Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 307 of 433
Found at i:95851579 original size:40 final size:39
Alignment explanation
Indices: 95851223--95851579 Score: 355
Period size: 40 Copynumber: 9.0 Consensus size: 39
95851213 CACATCACCG
* * * *
95851223 GCACGAATGCCCTTCGGGACTTAGCCCGGATATAACA-TCG
1 GCACAAATG-CCTTCGGGACTTAGCCCGGGTATATCACT-A
* * * *
95851263 GCACAAATACCCTTCGGGATTTAG-CCGGATATAGCTACTCA
1 GCACAAAT-GCCTTCGGGACTTAGCCCGGGTATATC-ACT-A
* * * *
95851304 -CTCAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGGTAT-ATCACTA
* * *
95851343 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGGTATA-TCACTA
* *
95851383 GCACAATTGCCTTCGGG-CTTAGCCC-GGAATTAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGGTA-TA-TCACTA
*
95851422 GCACAAATGCCTTCGGGACTTAGCCCGGTTATATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGGTATATCACTA
* * * *
95851461 GCACGAATGCTCTTCAGGACATAGCCCTGGTATATCACTA
1 GCACAAATGC-CTTCGGGACTTAGCCCGGGTATATCACTA
*
95851501 GCACGAATGCTCTTCGGGACTTAGCCCGGGTATATCACTA
1 GCACAAATGC-CTTCGGGACTTAGCCCGGGTATATCACTA
*
95851541 GCACGAATGCTCTTCGGGACTTAGCCCGGGTATATCACT
1 GCACAAATGC-CTTCGGGACTTAGCCCGGGTATATCACT
95851580 CTCAATTCTC
Statistics
Matches: 276, Mismatches: 30, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 70 0.25
40 199 0.72
41 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGGTATATCACTA
Found at i:95853205 original size:47 final size:47
Alignment explanation
Indices: 95853165--95853366 Score: 255
Period size: 47 Copynumber: 4.3 Consensus size: 47
95853155 TATATACACT
* * **
95853165 TTCACGTTCATCACATTGGCCATTCTGCCTTATCTAATATATGCACA
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCTAATATATGCATG
**
95853212 TTCACATTCATCACATTGGCCATTCGGCCTTATC-ACACGTATGCATG
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCTA-ATATATGCATG
* * *
95853259 CTCACATTCATCACATTGGACATTCGGCCTTATCTCATATATGCATG
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCTAATATATGCATG
* * *
95853306 TTCATATTCATCACATTGGCCATTCGGCCTTA-CCACATATATGCAGG
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCTA-ATATATGCATG
*
95853353 TTTACATTCATCAC
1 TTCACATTCATCAC
95853367 CTTAAATCCT
Statistics
Matches: 133, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
46 2 0.02
47 131 0.98
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCACATTCATCACATTGGCCATTCGGCCTTATCTAATATATGCATG
Found at i:95853237 original size:94 final size:94
Alignment explanation
Indices: 95853131--95853366 Score: 278
Period size: 94 Copynumber: 2.5 Consensus size: 94
95853121 ACACGTTTCG
* * * * * *
95853131 CATTAGCCATTCGG-CTTCGCCACATATATACACT-TTCACGTTCATCACATTGGCCATTCTGCC
1 CATTGGCCATTCGGCCTT-ACCACATATATACA-TGCTCACATTCATCACATTGGACATTCGGCC
95853194 TTATCTAATATATGCACATTCACATTCATCA
64 TTATCTAATATATGCACATTCACATTCATCA
* ** *
95853225 CATTGGCCATTCGGCCTTATCACACGTATGCATGCTCACATTCATCACATTGGACATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGCTCACATTCATCACATTGGACATTCGGCCTT
* ** *
95853290 ATCTCATATATGCATGTTCATATTCATCA
66 ATCTAATATATGCACATTCACATTCATCA
* * * *
95853319 CATTGGCCATTCGGCCTTACCACATATATGCAGGTTTACATTCATCAC
1 CATTGGCCATTCGGCCTTACCACATATATACATGCTCACATTCATCAC
95853367 CTTAAATCCT
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
93 1 0.01
94 116 0.97
95 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGCTCACATTCATCACATTGGACATTCGGCCTT
ATCTAATATATGCACATTCACATTCATCA
Found at i:95856724 original size:10 final size:10
Alignment explanation
Indices: 95856709--95856768 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
95856699 TAATTTTAGG
95856709 ATTTAT-TTT
1 ATTTATCTTT
95856718 CATTTATCTTT
1 -ATTTATCTTT
95856729 ATTTATCTTT
1 ATTTATCTTT
*
95856739 AATTATCTTT
1 ATTTATCTTT
*
95856749 AATTAT-TTGT
1 ATTTATCTT-T
95856759 ATTTATCTTT
1 ATTTATCTTT
95856769 TAGAATTTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:95859697 original size:2 final size:2
Alignment explanation
Indices: 95859692--95859722 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
95859682 ATATAGCCGA
95859692 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95859723 GTTCATCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95863223 original size:21 final size:20
Alignment explanation
Indices: 95863199--95863238 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
95863189 CATGCATTTT
*
95863199 AATGATTGATTATAGATTATG
1 AATGATTGATGATAG-TTATG
*
95863220 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
95863239 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:95871401 original size:6 final size:6
Alignment explanation
Indices: 95871198--95871400 Score: 381
Period size: 6 Copynumber: 33.7 Consensus size: 6
95871188 CTAAGAATTA
95871198 AAAATC AAAATC TAAAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
1 AAAATC AAAATC --AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
95871248 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
95871296 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
95871344 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
95871392 AAAAT- AAAA
1 AAAATC AAAA
95871401 AGAAAATAAA
Statistics
Matches: 195, Mismatches: 0, Indels: 5
0.98 0.00 0.03
Matches are distributed among these distances:
5 4 0.02
6 185 0.95
8 6 0.03
ACGTcount: A:0.67, C:0.16, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:95872970 original size:28 final size:29
Alignment explanation
Indices: 95872939--95872994 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
95872929 CCGAAATTCT
95872939 GATAT-CATGGC-CTGAAGCCAAATCAGTC
1 GATATGCATGGCTC-GAAGCCAAATCAGTC
95872967 GATATGCATGGCTCGAAGCCAAATCAGT
1 GATATGCATGGCTCGAAGCCAAATCAGT
95872995 TTATCTCGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 5 0.19
29 20 0.77
30 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.21
Consensus pattern (29 bp):
GATATGCATGGCTCGAAGCCAAATCAGTC
Found at i:95875806 original size:2 final size:2
Alignment explanation
Indices: 95875799--95875823 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95875789 GAGACTAGTC
95875799 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
95875824 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95877859 original size:30 final size:30
Alignment explanation
Indices: 95877825--95877885 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
95877815 TCCTTAACTC
95877825 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
95877855 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
95877885 A
1 A
95877886 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:95882868 original size:15 final size:15
Alignment explanation
Indices: 95882832--95882866 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
95882822 CTTATTCTTT
*
95882832 CTTTTATTATTATTA
1 CTTTTATTATTATAA
95882847 CTTTTATTATTATAA
1 CTTTTATTATTATAA
95882862 TCTTT
1 -CTTT
95882867 ATACATGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (15 bp):
CTTTTATTATTATAA
Found at i:95887274 original size:2 final size:2
Alignment explanation
Indices: 95887269--95887296 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
95887259 AAATTAGTAA
95887269 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95887297 GAGTCTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95889921 original size:35 final size:35
Alignment explanation
Indices: 95889882--95889951 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
95889872 TTTAGCTAGG
95889882 ATGATTTCATCAATTCAATTAAGTTTGTTTAAATC
1 ATGATTTCATCAATTCAATTAAGTTTGTTTAAATC
95889917 ATGATTTCATCAATTCAATTAAGTTTGTTTAAATC
1 ATGATTTCATCAATTCAATTAAGTTTGTTTAAATC
95889952 TTGTTTATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (35 bp):
ATGATTTCATCAATTCAATTAAGTTTGTTTAAATC
Found at i:95892755 original size:26 final size:26
Alignment explanation
Indices: 95892733--95892792 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
95892723 ACTTTTAATT
95892733 AGGAAGCTCACGAAGAGCCTTTAAAC
1 AGGAAGCTCACGAAGAGCCTTTAAAC
* * * *
95892759 GGGAAGTTCACGAAGAGCCATTAACC
1 AGGAAGCTCACGAAGAGCCTTTAAAC
95892785 AGG-AGCTC
1 AGGAAGCTC
95892793 CAGATAGACA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
25 4 0.14
26 24 0.86
ACGTcount: A:0.35, C:0.23, G:0.27, T:0.15
Consensus pattern (26 bp):
AGGAAGCTCACGAAGAGCCTTTAAAC
Found at i:95899705 original size:40 final size:40
Alignment explanation
Indices: 95899622--95899733 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
95899612 TCGAATGATG
* *
95899622 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
95899662 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
*
95899702 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
95899734 CTATTATAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.02
40 53 0.85
41 8 0.13
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:95901319 original size:45 final size:45
Alignment explanation
Indices: 95901211--95901320 Score: 159
Period size: 45 Copynumber: 2.5 Consensus size: 45
95901201 TATAGGTCTA
* * *
95901211 TAGCGGCGCTTCTGT-AGAAAAACGCCGCTATAGACCTGTACTTT
1 TAGCGGCGCTTTTGTAAAAAAAACACCGCTATAGACCTGTACTTT
* *
95901255 TAGCGGCGCTTTTGCAAAAAAAACACCGCTATTGACCTGTACTTT
1 TAGCGGCGCTTTTGTAAAAAAAACACCGCTATAGACCTGTACTTT
*
95901300 TAGCGGCGCTTTTTTAAAAAA
1 TAGCGGCGCTTTTGTAAAAAA
95901321 TGCCGCTAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
44 13 0.22
45 45 0.78
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
TAGCGGCGCTTTTGTAAAAAAAACACCGCTATAGACCTGTACTTT
Found at i:95902240 original size:18 final size:18
Alignment explanation
Indices: 95902208--95902245 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
95902198 TACAATATAG
95902208 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
95902227 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
95902244 TA
1 TA
95902246 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:95907209 original size:30 final size:30
Alignment explanation
Indices: 95907173--95907273 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
95907163 GACAAGATTG
* * *
95907173 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
95907203 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
95907231 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
95907260 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
95907274 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:95907285 original size:29 final size:28
Alignment explanation
Indices: 95907202--95907277 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
95907192 AAAATTGTAC
* *
95907202 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
95907230 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
95907259 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
95907278 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:95917382 original size:46 final size:45
Alignment explanation
Indices: 95917331--95917497 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 45
95917321 GACGAGGGCT
95917331 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCC
* * *
95917377 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGAGCC
* * * * * *
95917423 AGTGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GAGCC
* *
95917467 AGTGTAAGACATGTATGGGACATGCGTCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
95917498 ACGGTTACAT
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.02
44 32 0.30
46 70 0.66
47 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCC
Found at i:95917427 original size:92 final size:90
Alignment explanation
Indices: 95917280--95917491 Score: 246
Period size: 92 Copynumber: 2.3 Consensus size: 90
95917270 AGATTTGTGT
* * * *
95917280 GCCAGTGTAAGACCATGTATGAGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGT
1 GCCAGTGTAAGA-CATGTATGGGACAT-GCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGT
95917345 CTGGGACATGCATCAGCCAC-AGTATGAGA
64 CTGGGACATGCATCAGCCACGAG-AT--GA
* * * * *
95917374 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCCAGTGTCAGACATGTCT
1 GCCAGTGTAAGACATGTATGGGACATGCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGTCT
* * * *
95917439 GGGACATGCGTCGGCTACGAGATGT
66 GGGACATGCATCAGCCACGAGATGA
*
95917464 GCTAGTGTAAGACATGTATGGGACATGC
1 GCCAGTGTAAGACATGTATGGGACATGC
95917492 GTCAGCACGG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
90 27 0.26
92 49 0.48
93 14 0.14
94 12 0.12
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.22
Consensus pattern (90 bp):
GCCAGTGTAAGACATGTATGGGACATGCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGTCT
GGGACATGCATCAGCCACGAGATGA
Found at i:95917532 original size:46 final size:43
Alignment explanation
Indices: 95917331--95917534 Score: 162
Period size: 46 Copynumber: 4.5 Consensus size: 43
95917321 GACGAGGGCT
* * * *
95917331 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGA-CAT--GTG-C
* * *
95917377 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCGTCAG-CTACGACATG-T-G-C
* * *
95917423 AGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGATGTGC
1 AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC
*
95917466 TAGTGTAAGACATGTATGGGACATGCGTCAGC-ACGGTTACATGTGTC
1 -AGTGTAAGACATGTCTGGGACATGCGTCAGCTAC-G--ACATGTG-C
*
95917513 AGTGTAAGACCTGTCTGGGACA
1 AGTGTAAGACATGTCTGGGACA
95917535 CGGCATCGAC
Statistics
Matches: 136, Mismatches: 12, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
43 3 0.02
44 31 0.23
45 3 0.02
46 96 0.71
47 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC
Found at i:95923471 original size:46 final size:46
Alignment explanation
Indices: 95923369--95923536 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
95923359 AGATTTGTGT
* * * * * *
95923369 GCCAGTGTAAGACCATGTATGAGACATGGCATC-GGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CGAGATGAGA
*
95923417 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAG-ATGAGA
* * *
95923463 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGA
*
95923509 GCCAGTGTCAGACATGTCTGGGACATGC
1 GCCAGTGTAAGACATGTCTGGGACATGC
95923537 GTCNTGAAAA
Statistics
Matches: 105, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
45 2 0.02
46 75 0.71
47 17 0.16
48 11 0.10
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGA
Found at i:95924774 original size:15 final size:15
Alignment explanation
Indices: 95924735--95924814 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
95924725 GTATCTTGGG
*
95924735 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
95924750 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
95924765 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
95924780 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
95924795 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
95924809 TTTCTT
1 TTTCTT
95924815 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:95924804 original size:30 final size:30
Alignment explanation
Indices: 95924726--95924813 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
95924716 CATAGTATCG
* * *
95924726 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
95924756 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
95924786 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
95924814 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:95927239 original size:46 final size:46
Alignment explanation
Indices: 95927184--95927364 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
95927174 TAGGATGGTT
95927184 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
95927230 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
95927276 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
95927323 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95927365 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:95927345 original size:93 final size:93
Alignment explanation
Indices: 95927186--95927356 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
95927176 GGATGGTTGA
* *
95927186 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
95927251 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
95927279 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
95927344 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
95927357 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:95929204 original size:12 final size:12
Alignment explanation
Indices: 95929189--95929227 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
95929179 CCTTTGGGCC
*
95929189 TTTGGTTTTTGT
1 TTTGTTTTTTGT
*
95929201 TTTGTTTTTTAT
1 TTTGTTTTTTGT
*
95929213 TTTATTTTTTGT
1 TTTGTTTTTTGT
95929225 TTT
1 TTT
95929228 CTGCCTTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.05, C:0.00, G:0.13, T:0.82
Consensus pattern (12 bp):
TTTGTTTTTTGT
Found at i:95931563 original size:33 final size:33
Alignment explanation
Indices: 95931521--95931594 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 33
95931511 AATGAATAAT
**
95931521 TTATATAATC-AATTAATATTTTTATATTTAAAA
1 TTATATAATCTAATTAAT-TTGATATATTTAAAA
* *
95931554 TTATTTAATCTAATTCATTTGATATATTTAAATA
1 TTATATAATCTAATTAATTTGATATATTTAAA-A
*
95931588 TTTTATA
1 TTATATA
95931595 TATTAAATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
33 21 0.64
34 12 0.36
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (33 bp):
TTATATAATCTAATTAATTTGATATATTTAAAA
Found at i:95931595 original size:17 final size:16
Alignment explanation
Indices: 95931535--95931606 Score: 60
Period size: 16 Copynumber: 4.4 Consensus size: 16
95931525 ATAATCAATT
95931535 AATATTTTTATATTTA
1 AATATTTTTATATTTA
*
95931551 AA-ATTATTTA-ATCTA
1 AATATT-TTTATATTTA
* *
95931566 ATTCATTTGATATATTTA
1 AAT-ATTT-TTATATTTA
95931584 AATA-TTTTATATATTA
1 AATATTTTTATAT-TTA
95931600 AATATTT
1 AATATTT
95931607 AAAAAAATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
15 13 0.30
16 16 0.37
17 8 0.19
18 6 0.14
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (16 bp):
AATATTTTTATATTTA
Found at i:95932043 original size:149 final size:149
Alignment explanation
Indices: 95931773--95932046 Score: 442
Period size: 149 Copynumber: 1.8 Consensus size: 149
95931763 AATTTTAATA
* *
95931773 TATATACTTTAATTTCTAATATAATTTGATCCTCTATCATTAGTTTGTTTAAATAGTTAAATATT
1 TATATACTTTAATTTCTAATATAATTTGATCCTCTATCATTAATTAGTTTAAATAGTTAAATATT
* *
95931838 ATTAAATATTTCAATCAAAATACTTACATTATTTTTTTCTTGAAAACATTATTCTAATAATATGC
66 AATAAATATTTCAATCAAAATACTTACATTATTTTTTTCTCGAAAACATTATTCTAATAATATGC
95931903 TAAAATTTAAGATTCAATC
131 TAAAATTTAAGATTCAATC
* *
95931922 TATATACTTTAATTTTTAATATAATTTGATTCTCTATCATTAATTAGTTTAAATAGTTAAATATT
1 TATATACTTTAATTTCTAATATAATTTGATCCTCTATCATTAATTAGTTTAAATAGTTAAATATT
* * * *
95931987 AATAACTATTTCAATGAAAAT-GTTGACATTATTTTTTTCTCGAGAACATTATTCTAATAA
66 AATAAATATTTCAATCAAAATACTT-ACATTATTTTTTTCTCGAAAACATTATTCTAATAA
95932047 AAATTATTTT
Statistics
Matches: 114, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
148 2 0.02
149 112 0.98
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (149 bp):
TATATACTTTAATTTCTAATATAATTTGATCCTCTATCATTAATTAGTTTAAATAGTTAAATATT
AATAAATATTTCAATCAAAATACTTACATTATTTTTTTCTCGAAAACATTATTCTAATAATATGC
TAAAATTTAAGATTCAATC
Found at i:95932309 original size:9 final size:9
Alignment explanation
Indices: 95932295--95932328 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
95932285 GTTAATCAAA
95932295 TCGAGTTAT
1 TCGAGTTAT
95932304 TCGAGTTAT
1 TCGAGTTAT
*
95932313 TCGAATTAT
1 TCGAGTTAT
*
95932322 TCAAGTT
1 TCGAGTT
95932329 CTGAGTTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:95932513 original size:10 final size:9
Alignment explanation
Indices: 95932482--95932540 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
95932472 AATAATTTTG
*
95932482 AAAATTTAG
1 AAAATTTAA
*
95932491 AATATTTATA
1 AAAATTTA-A
*
95932501 AAACTTTAA
1 AAAATTTAA
*
95932510 AAAAATTAA
1 AAAATTTAA
*
95932519 AAAGATATAA
1 AAA-ATTTAA
95932529 AAAATTTAA
1 AAAATTTAA
95932538 AAA
1 AAA
95932541 TTTTCTAAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
9 26 0.67
10 13 0.33
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (9 bp):
AAAATTTAA
Found at i:95932719 original size:10 final size:10
Alignment explanation
Indices: 95932704--95932732 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
95932694 AAAAATTTTC
95932704 ACTTAATTCA
1 ACTTAATTCA
95932714 ACTTAATTCA
1 ACTTAATTCA
95932724 ACTTAATTC
1 ACTTAATTC
95932733 GATCAACCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (10 bp):
ACTTAATTCA
Found at i:95933015 original size:14 final size:14
Alignment explanation
Indices: 95932996--95933035 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
95932986 TACCTTTCTT
95932996 TTCTTTCTCCTCTC
1 TTCTTTCTCCTCTC
95933010 TTCTTT-TCCCTCTC
1 TTCTTTCT-CCTCTC
*
95933024 TTTTTTCTCCTC
1 TTCTTTCTCCTC
95933036 ACTGCCAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 1 0.04
14 21 0.91
15 1 0.04
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (14 bp):
TTCTTTCTCCTCTC
Found at i:95941697 original size:117 final size:120
Alignment explanation
Indices: 95941454--95941705 Score: 376
Period size: 117 Copynumber: 2.1 Consensus size: 120
95941444 TGTTATTGTT
* *
95941454 ATTAAATT-TTAATA-AGATTATTATTAAATATAATTTAATAAAAATATAAATTAAATAATTTAA
1 ATTACATTCTTAATATAGATTATTATTAAATATAATTTAACAAAAATATAAATTAAATAATTTAA
95941517 TCATATTTTAACATAATTATTATTAAATACAATTTAATAAAATAATATATAATTTA
66 TCATATTTTAACATAA-TATTATTAAATACAATTTAATAAAATAATATATAATTTA
*
95941573 ATAACATTCTTAATATA-ATTATTATTAAAATATGAA-TTAACAAAAATCAT-AA-TAAATAATT
1 ATTACATTCTTAATATAGATTATTATT-AAATAT-AATTTAACAAAAAT-ATAAATTAAATAATT
*
95941634 TAATCATATTTTAACAT-A-ATTATTAAATACAATTTAATAGAATAATATATAATTTA
63 TAATCATATTTTAACATAATATTATTAAATACAATTTAATAAAATAATATATAATTTA
95941690 ATTACATTCTTAATAT
1 ATTACATTCTTAATAT
95941706 TTTAGACAAA
Statistics
Matches: 123, Mismatches: 5, Indels: 12
0.88 0.04 0.09
Matches are distributed among these distances:
117 52 0.42
119 7 0.06
120 41 0.33
121 19 0.15
122 4 0.03
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (120 bp):
ATTACATTCTTAATATAGATTATTATTAAATATAATTTAACAAAAATATAAATTAAATAATTTAA
TCATATTTTAACATAATATTATTAAATACAATTTAATAAAATAATATATAATTTA
Found at i:95943027 original size:20 final size:21
Alignment explanation
Indices: 95943002--95943041 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
95942992 CACACACGCC
95943002 CTCGTG-GT-CCTAGGGACACG
1 CTCGTGTGTCCCT-GGGACACG
95943022 CTCGTGTGTCCCTGGGACAC
1 CTCGTGTGTCCCTGGGACAC
95943042 ACCCGTGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 9 0.50
22 3 0.17
ACGTcount: A:0.12, C:0.33, G:0.33, T:0.23
Consensus pattern (21 bp):
CTCGTGTGTCCCTGGGACACG
Found at i:95943798 original size:16 final size:16
Alignment explanation
Indices: 95943773--95943803 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95943763 TGTGAGTGAT
*
95943773 CTCCACCAAGCTTCCA
1 CTCCAACAAGCTTCCA
95943789 CTCCAACAAGCTTCC
1 CTCCAACAAGCTTCC
95943804 GATTTACTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.48, G:0.06, T:0.19
Consensus pattern (16 bp):
CTCCAACAAGCTTCCA
Found at i:95947106 original size:10 final size:10
Alignment explanation
Indices: 95947093--95947117 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
95947083 AAATTTTAAA
95947093 TTAGAGGTCC
1 TTAGAGGTCC
95947103 TTAGAGGTCC
1 TTAGAGGTCC
95947113 TTAGA
1 TTAGA
95947118 TGGTAATTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (10 bp):
TTAGAGGTCC
Found at i:95948149 original size:43 final size:42
Alignment explanation
Indices: 95948051--95948171 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 42
95948041 TAGGGTTACT
* *
95948051 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATAGCATCGATAC
* * * *
95948093 GACACTT-TGTGTAAGACCATAGCTGGGCTATTAGCATCGATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATA-TAGCATCGATAC
*
95948136 GAGATTACATGTAAGACCATATCTGGGATATAGCAT
1 GAGATTACGTGTAAGACCATATCTGGGATATAGCAT
95948172 TGGTACAGTA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATAGCATCGATAC
Found at i:95948191 original size:42 final size:40
Alignment explanation
Indices: 95948059--95948193 Score: 126
Period size: 42 Copynumber: 3.2 Consensus size: 40
95948049 CTGAGATTAC
* * *
95948059 GTGTAAGACCATATCTGGGATATGGCATCGATATGACACTTT
1 GTGTAAGACCATATCTGGGATATAGCATCGATA-CAGA-TTT
* * *
95948101 GTGTAAGACCATAGCTGGGCTATTAGCATCGATACGAGATTAC
1 GTGTAAGACCATATCTGGGATA-TAGCATCGATAC-AGATT-T
* * *
95948144 ATGTAAGACCATATCTGGGATATAGCATTGGTACAGTATTGT
1 GTGTAAGACCATATCTGGGATATAGCATCGATACAG-ATT-T
95948186 GTGTAAGA
1 GTGTAAGA
95948194 GATTTTCGAG
Statistics
Matches: 75, Mismatches: 14, Indels: 8
0.77 0.14 0.08
Matches are distributed among these distances:
41 2 0.03
42 42 0.56
43 31 0.41
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (40 bp):
GTGTAAGACCATATCTGGGATATAGCATCGATACAGATTT
Found at i:95952830 original size:43 final size:43
Alignment explanation
Indices: 95952670--95952840 Score: 157
Period size: 43 Copynumber: 4.0 Consensus size: 43
95952660 TAGGTTACCT
* * * *
95952670 ATATGTGATTACATGTAGGACCATGTTTGGGACATTGGAATTG
1 ATATGTGATTACATGTAAGACCATATCTGGGACATTGGCATTG
* *
95952713 -TATTGTGATTACATGTAAGACCATGTCTGGGACATTGACATTG
1 ATA-TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTG
* * *** * * * *
95952756 TTATTTGATTTTTTGTAAGACCCTATCTGGGATAGTGGCATCG
1 ATATGTGATTACATGTAAGACCATATCTGGGACATTGGCATTG
* * *
95952799 ATATGTGATAACATGTAAGACCATATTTGGGATA-TGGCATTG
1 ATATGTGATTACATGTAAGACCATATCTGGGACATTGGCATTG
95952841 TACGAGCTTT
Statistics
Matches: 103, Mismatches: 23, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
42 9 0.09
43 92 0.89
44 2 0.02
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCATATCTGGGACATTGGCATTG
Found at i:95957087 original size:20 final size:20
Alignment explanation
Indices: 95957062--95957102 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
95957052 GGGGCCGCAA
95957062 AATAGTAATGGAAGATTTCT
1 AATAGTAATGGAAGATTTCT
95957082 AATAGTAATGGAAGATTTCT
1 AATAGTAATGGAAGATTTCT
95957102 A
1 A
95957103 TGTGAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (20 bp):
AATAGTAATGGAAGATTTCT
Found at i:95957314 original size:30 final size:30
Alignment explanation
Indices: 95957278--95957338 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
95957268 CAAAGTTGAA
* *
95957278 GTTCAAAAGAGGATTAGATCCAATCATCAT
1 GTTCAAAAGAGGATTAGATCAAATCACCAT
95957308 GTTCAAAAGAGGATTAGATCAAATCACCAT
1 GTTCAAAAGAGGATTAGATCAAATCACCAT
95957338 G
1 G
95957339 CAAATGTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (30 bp):
GTTCAAAAGAGGATTAGATCAAATCACCAT
Found at i:95960449 original size:80 final size:79
Alignment explanation
Indices: 95960304--95960465 Score: 186
Period size: 80 Copynumber: 2.0 Consensus size: 79
95960294 ATGTCTGGGC
* * **
95960304 TAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCTGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
95960369 TTA-CTAAATCCGGGT
66 -TAGCTAAATCC-GGT
* * * *
95960384 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCTCGAAGGCATTTGAACG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGATC-CGAAGGCATTTGAACG
*
95960447 AGTAGCTATATCCGGT
64 AGTAGCTAAATCCGGT
95960463 TAA
1 TAA
95960466 ACTCCGAAGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
79 10 0.14
80 53 0.76
81 7 0.10
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (79 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:95960456 original size:40 final size:40
Alignment explanation
Indices: 95960300--95960442 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
95960290 AATGATGTCT
* * * *
95960300 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
*
95960340 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
*
95960380 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
* *
95960420 GGGCTATGTCTCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
95960443 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
39 2 0.02
40 76 0.86
41 10 0.11
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:95963255 original size:43 final size:43
Alignment explanation
Indices: 95963175--95963256 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
95963165 GTCGTACAAC
* *
95963175 GCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCGAT
1 GCCAATGTCCCAGACAGGGTCTTACATGTAAACACATATCGAT
* *
95963218 GCCACTGTCCCAGACAGGGTCTTAC-TCGTAAAGACATAT
1 GCCAATGTCCCAGACAGGGTCTTACAT-GTAAACACATAT
95963257 TGAAATCACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 1 0.03
43 33 0.97
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
GCCAATGTCCCAGACAGGGTCTTACATGTAAACACATATCGAT
Found at i:95966148 original size:27 final size:27
Alignment explanation
Indices: 95966118--95966171 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
95966108 TCATACAACC
* * *
95966118 CATGTAATAGTAATTTAACATTGAATT
1 CATGTAACAATAATTTAACATTCAATT
*
95966145 CATGTAACAATAATTTACCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
95966172 ACACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:95969882 original size:40 final size:40
Alignment explanation
Indices: 95969833--95970015 Score: 162
Period size: 40 Copynumber: 4.6 Consensus size: 40
95969823 GACTAGCTCG
* * *
95969833 ATTGTCTTCGGGACATT-GCCCGGTTATAGTGATTCGCACA
1 ATTGCCTTCGGGACATTAGCCCGGTT-TAGTAACTCGCACA
95969873 ATTGCCTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACGA
1 ATTGCCTTCGGGACATTAGCCCGG-TTTAGTAACTCGCAC-A
* *
95969914 A-TGCCTTCGGGAC-TTAACCCGGTTTTGGTAACTCGCACA
1 ATTGCCTTCGGGACATTAGCCCGG-TTTAGTAACTCGCACA
* * ** * *
95969953 AATGCCTTCGGGAC-TTAACCCATTTTAGTCACTTAGCACA
1 ATTGCCTTCGGGACATTAGCCCGGTTTAGTAAC-TCGCACA
**
95969993 AAAGCCTTCGGGAC-TTAGCCCGG
1 ATTGCCTTCGGGACATTAGCCCGG
95970016 ATACCATTCG
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 12 0.10
40 106 0.87
41 4 0.03
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
ATTGCCTTCGGGACATTAGCCCGGTTTAGTAACTCGCACA
Found at i:95969936 original size:80 final size:80
Alignment explanation
Indices: 95969838--95970015 Score: 200
Period size: 80 Copynumber: 2.2 Consensus size: 80
95969828 GCTCGATTGT
* * * *
95969838 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGA-TTTA
1 CTTCGGGAC-TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCC--ATTTTA
* * *
95969901 GTAAC-TCGCACGAATGC
63 GTAACTTAGCACAAAAGC
* * * * *
95969918 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCATTTTAGTC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCATTTTAGTA
95969983 ACTTAGCACAAAAGC
66 ACTTAGCACAAAAGC
95969998 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
95970016 ATACCATTCG
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.01
79 10 0.12
80 71 0.87
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCATTTTAGTA
ACTTAGCACAAAAGC
Found at i:95977968 original size:40 final size:40
Alignment explanation
Indices: 95977919--95978098 Score: 165
Period size: 40 Copynumber: 4.5 Consensus size: 40
95977909 GACTAGCTCG
* * *
95977919 ATTGTCTTCGGGACATT-GCCCGGTTATAGTGATTCGCACA
1 ATTGCCTTCGGGACATTAGCCCGGTT-TAGTAACTCGCACA
95977959 ATTGCCTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACGA
1 ATTGCCTTCGGGACATTAGCCCGG-TTTAGTAACTCGCAC-A
* *
95978000 A-TGCCTTCGGGAC-TTAACCCGGTTTTGGTAACTCGCACA
1 ATTGCCTTCGGGACATTAGCCCGG-TTTAGTAACTCGCACA
* * * * *
95978039 AATGCCTTCGGGAC-TTAACCCGTTTTAGTCACTTAGCACA
1 ATTGCCTTCGGGACATTAGCCCGGTTTAGTAAC-TCGCACA
**
95978079 AAAGCCTTCGGGAC-TTAGCC
1 ATTGCCTTCGGGACATTAGCC
95978099 GGATACCATT
Statistics
Matches: 122, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 12 0.10
40 106 0.87
41 4 0.03
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
ATTGCCTTCGGGACATTAGCCCGGTTTAGTAACTCGCACA
Found at i:95978022 original size:80 final size:80
Alignment explanation
Indices: 95977924--95978095 Score: 195
Period size: 80 Copynumber: 2.1 Consensus size: 80
95977914 GCTCGATTGT
* * * * *
95977924 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAG
1 CTTCGGGAC-TTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCC-GATTTAG
* * *
95977988 TAAC-TCGCACGAATGC
64 TAACTTAGCACAAAAGC
* * * * *
95978004 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCGTTTTAGTC
1 CTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGATTTAGTA
95978069 ACTTAGCACAAAAGC
66 ACTTAGCACAAAAGC
95978084 CTTCGGGACTTA
1 CTTCGGGACTTA
95978096 GCCGGATACC
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 11 0.14
80 66 0.86
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGATTTAGTA
ACTTAGCACAAAAGC
Found at i:95978814 original size:2 final size:2
Alignment explanation
Indices: 95978807--95978832 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
95978797 ATGTGCAAAC
95978807 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
95978833 GCTAGAGCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95979877 original size:46 final size:45
Alignment explanation
Indices: 95979810--95979991 Score: 197
Period size: 46 Copynumber: 3.9 Consensus size: 45
95979800 TGTCACACAT
*
95979810 ATCTCGTA-GCCGATGCATGTCCCAGACACGTCTTACACTGGCTTAC
1 ATCTCG-AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-C
*
95979856 ATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTC
1 ATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTC
** *
95979902 ATCTTAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
1 ATCTCGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TC
* * * * *
95979950 ATAAT-GTGGCCAATGCATGTCCCAAACATGTCTTACATTGGC
1 AT-CTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGC
95979992 ACACAAATAA
Statistics
Matches: 117, Mismatches: 13, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
45 1 0.01
46 63 0.54
47 30 0.26
48 22 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
ATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTC
Found at i:95979985 original size:94 final size:92
Alignment explanation
Indices: 95979818--95979986 Score: 243
Period size: 94 Copynumber: 1.8 Consensus size: 92
95979808 ATATCTCGTA
* * *
95979818 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGAC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAAAC
95979883 ATGTCTTACACTAGCTTTCATCTTAAT
66 ATGTCTTACACTAGCTTTCATCTTAAT
* *
95979910 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCAATGCATGTCCC
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCT-TACAT-ATCGAGGCCAATGCATGTCCC
95979973 AAACATGTCTTACA
62 AAACATGTCTTACA
95979987 TTGGCACACA
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 46 0.68
95 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAAAC
ATGTCTTACACTAGCTTTCATCTTAAT
Found at i:95984378 original size:61 final size:61
Alignment explanation
Indices: 95984283--95984410 Score: 247
Period size: 61 Copynumber: 2.1 Consensus size: 61
95984273 ACAGTCCACT
95984283 ACAACACTATGAAAAGTTAACCAATCCATTCCAAGGATTACATCAAATTCATCAAACGACA
1 ACAACACTATGAAAAGTTAACCAATCCATTCCAAGGATTACATCAAATTCATCAAACGACA
*
95984344 ACAACACTATGAGAAGTTAACCAATCCATTCCAAGGATTACATCAAATTCATCAAACGACA
1 ACAACACTATGAAAAGTTAACCAATCCATTCCAAGGATTACATCAAATTCATCAAACGACA
95984405 ACAACA
1 ACAACA
95984411 TGAGGTTAGC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 66 1.00
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (61 bp):
ACAACACTATGAAAAGTTAACCAATCCATTCCAAGGATTACATCAAATTCATCAAACGACA
Found at i:95987783 original size:48 final size:45
Alignment explanation
Indices: 95987542--95987808 Score: 133
Period size: 46 Copynumber: 5.8 Consensus size: 45
95987532 TGGTCTTACA
* * * * *
95987542 TGCCGATGCCATGTCCCATACATGGTCTTATATTGGCAC-CTTTATACG
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACT-GCACTC-ATA-ATG
* * *
95987590 TGCTGATGCCATGTCCCAGACATGGTCTTACACTG-ACACAT-CTCG
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTGCACTCATAAT-G
** *
95987635 TAGCCGATGCATGTCCCAGACA-CATCTTACACTGC-CTTACAT-CTCG
1 T-GCCGATGCATGTCCCAGACATGGTCTTACACTGCAC-T-CATAAT-G
* * *
95987681 AGGCCGATGCATGTCCCAAACAT-GTCTTACACTAGCTCTTGTC-TCAATG
1 -TGCCGATGCATGTCCCAGACATGGTCTTACACT-GCAC---TCAT-AATG
* *
95987730 T--CGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATAATG
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACT-GCACTCATAATG
*
95987775 TGGCCGATGCATGTCCTAGACAT-GTCTTACACTG
1 T-GCCGATGCATGTCCCAGACATGGTCTTACACTG
95987809 GCACACAAAT
Statistics
Matches: 178, Mismatches: 21, Indels: 43
0.74 0.09 0.18
Matches are distributed among these distances:
44 11 0.06
45 23 0.13
46 59 0.33
47 30 0.17
48 51 0.29
49 2 0.01
50 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGGTCTTACACTGCACTCATAATG
Found at i:95987788 original size:47 final size:47
Alignment explanation
Indices: 95987594--95987807 Score: 157
Period size: 46 Copynumber: 4.6 Consensus size: 47
95987584 TATACGTGCT
* * *
95987594 GATGCCATGTCCCAGACATGGTCTTACACT-GACACATCTC---GTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTTCTCAATGTGGCC
** *
95987640 GATGCATGTCCCAGACACATCTTACACT-GC-CTTACATC--TCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTT-C-TCAAT-GTGGCC
*
95987686 GATGCATGTCCCAAACATGTCTTACACTAGCTCTTGTCTCAATGT---C
1 GATGCATGTCCCAGACATGTCTTACACTAGCTC-T-TCTCAATGTGGCC
*
95987732 GATGCCATGTCCCAGACATGGTCTTACATTAGCTC-TCAT-AATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTTC-TCAATGTGGCC
*
95987780 GATGCATGTCCTAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
95987808 GGCACACAAA
Statistics
Matches: 139, Mismatches: 13, Indels: 32
0.76 0.07 0.17
Matches are distributed among these distances:
42 2 0.01
43 2 0.01
44 12 0.09
45 20 0.14
46 48 0.35
47 28 0.20
48 22 0.16
49 3 0.02
50 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTTCTCAATGTGGCC
Found at i:95994858 original size:10 final size:10
Alignment explanation
Indices: 95994843--95994868 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
95994833 CACTAATGTT
95994843 TATATACATA
1 TATATACATA
95994853 TATATACATA
1 TATATACATA
95994863 TATATA
1 TATATA
95994869 ATTATTGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (10 bp):
TATATACATA
Found at i:95996880 original size:9 final size:9
Alignment explanation
Indices: 95996866--95996892 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
95996856 TCACAACAAC
95996866 CATACCAAA
1 CATACCAAA
95996875 CATACCAAA
1 CATACCAAA
95996884 CATACCAAA
1 CATACCAAA
95996893 ACACAAGGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.33, G:0.00, T:0.11
Consensus pattern (9 bp):
CATACCAAA
Found at i:95997862 original size:43 final size:43
Alignment explanation
Indices: 95997797--95997961 Score: 187
Period size: 43 Copynumber: 3.9 Consensus size: 43
95997787 AACTCGTACA
* * * *
95997797 ATGCCA-TATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* *
95997839 ATGCCATTGTCCCAGACAGGGTCTTACACG-AGATCATATAAT-G
1 ATGCCATTGTCCCAGACATGGTCTTACACGTA-ATCACAT-ATCG
* *
95997882 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCA-ATA-CA
1 ATGCCATTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* *
95997923 ATGCCATTGTCCCAGACATGGTCTTACATGTCATCACAT
1 ATGCCATTGTCCCAGACATGGTCTTACACGTAATCACAT
95997962 CTCTATAATC
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
41 34 0.32
42 10 0.10
43 58 0.55
44 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCATTGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:96002429 original size:43 final size:43
Alignment explanation
Indices: 96002364--96002457 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
96002354 GAGGACATAC
* *
96002364 GCCCGTGTAGCACGGCCATGTGTCTCACATAGCCACCAGACAT
1 GCCCGTGTAGCACAGCCATGTGTCTCACACAGCCACCAGACAT
* * *
96002407 GCCCGTGTAGCCCAGCCGTGTGTCTCACACGGCCACCAGACAT
1 GCCCGTGTAGCACAGCCATGTGTCTCACACAGCCACCAGACAT
96002450 GCCCGTGT
1 GCCCGTGT
96002458 CACAAGCCGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.19, C:0.37, G:0.26, T:0.18
Consensus pattern (43 bp):
GCCCGTGTAGCACAGCCATGTGTCTCACACAGCCACCAGACAT
Found at i:96005487 original size:26 final size:26
Alignment explanation
Indices: 96005451--96005502 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
96005441 TACATGAAAA
96005451 ACTTGACATACATCTAATAG-ATGTTG
1 ACTTGACATACATCTAAT-GTATGTTG
96005477 ACTTGACATACATCTAATGTATGTTG
1 ACTTGACATACATCTAATGTATGTTG
96005503 TTACATCCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (26 bp):
ACTTGACATACATCTAATGTATGTTG
Found at i:96010935 original size:31 final size:31
Alignment explanation
Indices: 96010894--96010957 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
96010884 CCTTTTCATA
*
96010894 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
96010925 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
96010956 TT
1 TT
96010958 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:96011250 original size:23 final size:24
Alignment explanation
Indices: 96011151--96011363 Score: 326
Period size: 24 Copynumber: 9.0 Consensus size: 24
96011141 GCTTTATCAT
*
96011151 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
96011176 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
96011200 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
96011224 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
96011247 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
96011270 ATAACTGGGGCATAAACCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
96011294 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
96011318 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
96011341 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
96011364 GCACTTCCTC
Statistics
Matches: 176, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
23 67 0.38
24 97 0.55
25 12 0.07
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:96011277 original size:94 final size:94
Alignment explanation
Indices: 96011172--96011362 Score: 339
Period size: 94 Copynumber: 2.0 Consensus size: 94
96011162 CCTAGCCTCT
*
96011172 TTTAATAACTGGGGCA-AAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCA
1 TTTAATAACTGGGGCATAAA-CCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCA
96011236 TAAGCCCTTTAATAACTGGGGCATAAGCCC
65 TAAGCCCTTTAATAACTGGGGCATAAGCCC
* *
96011266 TTTAATAACTGGGGCATAAACCCTTTTGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAACCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCAT
96011331 AAGCCCTTTAATAACTGGGGCATAAGCCC
66 AAGCCCTTTAATAACTGGGGCATAAGCCC
96011360 TTT
1 TTT
96011363 TGCACTTCCT
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
94 90 0.97
95 3 0.03
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (94 bp):
TTTAATAACTGGGGCATAAACCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCAT
AAGCCCTTTAATAACTGGGGCATAAGCCC
Found at i:96011435 original size:9 final size:9
Alignment explanation
Indices: 96011421--96011477 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
96011411 ATCTCATGTG
96011421 CATATCATA
1 CATATCATA
*
96011430 CATATCATGTG
1 CATATCA--TA
96011441 CATATCATA
1 CATATCATA
* *
96011450 CATGTCATGTG
1 CATATCA--TA
96011461 CATATCATA
1 CATATCATA
96011470 CATATCAT
1 CATATCAT
96011478 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:96011437 original size:20 final size:20
Alignment explanation
Indices: 96011409--96011479 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
96011399 GCATTTATGA
*
96011409 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
96011429 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
96011449 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
96011469 ACATATCATGT
1 ACATATCATGT
96011480 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:96011444 original size:11 final size:11
Alignment explanation
Indices: 96011414--96011468 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
96011404 TATGAACATC
96011414 TCATGTGCATA
1 TCATGTGCATA
*
96011425 TCA--TACATA
1 TCATGTGCATA
96011434 TCATGTGCATA
1 TCATGTGCATA
* *
96011445 TCA--TACATG
1 TCATGTGCATA
96011454 TCATGTGCATA
1 TCATGTGCATA
96011465 TCAT
1 TCAT
96011469 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:96012763 original size:27 final size:27
Alignment explanation
Indices: 96012702--96012765 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
96012692 GGCATATTCG
*
96012702 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGA
* *
96012729 TCACTTTACCCTACAGGGGCT-TTACGA
1 TCATTTTACCATACAGGGG-TATTACGA
*
96012756 TCTTTTTACC
1 TCATTTTACC
96012766 TAATAGAGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:96012921 original size:27 final size:25
Alignment explanation
Indices: 96012796--96013074 Score: 121
Period size: 27 Copynumber: 10.3 Consensus size: 25
96012786 TTTCATCCTA
* * *
96012796 CAAGGGTGTTTTGGTAAATCTACAA-
1 CAAGGGTATTTTGGTAATTTTA-AAT
** *
96012821 CTAAGGGTATTTCAGTAATTTTGTAAAC
1 C-AAGGGTATTTTGGTAA-TTT-TAAAT
* **
96012849 CAATGGTATTTTTATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTT--AAA-T
96012878 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTT-TAAAT
*
96012905 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTT--AAAT
** * * *
96012932 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTT--TAAAT
* *
96012959 CAAGGGTATTTTGATAATTTTACAAA
1 CAAGGGTATTTTGGTAATTTTA-AAT
* *
96012985 CTAGGGGTATTTTGGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTA-AAT
*
96013012 CTAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTGGTAA-TTT-TAAAT
*** *
96013040 CAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATT-T-TAAAT
96013067 CAAGGGTA
1 CAAGGGTA
96013075 AAATAGTAAT
Statistics
Matches: 200, Mismatches: 35, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
25 3 0.01
26 23 0.12
27 139 0.69
28 15 0.08
29 18 0.09
30 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (25 bp):
CAAGGGTATTTTGGTAATTTTAAAT
Found at i:96012966 original size:54 final size:54
Alignment explanation
Indices: 96012796--96013033 Score: 226
Period size: 54 Copynumber: 4.4 Consensus size: 54
96012786 TTTCATCCTA
* * * * **
96012796 CAAGGGTGTTTTGGTAAATCTAC-AACTAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAAC
* ** * * * * ** *
96012849 CAATGGTATTTTTATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTTACAAAC
* * * *
96012905 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAAC
* * *
96012959 CAAGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAAC
* *
96013013 TAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
96013034 GTAAATCAAG
Statistics
Matches: 148, Mismatches: 34, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
53 13 0.09
54 87 0.59
55 12 0.08
56 36 0.24
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAAC
Found at i:96013044 original size:81 final size:79
Alignment explanation
Indices: 96012796--96013047 Score: 215
Period size: 81 Copynumber: 3.1 Consensus size: 79
96012786 TTTCATCCTA
* * * * ** ** * *
96012796 CAAGGGTGTTTTGGTAAATCTAC-AACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTT-GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTA-TT
96012860 TTA-TAATTTTTAGAAAGT
64 TTAGTAATTTTT--AAA-T
* * *
96012878 CAAGGGTATTTCTGTAACTTTGTA-AATC-AGGGGTATTTTGGTAATTTTACAAATTGAGGGTAT
1 CAAGGGTATTT-TGTAA-TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTAT
** ** *
96012941 TTCGGTAATTTCACAAAC
63 TTTAGTAATTT-TTAAAT
96012959 CAAGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
1 CAAGGGTATTTTG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
96013024 TAGTAATTTTGTAAAT
65 TAGTAATTTT-TAAAT
96013040 CAAGGGTA
1 CAAGGGTA
96013048 AAATAGTAAT
Statistics
Matches: 134, Mismatches: 26, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
79 2 0.01
80 8 0.06
81 67 0.50
82 20 0.15
83 33 0.25
84 4 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (79 bp):
CAAGGGTATTTTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
AGTAATTTTTAAAT
Found at i:96013074 original size:81 final size:81
Alignment explanation
Indices: 96012900--96013074 Score: 192
Period size: 81 Copynumber: 2.2 Consensus size: 81
96012890 TGTAACTTTG
* * *
96012900 TAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGG
1 TAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGG
** * *
96012965 TATTTTGATAATTTTA
66 TAAATAGATAATTCTA
* * *** *
96012981 CAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCAAGG
1 TAAATC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGG
96013045 GTAAAATAG-TAATTCTA
65 GT-AAATAGATAATTCTA
*
96013062 TAAATCAAGGGTA
1 TAAATCAGGGGTA
96013075 AAATAGTAAT
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
80 1 0.01
81 71 0.93
82 4 0.05
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.37
Consensus pattern (81 bp):
TAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGG
TAAATAGATAATTCTA
Found at i:96013166 original size:81 final size:81
Alignment explanation
Indices: 96013025--96013235 Score: 259
Period size: 81 Copynumber: 2.6 Consensus size: 81
96013015 AGGGTATTTT
* * * * * * *
96013025 AGTAATTTTGTAAATCAAGGGTAAAA-TAGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTA
1 AGTAATTATGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAAGAGTAATTATA
96013089 TAAATC-GAGGGTAAAAC
65 TAAATCAG-GGGTAAAAC
* * * *
96013106 TGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAGTCGAGGGTAAAACGA-TAATTATG
1 AGTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA-GAGTAATTATA
96013170 TAAATCAGGGGTAAAAC
65 TAAATCAGGGGTAAAAC
*
96013187 AGTAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 AGTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
96013236 CTTTGGTAAT
Statistics
Matches: 113, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
80 30 0.27
81 80 0.71
82 3 0.03
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
AGTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAGAGTAATTATAT
AAATCAGGGGTAAAAC
Found at i:96013218 original size:26 final size:27
Alignment explanation
Indices: 96013027--96013235 Score: 232
Period size: 27 Copynumber: 7.8 Consensus size: 27
96013017 GGTATTTTAG
* * *
96013027 TAATTTTGTAAATCAAGGGTAAAA-TA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* * *
96013053 GTAATTCTATAAATCAAGGGTAAAA-TA
1 -TAATTCTGTAAATCGAGGGTAAAACGA
*
96013080 GTAATTCTATAAATCGAGGGTAAAACTG-
1 -TAATTCTGTAAATCGAGGGTAAAAC-GA
96013108 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
96013135 TAATTCTGTAAGTCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
96013162 TAATTATGTAAATC-AGGGGTAAAAC-A
1 TAATTCTGTAAATCGA-GGGTAAAACGA
*
96013188 GTAATTATGTAAATCG-GGGTAAAACGA
1 -TAATTCTGTAAATCGAGGGTAAAACGA
*
96013215 TAATTCTGTAAATCGGGGGTA
1 TAATTCTGTAAATCGAGGGTA
96013236 CTTTGGTAAT
Statistics
Matches: 165, Mismatches: 9, Indels: 16
0.87 0.05 0.08
Matches are distributed among these distances:
26 26 0.16
27 139 0.84
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGA
Found at i:96013262 original size:27 final size:27
Alignment explanation
Indices: 96013241--96013330 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
96013231 GGGTACTTTG
*
96013241 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
96013268 GTAATTTTGCAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
96013295 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
96013322 GTAATTTTA
1 GTAATTTTA
96013331 GTAAACTAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.04
27 51 0.96
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:96013289 original size:54 final size:54
Alignment explanation
Indices: 96013215--96013329 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 54
96013205 GGTAAAACGA
* * * * *
96013215 TAATTCTGTAAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAG
1 TAATTTTGCAAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAG
* * *
96013269 TAATTTTGCAAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGG
1 TAATTTTGCAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAG
96013323 TAATTTT
1 TAATTTT
96013330 AGTAAACTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 6 0.12
54 45 0.88
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
TAATTTTGCAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAG
Found at i:96013289 original size:107 final size:107
Alignment explanation
Indices: 96013063--96013262 Score: 233
Period size: 107 Copynumber: 1.9 Consensus size: 107
96013053 GTAATTCTAT
* *
96013063 AAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACTGTAATTCTGTAAATCGAGGGT
1 AAATC-AGGGTAAAACAGTAATTATATAAATCGAGGGTAAAACTGTAATTCTGTAAATCGAGGGT
** * *
96013128 AAAACGATAATTCTGTAAGTCGAGGGTAAAACGATAATTATGT
65 AAAACGATAATTCTACAAGTCGAAGGTAAAACGATAATTATGC
* *
96013171 AAATCAGGGGTAAAACAGTAATTATGTAAATCG-GGGTAAAAC-GATAATTCTGTAAATCGGGGG
1 AAATCA-GGGTAAAACAGTAATTATATAAATCGAGGGTAAAACTG-TAATTCTGTAAATCGAGGG
**** * *
96013234 TACTTTGGTAATTTTACAAGTCGAAGGTA
64 TAAAACGATAATTCTACAAGTCGAAGGTA
96013263 TTTCAGTAAT
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
106 1 0.01
107 48 0.62
108 28 0.36
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (107 bp):
AAATCAGGGTAAAACAGTAATTATATAAATCGAGGGTAAAACTGTAATTCTGTAAATCGAGGGTA
AAACGATAATTCTACAAGTCGAAGGTAAAACGATAATTATGC
Found at i:96013337 original size:28 final size:28
Alignment explanation
Indices: 96013259--96013339 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 28
96013249 ACAAGTCGAA
*
96013259 GGTATTTCAGTAATTTT-GCAAA-TCGAG
1 GGTATTTCAGTAATTTTAGCAAACT-AAG
*
96013286 GGTATTTCAGTATTTTTA-CAAACTAAG
1 GGTATTTCAGTAATTTTAGCAAACTAAG
* *
96013313 GGTATTTCGGTAATTTTAGTAAACTAA
1 GGTATTTCAGTAATTTTAGCAAACTAA
96013340 AGTATTCTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
27 38 0.83
28 8 0.17
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (28 bp):
GGTATTTCAGTAATTTTAGCAAACTAAG
Found at i:96013344 original size:27 final size:27
Alignment explanation
Indices: 96013241--96013345 Score: 81
Period size: 27 Copynumber: 3.9 Consensus size: 27
96013231 GGGTACTTTG
* *
96013241 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
96013268 GTAATTTTGCAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
96013295 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
96013322 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
96013346 CTAAACATGG
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
26 2 0.03
27 53 0.84
28 8 0.13
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:96017267 original size:69 final size:69
Alignment explanation
Indices: 96017156--96017288 Score: 266
Period size: 69 Copynumber: 1.9 Consensus size: 69
96017146 TAGGGGTGTT
96017156 ACAATAAATGTTCAAATAATTCATTCTAGTGATAATTTAGCAGATCTTTTTACTAAGGCATTGTT
1 ACAATAAATGTTCAAATAATTCATTCTAGTGATAATTTAGCAGATCTTTTTACTAAGGCATTGTT
96017221 GAAA
66 GAAA
96017225 ACAATAAATGTTCAAATAATTCATTCTAGTGATAATTTAGCAGATCTTTTTACTAAGGCATTGT
1 ACAATAAATGTTCAAATAATTCATTCTAGTGATAATTTAGCAGATCTTTTTACTAAGGCATTGT
96017289 CAATTTCAAC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (69 bp):
ACAATAAATGTTCAAATAATTCATTCTAGTGATAATTTAGCAGATCTTTTTACTAAGGCATTGTT
GAAA
Found at i:96020091 original size:45 final size:45
Alignment explanation
Indices: 96020027--96020148 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 45
96020017 TAGGATATCG
*
96020027 ATATGTGTTTTCATGTAAGACCACATTTGGGAAGTCAGCATCAAT
1 ATATGTGTTTTCATGTAAGACCACATCTGGGAAGTCAGCATCAAT
** * * ** *
96020072 ATATGTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCATGTAAGACCACATCTGGGAAGTCAGCATCAAT
* * **
96020117 ATATGTGGTTACATGTAAGACCATGTCTGGGA
1 ATATGTGTTTTCATGTAAGACCACATCTGGGA
96020149 CATCGGCATC
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (45 bp):
ATATGTGTTTTCATGTAAGACCACATCTGGGAAGTCAGCATCAAT
Found at i:96020149 original size:45 final size:42
Alignment explanation
Indices: 96020085--96020240 Score: 129
Period size: 45 Copynumber: 3.7 Consensus size: 42
96020075 TGTGTTTTTG
* * *
96020085 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATAT-T-CGATT-CA
* * *
96020130 TGTAAGACCATGTCTGGGACATCGGCATCG-TATTCGATTCG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATTCGATTCA
* * ** *
96020171 TGTAAGACCCTGTCTGGGACAG-TGCCATCGATATGAGATAGCA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTCGAT-TCA
* *
96020214 TGTAAGACCACGTCTGGGA-TTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
96020241 TGTTTGATAT
Statistics
Matches: 89, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
41 26 0.29
42 14 0.16
43 19 0.21
44 3 0.03
45 27 0.30
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATATTCGATTCA
Found at i:96023547 original size:46 final size:46
Alignment explanation
Indices: 96023480--96023654 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
96023470 TGTAACCCGC
96023480 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
96023526 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
96023576 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
96023619 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
96023655 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:96023600 original size:93 final size:93
Alignment explanation
Indices: 96023488--96023658 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
96023478 GCCCATAAGT
** *
96023488 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96023553 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
96023581 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
96023646 CGAGTTCGGATGC
66 CGAGCTCGGATGC
96023659 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:96026638 original size:46 final size:44
Alignment explanation
Indices: 96026564--96026821 Score: 195
Period size: 46 Copynumber: 5.6 Consensus size: 44
96026554 GTTGATGCCG
* * *
96026564 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGATGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGATGCA
*
96026610 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
* *
96026654 TGTCCCAGACATGTCTGACACTGGCTAACATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA-GCCGATGCA
* * * * *
96026700 TGTCCCAGACATGTCTTACAGTGGCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTAGCACATC-T-C-GTAGCCGATGCA
* *
96026746 TGTCCCAGACATGACTTACACTAGC-CCTCGTC-TCAATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A-GCCGATG-CA
* *
96026793 TGTCCCATACATGGTCTTACACTGGCACA
1 TGTCCCAGACAT-GTCTTACACTAGCACA
96026822 CAAATCTCAT
Statistics
Matches: 174, Mismatches: 22, Indels: 29
0.77 0.10 0.13
Matches are distributed among these distances:
43 6 0.03
44 32 0.18
45 4 0.02
46 106 0.61
47 14 0.08
48 11 0.06
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.25
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
Found at i:96026787 original size:92 final size:91
Alignment explanation
Indices: 96026604--96026823 Score: 237
Period size: 92 Copynumber: 2.4 Consensus size: 91
96026594 TAACCGTGCT
* *
96026604 GATGCATGTCCCAGACATGTCTTACACTAG-CACATCTCGTAGCCGACGCATGTCCCAGACATGT
1 GATGCATGTCCCAGACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGA
* * *
96026668 CTGACACTGGCTAACATCTCGAGGCC
66 CTGACACTAGCCAACATCTCAAGGCC
* * * * *
96026694 GATGCATGTCCCAGACATGTCTTACAGTGGCTCTCATACT-GTGGCTGATGCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGC-CACAT-CTCGTAGCCGACGCATGTCCCAGACAT
* ** * *
96026758 GACTTACACTAGCCCTCGTCTCAATGCC
64 GACTGACACTAGCCAACATCTCAAGGCC
*
96026786 GATGCCATGTCCCATACATGGTCTTACACTGGCACACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC-CACA
96026824 AATCTCATGT
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
90 28 0.26
92 48 0.45
93 15 0.14
94 15 0.14
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGA
CTGACACTAGCCAACATCTCAAGGCC
Found at i:96029409 original size:46 final size:46
Alignment explanation
Indices: 96029342--96029516 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
96029332 TGTAACCCGC
96029342 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
96029388 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * * **
96029438 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
96029481 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
96029517 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:96029462 original size:93 final size:93
Alignment explanation
Indices: 96029350--96029520 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
96029340 GCCCATAAGT
**
96029350 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96029415 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
96029443 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
96029508 CGAGTTCGGATGC
66 CGAGCTCGGATGC
96029521 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:96031298 original size:31 final size:30
Alignment explanation
Indices: 96031251--96031311 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 30
96031241 TATTTTATTA
96031251 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
96031281 TTAATTTTTTTTATTATTTTAGAGGCATTTG
1 TTAA-TTTTGTTATTATTTTAAAGGCATTTG
96031312 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 4 0.14
31 24 0.86
ACGTcount: A:0.25, C:0.03, G:0.13, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:96033544 original size:21 final size:20
Alignment explanation
Indices: 96033520--96033558 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
96033510 GACTTAATCG
96033520 AAAACTCTAAGAATTTTTCGC
1 AAAACTCTAA-AATTTTTCGC
* *
96033541 AAAATTTTAAAATTTTTC
1 AAAACTCTAAAATTTTTC
96033559 CAAGGTGCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (20 bp):
AAAACTCTAAAATTTTTCGC
Found at i:96033619 original size:21 final size:22
Alignment explanation
Indices: 96033574--96033622 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
96033564 TGCAGGGCTC
* *
96033574 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCATGTGATCCAAGGG
*
96033596 ACACGCCCATGTGATCC-TGGG
1 ACACGCCCATGTGATCCAAGGG
96033617 ACACGC
1 ACACGC
96033623 TCGTGCTACA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.20, C:0.35, G:0.31, T:0.14
Consensus pattern (22 bp):
ACACGCCCATGTGATCCAAGGG
Found at i:96036321 original size:19 final size:20
Alignment explanation
Indices: 96036299--96036338 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
96036289 CAAGTCATTA
*
96036299 TTATTCCATCTCAAGA-TTC
1 TTATGCCATCTCAAGAGTTC
*
96036318 TTATGCCATGTCAAGAGTTC
1 TTATGCCATCTCAAGAGTTC
96036338 T
1 T
96036339 ATGTTAGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (20 bp):
TTATGCCATCTCAAGAGTTC
Found at i:96049713 original size:24 final size:25
Alignment explanation
Indices: 96049686--96049749 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
96049676 TCAACCAAAT
* * *
96049686 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
96049710 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
96049735 -CGCACACATAGTGCC
1 TCGCACACATAGTGCC
96049750 TGAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:96049800 original size:24 final size:24
Alignment explanation
Indices: 96049773--96049822 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
96049763 CATGCATCAA
96049773 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCTGCACACATAGTGC
* *
96049797 CATTTAATTCTGCACACATAGTGC
1 CATTCAAATCTGCACACATAGTGC
96049821 CA
1 CA
96049823 ATGTTAACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (24 bp):
CATTCAAATCTGCACACATAGTGC
Found at i:96049895 original size:94 final size:94
Alignment explanation
Indices: 96049778--96050153 Score: 698
Period size: 94 Copynumber: 4.0 Consensus size: 94
96049768 ATCAACATTC
* * *
96049778 AAATCTGCACACATAGTGCCATTTAATTCTGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
96049843 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
96049872 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
96049937 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
96049966 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
96050031 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
96050060 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAAAGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
96050125 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
96050154 CGGTCACATT
Statistics
Matches: 276, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 276 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:96053334 original size:40 final size:40
Alignment explanation
Indices: 96053227--96053394 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
96053217 CGGGATTTAA
* * * * *
96053227 CCGGATACAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * * * *
96053267 CCGGATTTGGTAATTTGCACCATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
96053307 CCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
96053347 CCGGACATAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
96053387 CCGGATAT
1 CCGGATAT
96053395 CATTCAAATG
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
40 100 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:96057067 original size:40 final size:40
Alignment explanation
Indices: 96057022--96057151 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
96057012 CGGAATACAA
96057022 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
96057062 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
96057102 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
96057142 CCGGATATAA
1 CCGGATATAA
96057152 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:96057166 original size:40 final size:40
Alignment explanation
Indices: 96057022--96057184 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
96057012 CGGAATACAA
* **
96057022 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
96057062 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
96057102 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
96057142 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
96057181 CCGG
1 CCGG
96057185 GTATCATTCA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:96064560 original size:37 final size:37
Alignment explanation
Indices: 96064465--96064611 Score: 145
Period size: 39 Copynumber: 3.9 Consensus size: 37
96064455 TACAACCACA
* * * *
96064465 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAATT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGA--T-ATAACT
*
96064505 TGCAC--ATGCCTTCGGGTCTTAGCCCGGATATAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACT
* * *
96064540 CGCACGAATGCCTTCGGGTCTTAGCCCGGAATAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG-AT-ATAACT
* *
96064579 AGCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
96064612 CATTCAAATG
Statistics
Matches: 92, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
35 8 0.09
36 1 0.01
37 24 0.26
38 25 0.27
39 30 0.33
40 4 0.04
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (37 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACT
Found at i:96069885 original size:29 final size:30
Alignment explanation
Indices: 96069852--96069917 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 30
96069842 TTATTCAAAC
* *
96069852 GGCCCATCT-GGCCCAGTTCATATTC-TCAT
1 GGCCCATCTGGGCCCAATTCACATTCAT-AT
96069881 GGCCCA-CTGGGCCCAATTCACATTCATAT
1 GGCCCATCTGGGCCCAATTCACATTCATAT
96069910 GGCCCATC
1 GGCCCATC
96069918 AAACGCAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 2 0.06
29 28 0.88
30 2 0.06
ACGTcount: A:0.20, C:0.36, G:0.18, T:0.26
Consensus pattern (30 bp):
GGCCCATCTGGGCCCAATTCACATTCATAT
Found at i:96070162 original size:8 final size:8
Alignment explanation
Indices: 96070149--96070199 Score: 66
Period size: 8 Copynumber: 6.4 Consensus size: 8
96070139 ATAGCCCAAC
96070149 TTTCGGCT
1 TTTCGGCT
*
96070157 TTTCGGCA
1 TTTCGGCT
**
96070165 TTTCAACT
1 TTTCGGCT
96070173 TTTCGGCT
1 TTTCGGCT
*
96070181 TTTCGGCA
1 TTTCGGCT
96070189 TTTCGGCT
1 TTTCGGCT
96070197 TTT
1 TTT
96070200 GTCGATTCAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.08, C:0.24, G:0.20, T:0.49
Consensus pattern (8 bp):
TTTCGGCT
Found at i:96070199 original size:24 final size:24
Alignment explanation
Indices: 96070145--96070192 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
96070135 TATCATAGCC
96070145 CAAC-TTTCGGCTTTTCGGCATTT
1 CAACTTTTCGGCTTTTCGGCATTT
96070168 CAACTTTTCGGCTTTTCGGCATTT
1 CAACTTTTCGGCTTTTCGGCATTT
96070192 C
1 C
96070193 GGCTTTTGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.12, C:0.27, G:0.17, T:0.44
Consensus pattern (24 bp):
CAACTTTTCGGCTTTTCGGCATTT
Found at i:96072931 original size:29 final size:29
Alignment explanation
Indices: 96072831--96072942 Score: 72
Period size: 29 Copynumber: 3.9 Consensus size: 29
96072821 ACCCCTATAT
* *
96072831 ACATGCATATGGCCCACTAGGCCCAA-TC
1 ACATTCATATAGCCCACTAGGCCCAATTC
** * * *
96072859 TTATTCAAAT-GACCCATCT-GGCCCAGTTT
1 ACATTCATATAG-CCCA-CTAGGCCCAATTC
* *
96072888 ATATTCTTA-AGGCCCACTAGGCCCAATTC
1 ACATTCATATA-GCCCACTAGGCCCAATTC
96072917 ACATTCATATAGCCCA-TCAGGCCCAA
1 ACATTCATATAGCCCACT-AGGCCCAA
96072943 ATCATATTAT
Statistics
Matches: 63, Mismatches: 13, Indels: 15
0.69 0.14 0.16
Matches are distributed among these distances:
27 1 0.02
28 19 0.30
29 41 0.65
30 2 0.03
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATAGCCCACTAGGCCCAATTC
Found at i:96072950 original size:58 final size:57
Alignment explanation
Indices: 96072841--96072950 Score: 132
Period size: 58 Copynumber: 1.9 Consensus size: 57
96072831 ACATGCATAT
** * ** *
96072841 GGCCCACTAGGCCCAATCTTATTCAAATGACCCATCTGGCCCAGTTTATATTCTTAA
1 GGCCCACTAGGCCCAATCACATTCAAATGACCCATCAGGCCCAAATCATATTCTTAA
*
96072898 GGCCCACTAGGCCCAATTCACATTCATAT-AGCCCATCAGGCCCAAATCATATT
1 GGCCCACTAGGCCCAA-TCACATTCAAATGA-CCCATCAGGCCCAAATCATATT
96072951 ATATTCATGC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
57 17 0.39
58 27 0.61
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (57 bp):
GGCCCACTAGGCCCAATCACATTCAAATGACCCATCAGGCCCAAATCATATTCTTAA
Found at i:96073193 original size:24 final size:24
Alignment explanation
Indices: 96073166--96073216 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
96073156 GCAACCCAAC
*
96073166 TTTCGACTTTTCGGCATTTCAGCT
1 TTTCCACTTTTCGGCATTTCAGCT
*
96073190 TTTCCACTTTTCGGCATTTCGGCT
1 TTTCCACTTTTCGGCATTTCAGCT
96073214 TTT
1 TTT
96073217 GCCAATTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.10, C:0.25, G:0.16, T:0.49
Consensus pattern (24 bp):
TTTCCACTTTTCGGCATTTCAGCT
Found at i:96079912 original size:40 final size:40
Alignment explanation
Indices: 96079860--96080021 Score: 209
Period size: 40 Copynumber: 4.0 Consensus size: 40
96079850 GGATTTAGCA
* *
96079860 GGATATAACAACTCGCATAAATGCCTTCGGGTCTTAGCCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
96079900 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* * * * *
96079940 GGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCC
1 GGATAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* * * *
96079980 GGATATAGCAACTCACACGAATGCCTTCGGATCTTAGTCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
96080020 GG
1 GG
96080022 TTATCATCCG
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 100 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
Found at i:96079958 original size:80 final size:80
Alignment explanation
Indices: 96079860--96080021 Score: 245
Period size: 80 Copynumber: 2.0 Consensus size: 80
96079850 GGATTTAGCA
* * * *
96079860 GGATATAACAACTCGCATAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCC
1 GGATATAACAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCACACAAATGCC
*
96079925 TTCGGGTCTTAGCCC
66 TTCGGATCTTAGCCC
*
96079940 GGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCACACGAATGC
1 GGATATAA-CAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCACACAAATGC
*
96080004 CTTCGGATCTTAGTCC
65 CTTCGGATCTTAGCCC
96080020 GG
1 GG
96080022 TTATCATCCG
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
80 73 0.99
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (80 bp):
GGATATAACAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCACACAAATGCC
TTCGGATCTTAGCCC
Found at i:96086265 original size:40 final size:40
Alignment explanation
Indices: 96086207--96086504 Score: 431
Period size: 40 Copynumber: 7.5 Consensus size: 40
96086197 TGGATGATAA
* * *
96086207 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* * *
96086247 CCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
96086287 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
96086327 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
96086367 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
96086407 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
96086447 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
96086487 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
96086505 TACTAGGCTT
Statistics
Matches: 237, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 16 0.07
40 221 0.93
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:96089815 original size:37 final size:37
Alignment explanation
Indices: 96089765--96089855 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
96089755 TTATTACGAA
96089765 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
96089802 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
96089839 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
96089856 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:96090051 original size:49 final size:49
Alignment explanation
Indices: 96089942--96090189 Score: 441
Period size: 49 Copynumber: 5.1 Consensus size: 49
96089932 CACACATATA
96089942 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
96089989 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
96090038 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
96090087 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
96090134 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
96090183 TTTCACA
1 TTTCACA
96090190 GCCTTATCAC
Statistics
Matches: 192, Mismatches: 5, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
47 81 0.42
49 111 0.58
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
Found at i:96090052 original size:96 final size:97
Alignment explanation
Indices: 96089942--96090189 Score: 430
Period size: 96 Copynumber: 2.6 Consensus size: 97
96089932 CACACATATA
96089942 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACAT
*
96090006 TGGCCATTAGGCCTTATCACATATATATACAC
66 CGGCCATTAGGCCTTATCACATATATATACAC
*
96090038 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACA
96090103 TCGGCCATTAGGCCTTATCAC--ATATATACAC
65 TCGGCCATTAGGCCTTATCACATATATATACAC
*
96090134 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACA
96090190 GCCTTATCAC
Statistics
Matches: 146, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
96 101 0.69
98 45 0.31
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (97 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATATACAC
Found at i:96090195 original size:29 final size:29
Alignment explanation
Indices: 96090161--96090218 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
96090151 TGGCCATTAG
96090161 GCCTTATCACATATATATACACTTTCACA
1 GCCTTATCACATATATATACACTTTCACA
96090190 GCCTTATCACATATATATACACTTTCACA
1 GCCTTATCACATATATATACACTTTCACA
96090219 TTCATCACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.34
Consensus pattern (29 bp):
GCCTTATCACATATATATACACTTTCACA
Found at i:96090212 original size:78 final size:74
Alignment explanation
Indices: 96090114--96090265 Score: 259
Period size: 78 Copynumber: 2.0 Consensus size: 74
96090104 CGGCCATTAG
*
96090114 GCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
96090179 ACACTTTCACA
64 ACACTTTCACA
96090190 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
96090255 ACACTTTCACA
64 ACACTTTCACA
96090266 TTCATCACAT
Statistics
Matches: 73, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
76 27 0.37
78 46 0.63
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (74 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACA
Found at i:96090225 original size:27 final size:27
Alignment explanation
Indices: 96090163--96090228 Score: 98
Period size: 29 Copynumber: 2.4 Consensus size: 27
96090153 GCCATTAGGC
96090163 CTTATCACATATATATACACTTTCACA
1 CTTATCACATATATATACACTTTCACA
96090190 GCCTTATCACATATATATACACTTTCACA
1 --CTTATCACATATATATACACTTTCACA
96090219 -TTCATCACAT
1 CTT-ATCACAT
96090229 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
26 2 0.06
27 7 0.19
29 27 0.75
ACGTcount: A:0.35, C:0.27, G:0.02, T:0.36
Consensus pattern (27 bp):
CTTATCACATATATATACACTTTCACA
Found at i:96090304 original size:96 final size:96
Alignment explanation
Indices: 96090190--96090496 Score: 578
Period size: 96 Copynumber: 3.2 Consensus size: 96
96090180 CACTTTCACA
96090190 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
96090255 ACACTTTCACATTCATCACATTGGCCATTAG
66 ACACTTTCACATTCATCACATTGGCCATTAG
96090286 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
96090351 ACACTTTCACATTCATCACATTGGCCATTAG
66 ACACTTTCACATTCATCACATTGGCCATTAG
*
96090382 GCCTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATAT
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
96090447 ACACACTTTCACATTCATCACATCGGCCATTAG
66 --ACACTTTCACATTCATCACATTGGCCATTAG
96090480 GCCTTATCACATATATA
1 GCCTTATCACATATATA
96090497 CATCTCATAC
Statistics
Matches: 207, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
96 160 0.77
98 47 0.23
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (96 bp):
GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
ACACTTTCACATTCATCACATTGGCCATTAG
Found at i:96090439 original size:145 final size:143
Alignment explanation
Indices: 96090190--96090498 Score: 546
Period size: 145 Copynumber: 2.1 Consensus size: 143
96090180 CACTTTCACA
96090190 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
* *
96090255 ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCAT
96090320 CACATCGGCCATTAG
129 CACATCGGCCATTAG
*
96090335 GCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
96090400 ACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCAT
96090465 CACATCGGCCATTAG
129 CACATCGGCCATTAG
96090480 GCCTTATCACATATATACA
1 GCCTTATCACATATATACA
96090499 TCTCATACAT
Statistics
Matches: 158, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
143 46 0.29
145 112 0.71
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (143 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCA
CATCGGCCATTAG
Found at i:96090498 original size:49 final size:49
Alignment explanation
Indices: 96090190--96090496 Score: 550
Period size: 49 Copynumber: 6.3 Consensus size: 49
96090180 CACTTTCACA
96090190 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
*
96090239 GCCTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAG
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
96090286 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
*
96090335 GCCTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAG
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
*
96090382 GCCTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAG
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
*
96090431 GCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAG
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
96090480 GCCTTATCACATATATA
1 GCCTTATCACATATATA
96090497 CATCTCATAC
Statistics
Matches: 247, Mismatches: 7, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
47 92 0.37
49 155 0.63
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
Found at i:96094842 original size:29 final size:29
Alignment explanation
Indices: 96094779--96094886 Score: 116
Period size: 29 Copynumber: 3.8 Consensus size: 29
96094769 TTCACATACC
*
96094779 TGTATTTGGCCCATTTA-GCCC-AATCA-T
1 TGTATATGGCCCA-TTAGGCCCAAATCACT
*
96094806 ATTTATATGGCCCATTAGGCCCAAATCACT
1 -TGTATATGGCCCATTAGGCCCAAATCACT
* *
96094836 TGTATATGGCCCATTAGACCCAAATAACAT
1 TGTATATGGCCCATTAGGCCCAAATCAC-T
*
96094866 T-TATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
96094887 GTCACACATA
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
27 3 0.04
28 15 0.22
29 48 0.70
30 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACT
Done.