Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 310 of 433
Found at i:96635512 original size:50 final size:52
Alignment explanation
Indices: 96635458--96635569 Score: 158
Period size: 53 Copynumber: 2.2 Consensus size: 52
96635448 TGGAACAACC
* *
96635458 ATGGTCTTAT-C-CGTCA-ATTCATCACATTATACCGATGCCATAGCCCAGCT
1 ATGGTCTTATACGAGTCACATT-ATCACATTACACCGATGCCATAGCCCAGCT
*
96635508 ATGGTCTTATACGGAGTCACATTATCACATTGCACCGATGCCATAGCCCAGCT
1 ATGGTCTTATAC-GAGTCACATTATCACATTACACCGATGCCATAGCCCAGCT
96635561 ATGGTCTTA
1 ATGGTCTTA
96635570 AACGGGCACA
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
50 10 0.18
51 1 0.02
53 41 0.75
54 3 0.05
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (52 bp):
ATGGTCTTATACGAGTCACATTATCACATTACACCGATGCCATAGCCCAGCT
Found at i:96635548 original size:53 final size:53
Alignment explanation
Indices: 96635470--96635574 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
96635460 GGTCTTATCC
* *
96635470 GTCAATTCATCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGA
1 GTCAATTCATCACATTACACCGATGCCATAGCCCAGCTATGGTCTTAAACGGA
*
96635523 GTCACATT-ATCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 GTCA-ATTCATCACATTACACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
96635575 GCACACTTGT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
53 45 0.94
54 3 0.06
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (53 bp):
GTCAATTCATCACATTACACCGATGCCATAGCCCAGCTATGGTCTTAAACGGA
Found at i:96642877 original size:13 final size:13
Alignment explanation
Indices: 96642859--96642886 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
96642849 ATAAAATTGG
96642859 AAAGATGATAAAT
1 AAAGATGATAAAT
96642872 AAAGATGATAAAT
1 AAAGATGATAAAT
96642885 AA
1 AA
96642887 TAAAATAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAGATGATAAAT
Found at i:96644745 original size:49 final size:49
Alignment explanation
Indices: 96644673--96644846 Score: 240
Period size: 49 Copynumber: 3.5 Consensus size: 49
96644663 TAGTACGCAC
*
96644673 AGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACGT
* * * * *
96644722 AGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCAT
1 AGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCAGGTACACGT
** * *
96644773 AGTAGCCTGCACTTAGTACTACACATGCGACCAAGAATCTGGCACACGT
1 AGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACGT
96644822 AGTAGCCTGCACTTAGTACTACACA
1 AGTAGCCTGCACTTAGTACTACACA
96644847 CGTGACCCCA
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 62 0.57
50 6 0.06
51 40 0.37
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (49 bp):
AGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACGT
Found at i:96644826 original size:100 final size:100
Alignment explanation
Indices: 96644665--96644851 Score: 329
Period size: 100 Copynumber: 1.9 Consensus size: 100
96644655 AAGCTATCTA
** *
96644665 GTACGCACAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCACAGTAGCCTGCACTTAGTACTACACATGCGACCAAGAATCCGGCACACGTAGTAGCCT
96644730 GCACTTAGTACTACACACGTGATCGAAGTTATCAG
66 GCACTTAGTACTACACACGTGATCGAAGTTATCAG
* *
96644765 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGAATCTGGCACACGTAGTAGCCT
1 GTACGCACAGTAGCCTGCACTTAGTACTACACATGCGACCAAGAATCCGGCACACGTAGTAGCCT
96644830 GCACTTAGTACTACACACGTGA
66 GCACTTAGTACTACACACGTGA
96644852 CCCCACAATA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (100 bp):
GTACGCACAGTAGCCTGCACTTAGTACTACACATGCGACCAAGAATCCGGCACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTTATCAG
Found at i:96645535 original size:30 final size:30
Alignment explanation
Indices: 96645501--96645560 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
96645491 CTTTAATACG
96645501 AACTTTGGCAAAATTATCA-TTTTGCCCCTA
1 AACTTTGGCAAAATTA-CATTTTTGCCCCTA
* *
96645531 AACTTTTGCATAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACATTTTTGCCCCTA
96645561 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACATTTTTGCCCCTA
Found at i:96646890 original size:26 final size:26
Alignment explanation
Indices: 96646854--96646905 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
96646844 TAGGGTTAGC
96646854 CACCTGAAAGCTTTCACTGTCATTCA
1 CACCTGAAAGCTTTCACTGTCATTCA
96646880 CACCTGAAAGCTTTCACTGTCATTCA
1 CACCTGAAAGCTTTCACTGTCATTCA
96646906 TCCTTTCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (26 bp):
CACCTGAAAGCTTTCACTGTCATTCA
Found at i:96646990 original size:21 final size:21
Alignment explanation
Indices: 96646966--96647013 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
96646956 TGCCGATTTC
96646966 TTCTTCC-TCTCTTTTTCCTTT
1 TTCTTCCTTC-CTTTTTCCTTT
* *
96646987 TTCTTTCTTCCTTTTTTCTTT
1 TTCTTCCTTCCTTTTTCCTTT
96647008 TTCTTC
1 TTCTTC
96647014 TAGACGAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (21 bp):
TTCTTCCTTCCTTTTTCCTTT
Found at i:96646999 original size:14 final size:14
Alignment explanation
Indices: 96646975--96647010 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
96646965 CTTCTTCCTC
96646975 TCTTTTTCC-TTTT
1 TCTTTTTCCTTTTT
96646988 TCTTTCTTCCTTTTT
1 TCTTT-TTCCTTTTT
96647003 TCTTTTTC
1 TCTTTTTC
96647011 TTCTAGACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.24
14 7 0.33
15 9 0.43
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (14 bp):
TCTTTTTCCTTTTT
Found at i:96647993 original size:3 final size:3
Alignment explanation
Indices: 96647974--96648031 Score: 84
Period size: 3 Copynumber: 19.7 Consensus size: 3
96647964 CCATACGGGT
*
96647974 TAA TAAA TAA AAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
96648019 TAA TAA TAA -AA TA
1 TAA TAA TAA TAA TA
96648032 GGCAATAAGT
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
2 4 0.08
3 43 0.86
4 3 0.06
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:96648441 original size:65 final size:65
Alignment explanation
Indices: 96648337--96648467 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
96648327 CCCCTAGGGT
*
96648337 TAAGGTTGACCTGAATGCATGTTTGACTGTTATTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
*
96648402 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGTCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
96648467 T
1 T
96648468 GCATGGGACT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.44
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:96652533 original size:267 final size:268
Alignment explanation
Indices: 96652015--96652542 Score: 767
Period size: 267 Copynumber: 2.0 Consensus size: 268
96652005 ATTCAAAAAG
** *
96652015 TGCACATACTATTCCCAATAGCATGTCAATAGTATCTTAACAACTTCTCTAAGTTTACAAGAGTA
1 TGCACATACTATTCCCAATAGCATGTCAATAGTATCTTAACAACTTCTCTAAAATTACAAGAGCA
* *
96652080 AAGTTTAAGTAACAATTCAATTTTGTTTCACTGCAATCATATTCACATATTCACTCATTCATTTA
66 AAGTTTAAGTAACAATTAAATTTCGTTTCACTGCAATCATATTCACATATTCACTCATTCATTTA
***
96652145 TGCACATATCCATACACATTGCCACTTGATACTTTTTAGATTAGCACCCATATATCATAATCATA
131 TGCACATATCCATACACATTGCCACTTGATACTTCCCAGATTAGCACCCATATATCATAATCATA
* * * *
96652210 ATCAAGGATTCAATAGGCAACCATTCATGTTTTAATCTAAGATTTTGTACTCTCTTGCTCTTATA
196 ATCAAGGATTCAATAGGCAACCATTCATATTTTAATCTAAGAGTTTATAATCTCTTGCTCTTATA
96652275 TTCGACAA
261 TTCGACAA
* * * *
96652283 TGCACATACTATTTCCTATAGCATGTCAATTGTATGC-T-ATAACTTCTCTAAAATT-CGAAGAG
1 TGCACATACTATTCCCAATAGCATGTCAATAGTAT-CTTAACAACTTCTCTAAAATTAC-AAGAG
*
96652345 CAAAGTTTAAGTAACAATTAAATTTCGTTTCACTGCAATCATATTCACATATTCACTCTTTCATT
64 CAAAGTTTAAGTAACAATTAAATTTCGTTTCACTGCAATCATATTCACATATTCACTCATTCATT
** * * * * *
96652410 TATGCATGTGTGCATACTCATTGCGACTTGATACTTCCCA-ATGTAGCACCCATATATCATAGTC
129 TATGCACATATCCATACACATTGCCACTTGATACTTCCCAGAT-TAGCACCCATATATCATAATC
* *
96652474 ATAATCAAGGATTCAGTAGGCAACCATTCATATTTTAATGTAAGAGTTTATAATCTCTTGCTCTT
193 ATAATCAAGGATTCAATAGGCAACCATTCATATTTTAATCTAAGAGTTTATAATCTCTTGCTCTT
96652539 ATAT
258 ATAT
96652543 CCGGTTGTCA
Statistics
Matches: 231, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
266 3 0.01
267 194 0.84
268 33 0.14
269 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (268 bp):
TGCACATACTATTCCCAATAGCATGTCAATAGTATCTTAACAACTTCTCTAAAATTACAAGAGCA
AAGTTTAAGTAACAATTAAATTTCGTTTCACTGCAATCATATTCACATATTCACTCATTCATTTA
TGCACATATCCATACACATTGCCACTTGATACTTCCCAGATTAGCACCCATATATCATAATCATA
ATCAAGGATTCAATAGGCAACCATTCATATTTTAATCTAAGAGTTTATAATCTCTTGCTCTTATA
TTCGACAA
Found at i:96653650 original size:22 final size:24
Alignment explanation
Indices: 96653595--96653651 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
96653585 ACCTGAAAAG
96653595 GAAGAAGGGAAAGAGAGAGAAGAT
1 GAAGAAGGGAAAGAGAGAGAAGAT
* *
96653619 GATGAAGGGAGAA-AG-GAGCAG-T
1 GAAGAAGGGA-AAGAGAGAGAAGAT
96653641 GAAGAAGGGAA
1 GAAGAAGGGAA
96653652 GACTTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.03
22 10 0.34
23 5 0.17
24 11 0.38
25 2 0.07
ACGTcount: A:0.49, C:0.02, G:0.44, T:0.05
Consensus pattern (24 bp):
GAAGAAGGGAAAGAGAGAGAAGAT
Found at i:96659433 original size:41 final size:40
Alignment explanation
Indices: 96659262--96659443 Score: 165
Period size: 41 Copynumber: 4.5 Consensus size: 40
96659252 GGGTCTAAAT
96659262 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * *
96659303 CCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAA
1 CCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * *
96659343 CC-AGACTTAGTTCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
* *
96659384 CCGAGCTTGGTCTCGAAGGGTTTTTGAGCCAGTGCTAAGAA
1 CCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTGCTAATAA
* *
96659425 TCGGGCTTGGTTCCGAAGG
1 CCGAGCTTGGTT-CGAAGG
96659444 ATGTTTGTGC
Statistics
Matches: 113, Mismatches: 17, Indels: 22
0.74 0.11 0.14
Matches are distributed among these distances:
39 7 0.06
40 30 0.27
41 68 0.60
42 5 0.04
43 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:96659966 original size:13 final size:13
Alignment explanation
Indices: 96659948--96659973 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
96659938 CGAAATGCTT
96659948 ATTCTCTGTTTTA
1 ATTCTCTGTTTTA
96659961 ATTCTCTGTTTTA
1 ATTCTCTGTTTTA
96659974 TAGATTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.08, T:0.62
Consensus pattern (13 bp):
ATTCTCTGTTTTA
Found at i:96667825 original size:40 final size:41
Alignment explanation
Indices: 96667738--96667825 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 41
96667728 AGCTTGGTCT
* *
96667738 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTT
1 CGAAGGGCTTTAGAGCCAGTGCTAATAACCGAACTTAGTTC
* * *
96667779 CGAAGGGCTTTAGAGCCAGTG-TCATGACCGGACTTAGTTC
1 CGAAGGGCTTTAGAGCCAGTGCTAATAACCGAACTTAGTTC
96667819 CGAAGGG
1 CGAAGGG
96667826 ACTTAGTCTC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 22 0.52
41 20 0.48
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (41 bp):
CGAAGGGCTTTAGAGCCAGTGCTAATAACCGAACTTAGTTC
Found at i:96670728 original size:23 final size:23
Alignment explanation
Indices: 96670698--96670745 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
96670688 GGGCTGTGTG
96670698 CCTCACGCGGCTGAGACACACAC
1 CCTCACGCGGCTGAGACACACAC
96670721 CCTCACGCGGCTGAGACACACAC
1 CCTCACGCGGCTGAGACACACAC
96670744 CC
1 CC
96670746 ATGTCTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.46, G:0.21, T:0.08
Consensus pattern (23 bp):
CCTCACGCGGCTGAGACACACAC
Found at i:96672840 original size:47 final size:46
Alignment explanation
Indices: 96672765--96672978 Score: 238
Period size: 47 Copynumber: 4.6 Consensus size: 46
96672755 AGTTTCTTGT
96672765 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATGA
* * * **
96672811 GTGCCAGTATAAGACCATGTCTAGGACATGGCATTGGCACAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCGTAGAGATGA
* * * *
96672859 GTGCCAGTATAAGACATGTTTGGGACATGCATCGACGTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGA-GATGA
* * *
96672906 -TAGCCAGTGTAAGACGTGTCTGGGACACGCATCGGC-TA-AGA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATG-A
*
96672950 GTGCTAGTGTAAGACATGTCTGGGACATG
1 GTGCCAGTGTAAGACATGTCTGGGACATG
96672979 AATCAACACA
Statistics
Matches: 140, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
43 1 0.01
44 26 0.19
45 2 0.01
46 23 0.16
47 59 0.42
48 29 0.21
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.23
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATGA
Found at i:96672864 original size:48 final size:47
Alignment explanation
Indices: 96672765--96673034 Score: 202
Period size: 47 Copynumber: 5.8 Consensus size: 47
96672755 AGTTTCTTGT
* **
96672765 GTGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCGTAGAGATGA
1 GTGCCAGTATAAGACATGTCTGGGACATGGCATCGGCACAGAGATGA
* *
96672811 GTGCCAGTATAAGACCATGTCTAGGACATGGCATTGGCACAGAGATGA
1 GTGCCAGTATAAGA-CATGTCTGGGACATGGCATCGGCACAGAGATGA
* * *
96672859 GTGCCAGTATAAGACATGTTTGGGACAT-GCATCGACGTC-GATGATGA
1 GTGCCAGTATAAGACATGTCTGGGACATGGCATCGGC-ACAGA-GATGA
* * * *
96672906 -TAGCCAGTGTAAGACGTGTCTGGGACA-CGCATCGGCTA-AGAG-T-T
1 GT-GCCAGTATAAGACATGTCTGGGACATGGCATCGGC-ACAGAGATGA
* * * ** *
96672950 GTGCTAGTGTAAGACATGTCTGGGACAT-GAATCAACACATGTATACT-A
1 GTGCCAGTATAAGACATGTCTGGGACATGGCATCGGCACA-G-AGA-TGA
* *
96672998 GAGCTAGTATAAGACCATGTCT-GGACATGGCATCGGC
1 GTGCCAGTATAAGA-CATGTCTGGGACATGGCATCGGC
96673035 CTCGATGATA
Statistics
Matches: 179, Mismatches: 29, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 29 0.16
45 3 0.02
46 24 0.13
47 62 0.35
48 48 0.27
49 12 0.07
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GTGCCAGTATAAGACATGTCTGGGACATGGCATCGGCACAGAGATGA
Found at i:96674657 original size:29 final size:29
Alignment explanation
Indices: 96674625--96674724 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
96674615 CTTCGAGCTC
96674625 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
96674654 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
96674683 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
96674712 GCACACTTAGTGC
1 GCACACTTAGTGC
96674725 TAATCTCGTC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:96674658 original size:58 final size:59
Alignment explanation
Indices: 96674565--96674724 Score: 200
Period size: 58 Copynumber: 2.7 Consensus size: 59
96674555 ATACTCGATT
** * ** * * *
96674565 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
96674623 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
96674682 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
96674725 TAATCTCGTC
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 85 0.94
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:96682070 original size:29 final size:29
Alignment explanation
Indices: 96682036--96682169 Score: 101
Period size: 29 Copynumber: 4.6 Consensus size: 29
96682026 TACTCGATTT
* * *
96682036 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
96682065 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
96682094 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
96682123 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
96682152 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
96682170 TATTTCCAGC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:96682128 original size:58 final size:59
Alignment explanation
Indices: 96682035--96682194 Score: 200
Period size: 58 Copynumber: 2.7 Consensus size: 59
96682025 ATACTCGATT
** * ** * * *
96682035 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
96682093 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
96682152 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
96682195 TAATCTCGTC
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 85 0.94
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:96682170 original size:29 final size:29
Alignment explanation
Indices: 96682095--96682194 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
96682085 CTTCGAGCTC
96682095 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
96682124 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
96682153 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
96682182 GCACACTTAGTGC
1 GCACACTTAGTGC
96682195 TAATCTCGTC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:96687161 original size:50 final size:51
Alignment explanation
Indices: 96687084--96687212 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
96687074 GACCATGGCA
* *
96687084 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAATTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
96687135 A-AAGTGATAAGTAACAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
96687185 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
96687213 CTGATCAGTG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 46 0.67
51 23 0.33
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:96687226 original size:31 final size:31
Alignment explanation
Indices: 96687188--96687336 Score: 208
Period size: 31 Copynumber: 4.8 Consensus size: 31
96687178 ACAAATGACA
96687188 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
96687219 AGTGAAAAGTGGTAGCTTCTGCTTCCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
96687250 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
96687281 AGTGAAAAATGGTAGCTCCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
96687312 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
96687337 AAGTGACAAG
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 104 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:96687419 original size:46 final size:47
Alignment explanation
Indices: 96687354--96687478 Score: 144
Period size: 46 Copynumber: 2.6 Consensus size: 47
96687344 AAGTGATTTC
* *
96687354 CGTATAAGACCATATCTGGGATATGGCATCAATAAGATATGTGATT-
1 CGTATAAGACCATAGCTGGGCTATGGCATCAATAAGATATGTGATTA
* ** **
96687400 CGTATAAGACCATAGCTGGGCTATGGTATTGGTATGTGATATGTGATTA
1 CGTATAAGACCATAGCTGGGCTATGGCA-T-CAATAAGATATGTGATTA
* *
96687449 CGCATAAGACCATAGCTGGGCTATGACATC
1 CGTATAAGACCATAGCTGGGCTATGGCATC
96687479 GATATATGAA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
46 25 0.38
47 1 0.02
48 14 0.22
49 25 0.38
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (47 bp):
CGTATAAGACCATAGCTGGGCTATGGCATCAATAAGATATGTGATTA
Found at i:96694669 original size:141 final size:141
Alignment explanation
Indices: 96694473--96694790 Score: 519
Period size: 141 Copynumber: 2.3 Consensus size: 141
96694463 GAGTGCCAGT
* * *
96694473 ATAAGACCATGTCTGGGACATAACATCGGCCTCGATGATGATAGCCAGTGTAAGACGTGTCTGGG
1 ATAAGACCATGTCTGGGACATGACATCGGCCTCGATGATAATAGCCAGTGTAAGACATGTCTGGG
* * *
96694538 ACACGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAACACGTGTATA
66 ACACGAATCGACTAAGAGTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAACACATGTATA
96694603 CGAGAGCTAGG
131 CGAGAGCTAGG
* *
96694614 ATAAGACCATGTCTGGGACATGGCATCGGCCTTGATGATAATAGCCAGTGTAAGACATGTCTGGG
1 ATAAGACCATGTCTGGGACATGACATCGGCCTCGATGATAATAGCCAGTGTAAGACATGTCTGGG
* * **
96694679 ACATGAATCGATTAAGAGTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGTACATGTATA
66 ACACGAATCGACTAAGAGTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAACACATGTATA
*
96694744 CGAGAGCTAGT
131 CGAGAGCTAGG
96694755 ATAAGACCATGTCTGGGACATGACATCGGCCTCGAT
1 ATAAGACCATGTCTGGGACATGACATCGGCCTCGAT
96694791 AGCCAGTGTA
Statistics
Matches: 162, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
141 162 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (141 bp):
ATAAGACCATGTCTGGGACATGACATCGGCCTCGATGATAATAGCCAGTGTAAGACATGTCTGGG
ACACGAATCGACTAAGAGTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAACACATGTATA
CGAGAGCTAGG
Found at i:96694677 original size:48 final size:47
Alignment explanation
Indices: 96694421--96694827 Score: 199
Period size: 44 Copynumber: 8.7 Consensus size: 47
96694411 TTTCTTGTGC
* * * * *
96694421 GCCAGTGTAAGACATGTCTAGGACATGCATTGGCGTAGA-GATGAGT-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGATGAT-AATA
* * * *
96694467 GCCAGTATAAGACCATGTCTGGGACATAACATCGGCCTCGATGATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGATGATAATA
* * * **
96694516 GCCAGTGTAAGACGTGTCTGGGACACGCATCGG-C-T-AAGAGTTGT-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGATGA-TAATA
* ** * *
96694560 GCTAGTGTAAGACATGTCTGGGACATGCATCAACACGTG-T-ATACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTTGATGATA--ATA
*
96694608 GCTAG-GATAAGACCATGTCTGGGACATGGCATCGGCCTTGATGATAATA
1 GCCAGTG-TAAGA-CATGTCTGGGACAT-GCATCGGCCTTGATGATAATA
* * * **
96694657 GCCAGTGTAAGACATGTCTGGGACATGAATC-G-ATT-AAGAGTTGT-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGATGA-TAATA
* * ** *
96694701 GCTAGTGTAAGACATGTCTGGGACATGCATCAG--TACATGTATACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGATG-ATA--ATA
* * *
96694749 GCTAGTATAAGACCATGTCTGGGACATGACATCGGCC-T--CG---ATA
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTTGATGATAATA
*
96694792 GCCAGTGTAAAACCATGTCTGGGACATGACATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGC
96694828 AACTTATCCC
Statistics
Matches: 282, Mismatches: 50, Indels: 61
0.72 0.13 0.16
Matches are distributed among these distances:
43 35 0.12
44 64 0.23
45 11 0.04
46 16 0.06
47 25 0.09
48 57 0.20
49 58 0.21
50 13 0.05
51 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGATGATAATA
Found at i:96697832 original size:15 final size:17
Alignment explanation
Indices: 96697812--96697846 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
96697802 AATTTATAAA
96697812 TTTATTT-TTTT-CTTT
1 TTTATTTGTTTTCCTTT
96697827 TTTATTTGTTTTCCTTT
1 TTTATTTGTTTTCCTTT
96697844 TTT
1 TTT
96697847 TATGAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 4 0.22
17 7 0.39
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.83
Consensus pattern (17 bp):
TTTATTTGTTTTCCTTT
Found at i:96697844 original size:16 final size:15
Alignment explanation
Indices: 96697812--96697845 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
96697802 AATTTATAAA
*
96697812 TTTATTTTTTTCTTT
1 TTTATTTTTTTCCTT
96697827 TTTATTTGTTTTCCTT
1 TTTATTT-TTTTCCTT
96697843 TTT
1 TTT
96697846 TTATGAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTATTTTTTTCCTT
Found at i:96699248 original size:87 final size:87
Alignment explanation
Indices: 96699102--96699260 Score: 264
Period size: 87 Copynumber: 1.8 Consensus size: 87
96699092 TGTTTACCAT
**
96699102 TTTGTTCTTTGGGATTTTGAGCTTTGCATTCGAGGTTTTATGTGATGGAAGTTTAGTACATTTAG
1 TTTGTTCTTTAAGATTTTGAGCTTTGCATTCGAGGTTTTATGTGATGGAAGTTTAGTACATTTAG
96699167 GTTAATTCTCTTCATATGCCGG
66 GTTAATTCTCTTCATATGCCGG
* * * *
96699189 TTTGTTCTTTAAGATTTTGAGCTTTGTATTTGGGGTTTTGTGTGATGGAAGTTTAGTACATTTAG
1 TTTGTTCTTTAAGATTTTGAGCTTTGCATTCGAGGTTTTATGTGATGGAAGTTTAGTACATTTAG
96699254 GTTAATT
66 GTTAATT
96699261 TTTTTCCATA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 66 1.00
ACGTcount: A:0.19, C:0.08, G:0.25, T:0.48
Consensus pattern (87 bp):
TTTGTTCTTTAAGATTTTGAGCTTTGCATTCGAGGTTTTATGTGATGGAAGTTTAGTACATTTAG
GTTAATTCTCTTCATATGCCGG
Found at i:96700955 original size:20 final size:22
Alignment explanation
Indices: 96700907--96700955 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
96700897 GTGGGGTGTA
*
96700907 CCTAGTTAAACTCTACTAGCTTTT
1 CCTAGTTAAACTCTAC-A-CTTAT
96700931 CCTAGTTAAACTCTA-A-TTAT
1 CCTAGTTAAACTCTACACTTAT
96700951 CCTAG
1 CCTAG
96700956 GGATATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 8 0.33
22 1 0.04
24 15 0.62
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (22 bp):
CCTAGTTAAACTCTACACTTAT
Found at i:96710015 original size:2 final size:2
Alignment explanation
Indices: 96710008--96710037 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
96709998 GCCCAATTAG
96710008 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96710038 GGCATTGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96712040 original size:32 final size:32
Alignment explanation
Indices: 96712004--96712067 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
96711994 ACCAGAAGAG
96712004 AAAGGAATTCCTGGAATTGAAACAAGGTAATA
1 AAAGGAATTCCTGGAATTGAAACAAGGTAATA
96712036 AAAGGAATTCCTGGAATTGAAACAAGGTAATA
1 AAAGGAATTCCTGGAATTGAAACAAGGTAATA
96712068 TAATAGTGAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.47, C:0.09, G:0.22, T:0.22
Consensus pattern (32 bp):
AAAGGAATTCCTGGAATTGAAACAAGGTAATA
Found at i:96714004 original size:24 final size:24
Alignment explanation
Indices: 96713953--96714141 Score: 260
Period size: 24 Copynumber: 8.0 Consensus size: 24
96713943 GCTTTATCAT
*
96713953 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
96713978 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
96714002 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
96714025 ATAACTGGGGCATAAGGCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
96714049 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
**
96714072 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
*
96714096 ATAACTGGGGCATAAGTCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
96714119 ATAACTGGGGCATAAGCTCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
96714142 GCACTTCCTC
Statistics
Matches: 146, Mismatches: 14, Indels: 9
0.86 0.08 0.05
Matches are distributed among these distances:
23 63 0.43
24 71 0.49
25 12 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:96714028 original size:23 final size:23
Alignment explanation
Indices: 96713974--96714140 Score: 253
Period size: 23 Copynumber: 7.1 Consensus size: 23
96713964 CCTAGCCTCT
*
96713974 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
96713997 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
96714021 TTTAATAACTGGGGCATAAGGCCT
1 TTTAATAACTGGGGCATAA-GCCC
*
96714045 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
96714068 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
96714091 TTTCGATAACTGGGGCATAAGTCC
1 TTT-AATAACTGGGGCATAAGCCC
*
96714115 TTTAATAACTGGGGCATAAGCTC
1 TTTAATAACTGGGGCATAAGCCC
96714138 TTT
1 TTT
96714141 TGCACTTCCT
Statistics
Matches: 131, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
23 67 0.51
24 64 0.49
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:96714028 original size:47 final size:47
Alignment explanation
Indices: 96713974--96714142 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
96713964 CCTAGCCTCT
* *
96713974 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
96714021 TTTAATAACTGGGGCATAAGGCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
* *
96714068 TTTAATAACTGGGGCATAAGCCCTTTCGATAACTGGGGCATAAGTCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
96714115 TTTAATAACTGGGGCATAAGCTCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
96714143 CACTTCCTCC
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 114 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:96714213 original size:9 final size:9
Alignment explanation
Indices: 96714199--96714255 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
96714189 ATCTCATGTG
96714199 CATATCATA
1 CATATCATA
*
96714208 CATATCATGTG
1 CATATCA--TA
96714219 CATATCATA
1 CATATCATA
* *
96714228 CATGTCATGTG
1 CATATCA--TA
96714239 CATATCATA
1 CATATCATA
96714248 CATATCAT
1 CATATCAT
96714256 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:96714215 original size:20 final size:20
Alignment explanation
Indices: 96714187--96714257 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
96714177 GCATTTATGA
*
96714187 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
96714207 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
96714227 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
96714247 ACATATCATGT
1 ACATATCATGT
96714258 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:96714222 original size:11 final size:11
Alignment explanation
Indices: 96714192--96714246 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
96714182 TATGAACATC
96714192 TCATGTGCATA
1 TCATGTGCATA
*
96714203 TCA--TACATA
1 TCATGTGCATA
96714212 TCATGTGCATA
1 TCATGTGCATA
* *
96714223 TCA--TACATG
1 TCATGTGCATA
96714232 TCATGTGCATA
1 TCATGTGCATA
96714243 TCAT
1 TCAT
96714247 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:96714322 original size:25 final size:25
Alignment explanation
Indices: 96714294--96714341 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96714284 ATATATAAAC
* * *
96714294 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGATCATTTTTA
96714319 CCTAGGGGCAAAATGATCATTTT
1 CCTAGGGGCAAAATGATCATTTT
96714342 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGATCATTTTTA
Found at i:96725291 original size:29 final size:29
Alignment explanation
Indices: 96725259--96725336 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
96725249 ATACCCTCCG
** *
96725259 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
96725288 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
96725317 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
96725337 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:96740095 original size:19 final size:21
Alignment explanation
Indices: 96740069--96740114 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
96740059 GTGTGACCCA
96740069 TGTTTCCAAAATTTTC-ATTT
1 TGTTTCCAAAATTTTCTATTT
* *
96740089 T-TTTCCATATTTTTCTATTT
1 TGTTTCCAAAATTTTCTATTT
96740109 TGTTTC
1 TGTTTC
96740115 AAATTGGTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 12 0.55
20 6 0.27
21 4 0.18
ACGTcount: A:0.17, C:0.15, G:0.04, T:0.63
Consensus pattern (21 bp):
TGTTTCCAAAATTTTCTATTT
Found at i:96740267 original size:17 final size:18
Alignment explanation
Indices: 96740234--96740267 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
96740224 ATTAATAAAC
96740234 AATTGGTTTGATGATGTT
1 AATTGGTTTGATGATGTT
*
96740252 AATTGTTTTGAT-ATGT
1 AATTGGTTTGATGATGT
96740268 GTCGTAATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (18 bp):
AATTGGTTTGATGATGTT
Found at i:96742047 original size:75 final size:75
Alignment explanation
Indices: 96741943--96742131 Score: 252
Period size: 75 Copynumber: 2.5 Consensus size: 75
96741933 TAGGATTACA
* * ** * * **
96741943 AAGATTTTGCAAATGCTAATTAACAGTGATTCCAATACAATACTAAGATTACAAAGATTTTGGAG
1 AAGATTTTGCAAATGCAAATGAATGGTGATTCTAATACAATACTAAGATAACAAAGATTTTACAG
96742008 ACATAGTACT
66 ACATAGTACT
* *
96742018 AGGATTTTGCAAATGCAAATGAATGGTGATTCTAATACAATACTAAGATAATAAAGATTTTACAG
1 AAGATTTTGCAAATGCAAATGAATGGTGATTCTAATACAATACTAAGATAACAAAGATTTTACAG
* **
96742083 ATATAGTTTT
66 ACATAGTACT
*
96742093 AAGATTTTGCAAATGTAAATGAATGGTGATTCTAATACA
1 AAGATTTTGCAAATGCAAATGAATGGTGATTCTAATACA
96742132 TTTACCATGG
Statistics
Matches: 99, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 99 1.00
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (75 bp):
AAGATTTTGCAAATGCAAATGAATGGTGATTCTAATACAATACTAAGATAACAAAGATTTTACAG
ACATAGTACT
Found at i:96745075 original size:26 final size:26
Alignment explanation
Indices: 96745046--96745120 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
96745036 ATCTGATGAG
96745046 CTGAAACATC-GATAAGCTCATACAAA
1 CTGAAACATCAG-TAAGCTCATACAAA
*
96745072 CTGAAACATCAGTAAGCTCATACGAA
1 CTGAAACATCAGTAAGCTCATACAAA
*
96745098 CTAAAACATCAGTAAGCTCATAC
1 CTGAAACATCAGTAAGCTCATAC
96745121 GAGCTGTGGT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 45 0.98
27 1 0.02
ACGTcount: A:0.44, C:0.24, G:0.12, T:0.20
Consensus pattern (26 bp):
CTGAAACATCAGTAAGCTCATACAAA
Found at i:96759642 original size:5 final size:5
Alignment explanation
Indices: 96759617--96759659 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
96759607 AAGTAAATGT
* *
96759617 TATTA AATTA TATTA AATTA TATTA TA-TA TTATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA -TATTA TATTA TAT
96759660 AATTAAAAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
4 2 0.06
5 28 0.88
6 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
TATTA
Found at i:96760810 original size:22 final size:22
Alignment explanation
Indices: 96760759--96760862 Score: 136
Period size: 22 Copynumber: 4.6 Consensus size: 22
96760749 GGAACTTTAG
*
96760759 CGTGCTCTCTGATTATTAGTACATT
1 CGTGCTCTCTG--T-TTAGCACATT
*
96760784 AGTGCTCTCTGTTTAGCACATT
1 CGTGCTCTCTGTTTAGCACATT
96760806 CGTGCTCTCTGTTTAGCACATT
1 CGTGCTCTCTGTTTAGCACATT
* *
96760828 CGTGCTCTCTGTATAGCACTTT
1 CGTGCTCTCTGTTTAGCACATT
*
96760850 AGTGCTCTCTGTT
1 CGTGCTCTCTGTT
96760863 CATTAGTGCA
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
22 61 0.85
23 1 0.01
25 10 0.14
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.42
Consensus pattern (22 bp):
CGTGCTCTCTGTTTAGCACATT
Found at i:96761957 original size:23 final size:23
Alignment explanation
Indices: 96761939--96761994 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
96761929 AGCTCTATTG
*
96761939 AGCTGAAACAATAATCTCTGACA
1 AGCTGAAACAATAAGCTCTGACA
96761962 AGCTGAAACAATAAGCTCTGACA
1 AGCTGAAACAATAAGCTCTGACA
96761985 AGCTGAAACA
1 AGCTGAAACA
96761995 TCGGTAAGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.45, C:0.21, G:0.16, T:0.18
Consensus pattern (23 bp):
AGCTGAAACAATAAGCTCTGACA
Found at i:96763509 original size:29 final size:29
Alignment explanation
Indices: 96763481--96763583 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
96763471 CCTCCGAGCT
** * * *
96763481 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
96763510 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
96763539 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
96763568 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
96763584 ATCTCGACAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:96771595 original size:29 final size:29
Alignment explanation
Indices: 96771567--96771669 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
96771557 CCTCCGAGCT
** * * *
96771567 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
96771596 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
96771625 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
96771654 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
96771670 ATCTCGACAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:96782208 original size:30 final size:30
Alignment explanation
Indices: 96782172--96782232 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
96782162 TCCTTAACTC
96782172 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
96782202 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
96782232 A
1 A
96782233 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:96786279 original size:42 final size:42
Alignment explanation
Indices: 96786226--96786345 Score: 170
Period size: 43 Copynumber: 2.8 Consensus size: 42
96786216 AGGGCTACTA
*
96786226 AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATATG
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATACG
* *
96786268 AGACTT-CGTGTAAGACCATACCTGGGCTATTGGCATCGATACG
1 AGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATACG
* *
96786311 AGATTACATGTAAGACCATATCTAGGATATGGCAT
1 AGATTACGTGTAAGACCATATCTGGGATATGGCAT
96786346 TGGTACGGTA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATACG
Found at i:96794895 original size:27 final size:27
Alignment explanation
Indices: 96794828--96794927 Score: 103
Period size: 27 Copynumber: 3.5 Consensus size: 27
96794818 GACAAGATTG
* * *
96794828 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATT-TATA
96794858 GCACTAAGTGTGCGAGTTTGATTTATA
1 GCACTAAGTGTGCGAGTTTGATTTATA
*
96794885 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT--TTATA
96794914 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
96794928 GATTCACTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
26 3 0.05
27 21 0.33
28 3 0.05
29 18 0.29
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTTGATTTATA
Found at i:96802828 original size:28 final size:28
Alignment explanation
Indices: 96802759--96802859 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
96802749 GACAAGATTG
* * * *
96802759 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
96802789 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
96802817 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
96802846 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
96802860 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:96811752 original size:40 final size:40
Alignment explanation
Indices: 96811688--96811784 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
96811678 ACTCGATATC
* *
96811688 TCGCACACTAAGTGTCATACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCAAAGCTATCTCAAA
* * * *
96811728 TCGCACACTAAGTGCCATATATAGCCAAAGTTATGTCGAA
1 TCGCACACTAAGTGCCATACATAGCCAAAGCTATCTCAAA
*
96811768 TTGCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
96811785 CAAATAGCTG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCAAAGCTATCTCAAA
Found at i:96812965 original size:20 final size:20
Alignment explanation
Indices: 96812940--96812977 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
96812930 TAATTTTTAA
96812940 TTAATTAAATAAATAAATTT
1 TTAATTAAATAAATAAATTT
*
96812960 TTAATTAATTAAATAAAT
1 TTAATTAAATAAATAAAT
96812978 AATCATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAATTAAATAAATAAATTT
Found at i:96812987 original size:28 final size:24
Alignment explanation
Indices: 96812931--96812979 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
96812921 ATAATTAATT
96812931 AATTTTTAATTAATTAAATAAATA
1 AATTTTTAATTAATTAAATAAATA
96812955 AATTTTTAATTAATTAAATAAATA
1 AATTTTTAATTAATTAAATAAATA
96812979 A
1 A
96812980 TCATATTTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
AATTTTTAATTAATTAAATAAATA
Found at i:96813298 original size:23 final size:22
Alignment explanation
Indices: 96813255--96813298 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
96813245 GAAATTTATA
*
96813255 TTTTTTTAATTTGGTACTTAAT
1 TTTTTTTAATTTGATACTTAAT
* *
96813277 TTTTTTCTAATTTTATATTTAA
1 TTTTTT-TAATTTGATACTTAA
96813299 ATTTATTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.66
Consensus pattern (22 bp):
TTTTTTTAATTTGATACTTAAT
Found at i:96831690 original size:27 final size:27
Alignment explanation
Indices: 96831652--96831791 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
96831642 GGGACGAAAT
*
96831652 AATGACCGAAATACCCCCATAAGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
96831679 AATGACCGAAATATCCCCATATGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
96831706 AATAACCAAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
** *
96831733 AATGACTTAAATA-CCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
**
96831759 AATGACCGAAATACCCCTGTAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
96831786 AATGAC
1 AATGAC
96831792 TATAATACCC
Statistics
Matches: 99, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 23 0.23
27 76 0.77
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAGGGTAA
Found at i:96831782 original size:53 final size:52
Alignment explanation
Indices: 96831652--96831802 Score: 194
Period size: 53 Copynumber: 2.8 Consensus size: 52
96831642 GGGACGAAAT
* * * *
96831652 AATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATATCCCCATATGGTAA
1 AATGACCGAAATACCCCCATAGGGTAAAATGA-CTAAATA-CCCTATAGGGTAA
* *
96831706 AATAACCAAAATACCCCCATAGGGTAAAATGACTTAAATACCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAAAATGAC-TAAATACCCTATAGGGTAA
**
96831759 AATGACCGAAATACCCCTGTAGGGTAAAATGACTATAATACCCT
1 AATGACCGAAATACCCCCATAGGGTAAAATGACTA-AATACCCT
96831803 TGTAAGGTAA
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 2 0.02
53 49 0.58
54 34 0.40
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.21
Consensus pattern (52 bp):
AATGACCGAAATACCCCCATAGGGTAAAATGACTAAATACCCTATAGGGTAA
Found at i:96831798 original size:27 final size:27
Alignment explanation
Indices: 96831661--96831815 Score: 122
Period size: 27 Copynumber: 5.8 Consensus size: 27
96831651 TAATGACCGA
* * *
96831661 AATACCCCCATAAGGTAAAATGACCGA-
1 AATACCCCTATAGGGTAAAATGA-CTAT
* * * *
96831688 AATATCCCC-ATATGGTAAAATAACCAA
1 AATA-CCCCTATAGGGTAAAATGACTAT
*
96831715 AATACCCCCATAGGGTAAAATGACT-T
1 AATACCCCTATAGGGTAAAATGACTAT
*
96831741 AAATA-CCCTATAGGGTAAAATGACCGA-
1 -AATACCCCTATAGGGTAAAATGA-CTAT
*
96831768 AATACCCCTGTAGGGTAAAATGACTAT
1 AATACCCCTATAGGGTAAAATGACTAT
* * *
96831795 AATACCCTTGTAAGGTAAAAT
1 AATACCCCTATAGGGTAAAAT
96831816 TATTGTTTTT
Statistics
Matches: 107, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
26 29 0.27
27 74 0.69
28 4 0.04
ACGTcount: A:0.43, C:0.21, G:0.15, T:0.22
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAATGACTAT
Found at i:96831812 original size:80 final size:81
Alignment explanation
Indices: 96831660--96831815 Score: 190
Period size: 80 Copynumber: 1.9 Consensus size: 81
96831650 ATAATGACCG
*
96831660 AAATACCCCCATAAGGTAAAATGACCGAAATATCCCCATATGGTAAAATAACCAAAATACCCCCA
1 AAATACCCCCATAAGGTAAAATGACCGAAATATCCCCATAGGGTAAAATAACCAAAATACCCCCA
*
96831725 TAGGGTAAAATGACTT
66 TAAGGTAAAATGACTT
* * * * * * **
96831741 AAATA-CCCTATAGGGTAAAATGACCGAAATA-CCCCTGTAGGGTAAAATGACTATAATACCCTT
1 AAATACCCCCATAAGGTAAAATGACCGAAATATCCCC-ATAGGGTAAAATAACCAAAATACCCCC
*
96831804 GTAAGGTAAAAT
65 ATAAGGTAAAAT
96831816 TATTGTTTTT
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
79 4 0.06
80 54 0.86
81 5 0.08
ACGTcount: A:0.43, C:0.21, G:0.15, T:0.22
Consensus pattern (81 bp):
AAATACCCCCATAAGGTAAAATGACCGAAATATCCCCATAGGGTAAAATAACCAAAATACCCCCA
TAAGGTAAAATGACTT
Found at i:96831840 original size:27 final size:28
Alignment explanation
Indices: 96831810--96831869 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
96831800 CCTTGTAAGG
* *
96831810 TAAAATT-ATTGTTTTTACCTTATGTGT
1 TAAAATTGATGGTTTTTACCTTATGTAT
*
96831837 T-AAATTGATGGTTTTTCCCTTATGTAT
1 TAAAATTGATGGTTTTTACCTTATGTAT
96831864 TAAAAT
1 TAAAAT
96831870 GGCGATTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.18
27 19 0.68
28 4 0.14
ACGTcount: A:0.28, C:0.08, G:0.12, T:0.52
Consensus pattern (28 bp):
TAAAATTGATGGTTTTTACCTTATGTAT
Found at i:96831878 original size:27 final size:27
Alignment explanation
Indices: 96831821--96831887 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
96831811 AAAATTATTG
* * * * *
96831821 TTTTTACCTTATGTGTTAAATTGATGG
1 TTTTTCCCTTATGTATTAAAATGACGA
*
96831848 TTTTTCCCTTATGTATTAAAATGGCGA
1 TTTTTCCCTTATGTATTAAAATGACGA
*
96831875 TTTTGCCCTTATG
1 TTTTTCCCTTATG
96831888 ACAGTTTTGC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.21, C:0.13, G:0.16, T:0.49
Consensus pattern (27 bp):
TTTTTCCCTTATGTATTAAAATGACGA
Found at i:96832283 original size:18 final size:18
Alignment explanation
Indices: 96832260--96832327 Score: 91
Period size: 18 Copynumber: 3.8 Consensus size: 18
96832250 TGCATACTAC
*
96832260 TTACTGTTATTGCACTGT
1 TTACTGTTACTGCACTGT
* * *
96832278 TTACTGTCATTGCACTGA
1 TTACTGTTACTGCACTGT
*
96832296 TTACTGTTACTGCGCTGT
1 TTACTGTTACTGCACTGT
96832314 TTACTGTTACTGCA
1 TTACTGTTACTGCA
96832328 ATGGGCCAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (18 bp):
TTACTGTTACTGCACTGT
Found at i:96836620 original size:41 final size:41
Alignment explanation
Indices: 96836563--96836645 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
96836553 TTCGAGAAAA
*
96836563 AAAGATGCTATCTGAGTCATGGTTGACCGATTGACGAAATT
1 AAAGATGCTATCTGAGTCATGGCTGACCGATTGACGAAATT
96836604 AAAGATGCTATCTGAGTCATGGCTGACCGATTGACGAAATT
1 AAAGATGCTATCTGAGTCATGGCTGACCGATTGACGAAATT
96836645 A
1 A
96836646 GCCCATTTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.28
Consensus pattern (41 bp):
AAAGATGCTATCTGAGTCATGGCTGACCGATTGACGAAATT
Found at i:96838919 original size:42 final size:43
Alignment explanation
Indices: 96838817--96838974 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
96838807 ATGTGTTATT
* * *
96838817 GTGTAAGACCACATCTGGGACGTTGGCATCGAT-TTATGGTTTTC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATT-T-GATTTC
96838861 GTGTAAGACCACGTCTGGGACATTGGCATC-ATATTTGATTTC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTC
* * * * *
96838903 GTGTAAG-CCCCTGTCTGGGATAGTGGCTTCGATATTTGATTGC
1 GTGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTTC
* *
96838946 ATATAAGACCACGTCTGGGACATTGGCAT
1 GTGTAAGACCACGTCTGGGACATTGGCAT
96838975 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
41 3 0.03
42 27 0.28
43 33 0.34
44 33 0.34
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTC
Found at i:96841434 original size:28 final size:28
Alignment explanation
Indices: 96841402--96841500 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
96841392 TGCATAAGCC
*
96841402 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
96841430 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
96841458 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
96841487 CGCACACTTAGTGC
1 CGCACACTTAGTGC
96841501 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:96849105 original size:28 final size:28
Alignment explanation
Indices: 96849073--96849171 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
96849063 GCAATAAGCC
*
96849073 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
96849101 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
96849129 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
96849158 CGCACACTTAGTGC
1 CGCACACTTAGTGC
96849172 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:96851652 original size:18 final size:17
Alignment explanation
Indices: 96851622--96851656 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
96851612 CGATATGTAT
*
96851622 TAAAAATAGTAATAATA
1 TAAAAATACTAATAATA
96851639 TAAAAATAACTAATAATA
1 TAAAAAT-ACTAATAATA
96851657 ACGATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (17 bp):
TAAAAATACTAATAATA
Found at i:96851728 original size:21 final size:20
Alignment explanation
Indices: 96851704--96851747 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
96851694 ATACGTAATA
96851704 ATAGGAATAAAAAGTATATAC
1 ATAGGAATAAAAA-TATATAC
* *
96851725 ATAGTATTAAAAATATATAC
1 ATAGGAATAAAAATATATAC
96851745 ATA
1 ATA
96851748 ATATATACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (20 bp):
ATAGGAATAAAAATATATAC
Found at i:96851750 original size:11 final size:11
Alignment explanation
Indices: 96851718--96851758 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
96851708 GAATAAAAAG
*
96851718 TATATACATAG
1 TATATACATAA
*
96851729 TAT-TA-AAAA
1 TATATACATAA
96851738 TATATACATAA
1 TATATACATAA
96851749 TATATACATA
1 TATATACATA
96851759 TTAGAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 5 0.20
10 4 0.16
11 16 0.64
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (11 bp):
TATATACATAA
Found at i:96851788 original size:16 final size:18
Alignment explanation
Indices: 96851756--96851788 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
96851746 TAATATATAC
96851756 ATATTAGAAATAACAATA
1 ATATTAGAAATAACAATA
96851774 ATATTA-AAA-AACAAT
1 ATATTAGAAATAACAAT
96851789 TATTACATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 3 0.20
18 6 0.40
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (18 bp):
ATATTAGAAATAACAATA
Found at i:96852008 original size:23 final size:23
Alignment explanation
Indices: 96851977--96852020 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
96851967 ATTGAGTATT
* *
96851977 AAAAGTATATATATAATATAGAC
1 AAAAATATATACATAATATAGAC
*
96852000 AAAAATATATGCATAATATAG
1 AAAAATATATACATAATATAG
96852021 TGTTGAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (23 bp):
AAAAATATATACATAATATAGAC
Found at i:96852073 original size:25 final size:24
Alignment explanation
Indices: 96852045--96852134 Score: 67
Period size: 25 Copynumber: 3.6 Consensus size: 24
96852035 ACACGGGATA
* *
96852045 ATATAAAAAATGTATGA-ATAATGT
1 ATATAAAAAATATAT-ACATAATAT
*
96852069 GATATTAAAAATATATACATAATAT
1 -ATATAAAAAATATATACATAATAT
*
96852094 ATATAAAAATATAATATTA-AAAATAT
1 ATATAAAAA-AT-ATA-TACATAATAT
* *
96852120 ATATACATAATATAT
1 ATATAAAAAATATAT
96852135 GTAAAATGTA
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
23 1 0.02
24 12 0.22
25 23 0.43
26 16 0.30
27 2 0.04
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (24 bp):
ATATAAAAAATATATACATAATAT
Found at i:96852101 original size:22 final size:22
Alignment explanation
Indices: 96852076--96852207 Score: 105
Period size: 22 Copynumber: 6.0 Consensus size: 22
96852066 TGTGATATTA
96852076 AAAATATATACATAATATATAT
1 AAAATATATACATAATATATAT
96852098 AAAA-ATATA-AT-AT-TA-A-
1 AAAATATATACATAATATATAT
*
96852114 AAATATATATACATAATATATGT
1 AAA-ATATATACATAATATATAT
*
96852137 AAAATGTATACATAATATAGTTAT
1 AAAATATATACATAATATA--TAT
* * *
96852161 AAAAAATATATACAATATATAGT
1 AAAATATATACATAATATATA-T
* *
96852184 ATTAATAATATACACAATATATAT
1 A-AAAT-ATATACATAATATATAT
96852208 GGTATTAAAA
Statistics
Matches: 88, Mismatches: 10, Indels: 22
0.73 0.08 0.18
Matches are distributed among these distances:
16 3 0.03
17 2 0.02
18 7 0.08
19 4 0.05
20 4 0.05
21 7 0.08
22 21 0.24
23 5 0.06
24 20 0.23
25 15 0.17
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.36
Consensus pattern (22 bp):
AAAATATATACATAATATATAT
Found at i:96852180 original size:11 final size:11
Alignment explanation
Indices: 96852076--96852181 Score: 68
Period size: 11 Copynumber: 8.9 Consensus size: 11
96852066 TGTGATATTA
*
96852076 AAAATATATAC
1 AAAATATATAT
*
96852087 ATAATATATAT
1 AAAATATATAT
96852098 AAAAATATAATATT
1 -AAAATAT-ATA-T
96852112 AAAAATATATAT
1 -AAAATATATAT
*
96852124 ACATAATATATGT
1 A-A-AATATATAT
* *
96852137 AAAATGTATAC
1 AAAATATATAT
*
96852148 ATAATATAGTTAT
1 AAAATATA--TAT
*
96852161 AAAAAATATAT
1 AAAATATATAT
*
96852172 ACAATATATA
1 AAAATATATA
96852182 GTATTAATAA
Statistics
Matches: 74, Mismatches: 14, Indels: 14
0.73 0.14 0.14
Matches are distributed among these distances:
11 33 0.45
12 9 0.12
13 23 0.31
14 9 0.12
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (11 bp):
AAAATATATAT
Found at i:96852200 original size:25 final size:25
Alignment explanation
Indices: 96852151--96852219 Score: 84
Period size: 25 Copynumber: 2.6 Consensus size: 25
96852141 TGTATACATA
* *
96852151 ATATAGTTATAAAAAATATATACAAT
1 ATATAG-TATTAAAAATATACACAAT
*
96852177 ATATAGTATTAATAATATACACAAT
1 ATATAGTATTAAAAATATACACAAT
96852202 ATATATGGTATTAAAAAT
1 ATATA--GTATTAAAAAT
96852220 TTAGTATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 21 0.57
26 6 0.16
27 10 0.27
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (25 bp):
ATATAGTATTAAAAATATACACAAT
Found at i:96854370 original size:21 final size:21
Alignment explanation
Indices: 96854345--96854398 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
96854335 AAGATAAGAT
**
96854345 CTGCAACTTCAATGTGCTCTA
1 CTGCAACTTCAATCAGCTCTA
*
96854366 CTGCAACTTCGATCAGCTCTA
1 CTGCAACTTCAATCAGCTCTA
96854387 CTGCAACTTCAA
1 CTGCAACTTCAA
96854399 GGAGGCAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (21 bp):
CTGCAACTTCAATCAGCTCTA
Found at i:96854659 original size:87 final size:87
Alignment explanation
Indices: 96854456--96854666 Score: 239
Period size: 89 Copynumber: 2.4 Consensus size: 87
96854446 ATGCGACTCG
* * * * * * *
96854456 AGGCTCAACTCACCTCTTGCAATATGAGATGACTTTTTGGAAAGCAGACATTAAAAACAGAACTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTATGAAAAACAGACATTAAAAACAAAAATT
*
96854521 GAAAATACCTCAGCATATGACCCG
65 GAAAATACCTCAGCA-ATGACCCA
* *
96854545 AGGCTCAACTCACCTCTCGCAACATGAGTTGATTTGAT-AAAAATAGA-ATTTGAAAAACAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-ATGAAAAACAGACA-TT-AAAAACAAAAA
* * *
96854608 TTGAAACTACCTCAGC-GTGTCCCA
63 TTGAAAATACCTCAGCAATGACCCA
96854632 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
96854667 TTTTTAAAAA
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
87 40 0.38
88 11 0.10
89 54 0.51
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATGAAAAACAGACATTAAAAACAAAAATTG
AAAATACCTCAGCAATGACCCA
Found at i:96854723 original size:76 final size:76
Alignment explanation
Indices: 96854593--96855005 Score: 428
Period size: 76 Copynumber: 5.3 Consensus size: 76
96854583 AAAAATAGAA
* * * *
96854593 TTTG-AAAAACAAAAATTGAAACTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTTGAAAAAACATAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
96854657 GAGTTGATTTT
66 GAGTTGATTTT
* * * *
96854668 TTTTAAAAAACATAAATTGAAAATACCTCATCGTAACCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTTGAAAAAACATAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
96854733 GAGTTTATTTT
66 GAGTTGATTTT
* *
96854744 TTTGAAAAATA-A-ACATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCT-TCGCAA
1 TTTGAAAAA-ACATAAATTGAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAA
96854806 TATGAGTTGA--TT
63 TATGAGTTGATTTT
* * * *
96854818 TTT-AAAAAACATAAATTGAAAATACGTCATCGTGACCTGAGGCTCAACTCACCTTTCGCAATAT
1 TTTGAAAAAACATAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
96854882 GAGTTGATTTT
66 GAGTTGATTTT
* *
96854893 TTTGAAAAATAAGCATTAAAAATAGAATTTGAAAATACCTCGACGTGTGACTCGAGGCTCAACTC
1 TTTG-AAAA-AA-C-------ATA-AA-TTGAAAATACCTC-A-GCGTGACCCGAGGCTCAACTC
*
96854958 ACCTCTCGCAATATGAGTTGA-TTC
52 ACCTCTCGCAATATGAGTTGATTTT
* *
96854982 TTGGAAAAAAACAGAAATTGAAAA
1 TTTG-AAAAAACATAAATTGAAAA
96855006 ACAGAATTTT
Statistics
Matches: 284, Mismatches: 30, Indels: 45
0.79 0.08 0.13
Matches are distributed among these distances:
72 23 0.08
73 22 0.08
74 20 0.07
75 24 0.08
76 87 0.31
77 26 0.09
78 9 0.03
79 3 0.01
80 2 0.01
86 3 0.01
87 3 0.01
88 14 0.05
89 11 0.04
90 37 0.13
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (76 bp):
TTTGAAAAAACATAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTT
Found at i:96854865 original size:149 final size:150
Alignment explanation
Indices: 96854593--96854914 Score: 490
Period size: 149 Copynumber: 2.1 Consensus size: 150
96854583 AAAAATAGAA
* * *
96854593 TTTGAAAAACAAAAATTG-AAACTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTTGAAAAATAAACATTGAAAACTACCTCAGCGTGACCCAAGGCTCAACTCACCTCTCGCAATAT
96854657 GAGTTGATTTTTTTTAAAAAACATAAATTGAAAATACCTCATCGTAACCTGAGGCTCAACTCACC
66 GAGTTGA--TTTTTTAAAAAACATAAATTGAAAATACCTCATCGTAACCTGAGGCTCAACTCACC
*
96854722 TCTCGCAATATGAGTTTATTTT
129 TCTCGCAATATGAGTTGATTTT
*
96854744 TTTGAAAAATAAACATTGAAAAC-ACCTCAGCATGTGACCCGAGGCTCAACTCACCT-TCGCAAT
1 TTTGAAAAATAAACATTGAAAACTACCTCAGC--GTGACCCAAGGCTCAACTCACCTCTCGCAAT
* *
96854807 ATGAGTTGA-TTTTTAAAAAACATAAATTGAAAATACGTCATCGTGACCTGAGGCTCAACTCACC
64 ATGAGTTGATTTTTTAAAAAACATAAATTGAAAATACCTCATCGTAACCTGAGGCTCAACTCACC
*
96854871 TTTCGCAATATGAGTTGATTTT
129 TCTCGCAATATGAGTTGATTTT
* *
96854893 TTTGAAAAATAAGCATTAAAAA
1 TTTGAAAAATAAACATTGAAAA
96854915 TAGAATTTGA
Statistics
Matches: 158, Mismatches: 10, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
149 93 0.59
151 24 0.15
152 20 0.13
153 21 0.13
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (150 bp):
TTTGAAAAATAAACATTGAAAACTACCTCAGCGTGACCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTAAAAAACATAAATTGAAAATACCTCATCGTAACCTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTT
Found at i:96855051 original size:93 final size:92
Alignment explanation
Indices: 96854856--96855188 Score: 444
Period size: 91 Copynumber: 3.6 Consensus size: 92
96854846 ATCGTGACCT
* * *
96854856 GAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTG-AAAAATA-AGCATT-AAAAATAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTCTTTGAAAAAATAGA-AATTGAAAAATAG
* * *
96854918 AA-TTTGAAAATACCTCGACGTGTGACTC
64 AATTTTGAAAATACCTCGACATGTAATTC
* * *
96854946 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTGGAAAAAAACAGAAATTGAAAAACAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTG-AAAAAATAGAAATTGAAAAATAGA
*
96855011 ATTTTGAAAATATCTCGACATGTAATTC
65 ATTTTGAAAATACCTCGACATGTAATTC
* * * *
96855039 AATGCTCAACTCATCTCTCGTAATATGAGTTGATTC-TTGAAAAAATAGAAATTGAAAAATAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTGAAAAAATAGAAATTGAAAAATAGAA
96855103 TTTTGAAAATACCTCGACATGTAATTC
66 TTTTGAAAATACCTCGACATGTAATTC
* *
96855130 GAGGCTCAACTCATCTCTCGCAATATGAGTTGATATTTTTG-AAAAATAGAAATTGAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TCTTTGAAAAAATAGAAATTGAAAA
96855189 TACCTCAGCG
Statistics
Matches: 214, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
89 5 0.02
90 32 0.15
91 89 0.42
92 31 0.14
93 57 0.27
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (92 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTGAAAAAATAGAAATTGAAAAATAGAA
TTTTGAAAATACCTCGACATGTAATTC
Found at i:96855150 original size:184 final size:181
Alignment explanation
Indices: 96854859--96855188 Score: 468
Period size: 184 Copynumber: 1.8 Consensus size: 181
96854849 GTGACCTGAG
* * *
96854859 GCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAATAAGCATTAAAAATAGAATTTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTCTTGAAAAATAAGAATTAAAAATAGAATTTG
* *
96854924 AAAATACCTCGACGTGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TCTTGGAA
65 AAAATACCTCGACATGTAACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATCTTGG--
96854988 AAAAACAGAAATTGAAAAACAGAATTTTGAAAATATCTCGACATGTAATTCAAT
128 AAAAACAGAAATTGAAAAACAGAATTTTGAAAATATCTCGACATGTAATTCAAT
* *
96855042 GCTCAACTCATCTCTCGTAATATGAGTTGA-TTCTTGAAAAA-ATAGAAATTGAAAAATAGAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTCTTGAAAAATA-AG-AATT-AAAAATAGAA-T
* * * *
96855105 TTGAAAATACCTCGACATGTAATTCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATATTTTT
62 TTGAAAATACCTCGACATGTAACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATCTTG
*
96855170 GAAAAATAGAAATTGAAAA
127 GAAAAACAGAAATTGAAAA
96855189 TACCTCAGCG
Statistics
Matches: 130, Mismatches: 12, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
180 1 0.01
181 12 0.09
182 3 0.02
183 54 0.42
184 56 0.43
185 4 0.03
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (181 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTCTTGAAAAATAAGAATTAAAAATAGAATTTGA
AAATACCTCGACATGTAACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATCTTGGAAA
AACAGAAATTGAAAAACAGAATTTTGAAAATATCTCGACATGTAATTCAAT
Found at i:96855218 original size:77 final size:75
Alignment explanation
Indices: 96855090--96855262 Score: 206
Period size: 77 Copynumber: 2.3 Consensus size: 75
96855080 AAAATAGAAA
* ** * *
96855090 TTGAAAAATAGAATTTTGAAAATACCTCGACATGTAATTCGAGGCTCAACTCATCTCTCGCAATA
1 TTGAAAAATAGAA-ATTGAAAATACCTCGACATGTAAGCCGAAGCTCAACTCACCTCTCGCAATA
96855155 TGAGTTGATATTT
65 TGAGTTG--ATTT
* * * *
96855168 TTGAAAAATAGAAATTGAAAATACCTC-AGCGTGTGAGCCGAAGCTCAACTCACCTTTCGTAATA
1 TTGAAAAATAGAAATTGAAAATACCTCGA-CATGTAAGCCGAAGCTCAACTCACCTCTCGCAATA
96855232 TGAGTTGATTT
65 TGAGTTGATTT
*
96855243 TTGAAAGATAGAAATT-AAAA
1 TTGAAAAATAGAAATTGAAAA
96855263 CATCAAAGTA
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
74 4 0.05
75 19 0.23
76 1 0.01
77 47 0.56
78 13 0.15
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (75 bp):
TTGAAAAATAGAAATTGAAAATACCTCGACATGTAAGCCGAAGCTCAACTCACCTCTCGCAATAT
GAGTTGATTT
Found at i:96864213 original size:40 final size:39
Alignment explanation
Indices: 96864154--96864336 Score: 127
Period size: 39 Copynumber: 4.6 Consensus size: 39
96864144 TCGAATGATG
* *
96864154 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGACTAAG-CCTGAAGGCATTTGTGC-AAGTGACTAAT
* * * *
96864193 ATCCGGACTAAGATCTGAAGGCAGTTGTGCGAGTTACTAAT
1 -TCCGGACTAAG-CCTGAAGGCATTTGTGCAAGTGACTAAT
* * *
96864234 TCCGGGCTAAGCCTGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGACTAAGCCTGAAGGCATTTGTGCAAGTGACTAAT
** * * * * * *
96864273 TCCGGGTTAAGCCCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGACTAAGCCTGAAGGCATTTGTGCAAGTGACTAAT
** *
96864312 TCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGACTAAG-CCTGAAGGCATTT
96864337 TTGTGAGTTA
Statistics
Matches: 124, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 71 0.57
40 45 0.36
41 8 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGACTAAGCCTGAAGGCATTTGTGCAAGTGACTAAT
Found at i:96864345 original size:40 final size:40
Alignment explanation
Indices: 96864154--96864377 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
96864144 TCGAATGATG
* * *
96864154 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
96864194 TCCGGACTAAGAT-CTGAAGGCAGTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
96864234 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
96864273 TCCGGGTTAAG-CCCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
96864312 TCCGGGTTAAGTCCCGAAGGCATTTTTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
96864353 -CCGGGCTATGTCCCGAAGCCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
96864378 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 71 0.45
40 77 0.49
41 9 0.06
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96864357 original size:79 final size:79
Alignment explanation
Indices: 96864154--96864384 Score: 236
Period size: 79 Copynumber: 2.9 Consensus size: 79
96864144 TCGAATGATG
* * * * *
96864154 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCTGAAGGCAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATATCCGGGCTAAGACCCGAAGGCA-T
* *
96864218 TGTGCGAGTTACTAAT
64 TGTACGAGTTACTAAA
* * *
96864234 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGTTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCATT
96864296 GGTACGAGTTACTAAA
65 -GTACGAGTTACTAAA
* * * * * *
96864312 TCCGGGTTAAGTCCCGAAGGCATTTTTGTGAGTTACTATAACCGGGCTATGTCCCGAAGCCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGACCCGAAGGCA-TT
*
96864377 GAACGAGT
65 GTACGAGT
96864385 AGCTATATCC
Statistics
Matches: 125, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
77 2 0.02
78 32 0.26
79 55 0.44
80 34 0.27
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTG
TACGAGTTACTAAA
Found at i:96864399 original size:79 final size:79
Alignment explanation
Indices: 96864222--96864410 Score: 188
Period size: 79 Copynumber: 2.4 Consensus size: 79
96864212 GGCAGTTGTG
* * * * * *
96864222 CGAGTTACTAATTCCGGGCT-AAGCCTGAAGGCATTTGTGCGAGTTACTAATTCCGGGTTAAGCC
1 CGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCC
* *
96864286 CGAAGGCATTGGTA
66 CGAAGCCATTGGAA
* * * *
96864300 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTTTGTGAGTTACT-ATAACCGGGCTATGT
1 CGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-
*
96864364 CCCGAAGCCATTTGAA
64 CCCGAAGCCATTGGAA
* *
96864380 CGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
96864411 TATGTGATTC
Statistics
Matches: 91, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
78 20 0.22
79 47 0.52
80 24 0.26
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (79 bp):
CGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCC
CGAAGCCATTGGAA
Found at i:96869456 original size:20 final size:20
Alignment explanation
Indices: 96869428--96869470 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
96869418 GAATATAAAA
* *
96869428 AAAACTTATAATTATTTTTT
1 AAAACTTATAATGAATTTTT
* *
96869448 AAAATTTATTATGAATTTTT
1 AAAACTTATAATGAATTTTT
96869468 AAA
1 AAA
96869471 GTCAGAACAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
AAAACTTATAATGAATTTTT
Found at i:96870407 original size:45 final size:47
Alignment explanation
Indices: 96870343--96870463 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
96870333 GCCCCTAAGT
*
96870343 GAACTCGGACTCAACTCAACGAG-TCGGATGCCTAGTTACATC-CAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
96870388 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
96870435 GAACTCAGACTCAACTCAACGAGTTCGGA
1 GAACTCAGACTCAACTCAACGAGTTCGGA
96870464 CATTCGCATC
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
45 22 0.30
46 19 0.26
47 32 0.44
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:96870966 original size:30 final size:30
Alignment explanation
Indices: 96870932--96870991 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
96870922 ATTTAATACG
96870932 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
96870962 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
96870992 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:96877917 original size:47 final size:47
Alignment explanation
Indices: 96877803--96877972 Score: 169
Period size: 45 Copynumber: 3.7 Consensus size: 47
96877793 GCCCCTAAGT
* * * *
96877803 GAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCC--AAGC
96877849 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
96877896 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
96877941 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
96877973 TCAACCATCC
Statistics
Matches: 105, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 29 0.28
46 27 0.26
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:96877972 original size:92 final size:93
Alignment explanation
Indices: 96877803--96877972 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
96877793 GCCCCTAAGT
* *
96877803 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96877868 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
96877896 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96877960 CGAGTTCGGATGC
66 CGAGTTCGGATGC
96877973 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 35 0.47
93 39 0.53
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:96878423 original size:30 final size:30
Alignment explanation
Indices: 96878389--96878448 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
96878379 ATTTAATACG
96878389 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
96878419 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
96878449 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:96886422 original size:40 final size:40
Alignment explanation
Indices: 96886335--96886515 Score: 163
Period size: 40 Copynumber: 4.6 Consensus size: 40
96886325 AAATTGAATG
* * * * *
96886335 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
96886374 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
*
96886414 ATATCCGGGCTAAGA-CCGAAGGC-ATTCGTGC-AGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
96886452 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
96886492 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
96886516 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 21, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
38 22 0.19
39 36 0.31
40 58 0.50
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:96886472 original size:39 final size:38
Alignment explanation
Indices: 96886378--96886484 Score: 135
Period size: 39 Copynumber: 2.7 Consensus size: 38
96886368 GAAATTATAA
* *
96886378 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTAGCTAAAT
* *
96886418 CCGGGCTAAGA-CCGAAGGCATTCGTGCAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCAGTAGCTAAAT
96886456 CCGGGCTAAGACCCGAAGGCATTTGTGCA
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCA
96886485 AATCGTGATA
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
38 22 0.37
39 26 0.43
40 12 0.20
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (38 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCAGTAGCTAAAT
Found at i:96903208 original size:28 final size:28
Alignment explanation
Indices: 96903143--96903243 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
96903133 ATAGTGAATC
*
96903143 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
96903172 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
96903200 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
96903230 CGCACACTTAGTGC
1 CGCACACTTAGTGC
96903244 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:96911163 original size:28 final size:28
Alignment explanation
Indices: 96911098--96911198 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
96911088 ATAGTGAATC
*
96911098 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
96911127 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
96911155 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
96911185 CGCACACTTAGTGC
1 CGCACACTTAGTGC
96911199 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:96913606 original size:29 final size:29
Alignment explanation
Indices: 96913531--96913670 Score: 137
Period size: 29 Copynumber: 4.9 Consensus size: 29
96913521 ATGAATATAT
* *
96913531 TGTGATTTGGGCCAGATGGGCCATATAAA
1 TGTGAATTGGGCCAGATGGGCCATATGAA
** *
96913560 TAAG-ATTGGGCCCA-ATGGACCATATGAA
1 TGTGAATTGGG-CCAGATGGGCCATATGAA
*
96913588 TGTGAATTGGGCCTGATGGGCCATATGAA
1 TGTGAATTGGGCCAGATGGGCCATATGAA
* *
96913617 CGTGAATTGGGCCAAATGGGCCATAT-AGA
1 TGTGAATTGGGCCAGATGGGCCATATGA-A
*
96913646 TGAG-ATTGGGCCTAG-TGGGCCATAT
1 TGTGAATTGGGCC-AGATGGGCCATAT
96913671 ACATGTATGT
Statistics
Matches: 91, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
28 40 0.44
29 51 0.56
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGTGAATTGGGCCAGATGGGCCATATGAA
Found at i:96913654 original size:57 final size:57
Alignment explanation
Indices: 96913537--96913671 Score: 152
Period size: 57 Copynumber: 2.4 Consensus size: 57
96913527 ATATTGTGAT
* * *
96913537 TTGGGCCAGATGGGCCATATAAATAAGATTGGGCCCAATGGACCATATGAATGTGAA
1 TTGGGCCTGATGGGCCATATAAATAAGATTGGGCCAAATGGACCATATGAATGAGAA
* * *
96913594 TTGGGCCTGATGGGCCATATGAACGTGA-ATTGGGCCAAATGGGCCATAT-AGATGAG-A
1 TTGGGCCTGATGGGCCATAT-AA-ATAAGATTGGGCCAAATGGACCATATGA-ATGAGAA
96913651 TTGGGCCT-AGTGGGCCATATA
1 TTGGGCCTGA-TGGGCCATATA
96913672 CATGTATGTA
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
56 2 0.03
57 39 0.57
58 25 0.37
59 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (57 bp):
TTGGGCCTGATGGGCCATATAAATAAGATTGGGCCAAATGGACCATATGAATGAGAA
Found at i:96917638 original size:29 final size:29
Alignment explanation
Indices: 96917576--96917678 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
96917566 GTGACGAGAT
* * *
96917576 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
96917605 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
96917634 TGGCACTACGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
96917663 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
96917679 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:96919505 original size:18 final size:20
Alignment explanation
Indices: 96919471--96919520 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
96919461 CTTGTTGTAG
96919471 GCCAAGGTGGTGCTCAGC-CA
1 GCCAAGG-GGTGCTCAGCGCA
*
96919491 -CCAAGGGGTGGTCAGCTGCA
1 GCCAAGGGGTGCTCAGC-GCA
96919511 GCCAAGGGGT
1 GCCAAGGGGT
96919521 CGTGGGCAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 9 0.35
19 6 0.23
20 2 0.08
21 9 0.35
ACGTcount: A:0.20, C:0.26, G:0.40, T:0.14
Consensus pattern (20 bp):
GCCAAGGGGTGCTCAGCGCA
Found at i:96924141 original size:16 final size:16
Alignment explanation
Indices: 96924128--96924162 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
96924118 GCAAAAGCTG
96924128 AAATGCCGAAAAGCCA
1 AAATGCCGAAAAGCCA
*
96924144 AAATGCCGAAAAGTCA
1 AAATGCCGAAAAGCCA
96924160 AAA
1 AAA
96924163 ATTTGGGTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.54, C:0.20, G:0.17, T:0.09
Consensus pattern (16 bp):
AAATGCCGAAAAGCCA
Found at i:96924405 original size:28 final size:29
Alignment explanation
Indices: 96924374--96924525 Score: 121
Period size: 29 Copynumber: 5.3 Consensus size: 29
96924364 GTGAGCATGA
* **
96924374 ATAT-AATGTGATTTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* * *
96924402 ATATAAATGAG-ATTGGGCCTAATGGGCT
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* * *
96924430 ATATGAGTGTGAATTAGGCCTAATGGGCT
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* * *
96924459 ATATGAACGTGAATTGGGCCCAATGGGTC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* * ** *
96924488 ATATAAATGAG-ATTACGCCTAGTGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
*
96924516 ATATGCATGT
1 ATATGAATGT
96924526 ATGTAAGGGT
Statistics
Matches: 96, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
28 44 0.46
29 52 0.54
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTAATGGGCC
Found at i:96932320 original size:40 final size:40
Alignment explanation
Indices: 96932230--96932490 Score: 260
Period size: 40 Copynumber: 6.5 Consensus size: 40
96932220 CTCAAGTAAT
* * * *
96932230 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
96932268 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
96932308 CTTTGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** * * *
96932348 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** * * *
96932388 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
96932428 CTTC-GGATCTTAGTCCAGATATAGTCATTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
96932469 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
96932491 CGTTCGAATA
Statistics
Matches: 187, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
38 11 0.06
39 16 0.09
40 131 0.70
41 26 0.14
42 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:96935503 original size:40 final size:40
Alignment explanation
Indices: 96935426--96935647 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
96935416 GAATCACATA
* * * *
96935426 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
96935465 CCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
96935505 CCTTCGGGACTTAACCCGAATTTAGTAACTCGCTCCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
96935545 CCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * * *
96935584 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAATG
96935625 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
96935648 CATTCGAATA
Statistics
Matches: 150, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
38 3 0.02
39 40 0.27
40 74 0.49
41 30 0.20
42 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:96935559 original size:79 final size:79
Alignment explanation
Indices: 96935426--96935590 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
96935416 GAATCACATA
* * **
96935426 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATACCTTCGGGACATAGCCCG-GTTATAG
1 CCTTCGGGACTTAACCGAATATAGCTACTCGCTCAAATACCTTCGGGACATAGCCCGAAAT-TAG
96935490 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* * * *
96935505 CCTTCGGGACTTAACCCGAATTTAG-TAACTCGCTCCAATGCCTTCGGG-CTTAGCCCGAAATTA
1 CCTTCGGGACTTAA-CCGAATATAGCT-ACTCGCTCAAATACCTTCGGGACATAGCCCGAAATTA
96935568 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
96935584 CCTTCGG
1 CCTTCGG
96935591 ATCTTAGTCC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
79 47 0.63
80 28 0.37
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGAATATAGCTACTCGCTCAAATACCTTCGGGACATAGCCCGAAATTAGT
AACTCGCACAAATG
Found at i:96943889 original size:40 final size:40
Alignment explanation
Indices: 96943842--96944023 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
96943832 CTTGCACAAG
* *
96943842 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
96943882 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
96943922 GCCTTCGGGT-TTAGCCCGGATATAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
96943961 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCA-AAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
96944000 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
96944024 CATTCGAATA
Statistics
Matches: 125, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 59 0.47
40 66 0.53
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:96943936 original size:79 final size:78
Alignment explanation
Indices: 96943842--96944023 Score: 249
Period size: 79 Copynumber: 2.3 Consensus size: 78
96943832 CTTGCACAAG
* * *
96943842 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGA-CTTAGCCCGGATAT
1 GCCTTCGGGT-TTAGCCCGGATATAGTAACTAGCACAAATGCCTTC-GGATCTTAGCCCGGATAT
* *
96943906 AGTCGCTAGCACAAAT
64 AGTCACTAGCA-AAAA
* *
96943922 GCCTTCGGGTTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
1 GCCTTCGGGTTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAG
96943987 TCACTAGCAAAAA
66 TCACTAGCAAAAA
*
96944000 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGG-TTTAGCCCGGATAT
96944024 CATTCGAATA
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
78 15 0.16
79 67 0.73
80 10 0.11
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (78 bp):
GCCTTCGGGTTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAG
TCACTAGCAAAAA
Found at i:96943947 original size:39 final size:39
Alignment explanation
Indices: 96943806--96944023 Score: 237
Period size: 39 Copynumber: 5.5 Consensus size: 39
96943796 CTCAAGTAAT
* * *
96943806 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGG-TTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
96943844 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGT-TTAGCCCGGATATAGTCACTAGCACAAATGC
* *
96943884 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGG-TTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
96943924 CTTCGGGTTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
96943963 CTTCGGATCTTAGTCCGGATATAGTCACTAGCA-AAAAGC
1 CTTCGGGT-TTAGCCCGGATATAGTCACTAGCACAAATGC
*
96944002 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGG-TTTAGCCCGGATAT
96944024 CATTCGAATA
Statistics
Matches: 152, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 72 0.47
40 68 0.45
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (39 bp):
CTTCGGGTTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:96951085 original size:28 final size:29
Alignment explanation
Indices: 96951018--96951118 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
96951008 ATAGTGAATC
*
96951018 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
96951047 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
96951075 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
96951105 CGCACACTTAGTGC
1 CGCACACTTAGTGC
96951119 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:96955692 original size:39 final size:39
Alignment explanation
Indices: 96955638--96955741 Score: 127
Period size: 39 Copynumber: 2.6 Consensus size: 39
96955628 AATGTTCGAG
* ** *
96955638 TGATATCTGGGCTAAGCCCGAAGGCAATTGGGTGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCAAATTA
* * *
96955677 TGATATCCGGGCTAAGCCCGAAGGAAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCAAATTA
*
96955716 TGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
96955742 CTTTGTGCGG
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
39 47 0.85
40 8 0.15
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCAAATTA
Found at i:96962356 original size:28 final size:29
Alignment explanation
Indices: 96962289--96962389 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
96962279 ATAGTGAATC
*
96962289 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
96962318 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
96962346 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
96962376 CGCACACTTAGTGC
1 CGCACACTTAGTGC
96962390 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:96964890 original size:33 final size:34
Alignment explanation
Indices: 96964826--96964891 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 34
96964816 AATCAAAAAT
* **
96964826 AGTGTGGGCCTGAGCCCATTTTAGTAACAGTATC
1 AGTGTGGGCCTAAGCCCATTACAGTAACAGTATC
96964860 AGTG-GGGCCTAAGCCCATTACAG-AATCAGTAT
1 AGTGTGGGCCTAAGCCCATTACAGTAA-CAGTAT
96964892 AGTATGCAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 2 0.07
33 22 0.79
34 4 0.14
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (34 bp):
AGTGTGGGCCTAAGCCCATTACAGTAACAGTATC
Found at i:96969282 original size:6 final size:6
Alignment explanation
Indices: 96969257--96969348 Score: 62
Period size: 6 Copynumber: 15.0 Consensus size: 6
96969247 TCAAAACTAC
* * * *
96969257 AATCAA AATGAG AATCAG AATTAG AATCAG -GTGACAG AATCAG AATCAG
1 AATCAG AATCAG AATCAG AATCAG AATCAG AAT--CAG AATCAG AATCAG
* * * *
96969306 AATCAG AATTAG -GTGACAG AATTAG AATCAG AATCAG TATCAG
1 AATCAG AATCAG AAT--CAG AATCAG AATCAG AATCAG AATCAG
96969349 GTAACGGGAT
Statistics
Matches: 66, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
5 2 0.03
6 57 0.86
7 5 0.08
8 2 0.03
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.21
Consensus pattern (6 bp):
AATCAG
Found at i:96969305 original size:31 final size:31
Alignment explanation
Indices: 96969267--96969370 Score: 136
Period size: 31 Copynumber: 3.4 Consensus size: 31
96969257 AATCAAAATG
*
96969267 AGAATCAGAATTAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
* *
96969298 AGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
* * * *
96969329 AGAATCAGAATCAGTATCAGGTAACGGGATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
96969360 AAAATCAGAAT
1 AGAATCAGAAT
96969371 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:96969924 original size:27 final size:27
Alignment explanation
Indices: 96969894--96970177 Score: 189
Period size: 27 Copynumber: 10.2 Consensus size: 27
96969884 AGGAAAAATG
* *
96969894 GTAATTTTACCCTACAAGAGTATCTCA
1 GTAATTCTACCCTACAAGAGTATTTCA
* *
96969921 GTAATTCTACCTTACAGGAGTATTTCA
1 GTAATTCTACCCTACAAGAGTATTTCA
* * *
96969948 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGAGTATTTCA
* *
96969975 GTATTTCTACCCTACAA-AGGTATTTCG
1 GTAATTCTACCCTACAAGA-GTATTTCA
* * *
96970002 GTAATTCTACCCTATAAGGGTATTTTA
1 GTAATTCTACCCTACAAGAGTATTTCA
* *
96970029 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGAGTATTTCA
* * *
96970055 GATATTTCTACCCCACAGGGGTATTTCGGTATTTCA
1 G-TAATTCTACCCTACA--AG-A-----GTATTTCA
* * * *
96970091 GTATTTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGAGTATTTCA
* *
96970118 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGAGTATTTCA
* * * *
96970144 G-ACATTTCTATCCAACAAGGGTATTTTA
1 GTA-A-TTCTACCCTACAAGAGTATTTCA
96970172 GTAATT
1 GTAATT
96970178 TTGTAAATCG
Statistics
Matches: 210, Mismatches: 31, Indels: 32
0.77 0.11 0.12
Matches are distributed among these distances:
25 1 0.00
26 2 0.01
27 178 0.85
28 2 0.01
29 3 0.01
33 2 0.01
35 21 0.10
36 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGAGTATTTCA
Done.