Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 31 of 433
Found at i:8020127 original size:95 final size:96
Alignment explanation
Indices: 8019952--8020177 Score: 241
Period size: 95 Copynumber: 2.4 Consensus size: 96
8019942 AAACATAAGG
* * * * * *
8019952 TATAATACTGATGCCATGTCCCAGATATAGTCTTACACT-G-GCTCATC-TAT-CAAGTCGATGC
1 TATAATGCCGATGCCATGTCCCAGACATGGTCGTACACTAGCTCTCA-CATATCCAAGTCGATGC
* *
8020013 CATGTCCCAAACATGGTCTTATACTGACACATC
65 CATGTCCCAAACATAGTCTTACACTGACAC-TC
* *
8020046 TCAT-A-GCCGATG-CATGTCCTAGACATGGTCGTACACTAGCTCTCACATATCCAAGTCGATGG
1 T-ATAATGCCGATGCCATGTCCCAGACATGGTCGTACACTAGCTCTCACATATCCAAGTCGATGC
* *
8020108 CATGTCTCAGACATAGTCTTACACTGACACTC
65 CATGTCCCAAACATAGTCTTACACTGACACTC
* *
8020140 TATACATGTCGATGCCATGTCCCAGACATGGTCTTACA
1 TATA-ATGCCGATGCCATGTCCCAGACATGGTCGTACA
8020178 TTGACACATC
Statistics
Matches: 108, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
92 21 0.19
93 9 0.08
94 12 0.11
95 39 0.36
96 6 0.06
97 21 0.19
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (96 bp):
TATAATGCCGATGCCATGTCCCAGACATGGTCGTACACTAGCTCTCACATATCCAAGTCGATGCC
ATGTCCCAAACATAGTCTTACACTGACACTC
Found at i:8033302 original size:40 final size:39
Alignment explanation
Indices: 8033196--8033345 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
8033186 ATCACGATTT
*
8033196 GCACAAATGCCTTCGGGTCTTAGCCC-GATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
8033235 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * * ** *
8033275 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
8033315 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
8033346 TCATTCAATT
Statistics
Matches: 90, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
38 1 0.01
39 29 0.32
40 59 0.66
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:8037717 original size:40 final size:40
Alignment explanation
Indices: 8037643--8037788 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
8037633 CCGCACCAAG
* * * * * *
8037643 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
8037683 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
8037723 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
8037763 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
8037789 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:8037803 original size:40 final size:40
Alignment explanation
Indices: 8037675--8037826 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
8037665 ATCACGATTT
* * * **
8037675 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
8037715 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
8037755 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
8037795 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
8037827 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:8040928 original size:28 final size:27
Alignment explanation
Indices: 8040883--8040999 Score: 137
Period size: 28 Copynumber: 4.3 Consensus size: 27
8040873 AGCATGGCTG
*
8040883 CCAGAACAGAT-ATTGTGACAGAGTCA
1 CCAGAACAGATAATTGTGACAGAGCCA
*
8040909 CCAGATACAGATAATTGTGACAGGGCCA
1 CCAGA-ACAGATAATTGTGACAGAGCCA
* * *
8040937 CCAGAAATAGATATTTGTGGCAGAGCCA
1 CCAG-AACAGATAATTGTGACAGAGCCA
* * *
8040965 CCAGAACAAATAGTTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGACAGAGCCA
8040992 CCAGAACA
1 CCAGAACA
8041000 CTTCCTCCAT
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.06
27 34 0.43
28 39 0.49
29 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGACAGAGCCA
Found at i:8040992 original size:55 final size:55
Alignment explanation
Indices: 8040890--8040997 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 55
8040880 CTGCCAGAAC
* * *
8040890 AGATATTGTGACAGAGTCACCAGATACAGATAATTGTGACAGGGCCACCAGAAAT
1 AGATATTGTGACAGAGCCACCAGATACAAATAATTGTGACAGAGCCACCAGAAAT
* * *
8040945 AGATATTTGTGGCAGAGCCACCAGA-ACAAATAGTTGTGGCAGAGCCACCAGAA
1 AGATA-TTGTGACAGAGCCACCAGATACAAATAATTGTGACAGAGCCACCAGAA
8040998 CACTTCCTCC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 29 0.63
56 17 0.37
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (55 bp):
AGATATTGTGACAGAGCCACCAGATACAAATAATTGTGACAGAGCCACCAGAAAT
Found at i:8041161 original size:26 final size:25
Alignment explanation
Indices: 8041104--8041162 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
8041094 ATCAACCCTA
* *
8041104 AGGGTATAATGGTCATTTTGCATCT
1 AGGGTATAATGGTAACTTTGCATCT
8041129 AGAGGTATAATGGTAACTTT-CATACTT
1 AG-GGTATAATGGTAACTTTGCAT-C-T
8041156 AGGGTAT
1 AGGGTAT
8041163 TTTAGTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 5 0.17
26 21 0.72
27 3 0.10
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (25 bp):
AGGGTATAATGGTAACTTTGCATCT
Found at i:8044134 original size:53 final size:54
Alignment explanation
Indices: 8044030--8044174 Score: 170
Period size: 53 Copynumber: 2.7 Consensus size: 54
8044020 CGGATTACAT
* * * *
8044030 ATCATACCGATGCCATATCCCAGATATGGTCTTATAC-GGAATCACATTATCAC
1 ATCATACCGATGCCATAACCCAGCTATGGTCTTATACGGGAATAACAGTATCAC
* *
8044083 ATCACACCGATGCCATAACCCAGCTATGGTCTTATACGGGAA-AAGC-GTATCAT
1 ATCATACCGATGCCATAACCCAGCTATGGTCTTATACGGGAATAA-CAGTATCAC
** * *
8044136 ATTGTACCGATGCCATAGCCCGGCTATGGTCTTATACGG
1 ATCATACCGATGCCATAACCCAGCTATGGTCTTATACGG
8044175 AAACATATAT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 74 0.94
54 5 0.06
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (54 bp):
ATCATACCGATGCCATAACCCAGCTATGGTCTTATACGGGAATAACAGTATCAC
Found at i:8051321 original size:61 final size:61
Alignment explanation
Indices: 8051202--8051322 Score: 156
Period size: 60 Copynumber: 2.0 Consensus size: 61
8051192 CTATTCAAAA
* * *
8051202 ATCAGAGTTAACTGGGCTTTAGCCCATATCAATATTAATCTAGGCCATAGCCCCTTACAAT
1 ATCAGAGTTAACTGGGCTTTAGCCCATATCAATATCAATCTAGGCCATAACCCATTACAAT
* * *
8051263 ATCAGAG-TATACTGGGC-TTAGCCCATGTCAGTATCAATCTAGGCCGTAACCCTATTACAA
1 ATCAGAGTTA-ACTGGGCTTTAGCCCATATCAATATCAATCTAGGCCATAACCC-ATTACAA
8051323 GTCCAGATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
60 32 0.62
61 20 0.38
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (61 bp):
ATCAGAGTTAACTGGGCTTTAGCCCATATCAATATCAATCTAGGCCATAACCCATTACAAT
Found at i:8052020 original size:16 final size:15
Alignment explanation
Indices: 8051999--8052028 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8051989 GAAATGCCGA
8051999 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
8052015 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
8052029 CTGATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:8054393 original size:21 final size:21
Alignment explanation
Indices: 8054367--8054409 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8054357 AAGGTCACAC
8054367 CCTATGGTTAAAGTGAACAGA
1 CCTATGGTTAAAGTGAACAGA
8054388 CCTATGGTTAAAGTGAACAGA
1 CCTATGGTTAAAGTGAACAGA
8054409 C
1 C
8054410 TTCACGCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.23
Consensus pattern (21 bp):
CCTATGGTTAAAGTGAACAGA
Found at i:8060731 original size:21 final size:21
Alignment explanation
Indices: 8060707--8060761 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
8060697 ATGAACTTTA
8060707 CATTTTAGATCAAGATATGCC
1 CATTTTAGATCAAGATATGCC
8060728 CATTTTAGATCAAGATATGCC
1 CATTTTAGATCAAGATATGCC
8060749 CATTTTAGATCAA
1 CATTTTAGATCAA
8060762 ACTTATCTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.35
Consensus pattern (21 bp):
CATTTTAGATCAAGATATGCC
Found at i:8061036 original size:35 final size:35
Alignment explanation
Indices: 8060991--8061060 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
8060981 CAGGCCAAGG
*
8060991 AAGGTTTTCAATACTTTATTACTTTCACTAATGAC
1 AAGGTTTTCAATACTTCATTACTTTCACTAATGAC
8061026 AAGGTTTTCAATACTTCATTACTTTCACTAATGAC
1 AAGGTTTTCAATACTTCATTACTTTCACTAATGAC
8061061 TTCGGTAGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (35 bp):
AAGGTTTTCAATACTTCATTACTTTCACTAATGAC
Found at i:8064950 original size:343 final size:341
Alignment explanation
Indices: 8064230--8065021 Score: 1101
Period size: 343 Copynumber: 2.3 Consensus size: 341
8064220 ATCATGACTT
* * * * *
8064230 CTTGTAACATTATAAATGTTCTAGTATTACTACCAACATTAAAAGAACCTACAGGGTCACACCCT
1 CTTGAAACATTAGAAATGTTCTAGTATTACTACCAACGTTACAAGAACCTACAAGGTCACACCCT
** * * *
8064295 ATGGTTAAAGCAAACAGACTTCACACCAATAGAATAACCATGCTCAAATAAGTTGATATGATATA
66 ATGGTTAAAGC-AACAGACTTCACACCAATAGAATGGCCATACTCAAATAAGTTGATATAAGATA
* *
8064360 TCACACTTATTTTTTTTTATTGTAGTCTACTCAAAATATCAAAAAATATGAGATTGGACTATACA
130 TCACACTAATTTTTTTTTATTGTAGTCTACTCAAAATATCAAAAAATATAAGATTGGACTATACA
* *
8064425 AATGTGACTATACCATGGCTATTTCCAATTTAGACATAAAGGATAAAATGATATAATACATGAAA
195 AATGTGACTATACCATGACTATTTCCAATTTAGACATAAAGGATAAAATGATATAATAAATGAAA
*
8064490 AGTTTATCACAAAAAGGTTATGCCAAATCATGACTTCTTGTAACTTGGGTAGGAATGATGCATTG
260 AGTTTATCACAAAAAGGTTATGCCAAATCATGACTTCTTGTAACTTGGGTAGCAATGATGCATTG
8064555 CTAGACGCCACTCATTA
325 CTAGACGCCACTCATTA
* *
8064572 CTTGAAACATTAGAAATGTTATAGTTTTACTACCAACGTTACAAGAACCTACAAGGTCACACCCT
1 CTTGAAACATTAGAAATGTTCTAGTATTACTACCAACGTTACAAGAACCTACAAGGTCACACCCT
*
8064637 ATGGTTAAAGCGAACAGACTTCACACCAATATAATGGCCATACTCAAATAAGTTGATATAAGATA
66 ATGGTTAAAGC-AACAGACTTCACACCAATAGAATGGCCATACTCAAATAAGTTGATATAAGATA
* * * * *
8064702 -C-CA-TAACTTTTTTGTTTATTGTAGTCTATTCAGAATATTAAGAAATATAAGATTGGACTCTA
130 TCACACTAA-TTTTTT-TTTATTGTAGTCTACTCAAAATATCAAAAAATATAAGATTGGACTATA
* * * * *
8064764 CAAGTGTGACTATACCATGACTTGTTTCCAATTTAGATATAAATGATAAAA-GTATATTATAAAA
193 CAAATGTGACTATACCATGAC-TATTTCCAATTTAGACATAAAGGATAAAATG-ATATAAT-AAA
* * *
8064828 TGAAATA-TTTATCACAAAAAGGTTATGTCGAATCACT-ATTTCTTGTAACTTGGGTAGCAATGA
255 TGAAA-AGTTTATCACAAAAAGGTTATGCCAAATCA-TGACTTCTTGTAACTTGGGTAGCAATGA
* *
8064891 TGTATTGCTAGACGCCACTCATTG
318 TGCATTGCTAGACGCCACTCATTA
* * *
8064915 CTTGAAACATTAGAAATGTTCTAGTATTACTACCAATGTTACAAGAACCTACAAGATCATACCCT
1 CTTGAAACATTAGAAATGTTCTAGTATTACTACCAACGTTACAAGAACCTACAAGGTCACACCCT
* * *
8064980 ATGGTTAAAAACAATAGACTTCACACCAATAGAATGGGCATA
66 ATGGTT-AAAGCAACAGACTTCACACCAATAGAATGGCCATA
8065022 TACCATCCCA
Statistics
Matches: 399, Mismatches: 43, Indels: 15
0.87 0.09 0.03
Matches are distributed among these distances:
339 2 0.01
340 8 0.02
341 63 0.16
342 148 0.37
343 172 0.43
344 6 0.02
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (341 bp):
CTTGAAACATTAGAAATGTTCTAGTATTACTACCAACGTTACAAGAACCTACAAGGTCACACCCT
ATGGTTAAAGCAACAGACTTCACACCAATAGAATGGCCATACTCAAATAAGTTGATATAAGATAT
CACACTAATTTTTTTTTATTGTAGTCTACTCAAAATATCAAAAAATATAAGATTGGACTATACAA
ATGTGACTATACCATGACTATTTCCAATTTAGACATAAAGGATAAAATGATATAATAAATGAAAA
GTTTATCACAAAAAGGTTATGCCAAATCATGACTTCTTGTAACTTGGGTAGCAATGATGCATTGC
TAGACGCCACTCATTA
Found at i:8073995 original size:47 final size:47
Alignment explanation
Indices: 8073855--8074172 Score: 208
Period size: 47 Copynumber: 6.7 Consensus size: 47
8073845 AATTTCTTGT
* * * *
8073855 GTGCCAGTGTAAGACACGTCTGCGACATGCATCGACCAT--ATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGATGATGA
* * * * * *
8073901 GTGTCAGTATAAGACCGTGTCTGGGATATGGCATCGGCATAGA-GATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
8073949 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* * *
8073996 -TAGCCAGTGTAAGACGTGTCTGGGACATGCATCGG-CT--AAGA-GTC
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATG-A
* * * * *
8074040 GTGCTAGTGTAAAACATGT-TCGGGACATGCATCAG-CACGTATATATGA
1 GTGCCAGTGTAAGACATGTCT-GGGACATGCATCGGCCTCG-AT-GATGA
* * * * *
8074088 GAGCTAGTATAAGACCATGTCTAGGACATGGTATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
* * *
8074137 -TAGCCTGTGTGAGACTATATCTGGGACATGGCATCG
1 GT-GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCG
8074173 TTAACTTATC
Statistics
Matches: 210, Mismatches: 42, Indels: 37
0.73 0.15 0.13
Matches are distributed among these distances:
43 2 0.01
44 31 0.15
45 1 0.00
46 26 0.12
47 61 0.29
48 36 0.17
49 42 0.20
50 8 0.04
51 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
Found at i:8074016 original size:94 final size:91
Alignment explanation
Indices: 8073855--8074117 Score: 250
Period size: 94 Copynumber: 2.8 Consensus size: 91
8073845 AATTTCTTGT
* * * *
8073855 GTGCCAGTGTAAGACACGTCTGCGACATGCATCGACCATATTATGAGTGTCAGTATAAGACCGTG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCATATGATGAGTGCCAGTATAAGACCGTG
*
8073920 TCTGGGATATGGCATCGGC-ATAGAGATGA
66 TCTGGGACAT-GCATCGGCTA-AGAG-T-A
* *
8073949 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGATGATGA-TAGCCAGTGTAAGA-C
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCAT--ATGATGAGT-GCCAGTATAAGACC
*
8074011 GTGTCTGGGACATGCATCGGCTAAGAGTC
63 GTGTCTGGGACATGCATCGGCTAAGAGTA
* * * * *
8074040 GTGCTAGTGTAAAACATGT-TCGGGACATGCATCAGCACGTATAT-ATGAGAGCTAGTATAAGAC
1 GTGCCAGTGTAAGACATGTCT-GGGACATGCATC-G-AC-CATATGATGAGTGCCAGTATAAGAC
* *
8074103 CATGTCTAGGACATG
62 CGTGTCTGGGACATG
8074118 GTATCGGCCT
Statistics
Matches: 141, Mismatches: 17, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
90 1 0.01
91 29 0.21
92 16 0.11
93 29 0.21
94 49 0.35
95 17 0.12
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (91 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCATATGATGAGTGCCAGTATAAGACCGTG
TCTGGGACATGCATCGGCTAAGAGTA
Found at i:8075018 original size:55 final size:55
Alignment explanation
Indices: 8074934--8075064 Score: 165
Period size: 55 Copynumber: 2.4 Consensus size: 55
8074924 GCACTTAAAA
* * * * *
8074934 TTTT-AAGTCAGTTTAGTATACGGGTAGGCCACACGGGCATGTGTCATGGTCGTG
1 TTTTAAAGTCAGTTTTGTACACGGGCAGGCCACACGAGCATGTGTCATGGCCGTG
**
8074988 TTTTAAAGTCAGTTTTGTACACGGGCAGGCCACACGAGTGTGTGTCATGGCCGTG
1 TTTTAAAGTCAGTTTTGTACACGGGCAGGCCACACGAGCATGTGTCATGGCCGTG
* * *
8075043 TTTTAAAATCAGTGTTGCACAC
1 TTTTAAAGTCAGTTTTGTACAC
8075065 AGGCTAAAGG
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
54 4 0.06
55 62 0.94
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31
Consensus pattern (55 bp):
TTTTAAAGTCAGTTTTGTACACGGGCAGGCCACACGAGCATGTGTCATGGCCGTG
Found at i:8078395 original size:21 final size:21
Alignment explanation
Indices: 8078354--8078396 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
8078344 TAGAAAATAG
8078354 GTACTCGTATGCCTACTTTTT
1 GTACTCGTATGCCTACTTTTT
8078375 GTACGTCGTATGCCTACTTTTT
1 GTAC-TCGTATGCCTACTTTTT
8078397 TTGAAACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.14, C:0.23, G:0.16, T:0.47
Consensus pattern (21 bp):
GTACTCGTATGCCTACTTTTT
Found at i:8080323 original size:39 final size:39
Alignment explanation
Indices: 8080269--8080345 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
8080259 TTTGTGCCGG
8080269 TAGACTCATAACTGATAATGTGTTGTTGACGTATGAGGC
1 TAGACTCATAACTGATAATGTGTTGTTGACGTATGAGGC
*
8080308 TAGACTCATAACTGATAATGTGTTGTTGGCGTATGAGG
1 TAGACTCATAACTGATAATGTGTTGTTGACGTATGAGG
8080346 TTCTCCATTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (39 bp):
TAGACTCATAACTGATAATGTGTTGTTGACGTATGAGGC
Found at i:8081293 original size:32 final size:32
Alignment explanation
Indices: 8081252--8081318 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
8081242 TTTCACAGTT
8081252 TAAACTTGTTTAATATTGCGTTACTGGCCAAA
1 TAAACTTGTTTAATATTGCGTTACTGGCCAAA
8081284 TAAACTTGTTTAATATTGCGTTACTGGCCAAA
1 TAAACTTGTTTAATATTGCGTTACTGGCCAAA
8081316 TAA
1 TAA
8081319 GGTTGGCGTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (32 bp):
TAAACTTGTTTAATATTGCGTTACTGGCCAAA
Found at i:8083854 original size:17 final size:17
Alignment explanation
Indices: 8083832--8083864 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8083822 TAGGATTAGG
*
8083832 GCCACATGGGCATGTGA
1 GCCACATGGCCATGTGA
8083849 GCCACATGGCCATGTG
1 GCCACATGGCCATGTG
8083865 CTACTGTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (17 bp):
GCCACATGGCCATGTGA
Found at i:8086979 original size:59 final size:59
Alignment explanation
Indices: 8086879--8087008 Score: 172
Period size: 59 Copynumber: 2.2 Consensus size: 59
8086869 AGTATTCTAA
* * *
8086879 GAATCGAACCCAAAAGAGTCAGCGATTTAATGATTTATTCTCGACAAGCATGCAATGAAG
1 GAATCGAA-CTAAAAGAGTCAGCGATTTAATAATTCATTCTCGACAAGCATGCAATGAAG
* *
8086939 GAATCGAACTAAAAGGAGTCAGC-ATTTAATAATTCCTTCTCGACAAGCATGGAATGAAG
1 GAATCGAACTAAAA-GAGTCAGCGATTTAATAATTCATTCTCGACAAGCATGCAATGAAG
* *
8086998 GAGTCTAACTA
1 GAATCGAACTA
8087009 GCTACTCACT
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
59 46 0.74
60 16 0.26
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (59 bp):
GAATCGAACTAAAAGAGTCAGCGATTTAATAATTCATTCTCGACAAGCATGCAATGAAG
Found at i:8089294 original size:31 final size:32
Alignment explanation
Indices: 8089238--8089297 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
8089228 AACAGTCCAT
*
8089238 TGACTTAAAATAAAAACTTTCAAATAGTTTAG
1 TGACTTAAAATAAAAACTTTAAAATAGTTTAG
* *
8089270 TGACTT-AAATGAATACTTTAAAATAGTT
1 TGACTTAAAATAAAAACTTTAAAATAGTT
8089298 CAATAACCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 19 0.76
32 6 0.24
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (32 bp):
TGACTTAAAATAAAAACTTTAAAATAGTTTAG
Found at i:8089986 original size:7 final size:7
Alignment explanation
Indices: 8089974--8090002 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
8089964 GGAATGGACC
8089974 CTTCCCA
1 CTTCCCA
8089981 CTTCCCA
1 CTTCCCA
8089988 CTTCCCA
1 CTTCCCA
8089995 CTTCCCA
1 CTTCCCA
8090002 C
1 C
8090003 CTACATAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.59, G:0.00, T:0.28
Consensus pattern (7 bp):
CTTCCCA
Found at i:8091711 original size:2 final size:2
Alignment explanation
Indices: 8091704--8091751 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
8091694 GTTGTTCTCT
8091704 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
8091746 CA TA TA
1 TA TA TA
8091752 CATACTTACA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8095481 original size:189 final size:188
Alignment explanation
Indices: 8095157--8095536 Score: 724
Period size: 189 Copynumber: 2.0 Consensus size: 188
8095147 AAACTCTATA
*
8095157 CTTTCGATTCATTCATCATATTCACTTTTTATATCGATTCTATAGTGTTTCTGAAAATTATGAGG
1 CTTTCGATTCATTCATCATATTCACTTTTTATATCGATTCTATAGTGTTTCTGAAAACTATGAGG
8095222 AACCAATCCCTCTATGGAGGAATAGCGAGTGAAGGTATGAGCTATTAACCCTAGGCTTGATGACC
66 AACCAATCCCTCTATGGAGGAATAGCGAGTGAAGGTATGAGCTATTAACCCTAGGCTTGATGACC
8095287 CTAGGAAGTCATCAAGGTGGGAATTAACCCATAATTGGTATGGCTTATTCGTGAACAC
131 CTAGGAAGTCATCAAGGTGGGAATTAACCCATAATTGGTATGGCTTATTCGTGAACAC
8095345 CTTTACGATTCATTCATCATATTCACTTTTTATATCGATTCTATAGTGTTTCTGAAAACTATGAG
1 CTTT-CGATTCATTCATCATATTCACTTTTTATATCGATTCTATAGTGTTTCTGAAAACTATGAG
* *
8095410 GAACCAATCCCTCTATGGAGGATTAGGGAGTGAAGGTATGAGCTATTAACCCTAGGCTTGATGAC
65 GAACCAATCCCTCTATGGAGGAATAGCGAGTGAAGGTATGAGCTATTAACCCTAGGCTTGATGAC
8095475 CCTAGGAAGTCATCAAGGTGGGAATTAACCCATAATTGGTATGGCTTATTCGTGAACAC
130 CCTAGGAAGTCATCAAGGTGGGAATTAACCCATAATTGGTATGGCTTATTCGTGAACAC
8095534 CTT
1 CTT
8095537 CACCCTAAGC
Statistics
Matches: 188, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
188 4 0.02
189 184 0.98
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (188 bp):
CTTTCGATTCATTCATCATATTCACTTTTTATATCGATTCTATAGTGTTTCTGAAAACTATGAGG
AACCAATCCCTCTATGGAGGAATAGCGAGTGAAGGTATGAGCTATTAACCCTAGGCTTGATGACC
CTAGGAAGTCATCAAGGTGGGAATTAACCCATAATTGGTATGGCTTATTCGTGAACAC
Found at i:8101855 original size:7 final size:7
Alignment explanation
Indices: 8101843--8101871 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
8101833 GCTTATGTAG
8101843 GTGGGAA
1 GTGGGAA
8101850 GTGGGAA
1 GTGGGAA
8101857 GTGGGAA
1 GTGGGAA
8101864 GTGGGAA
1 GTGGGAA
8101871 G
1 G
8101872 GGTCCATTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.59, T:0.14
Consensus pattern (7 bp):
GTGGGAA
Found at i:8102584 original size:31 final size:32
Alignment explanation
Indices: 8102549--8102608 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
8102539 ATGGTTATTG
*
8102549 AACTATTTTAAAGTATTCA-TTTAAGTCACTA
1 AACTATTTGAAAGTATTCATTTTAAGTCACTA
* *
8102580 AACTATTTGAAAGTTTTTATTTTAAGTCA
1 AACTATTTGAAAGTATTCATTTTAAGTCA
8102609 ATGGACTGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 16 0.64
32 9 0.36
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (32 bp):
AACTATTTGAAAGTATTCATTTTAAGTCACTA
Found at i:8107634 original size:22 final size:21
Alignment explanation
Indices: 8107604--8107650 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
8107594 TACAAATTAA
8107604 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
8107626 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
8107647 ATCT
1 ATCT
8107651 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:8107656 original size:19 final size:19
Alignment explanation
Indices: 8107621--8107699 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
8107611 AGATTACAAG
8107621 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
8107642 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
8107659 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8107678 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8107697 ATC
1 ATC
8107700 CTTAAAGGTT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:8107676 original size:36 final size:38
Alignment explanation
Indices: 8107621--8107693 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
8107611 AGATTACAAG
8107621 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
8107659 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
8107694 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:8112072 original size:60 final size:59
Alignment explanation
Indices: 8111995--8112109 Score: 167
Period size: 60 Copynumber: 1.9 Consensus size: 59
8111985 CTAGTTAAAC
* *
8111995 TCCTTATTCCATGCTTGTCGAAAAGGAGTCATTAAATTGTTGACTCCTTTGGGTTCAAA
1 TCCTTATTCCATGCTTGTCGAAAAGGAATCATTAAATTGCTGACTCCTTTGGGTTCAAA
* * * *
8112054 TCCTTCATTGCATGCTTGTCGAGAATGAATCATTAAATTGCTGACTTCTTTGGGTT
1 TCCTT-ATTCCATGCTTGTCGAAAAGGAATCATTAAATTGCTGACTCCTTTGGGTT
8112110 TGATCTTTGG
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
59 5 0.10
60 44 0.90
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.39
Consensus pattern (59 bp):
TCCTTATTCCATGCTTGTCGAAAAGGAATCATTAAATTGCTGACTCCTTTGGGTTCAAA
Found at i:8115986 original size:20 final size:18
Alignment explanation
Indices: 8115930--8115986 Score: 52
Period size: 17 Copynumber: 3.3 Consensus size: 18
8115920 AATGTAATAT
8115930 ATTTATTTATT---TTTA
1 ATTTATTTATTAAGTTTA
8115945 ATTT-TTTATTAAGTTTA
1 ATTTATTTATTAAGTTTA
*
8115962 A-TTATTTATTATGTTCTAA
1 ATTTATTTATTAAGTT-T-A
8115981 ATTTAT
1 ATTTAT
8115987 AATTAATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
14 6 0.18
15 4 0.12
16 2 0.06
17 15 0.44
18 1 0.03
19 2 0.06
20 4 0.12
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (18 bp):
ATTTATTTATTAAGTTTA
Found at i:8120850 original size:30 final size:30
Alignment explanation
Indices: 8120815--8120872 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
8120805 TAGGCACTTC
*
8120815 CACACGAGT-GAGCCACATGCCCATGTGTGA
1 CACACGAGTAGA-CCACACGCCCATGTGTGA
* *
8120845 CACACGGGTAGACCACACGCCTATGTGT
1 CACACGAGTAGACCACACGCCCATGTGT
8120873 CATGGCTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (30 bp):
CACACGAGTAGACCACACGCCCATGTGTGA
Found at i:8122887 original size:75 final size:73
Alignment explanation
Indices: 8122799--8122970 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
8122789 GGTTTTTCTC
** * * * **
8122799 ATTGAAATACCATACCTACATTTTTCAATTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
8122863 TCAGTATGG
65 TCAGTATGG
8122872 ATTTGATAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
8122937 CTCAGTATGG
64 CTCAGTATGG
8122947 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
8122971 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:8122982 original size:35 final size:35
Alignment explanation
Indices: 8122804--8122970 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
8122794 TTCTCATTGA
** * *
8122804 AATACCATACCTACATTTTTCAATTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
8122839 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
8122879 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
8122914 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
8122949 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
8122971 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 28 0.24
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:8134600 original size:11 final size:11
Alignment explanation
Indices: 8134584--8134615 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8134574 GTTTTGTCCC
*
8134584 TTTTTGGCTCG
1 TTTTTGGCTCA
8134595 TTTTTGGCTCA
1 TTTTTGGCTCA
8134606 TTTTTGGCTC
1 TTTTTGGCTC
8134616 CTGATGCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.03, C:0.19, G:0.22, T:0.56
Consensus pattern (11 bp):
TTTTTGGCTCA
Found at i:8140814 original size:11 final size:11
Alignment explanation
Indices: 8140798--8140829 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8140788 GTTTTGTCCC
8140798 TTTTTGGCTCA
1 TTTTTGGCTCA
*
8140809 TTTTTGGCTCG
1 TTTTTGGCTCA
8140820 TTTTTGGCTC
1 TTTTTGGCTC
8140830 CTGGTGCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.03, C:0.19, G:0.22, T:0.56
Consensus pattern (11 bp):
TTTTTGGCTCA
Found at i:8142754 original size:30 final size:30
Alignment explanation
Indices: 8142697--8142754 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
8142687 TAGACACTTC
* * *
8142697 CACACGGGTAAGCCACACGCTCGTGTGTGA
1 CACACGGGTAAGCCACAAGCCCATGTGTGA
8142727 CACACGGGT-AGACCACAAGCCCATGTGT
1 CACACGGGTAAG-CCACAAGCCCATGTGT
8142755 CATGGCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.26, C:0.31, G:0.28, T:0.16
Consensus pattern (30 bp):
CACACGGGTAAGCCACAAGCCCATGTGTGA
Found at i:8150635 original size:22 final size:22
Alignment explanation
Indices: 8150587--8150632 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
8150577 TTTGTATGAC
*
8150587 ATTATAAGCATCATAATAATCT
1 ATTATAAGAATCATAATAATCT
8150609 ATTATAAGAAT-ATATATAAT-T
1 ATTATAAGAATCATA-ATAATCT
8150630 ATT
1 ATT
8150633 TATTTGTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (22 bp):
ATTATAAGAATCATAATAATCT
Found at i:8158583 original size:10 final size:10
Alignment explanation
Indices: 8158568--8158601 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
8158558 AATTTTAGCT
8158568 TTTATCTTTA
1 TTTATCTTTA
*
8158578 TTTATCCTTA
1 TTTATCTTTA
8158588 TTTATCTTTA
1 TTTATCTTTA
8158598 TTTA
1 TTTA
8158602 ATTGAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:8161010 original size:13 final size:13
Alignment explanation
Indices: 8160992--8161016 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8160982 TCTGCAGGGA
8160992 CACGCCCGTGTGC
1 CACGCCCGTGTGC
8161005 CACGCCCGTGTG
1 CACGCCCGTGTG
8161017 TGATTACTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.44, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGC
Found at i:8162965 original size:5 final size:6
Alignment explanation
Indices: 8162949--8162973 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8162939 TAAAATCTGC
8162949 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
8162974 TAGTTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:8165040 original size:27 final size:27
Alignment explanation
Indices: 8164975--8165153 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
8164965 TTTGGTTTAC
8164975 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
8165001 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
8165028 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
8165055 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
8165082 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
8165109 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
8165136 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
8165154 TCGACCTGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 14 0.10
27 123 0.89
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:8165164 original size:81 final size:81
Alignment explanation
Indices: 8164975--8165225 Score: 244
Period size: 81 Copynumber: 3.1 Consensus size: 81
8164965 TTTGGTTTAC
* * * *
8164975 AAAATTACCAAAATA-CCC-TGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACC
1 AAAATTACCAAAATACCCCGAGC-CTGTAAAATTATC-AAAATACCCTTAGTTTGTAAAATTACC
*
8165037 AAAATACCCCTAGTTTGT
64 AAAATACCCCTAATTTGT
* ** *
8165055 AAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAA
8165120 AATACCCCTAATTTGT
66 AATACCCCTAATTTGT
* ** ** * *
8165136 GAAATTACTGAAATACCCTCGA-CCTGTAAAATTATTGAAATA-CCTTCGACTTGTAAAATTACC
1 AAAATTACCAAAATACCC-CGAGCCTGTAAAATTATCAAAATACCCTTAG-TTTGTAAAATTACC
* *
8165199 AAAGTA-CCCTCAATTTAT
64 AAAATACCCCT-AATTTGT
*
8165217 AGAATTACC
1 AAAATTACC
8165226 GTTTTACCCT
Statistics
Matches: 143, Mismatches: 22, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
80 23 0.16
81 116 0.81
82 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:8165167 original size:27 final size:27
Alignment explanation
Indices: 8165137--8165197 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
8165127 CTAATTTGTG
8165137 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* * *
8165164 AAATTATTGAAATACCTTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
8165191 AAATTAC
1 AAATTAC
8165198 CAAAGTACCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:8165206 original size:27 final size:25
Alignment explanation
Indices: 8164975--8165206 Score: 81
Period size: 27 Copynumber: 8.6 Consensus size: 25
8164965 TTTGGTTTAC
8164975 AAAATTACCAAAATACC-CTG-CTTTGT
1 AAAATTACC-AAATACCTC-GAC-TTGT
* * ** *
8165001 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTAC-CAAATA-CCTCGACTTGT
* * *
8165028 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACC-AAATACCTCGA-CTTGT
* * *
8165055 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACC-AAATACCTCGA-CTTGT
* * * *
8165082 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTA-CCAAATACCTCGA-CTTGT
* * *
8165109 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACC-AAATACCTC-GACTTGT
* * *
8165136 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTAC-CAAATA-CCTCGACTTGT
**
8165163 AAAATTATTGAAATACCTTCGACTTGT
1 AAAATTA-CCAAATACC-TCGACTTGT
8165190 AAAATTACCAAAGTACC
1 AAAATTACCAAA-TACC
8165207 CTCAATTTAT
Statistics
Matches: 168, Mismatches: 24, Indels: 27
0.77 0.11 0.12
Matches are distributed among these distances:
26 21 0.12
27 142 0.85
28 5 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (25 bp):
AAAATTACCAAATACCTCGACTTGT
Found at i:8165233 original size:27 final size:27
Alignment explanation
Indices: 8165203--8165576 Score: 482
Period size: 27 Copynumber: 13.9 Consensus size: 27
8165193 ATTACCAAAG
* * *
8165203 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
** * *
8165230 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
8165257 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACTGTTT
*
8165284 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
8165311 TACCCTC-AGTTTACAGAATTATTGTTT
1 TACCCTCGA-TTTACAGAATTACTGTTT
*
8165338 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
8165365 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
8165392 TACCCTCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
8165419 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
**
8165446 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
8165473 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
8165500 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
8165527 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
8165554 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
8165577 AAAATACCCT
Statistics
Matches: 313, Mismatches: 30, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
26 2 0.01
27 309 0.99
28 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:8165598 original size:27 final size:27
Alignment explanation
Indices: 8165554--8165639 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
8165544 ATTACTGTTT
* ** *
8165554 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
*** **
8165581 TACCCTTGGTTTGTAAAATTACCGCAA
1 TACCCTCAATTTGTAAAATTACCAAAA
*
8165608 TACCCTCAATTTGTAAAACTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
8165635 TACCC
1 TACCC
8165640 CTGTATGGTA
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.38, C:0.26, G:0.07, T:0.29
Consensus pattern (27 bp):
TACCCTCAATTTGTAAAATTACCAAAA
Found at i:8165612 original size:54 final size:54
Alignment explanation
Indices: 8165500--8165639 Score: 127
Period size: 54 Copynumber: 2.6 Consensus size: 54
8165490 ATTACTATTT
* **** * ***
8165500 TACCCTTGATTTACAAAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAAAATTACCGCAA
* **
8165554 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGCAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAAAATTACCGCAA
* ** * *
8165608 TACCCTCAATTTGTAAAACTACCAAAATACCC
1 TACCCTCGATTTACAAAATTACTAAAATACCC
8165640 CTGTATGGTA
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAAAATTACCGCAA
Found at i:8166844 original size:25 final size:25
Alignment explanation
Indices: 8166816--8166863 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
8166806 TTATACCATG
* * *
8166816 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
8166841 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
8166864 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:8166966 original size:20 final size:20
Alignment explanation
Indices: 8166906--8166966 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
8166896 ATAAATATGG
*
8166906 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
8166926 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
8166946 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
8166966 T
1 T
8166967 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:8167043 original size:24 final size:24
Alignment explanation
Indices: 8167016--8167134 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
8167006 GAGGAAGTGA
*
8167016 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
8167040 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
8167063 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
8167087 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
8167111 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
8167135 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:8167085 original size:47 final size:48
Alignment explanation
Indices: 8167016--8167134 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
8167006 GAGGAAGTGA
8167016 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
8167063 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
8167111 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
8167135 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:8167361 original size:31 final size:31
Alignment explanation
Indices: 8167326--8167389 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
8167316 CGTTTACAGT
*
8167326 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
8167357 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
8167388 AA
1 AA
8167390 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:8178038 original size:9 final size:9
Alignment explanation
Indices: 8178024--8178073 Score: 82
Period size: 9 Copynumber: 5.6 Consensus size: 9
8178014 TTTATACAAA
*
8178024 TAATTCAGT
1 TAATTCGGT
8178033 TAATTCGGT
1 TAATTCGGT
8178042 TAATTCGGT
1 TAATTCGGT
*
8178051 TAATTCGAT
1 TAATTCGGT
8178060 TAATTCGGT
1 TAATTCGGT
8178069 TAATT
1 TAATT
8178074 TTATACTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.28, C:0.10, G:0.16, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:8178696 original size:14 final size:14
Alignment explanation
Indices: 8178679--8178709 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8178669 TCCTTATTTA
8178679 TATTTAATTATATT
1 TATTTAATTATATT
*
8178693 TATTTAATTGTATT
1 TATTTAATTATATT
8178707 TAT
1 TAT
8178710 CTTTTAGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (14 bp):
TATTTAATTATATT
Found at i:8181438 original size:49 final size:49
Alignment explanation
Indices: 8181366--8181464 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
8181356 ACGATAGGGG
8181366 TTTTAATTAGAAAGAGATTTCAATTAATCAATCTAGAGTCAATTGTTCT
1 TTTTAATTAGAAAGAGATTTCAATTAATCAATCTAGAGTCAATTGTTCT
8181415 TTTTAATTAGAAAGAGATTTCAATTAATCAATCTAGAGTCAATTGTTCT
1 TTTTAATTAGAAAGAGATTTCAATTAATCAATCTAGAGTCAATTGTTCT
8181464 T
1 T
8181465 ACTCTCGAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.41
Consensus pattern (49 bp):
TTTTAATTAGAAAGAGATTTCAATTAATCAATCTAGAGTCAATTGTTCT
Found at i:8182882 original size:12 final size:12
Alignment explanation
Indices: 8182865--8182890 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8182855 TGGAGTGGCT
8182865 TAATGAGCCATG
1 TAATGAGCCATG
8182877 TAATGAGCCATG
1 TAATGAGCCATG
8182889 TA
1 TA
8182891 CATAGGTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (12 bp):
TAATGAGCCATG
Found at i:8184595 original size:119 final size:118
Alignment explanation
Indices: 8184399--8184616 Score: 280
Period size: 119 Copynumber: 1.8 Consensus size: 118
8184389 ATATGGGCCA
* * * *
8184399 AGGAAACGGGCGTGTGTCCAAGCCGTATGACTCACTACTTGCCATTAAGGACCACATGGACCAGG
1 AGGAAACGGGCGTGCGTCCAAGCCCTATAACTCACTACTTGCCATTAAGGACCACAAGGACCAGG
* *
8184464 GACATAGATGTGTGTCCAGGCTGTGTGACTCACTGTTTGCCATTACATGAGCC
66 GACAGAGATGTGTGTCCAGGCCGTGTGACTCACTGTTTGCCATTACATGAGCC
* ** * *
8184517 AGGAACACGGGCGTGCGTCCAGGCCCTATAACTCACTGTTTGCCATTAGGGACCACACAGG-CTA
1 AGGAA-ACGGGCGTGCGTCCAAGCCCTATAACTCACTACTTGCCATTAAGGACCACA-AGGACCA
8184581 GAGG-CACGAG-TGTGTGTCCAGGCCGTGTGACTCACT
64 G-GGACA-GAGATGTGTGTCCAGGCCGTGTGACTCACT
8184617 ATTTATAATT
Statistics
Matches: 85, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
118 5 0.06
119 74 0.87
120 6 0.07
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.22
Consensus pattern (118 bp):
AGGAAACGGGCGTGCGTCCAAGCCCTATAACTCACTACTTGCCATTAAGGACCACAAGGACCAGG
GACAGAGATGTGTGTCCAGGCCGTGTGACTCACTGTTTGCCATTACATGAGCC
Found at i:8187600 original size:21 final size:21
Alignment explanation
Indices: 8187563--8187609 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
8187553 AAGCCAGTTA
8187563 TAAAA-GTCCATAAACAGTCCT
1 TAAAATGTCCATAAACAG-CCT
*
8187584 TAAAATGTCCAT-TACAGCCT
1 TAAAATGTCCATAAACAGCCT
*
8187604 AAAAAT
1 TAAAAT
8187610 ATCAAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 8 0.35
21 9 0.39
22 6 0.26
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.26
Consensus pattern (21 bp):
TAAAATGTCCATAAACAGCCT
Found at i:8189617 original size:44 final size:43
Alignment explanation
Indices: 8189567--8189720 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 43
8189557 TCTGTTTTCG
8189567 TGTAAGACCATGTCTGGGACGTTGGAATCGAATTATGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGAATCGAATT-TGATTTACA
* * * * * * *
8189611 TGTAAGACCATGTTTGGGACATTGGTATTGTATTTAATTT-CG
1 TGTAAGACCATGTCTGGGACGTTGGAATCGAATTTGATTTACA
* * *
8189653 TGTAAGACCTTGTCTGGGACAG-TGGCATCAATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGAATCGA-ATTTGATTTACA
* * *
8189696 TGTAGGACCACGTCTGGAACGTTGG
1 TGTAAGACCATGTCTGGGACGTTGG
8189721 CATTTTACGA
Statistics
Matches: 86, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 27 0.31
43 30 0.35
44 29 0.34
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACGTTGGAATCGAATTTGATTTACA
Found at i:8189671 original size:42 final size:43
Alignment explanation
Indices: 8189562--8189673 Score: 136
Period size: 44 Copynumber: 2.6 Consensus size: 43
8189552 TAATATCTGT
* *
8189562 TTTCGTGTAAGACCATGTCTGGGACGTTGGAATCGAATTATGA
1 TTTCGTGTAAGACCATGTCTGGGACATTGGAATCGAATTATAA
* * * * *
8189605 TTTACATGTAAGACCATGTTTGGGACATTGGTATTGTATT-TAA
1 TTT-CGTGTAAGACCATGTCTGGGACATTGGAATCGAATTATAA
*
8189648 TTTCGTGTAAGACCTTGTCTGGGACA
1 TTTCGTGTAAGACCATGTCTGGGACA
8189674 GTGGCATCAA
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 20 0.34
43 8 0.14
44 30 0.52
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (43 bp):
TTTCGTGTAAGACCATGTCTGGGACATTGGAATCGAATTATAA
Found at i:8197216 original size:12 final size:12
Alignment explanation
Indices: 8197199--8197224 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8197189 GGGTACAAAG
8197199 TTACAAGAAGCC
1 TTACAAGAAGCC
8197211 TTACAAGAAGCC
1 TTACAAGAAGCC
8197223 TT
1 TT
8197225 GGGTACAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (12 bp):
TTACAAGAAGCC
Found at i:8205724 original size:68 final size:68
Alignment explanation
Indices: 8205558--8205746 Score: 236
Period size: 68 Copynumber: 2.8 Consensus size: 68
8205548 GTAATATGAC
* * * * *
8205558 ATGCTTATAATAAATCAATACGGTAGCAATTAACATGCTTGTAGCAAATCAAT-AGGTAGCAATC
1 ATGCTTATAATAGATCAATACGGTAGCAATTAATATGCTTATAACAAATCAATAAGCTAGCAATC
8205622 AAT
66 AAT
* * * * * * *
8205625 ATACTTATAACAGATCAATACAGTAGCAATTAATATGCTTATAACATATCAATAAGCTAGTAGTT
1 ATGCTTATAATAGATCAATACGGTAGCAATTAATATGCTTATAACAAATCAATAAGCTAGCAATC
*
8205690 TAT
66 AAT
* *
8205693 ATGCTTAAAATAGATCAATATGGTAGCAATTAATATGCTTATAACAAATCAATA
1 ATGCTTATAATAGATCAATACGGTAGCAATTAATATGCTTATAACAAATCAATA
8205747 TATTAGCAAA
Statistics
Matches: 102, Mismatches: 19, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
67 45 0.44
68 57 0.56
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.31
Consensus pattern (68 bp):
ATGCTTATAATAGATCAATACGGTAGCAATTAATATGCTTATAACAAATCAATAAGCTAGCAATC
AAT
Found at i:8205747 original size:34 final size:34
Alignment explanation
Indices: 8205558--8205746 Score: 209
Period size: 34 Copynumber: 5.6 Consensus size: 34
8205548 GTAATATGAC
* *
8205558 ATGCTTATAATAAATCAATACGGTAGCAATTAAC
1 ATGCTTATAACAAATCAATACGGTAGCAATTAAT
* * *
8205592 ATGCTTGTAGCAAATCAATA-GGTAGCAATCAAT
1 ATGCTTATAACAAATCAATACGGTAGCAATTAAT
* * *
8205625 ATACTTATAACAGATCAATACAGTAGCAATTAAT
1 ATGCTTATAACAAATCAATACGGTAGCAATTAAT
* * * * * *
8205659 ATGCTTATAACATATCAATAAGCTAGTAGTTTAT
1 ATGCTTATAACAAATCAATACGGTAGCAATTAAT
* * * *
8205693 ATGCTTAAAATAGATCAATATGGTAGCAATTAAT
1 ATGCTTATAACAAATCAATACGGTAGCAATTAAT
8205727 ATGCTTATAACAAATCAATA
1 ATGCTTATAACAAATCAATA
8205747 TATTAGCAAA
Statistics
Matches: 124, Mismatches: 30, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
33 27 0.22
34 97 0.78
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.31
Consensus pattern (34 bp):
ATGCTTATAACAAATCAATACGGTAGCAATTAAT
Found at i:8209105 original size:5 final size:5
Alignment explanation
Indices: 8209095--8209121 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
8209085 TTAAGGGTGT
8209095 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
8209122 AAGTTGAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:8211705 original size:40 final size:40
Alignment explanation
Indices: 8211646--8211787 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
8211636 AAATTGAATG
* * *
8211646 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
8211686 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
8211726 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
8211766 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
8211788 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:8211788 original size:40 final size:39
Alignment explanation
Indices: 8211685--8211813 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
8211675 TGCTGGAAAT
* * *
8211685 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
8211725 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
8211765 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
8211805 TATATCCGG
1 TATATCCGG
8211814 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:8214691 original size:4 final size:4
Alignment explanation
Indices: 8214682--8214708 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8214672 ATACTTTGCG
8214682 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
8214709 ATATTATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:8216722 original size:33 final size:33
Alignment explanation
Indices: 8216680--8216747 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
8216670 TTCAATAGTA
8216680 GATTTGTAACACAAATACTATTACTAAGAGGAT
1 GATTTGTAACACAAATACTATTACTAAGAGGAT
8216713 GATTTGTAACACAAATACTATTACTAAGAGGAT
1 GATTTGTAACACAAATACTATTACTAAGAGGAT
8216746 GA
1 GA
8216748 CTCTTTTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (33 bp):
GATTTGTAACACAAATACTATTACTAAGAGGAT
Found at i:8220795 original size:3 final size:3
Alignment explanation
Indices: 8220781--8220899 Score: 229
Period size: 3 Copynumber: 39.7 Consensus size: 3
8220771 AAGAAAGATA
*
8220781 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8220829 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8220877 AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
8220900 AAACTCAATG
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 114 1.00
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8220969 original size:15 final size:13
Alignment explanation
Indices: 8220949--8221013 Score: 51
Period size: 15 Copynumber: 4.6 Consensus size: 13
8220939 TGATAATAGT
8220949 AAAAAATACGAAAGA
1 AAAAAATA-GAAA-A
8220964 AAAAAATAGAAAAA
1 AAAAAATAG-AAAA
8220978 AATAGAAATAGCAAAA
1 AA-A-AAATAG-AAAA
*
8220994 TAAAAATA-AAAA
1 AAAAAATAGAAAA
*
8221006 TAAAAATA
1 AAAAAATA
8221014 ATAAAAGTGT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
12 12 0.27
14 9 0.20
15 13 0.29
16 11 0.24
ACGTcount: A:0.77, C:0.03, G:0.08, T:0.12
Consensus pattern (13 bp):
AAAAAATAGAAAA
Found at i:8220978 original size:9 final size:10
Alignment explanation
Indices: 8220961--8220985 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8220951 AAAATACGAA
8220961 AGAAAAAAAT
1 AGAAAAAAAT
8220971 AGAAAAAAAT
1 AGAAAAAAAT
8220981 AGAAA
1 AGAAA
8220986 TAGCAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (10 bp):
AGAAAAAAAT
Found at i:8220988 original size:6 final size:6
Alignment explanation
Indices: 8220975--8221014 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
8220965 AAAAATAGAA
*
8220975 AAAAAT AGAAAT AGCAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT A--AAAAT AAAAAT AAAAAT AAAAAT AA
8221015 TAAAAGTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 25 0.83
8 5 0.17
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:8221044 original size:16 final size:17
Alignment explanation
Indices: 8221023--8221060 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8221013 AATAAAAGTG
*
8221023 TATAAAAAA-TTAAATA
1 TATAAAAAATTTAAAAA
8221039 TATAAAAAATTTAAAAA
1 TATAAAAAATTTAAAAA
8221056 TATAA
1 TATAA
8221061 GTATAAGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TATAAAAAATTTAAAAA
Found at i:8221311 original size:30 final size:30
Alignment explanation
Indices: 8221270--8221326 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8221260 ATGTGAGATC
* *
8221270 CCACACGCCCGTGTGGCCA-AGCCATGTGCT
1 CCACACACCCGTGCGGCCAGA-CCATGTGCT
8221300 CCACACACCCGTGCGGCCAGACCATGT
1 CCACACACCCGTGCGGCCAGACCATGT
8221327 AACTCTCTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.19, C:0.42, G:0.25, T:0.14
Consensus pattern (30 bp):
CCACACACCCGTGCGGCCAGACCATGTGCT
Found at i:8225052 original size:17 final size:17
Alignment explanation
Indices: 8225030--8225064 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8225020 CTAATTAAAA
*
8225030 ATATTAGGGCAAGAATT
1 ATATTAAGGCAAGAATT
8225047 ATATTAAGGCAAGAATT
1 ATATTAAGGCAAGAATT
8225064 A
1 A
8225065 AGAACACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.06, G:0.20, T:0.29
Consensus pattern (17 bp):
ATATTAAGGCAAGAATT
Found at i:8229884 original size:16 final size:16
Alignment explanation
Indices: 8229863--8229893 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8229853 TTCACTATTA
*
8229863 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
8229879 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
8229894 TCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:8234217 original size:37 final size:37
Alignment explanation
Indices: 8234176--8234284 Score: 108
Period size: 37 Copynumber: 3.1 Consensus size: 37
8234166 AAAAATAAAA
8234176 TTATTTTAATAGTTTAATATTAAATTCAATTTAATAT
1 TTATTTTAATAGTTTAATATTAAATTCAATTTAATAT
*
8234213 TTATTTTAATAG--T-AT-TT-TATT-AATTTAATA-
1 TTATTTTAATAGTTTAATATTAAATTCAATTTAATAT
***
8234243 TTAAAATAATTA-TATTAATATTAAATTCAATTTAATAT
1 TTATTTTAA-TAGT-TTAATATTAAATTCAATTTAATAT
8234281 TTAT
1 TTAT
8234285 CTTGTAAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 17
0.71 0.08 0.21
Matches are distributed among these distances:
30 6 0.11
31 11 0.19
32 3 0.05
33 3 0.05
34 4 0.07
35 3 0.05
36 3 0.05
37 21 0.37
38 3 0.05
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (37 bp):
TTATTTTAATAGTTTAATATTAAATTCAATTTAATAT
Found at i:8234326 original size:68 final size:66
Alignment explanation
Indices: 8234180--8234328 Score: 151
Period size: 68 Copynumber: 2.2 Consensus size: 66
8234170 ATAAAATTAT
** * *
8234180 TTTAATAGTTTAATATTAAATTCAATTTAATATTTATTTTAATAGTATTTTATTAATTTAATATT
1 TTTAATA--TTAATATTAAATTCAATTTAATATTTATTTTAATAACATTCTATTAATTT-ATAAT
8234245 AAAA
63 AAAA
8234249 TAATT-ATATTAATATTAAATTCAATTTAATATTTATCTTGTAAATAAACATTCTATT-ATTT-T
1 T--TTAATATTAATATTAAATTCAATTTAATATTTAT-TT-T-AAT-AACATTCTATTAATTTAT
*
8234311 AATAAGA
60 AATAAAA
8234318 TTTAATATTAA
1 TTTAATATTAA
8234329 ATTTAATCTA
Statistics
Matches: 68, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
67 2 0.03
68 35 0.51
69 10 0.15
70 4 0.06
71 9 0.13
72 8 0.12
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (66 bp):
TTTAATATTAATATTAAATTCAATTTAATATTTATTTTAATAACATTCTATTAATTTATAATAAA
A
Found at i:8236711 original size:45 final size:43
Alignment explanation
Indices: 8236662--8236866 Score: 209
Period size: 45 Copynumber: 4.6 Consensus size: 43
8236652 CCGAAGTGAG
**
8236662 GCCATAGTATCTTTCAACTATGGTCTTATTTGTATTGGTTTTAAT
1 GCCATAGTATCTTTCAACTATGGTCTTATTCAT-TTGG-TTTAAT
* * *
8236707 GCCATAGTATCTTTCAATTATGGTCTTATACATTTCCGGTATAAT
1 GCCATAGTATCTTTCAACTATGGTCTTATTCATTT--GGTTTAAT
*
8236752 GTCATAGTATCTTTCAACTATGG-CTTTATTCATTCTGGTTTAAT
1 GCCATAGTATCTTTCAACTATGGTC-TTATTCATT-TGGTTTAAT
* *
8236796 GTCATAGTATCTTTCAACTATGGTCTT-TCTCATTTCGGGTATAAT
1 GCCATAGTATCTTTCAACTATGGTCTTAT-TCATTT--GGTTTAAT
* *
8236841 GTCATGGTATCTTTCAACCT-TGGTCT
1 GCCATAGTATCTTTCAA-CTATGGTCT
8236867 ATCTCGTTTC
Statistics
Matches: 140, Mismatches: 11, Indels: 18
0.83 0.07 0.11
Matches are distributed among these distances:
43 2 0.01
44 40 0.29
45 93 0.66
46 5 0.04
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.45
Consensus pattern (43 bp):
GCCATAGTATCTTTCAACTATGGTCTTATTCATTTGGTTTAAT
Found at i:8236837 original size:89 final size:90
Alignment explanation
Indices: 8236664--8236866 Score: 272
Period size: 89 Copynumber: 2.3 Consensus size: 90
8236654 GAAGTGAGGC
** *
8236664 CATAGTATCTTTCAACTATGGTCTTATTTGTATTGGTTTTAATGCCATAGTATCTTTCAATTATG
1 CATAGTATCTTTCAACTATGGTCTTATTCATATTGGTTTTAATGCCATAGTATCTTTCAACTATG
8236729 GTCTTATACATTTCCGGTATAATGT
66 GTCTTATACATTTCCGGTATAATGT
*
8236754 CATAGTATCTTTCAACTATGG-CTTTATTCAT-TCTGG-TTTAATGTCATAGTATCTTTCAACTA
1 CATAGTATCTTTCAACTATGGTC-TTATTCATAT-TGGTTTTAATGCCATAGTATCTTTCAACTA
* *
8236816 TGGTCTT-TCTCATTTCGGGTATAATGT
64 TGGTCTTAT-ACATTTCCGGTATAATGT
*
8236843 CATGGTATCTTTCAACCT-TGGTCT
1 CATAGTATCTTTCAA-CTATGGTCT
8236867 ATCTCGTTTC
Statistics
Matches: 101, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
88 1 0.01
89 67 0.66
90 33 0.33
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.46
Consensus pattern (90 bp):
CATAGTATCTTTCAACTATGGTCTTATTCATATTGGTTTTAATGCCATAGTATCTTTCAACTATG
GTCTTATACATTTCCGGTATAATGT
Found at i:8238917 original size:22 final size:22
Alignment explanation
Indices: 8238892--8238933 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8238882 TTTTGCTTTG
*
8238892 TTTATTTTATTTTAACTTAACT
1 TTTATTTTAATTTAACTTAACT
*
8238914 TTTATTTTAATTTAATTTAA
1 TTTATTTTAATTTAACTTAA
8238934 TTTAAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTATTTTAATTTAACTTAACT
Found at i:8238918 original size:17 final size:17
Alignment explanation
Indices: 8238896--8238928 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8238886 GCTTTGTTTA
8238896 TTTTATTTTAACTTAAC
1 TTTTATTTTAACTTAAC
*
8238913 TTTTATTTTAATTTAA
1 TTTTATTTTAACTTAA
8238929 TTTAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTATTTTAACTTAAC
Found at i:8242133 original size:22 final size:21
Alignment explanation
Indices: 8242103--8242168 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
8242093 TACAAATTAA
8242103 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
8242125 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
8242146 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
8242165 ATCT
1 ATCT
8242169 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:8242155 original size:19 final size:19
Alignment explanation
Indices: 8242120--8242217 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
8242110 AGATTACAAG
8242120 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
8242141 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8242160 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
8242177 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8242196 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8242215 ATC
1 ATC
8242218 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:8242184 original size:36 final size:37
Alignment explanation
Indices: 8242120--8242217 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
8242110 AGATTACAAG
8242120 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
8242160 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
8242196 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
8242218 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:8243017 original size:44 final size:44
Alignment explanation
Indices: 8242957--8243058 Score: 152
Period size: 44 Copynumber: 2.3 Consensus size: 44
8242947 ATTTGCTCCA
* * * *
8242957 CTACTGCTTA-GGGAGATAAGATCCGCAATTTTGACTTGTTATC
1 CTACTGCTTAGGGGAGATAAGATCCGCAAATTTAACCTGTTACC
*
8243000 CTACTGCTTAGGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGGAGATAAGATCCGCAAATTTAACCTGTTACC
8243044 CTACTGCTTAGGGGA
1 CTACTGCTTAGGGGA
8243059 TTAAGGCACT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 10 0.19
44 43 0.81
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (44 bp):
CTACTGCTTAGGGGAGATAAGATCCGCAAATTTAACCTGTTACC
Found at i:8243997 original size:20 final size:20
Alignment explanation
Indices: 8243974--8244046 Score: 71
Period size: 20 Copynumber: 3.6 Consensus size: 20
8243964 TCACCTTGGC
*
8243974 CTCTCTATTTTTTCTTTTTT
1 CTCTCTTTTTTTTCTTTTTT
*
8243994 CTCT-TTTTTTTTTTATTTTT
1 CTCTCTTTTTTTTCT-TTTTT
*
8244014 TTCTCTTTTTCTTTTCTTTTTT
1 CTCTC-TTTT-TTTTCTTTTTT
8244036 -TC-CTTTTTTTT
1 CTCTCTTTTTTTT
8244047 TGAAATAGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
18 4 0.09
19 12 0.27
20 13 0.29
21 2 0.04
22 9 0.20
23 5 0.11
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (20 bp):
CTCTCTTTTTTTTCTTTTTT
Found at i:8244000 original size:8 final size:7
Alignment explanation
Indices: 8243981--8244044 Score: 60
Period size: 7 Copynumber: 8.9 Consensus size: 7
8243971 GGCCTCTCTA
8243981 TTTTTTC
1 TTTTTTC
8243988 TTTTTTC
1 TTTTTTC
8243995 TCTTTTT-
1 T-TTTTTC
*
8244002 TTTTTTAT
1 TTTTTT-C
8244010 TTTTTTC
1 TTTTTTC
8244017 TCTTTTTC
1 T-TTTTTC
8244025 TTTTCTT-
1 TTTT-TTC
*
8244032 TTTTTCC
1 TTTTTTC
8244039 TTTTTT
1 TTTTTT
8244045 TTTGAAATAG
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
6 6 0.12
7 22 0.46
8 20 0.42
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTTC
Found at i:8244006 original size:22 final size:21
Alignment explanation
Indices: 8243981--8244047 Score: 91
Period size: 22 Copynumber: 3.2 Consensus size: 21
8243971 GGCCTCTCTA
*
8243981 TTTTTTCTTTTTTCTCTTTTT
1 TTTTTTTTTTTTTCTCTTTTT
8244002 TTTTTTATTTTTTTCTCTTTTT
1 TTTTTT-TTTTTTTCTCTTTTT
* *
8244024 CTTTTCTTTTTTTC-CTTTTT
1 TTTTTTTTTTTTTCTCTTTTT
8244044 TTTT
1 TTTT
8244048 GAAATAGAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
20 9 0.22
21 14 0.34
22 18 0.44
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTTTTTTTTCTCTTTTT
Found at i:8244010 original size:28 final size:29
Alignment explanation
Indices: 8243981--8244045 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
8243971 GGCCTCTCTA
*
8243981 TTTTTTCT-TTTTTCTCTTTTTTTTTTTAT
1 TTTTTTCTCTTTTTCT-TTTCTTTTTTTAT
*
8244010 TTTTTTCTCTTTTTCTTTTCTTTTTTTCCT
1 TTTTTTCTCTTTTTCTTTTCTTTTTTT-AT
8244040 TTTTTT
1 TTTTTT
8244046 TTGAAATAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 18 0.56
30 14 0.44
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.85
Consensus pattern (29 bp):
TTTTTTCTCTTTTTCTTTTCTTTTTTTAT
Found at i:8249701 original size:22 final size:21
Alignment explanation
Indices: 8249671--8249736 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
8249661 TACAAATTAA
8249671 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
8249693 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
8249714 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
8249733 ATCT
1 ATCT
8249737 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:8249723 original size:19 final size:19
Alignment explanation
Indices: 8249688--8249785 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
8249678 AGATTACAAG
8249688 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
8249709 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8249728 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
8249745 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8249764 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8249783 ATC
1 ATC
8249786 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:8249752 original size:36 final size:37
Alignment explanation
Indices: 8249688--8249785 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
8249678 AGATTACAAG
8249688 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
8249728 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
8249764 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
8249786 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:8251205 original size:11 final size:11
Alignment explanation
Indices: 8251171--8251220 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
8251161 TTAGGTTAGG
8251171 TTTTCTTTCTCT
1 TTTTCTTT-TCT
* *
8251183 TTTCCTTCTCT
1 TTTTCTTTTCT
*
8251194 TTTTTTTTTCT
1 TTTTCTTTTCT
8251205 TTTTCTTTTCAT
1 TTTTCTTTTC-T
8251217 TTTT
1 TTTT
8251221 AGTTTAGGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
11 20 0.65
12 11 0.35
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTCTTTTCT
Found at i:8251263 original size:26 final size:26
Alignment explanation
Indices: 8251204--8251263 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
8251194 TTTTTTTTTC
* **
8251204 TTTTTCTTTTCATTTTTAGTTTAGGT
1 TTTTTCTTTTCATTTTTAGGTTAAAT
*
8251230 TTTCTCTTTTC-TTTTTAGGTTAAAT
1 TTTTTCTTTTCATTTTTAGGTTAAAT
8251255 TTTATTCTT
1 TTT-TTCTT
8251264 GTAGTTTTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.13, C:0.10, G:0.08, T:0.68
Consensus pattern (26 bp):
TTTTTCTTTTCATTTTTAGGTTAAAT
Found at i:8252517 original size:2 final size:2
Alignment explanation
Indices: 8252510--8252541 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8252500 AAACAAAATC
8252510 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8252542 TTCTAAGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8254584 original size:18 final size:18
Alignment explanation
Indices: 8254557--8254593 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8254547 CAAATGAATC
* *
8254557 ATTTCCATTTTCATTTTT
1 ATTTCAATTTCCATTTTT
8254575 ATTTCAATTTCCATTTTT
1 ATTTCAATTTCCATTTTT
8254593 A
1 A
8254594 GAAACCTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTCAATTTCCATTTTT
Found at i:8256307 original size:2 final size:2
Alignment explanation
Indices: 8256300--8256342 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8256290 TGAGGGCTTT
8256300 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8256342 T
1 T
8256343 CCCCAGAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8258611 original size:2 final size:2
Alignment explanation
Indices: 8258604--8258644 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
8258594 TCTTACCCTT
* *
8258604 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TG TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8258645 TGTCTTTCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.44, G:0.02, T:0.54
Consensus pattern (2 bp):
TC
Found at i:8263035 original size:14 final size:14
Alignment explanation
Indices: 8263015--8263047 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
8263005 TTTCAACTAG
8263015 ATCTACGGAGGACA
1 ATCTACGGAGGACA
*
8263029 TTCTACGGAGGACA
1 ATCTACGGAGGACA
8263043 ATCTA
1 ATCTA
8263048 GTAAGTCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (14 bp):
ATCTACGGAGGACA
Found at i:8263566 original size:39 final size:39
Alignment explanation
Indices: 8263517--8263595 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
8263507 CTATAAATAG
*
8263517 ACATAGTCTATTCCTCTTGTAATTATTCGAATTCGACAT
1 ACATAGTCTATTCCTCTTATAATTATTCGAATTCGACAT
*
8263556 ACATTGTCTATTCCTCTTATAATTATTCGAATTCGACAT
1 ACATAGTCTATTCCTCTTATAATTATTCGAATTCGACAT
8263595 A
1 A
8263596 GTGAATTTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (39 bp):
ACATAGTCTATTCCTCTTATAATTATTCGAATTCGACAT
Found at i:8263674 original size:5 final size:5
Alignment explanation
Indices: 8263664--8263698 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
8263654 CTGTGTGTTC
8263664 TTTAT TTTAT TTTATT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTTA
8263699 AAAAATTGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:8263685 original size:16 final size:16
Alignment explanation
Indices: 8263664--8263697 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8263654 CTGTGTGTTC
8263664 TTTATTTTATTTTATT
1 TTTATTTTATTTTATT
8263680 TTTATTTTATTTTATT
1 TTTATTTTATTTTATT
8263696 TT
1 TT
8263698 AAAAAATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTATTTTATTTTATT
Found at i:8278261 original size:2 final size:2
Alignment explanation
Indices: 8278249--8278278 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
8278239 CTCGTATTGT
8278249 TA TA GTA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA T
8278279 GATGTTTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8279439 original size:27 final size:27
Alignment explanation
Indices: 8279409--8279472 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
8279399 TGAGTTTAGA
*
8279409 GTTTAGGGTTAAAGTTTA-AGGTTCAAG
1 GTTTAGGATTAAAGTTTAGA-GTTCAAG
* * *
8279436 GTTTAAGATTCAAGTTTTGAGTTCAAG
1 GTTTAGGATTAAAGTTTAGAGTTCAAG
8279463 GTTTA-GATTA
1 GTTTAGGATTA
8279473 CAAAATTACC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 4 0.13
27 26 0.84
28 1 0.03
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.41
Consensus pattern (27 bp):
GTTTAGGATTAAAGTTTAGAGTTCAAG
Found at i:8279441 original size:14 final size:14
Alignment explanation
Indices: 8279409--8279467 Score: 59
Period size: 14 Copynumber: 4.4 Consensus size: 14
8279399 TGAGTTTAGA
* *
8279409 GTTTAGGGTT-AAA
1 GTTTAAGGTTCAAG
8279422 GTTTAAGGTTCAAG
1 GTTTAAGGTTCAAG
*
8279436 GTTTAAGATTCAAG
1 GTTTAAGGTTCAAG
* *
8279450 TTTTGA-GTTCAAG
1 GTTTAAGGTTCAAG
8279463 GTTTA
1 GTTTA
8279468 GATTACAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
13 18 0.49
14 19 0.51
ACGTcount: A:0.29, C:0.05, G:0.25, T:0.41
Consensus pattern (14 bp):
GTTTAAGGTTCAAG
Found at i:8279662 original size:21 final size:20
Alignment explanation
Indices: 8279612--8279662 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
8279602 ACTCGGAACC
8279612 TTGAACTC-AAACCCAAACT
1 TTGAACTCTAAACCCAAACT
**
8279631 TTG-GGTCCTAAACCCTAAACT
1 TTGAACT-CTAAACCC-AAACT
8279652 TTGAACTCTAA
1 TTGAACTCTAA
8279663 TATTGAACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
18 1 0.04
19 4 0.17
20 6 0.25
21 12 0.50
22 1 0.04
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.27
Consensus pattern (20 bp):
TTGAACTCTAAACCCAAACT
Found at i:8279766 original size:20 final size:19
Alignment explanation
Indices: 8279741--8279788 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
8279731 TTAAAATTTT
8279741 AAGTTTAA-GATTTAGGGTTC
1 AAGTTTAATG-TTT-GGGTTC
8279761 AAGTTTCAATGTTTGGGTTC
1 AAGTTT-AATGTTTGGGTTC
8279781 AATGTTTA
1 AA-GTTTA
8279789 GAGTTCGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 15 0.60
21 9 0.36
22 1 0.04
ACGTcount: A:0.27, C:0.06, G:0.23, T:0.44
Consensus pattern (19 bp):
AAGTTTAATGTTTGGGTTC
Found at i:8280717 original size:127 final size:127
Alignment explanation
Indices: 8280490--8280729 Score: 426
Period size: 127 Copynumber: 1.9 Consensus size: 127
8280480 GCTTTAGCCT
* *
8280490 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACAATT
1 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGAACAATT
*
8280555 CTTCGAATTCTTTAAATACCGAACATTGCCCTTATTTTGAAAATTTTTTGAGAGTGAACTGG
66 CTTCGAATTCTTTAAATACCGAACATTGCCCTTATTTTGAAAAATTTTTGAGAGTGAACTGG
*
8280617 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGAACGATT
1 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGAACAATT
* *
8280682 CTTCGAATTCTTTAAATACCGAACATTGTCTTTATTTTGAAAAATTTT
66 CTTCGAATTCTTTAAATACCGAACATTGCCCTTATTTTGAAAAATTTT
8280730 GACAGAAGAT
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 107 1.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (127 bp):
TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGAACAATT
CTTCGAATTCTTTAAATACCGAACATTGCCCTTATTTTGAAAAATTTTTGAGAGTGAACTGG
Found at i:8281221 original size:14 final size:14
Alignment explanation
Indices: 8281177--8281232 Score: 60
Period size: 14 Copynumber: 3.9 Consensus size: 14
8281167 TAACTTCGCT
8281177 TAAATATAT-ATATA
1 TAAATATATAATA-A
* *
8281191 TATATATTTACATAA
1 TAAATATATA-ATAA
8281206 TAAATATATAATAA
1 TAAATATATAATAA
*
8281220 TAAATAAATAATA
1 TAAATATATAATA
8281233 TAATAATATG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
14 23 0.66
15 9 0.26
16 3 0.09
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAATATATAATAA
Found at i:8281233 original size:19 final size:18
Alignment explanation
Indices: 8281204--8281240 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
8281194 ATATTTACAT
8281204 AATAAATATATAATAATA
1 AATAAATATATAATAATA
8281222 AATAAATAATATAATAATA
1 AATAAAT-ATATAATAATA
8281241 TGAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:8281681 original size:18 final size:18
Alignment explanation
Indices: 8281658--8281730 Score: 78
Period size: 18 Copynumber: 4.0 Consensus size: 18
8281648 ATAACAAGTA
8281658 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
8281676 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
* * *
8281694 ACGGT-TTAGTAGGGT-GTGG
1 -GGGTGAT-GGA-GGTAGTGG
8281713 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
8281731 ATGGTTTAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
17 3 0.07
18 28 0.64
19 10 0.23
20 3 0.07
ACGTcount: A:0.16, C:0.01, G:0.58, T:0.25
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:8281709 original size:29 final size:29
Alignment explanation
Indices: 8281676--8281775 Score: 74
Period size: 37 Copynumber: 3.2 Consensus size: 29
8281666 GAGGTAGTGG
8281676 GGGTGATGGAGGTAGTGGACGGTTTAGTA
1 GGGTGATGGAGGTAGTGGACGGTTTAGTA
*
8281705 GGGTGTGGGGGTGATGGAGGTAGTGGATGGTTTAGTA
1 --------GGGTGATGGAGGTAGTGGACGGTTTAGTA
* * ** *
8281742 GCGTGATGGAGTTAGTGTTCGGTTTAGTG
1 GGGTGATGGAGGTAGTGGACGGTTTAGTA
8281771 GGGTG
1 GGGTG
8281776 TTTAATTTGG
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
29 27 0.49
37 28 0.51
ACGTcount: A:0.16, C:0.03, G:0.50, T:0.31
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGGACGGTTTAGTA
Found at i:8281722 original size:37 final size:37
Alignment explanation
Indices: 8281672--8281742 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
8281662 GATGGAGGTA
8281672 GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAGGGT
1 GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAGGGT
*
8281709 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAG
1 GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAG
8281743 CGTGATGGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.17, C:0.01, G:0.54, T:0.28
Consensus pattern (37 bp):
GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAGGGT
Found at i:8284175 original size:39 final size:39
Alignment explanation
Indices: 8284125--8284292 Score: 221
Period size: 39 Copynumber: 4.3 Consensus size: 39
8284115 GTGTGAGATA
* * * *
8284125 TATATCCGGGCTAATTCCCGAAGGCGTTTGTACTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTATGCTGGTGT
* *
8284164 TATATCTGGGCTAAGTCCCGAAGGCATTTATGCAGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTATGCTGGTGT
* *
8284203 TATATCCGGGCTAAGTCCCGAATGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTATGCTGGTGT
* * *
8284242 TATATCTGGGCTAAGTCCCCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGT-CCCGAAGGCATTTATGCTGGTGT
8284281 TATATCCGGGCT
1 TATATCCGGGCT
8284293 TAAAGTCCTG
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 104 0.93
40 8 0.07
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTATGCTGGTGT
Found at i:8287704 original size:49 final size:49
Alignment explanation
Indices: 8287580--8287704 Score: 153
Period size: 49 Copynumber: 2.6 Consensus size: 49
8287570 ATGAAAGTTG
* * * * *
8287580 AACATGTGACCACATAACTACTGTCAATTGGCCTCTCGAGTTATACTCC
1 AACATGTGATCGCATAACCACTGTCAAATGGCCTCCCGAGTTATACTCC
* * *
8287629 AACATGTGATTGCATAACCAATGTCAAATGGGCTCCCGAGTTATACTCC
1 AACATGTGATCGCATAACCACTGTCAAATGGCCTCCCGAGTTATACTCC
*
8287678 AATC-TGTGATCGCATAACCACCGTCAA
1 AA-CATGTGATCGCATAACCACTGTCAA
8287705 CTAGAAGCCC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
49 63 0.98
50 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (49 bp):
AACATGTGATCGCATAACCACTGTCAAATGGCCTCCCGAGTTATACTCC
Found at i:8301702 original size:18 final size:18
Alignment explanation
Indices: 8301679--8301713 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8301669 TGGTAAAAAT
* *
8301679 AAAAAATAAAAATGAAAG
1 AAAAAAGAAAAAAGAAAG
8301697 AAAAAAGAAAAAAGAAA
1 AAAAAAGAAAAAAGAAA
8301714 AAAGAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (18 bp):
AAAAAAGAAAAAAGAAAG
Done.