTAATTAAAGTAAATTTTATTTAAAGTTTTATTTTAAATAT
1 TTT-TATTT-TATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATA-
* * *
95420375 TTTATTTCATTTTATTTTAATTTAATCACGGAATATATTTTGTCTAT
63 --T-TTT-ATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * * *
95420422 TTTTATTTTATTTTTAAATTACCTAGTTAAATTAAATTATTATTTTAAA-TATTGTTTTAAAT-T
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATT-GTA-TTTAAAGTTTTATTTTAAATAT
95420485 ATTTATTTTATTTTAATTTAATCAC-AGAAAATATTTTGTCTAC
64 -TTTATTTTATTTTAATTTAATCACGA-AAAATATTTTGTCTAC
* * *
95420528 TTTTATTTTATTTTTAAATTACCAAATTAAATTGAATT-TGTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95420592 TATTTTA---T--TTTAATCATGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95420627 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAATGTTTTATTTTAGATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
95420692 TATTTTATTTTAATTTAATCACTAAAAATATTTTTTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * *
95420732 ATTTA-TTT-TTTTTAAATTACTTAATTAAAGTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * *
95420795 TATTTTATTTTAATTTAGTCAAGAAAAAGATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95420835 TTTTATTTTATTTTTATATTACCTAATTAAATTAAATTATATTTTTAAATATTGTTTTAAATATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTT-AA-A--G-TTT---TATT
** *
95420900 TTATTTTATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
56 TTA-AATATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95420951 TTTTATTTTATTTTGAAATTACCTAATTAAATT-AA----A-TT---G---T-TTTTAAA-GTTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
95421002 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * * *
95421042 TTTTATTTTATTTTTAAATTATCTAAGTAAAGTAAATTGTATTTTTAAA-TATT-TTTTAAATAT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTTAAAGTTTTATTTTAAATAT
* *
95421105 TTTATTTTATTTTATTTTAATCACGAAAAATA-TTTGTTTAC
64 TTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95421146 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTTTATTTTTAAA-TATTT-TTTAAAATA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTTAAAGT-TTTATTTTAAATA
95421209 TTTTATTTTATTTT-ATTTGAATCACGAAAAATATTTTGTCTAC
63 TTTTATTTTATTTTAATTT-AATCACGAAAAATATTTTGTCTAC
95421252 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAA-TTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95421316 TATTTTATTTTAATTTAATCACAAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
95421356 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATA-TT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95421420 TATTTTATTTTATTTTTTTAATCACGAAAAATATTTTGTCTAC
66 TATTTTATTTTA---ATTTAATCACGAAAAATATTTTGTCTAC
*
95421463 TTTTATTTTATTTTTAAATTCCCT-ATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
95421527 TATTTTATTTTAATTTAGTCATGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
95421567 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTTTAAATATTGTTTTAAATATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA--TTT-AA-A--G-TTT---TATT
** * *
95421632 TTATTTTATTTTATTTTATTTTATTTTAATCAGGAAAAATATTTTGTCTAC
56 TTA-AATATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * * *
95421683 TTTTATTTTATTTTCAAATTACCTAATTAAAGTAAATTGTATTTTAAA-TATTGTTTTAAATATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA-TTTAAAGTTTTATTTTAAATATT
* * *
95421747 TTATTTTAATTTAATTTAATCATGAAAAATATTTTGTCCAC
65 TTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
95421788 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAACTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
95421853 TATTTTAATTTAATTTAATCACGAAAAATA--TTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
95421891 TTTTATTTTATTTTTAAATTACTTAATTAAATTAAATTGTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTA
95421932 GTTTTTAATA
Statistics
Matches: 5032, Mismatches: 439, Indels: 649
0.82 0.07 0.11
Matches are distributed among these distances:
86 22 0.00
87 6 0.00
88 8 0.00
89 15 0.00
90 4 0.00
91 77 0.02
92 20 0.00
93 23 0.00
94 110 0.02
95 33 0.01
96 20 0.00
97 27 0.01
98 5 0.00
99 389 0.08
100 211 0.04
101 8 0.00
102 102 0.02
103 248 0.05
104 700 0.14
105 975 0.19
106 312 0.06
107 252 0.05
108 190 0.04
109 249 0.05
110 538 0.11
111 287 0.06
112 25 0.00
113 1 0.00
114 2 0.00
115 20 0.00
116 153 0.03
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.56
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
Found at i:95417152 original size:13 final size:14
Alignment explanation
Indices: 95417129--95417162 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
95417119 TTAAATTAAA
95417129 TTATATTTAAAT-TT
1 TTAT-TTTAAATATT
95417143 TTATTTTAAATATT
1 TTATTTTAAATATT
95417157 TTATTT
1 TTATTT
95417163 CATTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTATTTTAAATATT
Found at i:95417264 original size:5 final size:5
Alignment explanation
Indices: 95417256--95417282 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
95417246 TTATTTTCAA
95417256 TATTT TATTT TATTT TATTT TATTT TA
1 TATTT TATTT TATTT TATTT TATTT TA
95417283 ATCACAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:95417566 original size:5 final size:5
Alignment explanation
Indices: 95417558--95417596 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
95417548 TTGTTTAAAG
**
95417558 TTTTA TTTTA AAT-A TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
95417597 ATCATGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 2 0.07
5 27 0.93
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:95417695 original size:10 final size:10
Alignment explanation
Indices: 95417669--95417701 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
95417659 TATTTAATGT
95417669 TTTATTTTAA
1 TTTATTTTAA
*
95417679 -ATATTTTAA
1 TTTATTTTAA
95417688 TTTATTTTAA
1 TTTATTTTAA
95417698 TTTA
1 TTTA
95417702 GTGACTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTATTTTAA
Found at i:95417987 original size:11 final size:11
Alignment explanation
Indices: 95417971--95418021 Score: 50
Period size: 11 Copynumber: 4.4 Consensus size: 11
95417961 CCTAATTAAA
95417971 TTAAATTTTAT
1 TTAAATTTTAT
95417982 TTAAATTTTATT
1 TTAAATTTTA-T
95417994 TTAAATATTTTAT
1 TT-AA-ATTTTAT
*
95418007 TT-TATTTTAAT
1 TTAAATTTT-AT
95418018 TTAA
1 TTAA
95418022 TCACTAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
10 5 0.15
11 14 0.42
12 3 0.09
13 5 0.15
14 6 0.18
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTAAATTTTAT
Found at i:95418003 original size:25 final size:24
Alignment explanation
Indices: 95417975--95418021 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
95417965 ATTAAATTAA
*
95417975 ATTTTATTTAAATTTTATTTTAAAT
1 ATTTTATTT-AATTTTAATTTAAAT
*
95418000 ATTTTATTTTATTTTAATTTAA
1 ATTTTATTTAATTTTAATTTAA
95418022 TCACTAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (24 bp):
ATTTTATTTAATTTTAATTTAAAT
Found at i:95418005 original size:14 final size:13
Alignment explanation
Indices: 95417973--95418010 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
95417963 TAATTAAATT
95417973 AAATTTTA-TTT-
1 AAATTTTATTTTA
95417984 AAATTTTATTTTA
1 AAATTTTATTTTA
95417997 AATATTTTATTTTA
1 AA-ATTTTATTTTA
95418011 TTTTAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 8 0.33
12 3 0.12
13 2 0.08
14 11 0.46
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
AAATTTTATTTTA
Found at i:95418102 original size:12 final size:12
Alignment explanation
Indices: 95418085--95418109 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
95418075 GTAAATTGTA
95418085 TTTTTAAATATT
1 TTTTTAAATATT
95418097 TTTTTAAATATT
1 TTTTTAAATATT
95418109 T
1 T
95418110 AATTTTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTTAAATATT
Found at i:95418338 original size:14 final size:14
Alignment explanation
Indices: 95418307--95418351 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
95418297 GCATTTGAAG
*
95418307 TTTTATTTTAAATA
1 TTTTATTTTAATTA
* *
95418321 ATTTATTTTATTTTA
1 TTTTATTTTA-ATTA
95418336 TTTTATTTTAATTA
1 TTTTATTTTAATTA
95418350 TT
1 TT
95418352 GAAAATATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTATTTTAATTA
Found at i:95418768 original size:217 final size:203
Alignment explanation
Indices: 95418643--95421928 Score: 3266
Period size: 202 Copynumber: 15.9 Consensus size: 203
95418633 ATTTTATTTC
* * * *
95418643 ATTTTATTTTAATTTAATCACGGAAAATATTTTGTCTATTTTTATTTTATTTTTAAATTACCTAG
1 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
* * *
95418708 TTATATTAAATTGTTTTTTTAAA-TATTGTTTTAAATTATTTTATTTTATTTTAATTTAATCACA
66 TTAAATTAAATTG--TATTTAAAGTATTATTTTAAA-TATTTTATTTTATTTTAATTTAATCACA
* *
95418772 GAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAA-TTTGTTTAAAG
128 -AAAATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATTTTATTTAAAG
95418836 TTTTATTTTAAAT
191 TTTTATTTTAAAT
*
95418849 ATTTTATTTTATTTTAATCATGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
1 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
* *
95418914 TTAAATTAAATTGTATTTAAAGTTTTATTTTAGATATTTTATTTTATTTTAATTTAATCACTAAA
66 TTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTAATTTAATCAC-AAA
* * * *
95418979 AATATTTTTTTCTACGTTTA-TTT-TTTTAAATTACTTAATTAAAGTAAATTGTATTTAAAGTTT
130 AATA-TTTTGTCTACTTTTATTTTATTTTAAATTACCTAATTAAAGTAAATTTTATTTAAAGTTT
95419042 TA-TTT---T
194 TATTTTAAAT
*
95419048 A----A-TTTA---T--TCACGAAAAAGATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
1 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
* * *
95419103 TTAAATTAAATTGTATTTAAAGTTTTATTTTACATATTTTATTTTA---T--TTTAATCACGGAA
66 TTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTAATTTAATCAC-AAA
** * *
95419163 AATATTTTGTCTACTTTTATTTTATTTTTAAATTGTCTAACTAAAGTAAATTATATTTAAAGTTT
130 AATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATTTTATTTAAAGTTT
*
95419228 TGTTTTAAATATTTT
194 TATTTT-AA-A---T
* * * *
95419243 ATTTTATTTTATTTTAATTTAATCAGGAAAAATATTTTGTTTAC-TTT-TGTTCTTTTTAAATTA
1 ATTTTATTTTA---T--TTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTA
*
95419306 CCTAATTAAATT-AA----A-TT---GTA-T-TTTTAAATATTTTATTTTATTTTATTTTAATCA
61 CCTAATTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTAATTTAATCA
95419360 CGAAAAATATTTTGTCTACTTTTATTTTATTTTAAAATTACCTAATTAAAGTAAATTTTATTTAA
126 C-AAAAATATTTTGTCTACTTTTATTTTATTTT-AAATTACCTAATTAAAGTAAATTTTATTTAA
95419425 AGTTTTATTTTAAAT
189 AGTTTTATTTTAAAT
* * *
95419440 ATTTAATTTCACTTTTTTTAATTTAATCACTG-AAAACATTTTGTCTATTTTTATTTTATTTTTA
1 A--T--TTT-A----TTTTATTTTAATCAC-GAAAAATATTTTGTCTACTTTTATTTTATTTTTA
* * * * * *
95419504 AATTACCTAGTTAAACTAAATTCATTTTTTAAA-TTTTGTTTTAAATTATTTTATTTTATTTTAA
56 AATTACCTAATTAAATTAAATT--GTATTTAAAGTATTATTTTAAA-TATTTTATTTTATTTTAA
*
95419568 TTTAATCACAGAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAA-T
118 TTTAATCACA-AAAATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATT
*
95419632 TTGTTTAAAGTTTTATTTTAAAT
181 TTATTTAAAGTTTTATTTTAAAT
*
95419655 ATTTTATTTTATTTTAATCATGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
1 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
* * * *
95419720 TTAAATTAAATT-TGTTTAAAGTTTTATTTTAAATATTTTATTTTATTTTAA--TCAT--GAAAA
66 TTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTAATTTAATCACAAAA
* * *
95419780 ATATTTTGTCTACTTTTATTTTATTTTTATATTACCTAATTAAATTAAATTGTATTTAAAGTTTT
131 ATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATTTTATTTAAAGTTTT
95419845 ATTTTAGATATTTT
195 ATTTTA-A-A---T
* * * *
95419859 ATTTTATTTTATTTTAATCAC-TAAAATATTTTTTTCTACGTTTA--TT-TTTTTAAATTACTTA
1 ATTTTATTTTATTTTAATCACGAAAAATA-TTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
* * * *
95419920 ATTAAAGTAAATAGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTTAATTTATTCACGAA
65 ATTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTAATTTAATCAC-AA
* * * **
95419985 AAAGATTTTGCCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGCATTTAAAGTT
129 AAATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATTTTATTTAAAGTT
95420050 TTATTTTAAATATTTAATTTT
193 TTA-TTT---TA---AA---T
* * **
95420071 ATTTTATTTTATTTTAATCACGGAAAATATTTTGTATACTTTTATTTTATTTTTAAATTGTCTAA
1 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
* * * *
95420136 TTAAAGTAAATTGTATTTAAAGTTTTGTTTTAAATATTTTATTTTATTTTATTTTATTTTAATTA
66 TTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTA----A-TTTAATCA
* * * * * *
95420201 GGAAAAATATTTTGTTTACTTTTGTTTT-TTTTAAATTGCCTAATTAAATTAAATTGTATTTTTA
126 -CAAAAATATTTTGTCTACTTTTATTTTATTTTAAATTACCTAATTAAAGTAAATT-T-TATTTA
95420265 AA----TA-TTT---T
188 AAGTTTTATTTTAAAT
*
95420273 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTAAAATTACCTAA
1 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
* * *
95420338 TTAAAGTAAATTTTATTTAAAGTTTTATTTTAAATATTTTATTTCATTTTATTTTAATTTAATCA
66 TTAAATTAAATTGTATTTAAAGTATTATTTTAAATA---T-TTT-ATTTTATTTTAATTTAATCA
* * * * *
95420403 CGGAATATATTTTGTCTATTTTTATTTTATTTTTAAATTACCTAGTTAAATTAAATTATTATTTT
126 C-AAAAATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATT-TTA-TTT
* *
95420468 AAA-TATTGTTTTAAATTATTT
187 AAAGTTTTATTTT-AA--A--T
* *
95420489 ATTTTATTTTAATTTAATCAC-AGAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCAA
1 ATTTTATTTTATTTTAATCACGA-AAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
* * * * *
95420553 ATTAAATTGAATT-TGTTTAAAGTTTTATTTTAAATATTTTATTTTATTTTAA--TCAT--GAAA
65 ATTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTAATTTAATCACAAA
* * *
95420613 AATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAATGTTT
130 AATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATTTTATTTAAAGTTT
95420678 TATTTTAGATATTTT
194 TATTTTA-A-A---T
* * * * *
95420693 ATTTTATTTTAATTTAATCACTAAAAATATTTTTTCTACATTTA-TTT-TTTTTAAATTACTTAA
1 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
* * * *
95420756 TTAAAGTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTTAATTTAGTCAAGAAA
66 TTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTAATTTAATC-ACAAA
* * * *
95420821 AAGATTTTGTCTACTTTTATTTTATTTTTATATTACCTAATTAAATTAAATTATATTTTTAAATA
130 AATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATT-T-TATTT-AA-A
*
95420886 TTGTTTTAAATATTTTATTTTATTTT
190 --G-TTT---TATTTTA----A--AT
*
95420912 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTGAAATTACCTAA
1 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
*
95420977 TTAAATT-AA----A-TT---G---T-TTTTAAA-GTTTTATTTTATTTTAATTTAATCACGAAA
66 TTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTAATTTAATCAC-AAA
* * *
95421028 AATATTTTGTCTACTTTTATTTTATTTTTAAATTATCTAAGTAAAGTAAATTGTATTTTTAAA-T
130 AATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATT-T-TATTTAAAGT
*
95421092 ATTT-TTTAAATATTTT
192 -TTTATTTTAA-A---T
*
95421108 ATTTTATTTTATTTTAATCACGAAAAATA-TTTGTTTACTTTTATTTTATTTTTAAATTACCTAA
1 ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
*
95421172 TTAAATTAAATTTTATTTTTAAA-TATT-TTTTAAAATATTTTATTTTATTTT-ATTTGAATCAC
66 TTAAATTAAATTGTA--TTTAAAGTATTATTTT-AAATATTTTATTTTATTTTAATTT-AATCAC
* *
95421234 GAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAA
127 -AAAAATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATTTTATTTAAA
95421299 -TTTTATTTTAAAT
190 GTTTTATTTTAAAT
*
95421312 ATTTTATTTTATTTTAATTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTA
1 ATTTTATTTTA---T--TTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTA
* *
95421377 CCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATA-TTTATTTTATTTTATTTTTTTAA
61 CCTAATTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTA---ATTTAA
* * *
95421441 TCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTCCCT-ATTAAATTAAATTGTATT
123 TCAC-AAAAATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATTTTATT
95421505 TAAAGTTTTATTTTAAAT
186 TAAAGTTTTATTTTAAAT
*
95421523 ATTTTATTTTATTTTAATTTAGTCATGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTA
1 ATTTTATTTTATTTT-A---A-TCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTA
*
95421588 CCTAATTAAATTAAATTGTATTTTTAAA-TATTGTTTTAAATATTTTATTTTATTTTATTTTATT
61 CCTAATTAAATTAAATTGTA--TTTAAAGTATTATTTT-AA-A---TATTTTATTTTATTTTA--
*
95421652 TTATTTTAATCAGGAAAAATATTTTGTCTACTTTTATTTTATTTTCAAATTACCTAATTAAAGTA
117 --A-TTTAATCA-CAAAAATATTTTGTCTACTTTTATTTTATTTT-AAATTACCTAATTAAAGTA
* * *
95421717 AATTGTATTTTAAA-TATTGTTTTAAAT
177 AATTTTA-TTTAAAGTTTTATTTTAAAT
* *
95421744 ATTTTATTTTAATTTAATTTAATCATGAAAAATATTTTGTCCACTTTTATTTTATTTTTAAATTA
1 ATTTTATTTT-A--T--TTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTA
* * * *
95421809 CCTAATTAAAGTAAATTGTATTTAAACTTTTATTTTAAATATTTTATTTTAATTTAATTTAATCA
61 CCTAATTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTAATTTAATCA
* *
95421874 CGAAAAATA--TTGTCTACTTTTATTTTATTTTTAAATTACTTAATTAAATTAAATT
126 C-AAAAATATTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAAGTAAATT
95421929 GTAGTTTTTA
Statistics
Matches: 2664, Mismatches: 207, Indels: 416
0.81 0.06 0.13
Matches are distributed among these distances:
183 13 0.00
184 18 0.01
186 37 0.01
187 3 0.00
189 91 0.03
191 1 0.00
193 1 0.00
194 5 0.00
195 43 0.02
196 32 0.01
197 20 0.01
198 56 0.02
199 27 0.01
200 8 0.00
201 60 0.02
202 295 0.11
203 123 0.05
204 189 0.07
205 80 0.03
206 149 0.06
207 165 0.06
208 174 0.07
209 39 0.01
210 199 0.07
211 146 0.05
212 50 0.02
213 17 0.01
214 7 0.00
215 138 0.05
216 146 0.05
217 6 0.00
218 48 0.02
219 57 0.02
220 89 0.03
221 118 0.04
222 9 0.00
224 1 0.00
225 1 0.00
226 3 0.00
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (203 bp):
ATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
TTAAATTAAATTGTATTTAAAGTATTATTTTAAATATTTTATTTTATTTTAATTTAATCACAAAA
ATATTTTGTCTACTTTTATTTTATTTTAAATTACCTAATTAAAGTAAATTTTATTTAAAGTTTTA
TTTTAAAT
Found at i:95419113 original size:86 final size:84
Alignment explanation
Indices: 95418955--95419134 Score: 263
Period size: 86 Copynumber: 2.1 Consensus size: 84
95418945 AGATATTTTA
* * * *
95418955 TTTTATTTTAATTTAATCACTAAAAATATTTTTTTCTACGTTTATTTTTTTAAATTACTTAATTA
1 TTTTATTTTAATTTAATCACGAAAAAGATTTTTGTCTACGTTTATTTTTTTAAATTACCTAATTA
95419020 AAGTAAATTGTATTTAAAG
66 AAGTAAATTGTATTTAAAG
* *
95419039 TTTTATTTTAATTTATTCACGAAAAAGA-TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
1 TTTTATTTTAATTTAATCACGAAAAAGATTTTTGTCTACGTTTA--TT-TTTTTAAATTACCTAA
*
95419103 TTAAATTAAATTGTATTTAAAG
63 TTAAAGTAAATTGTATTTAAAG
95419125 TTTTATTTTA
1 TTTTATTTTA
95419135 CATATTTTAT
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
83 13 0.15
84 25 0.29
85 2 0.02
86 46 0.53
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.54
Consensus pattern (84 bp):
TTTTATTTTAATTTAATCACGAAAAAGATTTTTGTCTACGTTTATTTTTTTAAATTACCTAATTA
AAGTAAATTGTATTTAAAG
Found at i:95419366 original size:92 final size:94
Alignment explanation
Indices: 95419242--95419422 Score: 285
Period size: 92 Copynumber: 1.9 Consensus size: 94
95419232 TTAAATATTT
* * *
95419242 TATTTTATTTTATTTTAATTTAATCAGGAAAAATATTTTGTTTACTTTTGTTCT-TTTT-AAATT
1 TATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTACTTTTATTCTATTTTAAAATT
*
95419305 ACCTAATTAAATTAAATTGTATTTTTAAA
66 ACCTAATTAAAGTAAATTGTATTTTTAAA
* *
95419334 TATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTAAAATT
1 TATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTACTTTTATTCTATTTTAAAATT
*
95419399 ACCTAATTAAAGTAAATTTTATTT
66 ACCTAATTAAAGTAAATTGTATTT
95419423 AAAGTTTTAT
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
92 49 0.61
93 4 0.05
94 27 0.34
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (94 bp):
TATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTACTTTTATTCTATTTTAAAATT
ACCTAATTAAAGTAAATTGTATTTTTAAA
Found at i:95420178 original size:5 final size:5
Alignment explanation
Indices: 95420170--95420196 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
95420160 TTGTTTTAAA
95420170 TATTT TATTT TATTT TATTT TATTT TA
1 TATTT TATTT TATTT TATTT TATTT TA
95420197 ATTAGGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:95420469 original size:13 final size:13
Alignment explanation
Indices: 95420453--95420494 Score: 59
Period size: 12 Copynumber: 3.2 Consensus size: 13
95420443 CCTAGTTAAA
95420453 TTAAATTATTATT
1 TTAAATTATTATT
*
95420466 TTAAA-TATTGTT
1 TTAAATTATTATT
95420478 TTAAATTATTTATT
1 TTAAATTA-TTATT
95420492 TTA
1 TTA
95420495 TTTTAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 11 0.44
13 7 0.28
14 7 0.28
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TTAAATTATTATT
Found at i:95420906 original size:5 final size:5
Alignment explanation
Indices: 95420896--95420927 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
95420886 TTGTTTTAAA
95420896 TATTT TATTT TATTT TATTT TATTT TATTT TA
1 TATTT TATTT TATTT TATTT TATTT TATTT TA
95420928 ATCACGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:95421046 original size:43 final size:43
Alignment explanation
Indices: 95420908--95421055 Score: 149
Period size: 43 Copynumber: 3.3 Consensus size: 43
95420898 TTTTATTTTA
*
95420908 TTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
1 TTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * ** *
95420951 TTTTATTTTATTTTGAAATTACCTAATTA--AATTAAAT-TGTTTTTAAAG
1 TTTTATTTTATTTT--AATT---TAATCACGAA--AAATAT-TTTGTCTAC
95420999 TTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
1 TTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
95421042 TTTTATTTTATTTT
1 TTTTATTTTATTTT
95421056 TAAATTATCT
Statistics
Matches: 83, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
43 42 0.51
44 1 0.01
45 5 0.06
46 6 0.07
47 1 0.01
48 28 0.34
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (43 bp):
TTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
Found at i:95421051 original size:48 final size:48
Alignment explanation
Indices: 95420903--95421055 Score: 135
Period size: 48 Copynumber: 3.3 Consensus size: 48
95420893 AAATATTTTA
*
95420903 TTTTATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
1 TTTTATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
** ** * *
95420951 TTTTATTTTATTTTGAAATT-ACCTAATTA--AATTAA-A--TTGT-T--
1 TTTTATTTTATTTT-ATTTTAATTTAATCACGAA-AAATATTTTGTCTAC
*
95420992 TTTAAAGTTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
1 TTT-TA-TTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
95421042 TTTTATTTTATTTT
1 TTTTATTTTATTTT
95421056 TAAATTATCT
Statistics
Matches: 77, Mismatches: 15, Indels: 26
0.65 0.13 0.22
Matches are distributed among these distances:
41 3 0.04
42 4 0.05
43 16 0.21
44 6 0.08
45 3 0.04
46 3 0.04
47 6 0.08
48 29 0.38
49 4 0.05
50 3 0.04
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.58
Consensus pattern (48 bp):
TTTTATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
Found at i:95421099 original size:11 final size:11
Alignment explanation
Indices: 95421083--95421107 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
95421073 GTAAATTGTA
95421083 TTTTTAAATAT
1 TTTTTAAATAT
95421094 TTTTTAAATAT
1 TTTTTAAATAT
95421105 TTT
1 TTT
95421108 ATTTTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTTAAATAT
Found at i:95421638 original size:5 final size:5
Alignment explanation
Indices: 95421628--95421659 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
95421618 TTGTTTTAAA
95421628 TATTT TATTT TATTT TATTT TATTT TATTT TA
1 TATTT TATTT TATTT TATTT TATTT TATTT TA
95421660 ATCAGGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:95422192 original size:9 final size:9
Alignment explanation
Indices: 95422186--95422304 Score: 100
Period size: 9 Copynumber: 13.0 Consensus size: 9
95422176 ATATCATATC
95422186 TTACATAAT
1 TTACATAAT
95422195 TTACATAAT
1 TTACATAAT
95422204 TTACATAAT
1 TTACATAAT
*
95422213 TTACATAAC
1 TTACATAAT
95422222 TTACATAA-
1 TTACATAAT
95422230 -TACATAAAT
1 TTACAT-AAT
95422239 ATATATCAT-AT
1 -T-TA-CATAAT
95422250 CTTACATAAT
1 -TTACATAAT
* *
95422260 TTACATGAG
1 TTACATAAT
* * * *
95422269 ATAAAGAAC
1 TTACATAAT
95422278 TTACATAAT
1 TTACATAAT
*
95422287 TTACATAAC
1 TTACATAAT
95422296 TTACATAAT
1 TTACATAAT
95422305 ACATAAATAT
Statistics
Matches: 88, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
7 5 0.06
8 2 0.02
9 69 0.78
10 4 0.05
11 3 0.03
12 2 0.02
13 3 0.03
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (9 bp):
TTACATAAT
Found at i:95422282 original size:65 final size:66
Alignment explanation
Indices: 95422166--95422303 Score: 197
Period size: 65 Copynumber: 2.1 Consensus size: 66
95422156 TTTCCTATCA
** * * *
95422166 ACATAAATATATATCATATCTTACATAATTTACATAATTTACATAATTTACATAACTTACATAA-
1 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAAGAACTTACATAACTTACATAAC
95422230 T
66 T
* *
95422231 ACATAAATATATATCATATCTTACATAATTTACATGAGATAAAGAACTTACATAATTTACATAAC
1 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAAGAACTTACATAACTTACATAAC
95422296 TT
66 -T
95422298 ACATAA
1 ACATAA
95422304 TACATAAATA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
65 57 0.89
67 7 0.11
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (66 bp):
ACATAAATATATATCATATCTTACATAATTTACATAAGATAAAGAACTTACATAACTTACATAAC
T
Found at i:95427323 original size:13 final size:14
Alignment explanation
Indices: 95427307--95427335 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
95427297 TTATAAATAT
95427307 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
95427320 TTATAATGGTTTAA
1 TTATAATGGTTTAA
95427334 TT
1 TT
95427336 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:95428304 original size:42 final size:42
Alignment explanation
Indices: 95428181--95428305 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 42
95428171 AGCTAAAAGT
* * * * *
95428181 CATGACTTTTAGTGGCGCTTTTCCCGCAAATACCGTTAAAGGC
1 CATGACTTTTAG-CGCGCTTTTCCCACAAATGCCGCTAAAGCC
* *
95428224 CATGACTTTTAGCGGCGCTTTTCCCCCAAACGCCGCTAAAGCC
1 CATGACTTTTAGC-GCGCTTTTCCCACAAATGCCGCTAAAGCC
* *
95428267 CATGACTTTTAGCGCACTTTTCCCACAAATGCAGCTAAA
1 CATGACTTTTAGCGCGCTTTTCCCACAAATGCCGCTAAA
95428306 AGTCATGATT
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
42 22 0.31
43 49 0.69
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (42 bp):
CATGACTTTTAGCGCGCTTTTCCCACAAATGCCGCTAAAGCC
Found at i:95428313 original size:42 final size:42
Alignment explanation
Indices: 95428171--95428318 Score: 145
Period size: 43 Copynumber: 3.5 Consensus size: 42
95428161 ACAAAAGCGT
* * * *
95428171 AGCTAAAAGTCATGACTTTTAGTGGCGCTTTTCCCGCAAATAC
1 AGCTAAAAGCCATGACTTTTAG-CGCGCTTTTCCCACAAATGC
* * * * *
95428214 CGTTAAAGGCCATGACTTTTAGCGGCGCTTTTCCCCCAAACGC
1 AGCTAAAAGCCATGACTTTTAGC-GCGCTTTTCCCACAAATGC
* *
95428257 CGCT-AAAGCCCATGACTTTTAGCGCACTTTTCCCACAAATGC
1 AGCTAAAAG-CCATGACTTTTAGCGCGCTTTTCCCACAAATGC
* *
95428299 AGCTAAAAGTCATGATTTTT
1 AGCTAAAAGCCATGACTTTT
95428319 TGTGGCATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 31 0.36
43 55 0.64
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (42 bp):
AGCTAAAAGCCATGACTTTTAGCGCGCTTTTCCCACAAATGC
Found at i:95435028 original size:42 final size:42
Alignment explanation
Indices: 95434960--95435056 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
95434950 GTTACACACT
* * ***
95434960 CGTGTGTCAGGCCGTGTACCTCTCGAAGTTGGCCCACATGCC
1 CGTGTGCCAGGCCGTGTACCTCTCGAAATAAACCCACATGCC
*
95435002 CGTGTGCCAGGCCGTGTACC-CTTCGAAATAAACTCACATGCC
1 CGTGTGCCAGGCCGTGTACCTC-TCGAAATAAACCCACATGCC
*
95435044 CGTGTGCTAGGCC
1 CGTGTGCCAGGCC
95435057 ATGTGCTAGG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.02
42 46 0.98
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.23
Consensus pattern (42 bp):
CGTGTGCCAGGCCGTGTACCTCTCGAAATAAACCCACATGCC
Found at i:95435063 original size:12 final size:12
Alignment explanation
Indices: 95435046--95435084 Score: 78
Period size: 12 Copynumber: 3.2 Consensus size: 12
95435036 CACATGCCCG
95435046 TGTGCTAGGCCA
1 TGTGCTAGGCCA
95435058 TGTGCTAGGCCA
1 TGTGCTAGGCCA
95435070 TGTGCTAGGCCA
1 TGTGCTAGGCCA
95435082 TGT
1 TGT
95435085 AACAGCCTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.15, C:0.23, G:0.33, T:0.28
Consensus pattern (12 bp):
TGTGCTAGGCCA
Found at i:95437472 original size:40 final size:40
Alignment explanation
Indices: 95437258--95437455 Score: 278
Period size: 40 Copynumber: 5.0 Consensus size: 40
95437248 TCGAATGATG
* * * *
95437258 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
95437298 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
95437338 TCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
95437378 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
95437418 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
95437456 TAACCGGGCT
Statistics
Matches: 147, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 1 0.01
40 135 0.92
41 11 0.07
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:95437483 original size:40 final size:40
Alignment explanation
Indices: 95437258--95437483 Score: 173
Period size: 40 Copynumber: 5.7 Consensus size: 40
95437248 TCGAATGATG
* * * *
95437258 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATA
1 TCCGGGATAAGTCCCAAAGGCATTTGTGC-GAGCT-ACTAAA
* *
95437298 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCAAAGGCATTTGTGCGAGCTACTAAA
* * *
95437338 TCC-GGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCAAAGGCATTTGTGCGAGCTACTAAA
* *
95437378 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCAAAGGCATTTGTGCGAGCTACTAAA
*
95437418 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGATAAGTCCCAAAGGCATTTGTGCGAGCTACTA-AA
* * *
95437459 -CCGGGCTATGTCCCAAAGGTATTTG
1 TCCGGGATAAGTCCCAAAGGCATTTG
95437484 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 10, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
39 3 0.02
40 152 0.90
41 14 0.08
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGATAAGTCCCAAAGGCATTTGTGCGAGCTACTAAA
Found at i:95437502 original size:120 final size:120
Alignment explanation
Indices: 95437258--95437490 Score: 280
Period size: 120 Copynumber: 1.9 Consensus size: 120
95437248 TCGAATGATG
* *
95437258 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* * *
95437323 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAA
66 GTGCGAGCTACTAAATCCGGACTAAGATCCAAAGGCATTTGAACGAGTTACTAAA
* *
95437378 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGA-TAAG-TCCCGAAGGC
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAATCC-GGACTAAGAT-CCGAAGGC
* * *
95437439 ATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCAAAGGTATTTGAACGAGT
62 ATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCAAAGGCATTTGAACGAGT
95437491 AGCTATATCC
Statistics
Matches: 97, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
119 2 0.02
120 82 0.85
121 13 0.13
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGCTACTAAATCCGGACTAAGATCCAAAGGCATTTGAACGAGTTACTAAA
Found at i:95439654 original size:21 final size:22
Alignment explanation
Indices: 95439603--95439655 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
95439593 TGTAGGGCTC
**
95439603 ACATGCCCGTGTGGTCCAAGTG
1 ACATGCCCGTGTGACCCAAGTG
** *
95439625 ACACACCCGTGTGACCCTAG-G
1 ACATGCCCGTGTGACCCAAGTG
95439646 ACATGCCCGT
1 ACATGCCCGT
95439656 ACTGGAGGCT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.21, C:0.34, G:0.26, T:0.19
Consensus pattern (22 bp):
ACATGCCCGTGTGACCCAAGTG
Found at i:95447787 original size:26 final size:26
Alignment explanation
Indices: 95447730--95447779 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
95447720 CCCGATATAT
*
95447730 GGCTCTTCGTGAGCTTCCCGATTAAA
1 GGCTCTTCGTGAGCTTCCCAATTAAA
* *
95447756 GGCTCTTTGTGAGCTTCCTAATTA
1 GGCTCTTCGTGAGCTTCCCAATTA
95447780 TTAGCTCTCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCAATTAAA
Found at i:95447883 original size:24 final size:24
Alignment explanation
Indices: 95447829--95447883 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
95447819 TTTCCGATAT
* * *
95447829 ATGGCTATTCGGAGCTTCCTGTTA
1 ATGGCTCTTCGGAGCTACCCGTTA
*
95447853 ATCGCTCTTCGGAGCTACCCGTTA
1 ATGGCTCTTCGGAGCTACCCGTTA
*
95447877 TTGGCTC
1 ATGGCTC
95447884 GCAGGAGCTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.15, C:0.27, G:0.24, T:0.35
Consensus pattern (24 bp):
ATGGCTCTTCGGAGCTACCCGTTA
Found at i:95451793 original size:15 final size:15
Alignment explanation
Indices: 95451773--95451841 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
95451763 GTATCTTGGG
95451773 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
95451788 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
95451803 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
95451818 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
95451833 TTTCTTTAT
1 TTTCTTTAT
95451842 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:95451842 original size:30 final size:30
Alignment explanation
Indices: 95451764--95451851 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
95451754 CATAGTATCG
* * * *
95451764 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
95451794 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
95451824 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
95451852 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:95455655 original size:20 final size:20
Alignment explanation
Indices: 95455632--95455733 Score: 64
Period size: 20 Copynumber: 5.2 Consensus size: 20
95455622 AGGGGCATGT
95455632 AAGTGCAATCAGGGGTACCG
1 AAGTGCAATCAGGGGTACCG
** * **
95455652 AAGTATAA-CAGGGGCACAT
1 AAGTGCAATCAGGGGTACCG
* * *
95455671 AAGTGCGATTAGGGGTACCA
1 AAGTGCAATCAGGGGTACCG
* * * *
95455691 AAGTACAAT-AAGGGCACCT
1 AAGTGCAATCAGGGGTACCG
* *
95455710 AAGTGCGATCAGGGGTATCG
1 AAGTGCAATCAGGGGTACCG
95455730 AAGT
1 AAGT
95455734 ACAACTTGGG
Statistics
Matches: 57, Mismatches: 23, Indels: 4
0.68 0.27 0.05
Matches are distributed among these distances:
19 27 0.47
20 30 0.53
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.18
Consensus pattern (20 bp):
AAGTGCAATCAGGGGTACCG
Found at i:95455674 original size:19 final size:19
Alignment explanation
Indices: 95455614--95455674 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
95455604 GGAGTACCGG
**
95455614 AGTATAACAGGGGCATGTA
1 AGTATAACAGGGGCACATA
** * **
95455633 AGTGCAATCAGGGGTACCGA
1 AGTATAA-CAGGGGCACATA
95455653 AGTATAACAGGGGCACATA
1 AGTATAACAGGGGCACATA
95455672 AGT
1 AGT
95455675 GCGATTAGGG
Statistics
Matches: 30, Mismatches: 11, Indels: 2
0.70 0.26 0.05
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.36, C:0.15, G:0.31, T:0.18
Consensus pattern (19 bp):
AGTATAACAGGGGCACATA
Found at i:95455723 original size:19 final size:19
Alignment explanation
Indices: 95455663--95455723 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
95455653 AGTATAACAG
* *
95455663 GGGCACATAAGTGCGATTAG
1 GGGCACCTAAGTGCGA-TAA
* * * *
95455683 GGGTACCAAAGTACAATAA
1 GGGCACCTAAGTGCGATAA
*
95455702 GGGCACCTAAGTGCGATCA
1 GGGCACCTAAGTGCGATAA
95455721 GGG
1 GGG
95455724 GTATCGAAGT
Statistics
Matches: 30, Mismatches: 11, Indels: 1
0.71 0.26 0.02
Matches are distributed among these distances:
19 19 0.63
20 11 0.37
ACGTcount: A:0.33, C:0.18, G:0.33, T:0.16
Consensus pattern (19 bp):
GGGCACCTAAGTGCGATAA
Found at i:95455804 original size:39 final size:39
Alignment explanation
Indices: 95455594--95455792 Score: 227
Period size: 39 Copynumber: 5.1 Consensus size: 39
95455584 GCTATACGAT
* * * * *
95455594 AGTGCTATCAGGAGTACCGGAGTATAACAGGGGCATGTA
1 AGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGTA
* * *
95455633 AGTGCAATCAGGGGTACCGAAGTATAACAGGGGCACATA
1 AGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGTA
* * * * *
95455672 AGTGCGATTAGGGGTACCAAAGTACAATAAGGGCACCTA
1 AGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGTA
* **
95455711 AGTGCGATCAGGGGTATCGAAGTACAACTTGGGCACGTA
1 AGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGTA
* * *
95455750 AATGCGATTAGGGGTACCGAAGCACAACAGGGGCACGTA
1 AGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGTA
95455789 AGTG
1 AGTG
95455793 GAATCAAGGG
Statistics
Matches: 134, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 134 1.00
ACGTcount: A:0.33, C:0.18, G:0.32, T:0.18
Consensus pattern (39 bp):
AGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGTA
Found at i:95464830 original size:80 final size:80
Alignment explanation
Indices: 95464746--95464894 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
95464736 TATGGTAACC
* * * *
95464746 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
95464810 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
95464826 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
95464891 CCGG
66 CCGG
95464895 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:95464836 original size:40 final size:38
Alignment explanation
Indices: 95464787--95464894 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
95464777 ATCACGATTT
*
95464787 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
95464827 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
95464867 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
95464895 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:95472930 original size:80 final size:80
Alignment explanation
Indices: 95472846--95472994 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
95472836 TATGGTAACC
* * * *
95472846 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
95472910 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
95472926 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
95472991 CCGG
66 CCGG
95472995 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:95472936 original size:40 final size:38
Alignment explanation
Indices: 95472887--95472994 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
95472877 ATCACGATTT
*
95472887 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
95472927 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
95472967 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
95472995 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:95477076 original size:43 final size:43
Alignment explanation
Indices: 95476919--95477077 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
95476909 GTTTACCGAG
* * * * **
95476919 ATGTGATTACATGTAAGACAATGTTTGGGACATTAGCAT-TGT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCAAT
**
95476961 ATTGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCAAT
* * * ** *
95477005 AT-TCGATTTA-GTATAAGACCCTGCCTGGGACAGTGGCATCAAT
1 ATGT-GA-TTACATGTAAGACCATATCTGGGACATTGGCATCAAT
*
95477048 ATGTGATAACATGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATATCTGGGA
95477078 TATTATATTG
Statistics
Matches: 91, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
42 4 0.04
43 81 0.89
44 6 0.07
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCAAT
Found at i:95477882 original size:22 final size:22
Alignment explanation
Indices: 95477857--95477911 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
95477847 GTTATGTAAG
*
95477857 TTTGGTA-ATTTTGGCATATTGA
1 TTTGGTAGATTTTGG-ATATGGA
*
95477879 TTTGGTAGGTTTTGGATATGGA
1 TTTGGTAGATTTTGGATATGGA
95477901 TTTGAGTAGAT
1 TTTG-GTAGAT
95477912 AAGAGAATGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.47
Consensus pattern (22 bp):
TTTGGTAGATTTTGGATATGGA
Found at i:95480302 original size:41 final size:41
Alignment explanation
Indices: 95480254--95480336 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
95480244 TGTTATGAGT
* *
95480254 ACAAGCAATTTTTGGCTAGGCTTGGGTTGTGATGAAATTTA
1 ACAAGCAATGTTTGGCTAGGCTTAGGTTGTGATGAAATTTA
*
95480295 ACAAGCAATGTTTGGCTAGGCTTAGGTTGTGATGAAGTTTA
1 ACAAGCAATGTTTGGCTAGGCTTAGGTTGTGATGAAATTTA
95480336 A
1 A
95480337 AGAAATTCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.35
Consensus pattern (41 bp):
ACAAGCAATGTTTGGCTAGGCTTAGGTTGTGATGAAATTTA
Found at i:95482314 original size:20 final size:20
Alignment explanation
Indices: 95482277--95482314 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
95482267 CCTGTACATG
*
95482277 GTAAAAATTTTCTAAGTTTT
1 GTAAAAATTTCCTAAGTTTT
*
95482297 GTAAAAATTTCCTGAGTT
1 GTAAAAATTTCCTAAGTT
95482315 ATCGGTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (20 bp):
GTAAAAATTTCCTAAGTTTT
Found at i:95487134 original size:11 final size:11
Alignment explanation
Indices: 95487114--95487143 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
95487104 GATCTCATTG
*
95487114 TTCAATCCATC
1 TTCAAACCATC
95487125 TTCAAACCATC
1 TTCAAACCATC
95487136 TTCAAACC
1 TTCAAACC
95487144 TGATACACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (11 bp):
TTCAAACCATC
Found at i:95493110 original size:55 final size:53
Alignment explanation
Indices: 95493020--95493163 Score: 164
Period size: 55 Copynumber: 2.7 Consensus size: 53
95493010 CTTACCTTTT
* *
95493020 GAACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATTT-TTGCCTTATA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACAT--GATTTCTTGCCTTATA
** * * * * *
95493074 GTAGTTTATCAATGGCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTA
1 G-AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATTT-CTTGCCTTATA
95493129 GAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
95493164 TTGGTATCCG
Statistics
Matches: 72, Mismatches: 15, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
53 5 0.07
54 29 0.40
55 38 0.53
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (53 bp):
GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATTTCTTGCCTTATA
Found at i:95495768 original size:49 final size:48
Alignment explanation
Indices: 95495559--95495889 Score: 292
Period size: 48 Copynumber: 6.8 Consensus size: 48
95495549 ATACTAGGGT
* * * * **
95495559 TATGAGAGCTAGTGTAAGACCATGTCT-GAGACATGGTATC-AGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGA-ACATGGCATCGA-CATTTA
*
95495607 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
* * * *
95495655 TATGAGAGGCAATGTAAGACCATGTTTAGAACATGGCACCGACATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
* *
95495703 TATGAGAGCCAGTGTAAGACCATCTTTGGAACATGGCATTCGGCATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCA-TCGACATTTA
* * * * * ** * **
95495752 TACGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCCCCCTCGACA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACAT--TTA
* * * * *
95495802 TATG-G-GCTAGTGTAAGACTATGTTTGGAACATGTCATCGGCATCGATA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACAT--TTA
* * *
95495850 TATGAGAGCCAGTGTCAGACCATGTCTGGGACATGGCATC
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
95495890 AGCATCTTAC
Statistics
Matches: 232, Mismatches: 44, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
48 156 0.67
49 45 0.19
50 31 0.13
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
Found at i:95504031 original size:46 final size:46
Alignment explanation
Indices: 95503896--95504064 Score: 173
Period size: 46 Copynumber: 3.6 Consensus size: 46
95503886 GTGAGGTGCT
* * * *
95503896 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGCC
* * * *
95503943 GATACCATATCCTAGACATGGTCTTACACTGAC-TATCATCTCGTAGCC
1 GAT-GCATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCG-AGCC
* *
95503991 GATGCATGTCCTAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GCC
*
95504037 GATGCATGTCCCAAACAT-GTCTTACACT
1 GATGCATGTCCCAGACATGGTCTTACACT
95504065 AGCACTCGTC
Statistics
Matches: 103, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 48 0.47
47 48 0.47
48 6 0.06
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGCC
Found at i:95504139 original size:47 final size:46
Alignment explanation
Indices: 95504037--95504163 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
95504027 TCTCGAGGCC
* * **
95504037 GATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTTGATACT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATGATACT
* * *
95504083 AATGCCATGTCCCAAACATGGTCTTAAACTAGCTCTCATAATG-TGGCT
1 GATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATAATGAT-ACT
*
95504131 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTC
95504164 ACAATCACCC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
46 17 0.25
47 28 0.41
48 23 0.34
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATGATACT
Found at i:95504163 original size:46 final size:45
Alignment explanation
Indices: 95503991--95504163 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 45
95503981 TCTCGTAGCC
* * * * * *
95503991 GATGCATGTCCTAGACATGTCTTACACTGGCT-TACGTCTCGAGGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCT-CGTAT-GTGGCT
* * *
95504037 GATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCT-TGATACT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTATGTG--GCT
* * *
95504083 AATGCCATGTCCCAAACATGGTCTTAAACTAGCTCTCATAATGTGGCT
1 GATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGT-ATGTGGCT
*
95504131 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTC
95504164 ACAATCACCC
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
44 1 0.01
46 51 0.49
47 28 0.27
48 21 0.20
49 1 0.01
50 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTATGTGGCT
Found at i:95506027 original size:16 final size:16
Alignment explanation
Indices: 95506008--95506038 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95505998 CTTCTTCACT
95506008 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
95506024 TACTTACTTACTTAA
1 TACTCACTTACTTAA
95506039 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:95506044 original size:20 final size:20
Alignment explanation
Indices: 95506005--95506044 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
95505995 AAACTTCTTC
* *
95506005 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
95506025 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
95506045 TTATTAATGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:95506363 original size:53 final size:54
Alignment explanation
Indices: 95506270--95506485 Score: 231
Period size: 55 Copynumber: 4.0 Consensus size: 54
95506260 TATGTGGTAT
* * * * * *
95506270 CCTTTTGAAACTTACCATTGCCGTGTCTCGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
* *
95506324 CCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTG
* * * * * * * *
95506377 CCTTATAGAAACTTATCAATGTCATGTCTTGACGTGGTCTTATATGATTTCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
95506432 CCTTA-GAAATCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
95506486 AAATCCTAAG
Statistics
Matches: 130, Mismatches: 26, Indels: 11
0.78 0.16 0.07
Matches are distributed among these distances:
52 2 0.02
53 46 0.35
54 14 0.11
55 66 0.51
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
Found at i:95510084 original size:47 final size:47
Alignment explanation
Indices: 95510014--95510402 Score: 661
Period size: 47 Copynumber: 8.3 Consensus size: 47
95510004 CCCTTCGGGA
* * * *
95510014 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
95510061 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
95510108 CGTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
95510155 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
95510202 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
95510249 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
95510296 CTTATCACATATATACATATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
95510343 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
95510390 TTTACCACATATA
1 CTTATCACATATA
95510403 CATATCTTAT
Statistics
Matches: 326, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 326 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
Done.